Citrus Sinensis ID: 043533
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | 2.2.26 [Sep-21-2011] | |||||||
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.956 | 0.806 | 0.418 | 2e-68 | |
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.920 | 0.775 | 0.432 | 5e-68 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.956 | 0.818 | 0.395 | 9e-66 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.956 | 0.818 | 0.392 | 2e-65 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.956 | 0.818 | 0.392 | 3e-65 | |
| C6TAY1 | 358 | Flavonoid 4'-O-methyltran | no | no | 0.983 | 0.826 | 0.394 | 3e-65 | |
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 0.993 | 0.819 | 0.411 | 2e-60 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.960 | 0.802 | 0.387 | 4e-58 | |
| Q6VMW0 | 366 | 8-hydroxyquercetin 8-O-me | N/A | no | 0.920 | 0.756 | 0.4 | 2e-57 | |
| Q9LEL6 | 347 | (RS)-norcoclaurine 6-O-me | N/A | no | 0.933 | 0.809 | 0.403 | 3e-56 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function desciption |
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Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 196/349 (56%), Gaps = 61/349 (17%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
E+FQGQA LY+ I HG+ IT+SELVS L + TK
Sbjct: 12 EIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVPQTKAGNV 71
Query: 45 -------TVNG------------QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAP 85
NG + EAY LTAAS LL+K CL+P V +DP
Sbjct: 72 QRIMRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGS 131
Query: 86 FQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQ 145
+ L W +LTL+ G FWEF+N+NP N+ FN+AMASDS+++ + +C
Sbjct: 132 YHQLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMIN--LALRDCNS 189
Query: 146 IFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFI 205
FEG+ S+VDVGGG + ++II + FP +KC V D P V NL +NL Y+ GDM + +
Sbjct: 190 GFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSV 249
Query: 206 PPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK 252
P A+A L K IL+K +EA++S+GE+GKVIII++VIN ++EHE+T TK
Sbjct: 250 PKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTK 309
Query: 253 FLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
L D+ M+ GKER+E EW KLF +A F YKI+P+ G SLIEVYP
Sbjct: 310 LLMDVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5EC: 0 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function description |
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Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 182/312 (58%), Gaps = 35/312 (11%)
Query: 24 HGRAITLSELVSALDIQPTKTTV---------------------NGQEEAYGLTAASTLL 62
HG+ +TL ELV+ L + P ++ +EE Y LT AS LL
Sbjct: 47 HGKPMTLPELVAKLPVHPKRSQCVYRLMRILVHSGFLAAQRVQQGKEEEGYVLTDASRLL 106
Query: 63 IKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQR 122
+ D + P V +DP P+ LS+WF+ + T + T + FW++ P +N
Sbjct: 107 LMDDSLSIRPLVLAMLDPILTKPWHYLSAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNS 166
Query: 123 FNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLP 182
FNEAMASD+ ++TS ++K E + +F GL SLVDVGGG ++ I+ AFP + CTVLDL
Sbjct: 167 FNEAMASDARLLTSVLLK-EGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLS 225
Query: 183 HAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGER 229
H VA L + NL Y AGDM IPPA+A L K ILK+ REAI S
Sbjct: 226 HVVAGLQGSKNLNYFAGDMFEAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENG 285
Query: 230 GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289
GKVIIID+++ + +++ TET+ FD+ M + A G+ER E+EW KLF DA FSHYKITP
Sbjct: 286 GKVIIIDMIMMKNQGDYKSTETQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITP 345
Query: 290 IFGMKSLIEVYP 301
I G++SLIEVYP
Sbjct: 346 ILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
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Score = 250 bits (638), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 192/344 (55%), Gaps = 56/344 (16%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
E+F+ QA LYK I HG+ I+LS LVS L + +K
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 45 --------------TVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLS 90
+ +EE+Y LT AS LL++ CL+P V +DP + L
Sbjct: 72 RRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELK 131
Query: 91 SWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGL 150
W +LTL+ G FW+F+++NP N FN+AMASDS+++ + +C +F+GL
Sbjct: 132 KWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGL 189
Query: 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA 210
S+VDVGGG + ++II E FP +KC V D P V NL ++NL Y+ GDM IP A+A
Sbjct: 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADA 249
Query: 211 FLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 257
L K ILKK +EA+ ++G+RGKV IID+VIN +++E+++T+ K L D+
Sbjct: 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDENQVTQIKLLMDV 309
Query: 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
M+ GKER E EW KLF +A F HYKI+P+ G SLIE+YP
Sbjct: 310 NMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 192/344 (55%), Gaps = 56/344 (16%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
E+F+ QA LYK I HG+ I+LS LVS L + +K
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 45 --------------TVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLS 90
+ +EE+Y LT AS LL++ CL+P V +DP + L
Sbjct: 72 RRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELK 131
Query: 91 SWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGL 150
W +LTL+ G FW+F+++NP N FN+AMASDS+++ + +C +F+GL
Sbjct: 132 KWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGL 189
Query: 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA 210
S+VDVGGG + ++II E FP +KC V D P V NL ++NL Y+ GDM IP A+A
Sbjct: 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADA 249
Query: 211 FLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 257
L K ILKK +EA+ ++G+RGKV IID+VI+ +++E+++T+ K L D+
Sbjct: 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV 309
Query: 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
M+ GKER E EW KLF +A F HYKI+P+ G SLIE+YP
Sbjct: 310 NMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 192/344 (55%), Gaps = 56/344 (16%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
E+F+ QA LYK I HG+ I+LS LVS L + +K
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 45 --------------TVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLS 90
+ +EE+Y LT AS LL++ CL+P V +DP + L
Sbjct: 72 RRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELK 131
Query: 91 SWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGL 150
W +LTL+ G FW+F+++NP N FN+AMASDS+++ + +C +F+GL
Sbjct: 132 KWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGL 189
Query: 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA 210
S+VDVGGG + ++II E FP +KC V D P V NL ++NL Y+ GDM IP A+A
Sbjct: 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADA 249
Query: 211 FLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 257
L K ILKK +EA+ ++G+RGKV IID+VI+ +++E+++T+ K L D+
Sbjct: 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIKLLMDV 309
Query: 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
M+ GKER E EW KLF +A F HYKI+P+ G SLIE+YP
Sbjct: 310 NMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1 | Back alignment and function description |
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Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 194/355 (54%), Gaps = 59/355 (16%)
Query: 4 NQDQGAKELFQGQAQLYKLI-------------------------HGRAITLSELVSALD 38
N + A E+FQGQA LYK + HG+ IT SELVS L
Sbjct: 6 NNGRKASEIFQGQALLYKHLLGFIDSKCLKWMVELDIPDIIHSHSHGQPITFSELVSILQ 65
Query: 39 IQPTKTT-------------------VNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVD 79
+ PTKT ++ EAY LTAAS LL+K L+P V F++
Sbjct: 66 VPPTKTRQVQSLMRYLAHNGFFEIVRIHDNIEAYALTAASELLVKSSELSLAPMVEYFLE 125
Query: 80 PFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVV 139
P + L W +LT++ G FW+F+N++PA N+ FNEAMA DS+++ +
Sbjct: 126 PNCQGAWNQLKRWVHEEDLTVFGVSLGTPFWDFINKDPAYNKSFNEAMACDSQMLN--LA 183
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
+C +FEGL S+VDVGGG ++II EAFP +KC VL+ P+ V NL ++NL ++ G
Sbjct: 184 FRDCNWVFEGLESIVDVGGGTGITAKIICEAFPKLKCMVLERPNVVENLSGSNNLTFVGG 243
Query: 200 DMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEH 246
DM + IP A+A L K IL+ +EAI+ + GKV++ID VIN ++E
Sbjct: 244 DMFKCIPKADAVLLKLVLHNWNDNDCMKILENCKEAISGESKTGKVVVIDTVINENKDER 303
Query: 247 ELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
++TE K L D+ M+ GKER E +W KLF +A F YKI+P G SLIE+YP
Sbjct: 304 QVTELKLLMDVHMACIINGKERKEEDWKKLFMEAGFQSYKISPFTGYLSLIEIYP 358
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S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively. Glycine max (taxid: 3847) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 1 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 198/367 (53%), Gaps = 68/367 (18%)
Query: 1 MDANQDQGAK--ELFQGQAQLYKLI-----------------------HGRAITLSELVS 35
MD + G++ EL Q Q LYK + HG+ ITL EL +
Sbjct: 1 MDFSSSNGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELAT 60
Query: 36 ALDIQPTKTTV----------NG--------------QEEAYGLTAASTLLIKDKPYCLS 71
AL+++P+K V NG +E AYGLT S LL+K CL+
Sbjct: 61 ALNLRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLA 120
Query: 72 PTVSVFVDPFFVAPFQSLSSWF--KGTELTLWETVHGIKFWEFMNQNPAIN--QRFNEAM 127
P V + P + ++S WF ELTL+E+ G FWEF+N+ + F EAM
Sbjct: 121 PIVKGALHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAM 180
Query: 128 ASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVAN 187
A+DS + + ECK +FEGLGSLVDV GG +++I EAFP +KCTV D P VAN
Sbjct: 181 AADSHMFK--LALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVAN 238
Query: 188 LPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVII 234
L +NL ++ GDM + +PPA+A L K ILK +EAI+ G+ GKVII
Sbjct: 239 LTGDENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVII 298
Query: 235 IDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMK 294
IDI I+ ++ ELTE K +D+VM GKER + EW KL +DA FS YKITPI G K
Sbjct: 299 IDISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFK 358
Query: 295 SLIEVYP 301
SLIEV+P
Sbjct: 359 SLIEVFP 365
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2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 182/351 (51%), Gaps = 62/351 (17%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKTTV- 46
EL+ Q LYK + HG+ +TL EL S+L + P+K +
Sbjct: 12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHPSKVNIL 71
Query: 47 ---------NG-------------QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVA 84
NG +E AY LT +S LL+ K CLS V + P +
Sbjct: 72 YRFLRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALHPSSLD 131
Query: 85 PFQSLSSWF-KGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSEC 143
+ WF + E TL+E G +W+F+N++ F +AMA+DS + + E
Sbjct: 132 MWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLFK--LAIQEN 189
Query: 144 KQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR 203
K +FEGL SLVDV GG +++I EAFP IKCTV D P V NL +NL ++ GDM +
Sbjct: 190 KHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVGGDMFK 249
Query: 204 FIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE 250
+P A+A L K ILK +EAI+ G+ GKVIIIDI I+ ++ LTE
Sbjct: 250 SVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTE 309
Query: 251 TKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+ +D+VM GKERT+ EW KL +DA FS YKITPI G KSLIEVYP
Sbjct: 310 LQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 188/320 (58%), Gaps = 43/320 (13%)
Query: 24 HGRAITLSELVSALDIQPTKT----------------------------TVNGQEEAYGL 55
HG ITLS+L AL+I K+ +E+AY L
Sbjct: 48 HGNPITLSQLADALNINKAKSHGLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSL 107
Query: 56 TAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQ 115
T AS LL++ +P ++P DP + + LS WF+ + ++T +G+ F E+
Sbjct: 108 TPASRLLLRSEPLSVAPFALAMSDPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVA 167
Query: 116 NPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIK 175
+ +N FNEAMA D+ + S ++ +EC++IF+GL S+VDVGGG + ++ I+ AFPG++
Sbjct: 168 DDRLNVLFNEAMACDAGFVNS-ILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGME 226
Query: 176 CTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREA 222
CTVLDLP+ V L ++NL +++GDM FIP A+A K ILKK +EA
Sbjct: 227 CTVLDLPNVVGGLKGSENLSFVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEA 286
Query: 223 IA-SNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAV 281
I+ SN K+I+++IV+ E+E HE TETK FD+ M TGKER+E EW KLFFDA
Sbjct: 287 ISRSNNSCRKIILVEIVMEDEKETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAG 346
Query: 282 FSHYKITPIFGMKSLIEVYP 301
F++YKIT + G++S+IEV+P
Sbjct: 347 FTNYKITRVLGLRSVIEVFP 366
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8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether. Mentha piperita (taxid: 34256) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|Q9LEL6|6OMT_COPJA (RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 176/320 (55%), Gaps = 39/320 (12%)
Query: 16 QAQLYKLIH--GRAITLSELVSALDIQP-------------------TKTTVNGQEEAYG 54
Q L +IH G ++TLSEL S L QP TK +++G E YG
Sbjct: 32 QLDLANIIHNSGTSMTLSELSSRLPSQPVNEDALYRVMRYLVHMKLFTKASIDG-ELRYG 90
Query: 55 LTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMN 114
L + L+K C+ ++ D F+AP+ L G T +E G W +M
Sbjct: 91 LAPPAKYLVKGWDKCMVGSILAITDKDFMAPWHYLKDGLSGESGTAFEKALGTNIWGYMA 150
Query: 115 QNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGI 174
++P NQ FNEAMA+DS ++ S +VK EC IF G+ +LVDVGGG + R I+ AFP I
Sbjct: 151 EHPEKNQLFNEAMANDSRLIMSALVK-ECGNIFNGITTLVDVGGGTGTAVRNIANAFPHI 209
Query: 175 KCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRRE 221
KCTV DLPH +A+ P + +AGDM +FIP A+A + K ILK+ +E
Sbjct: 210 KCTVYDLPHVIADSPGYSEVHCVAGDMFKFIPKADAIMMKCILHDWDDKECIEILKRCKE 269
Query: 222 AIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAV 281
A+ G GKVII+DIV+N + EH T+ + D+ M +N GKERTE EW KL DA
Sbjct: 270 AVPVKG--GKVIIVDIVLNV-QSEHPYTKMRLTLDLDMMLNTGGKERTEEEWKKLIHDAG 326
Query: 282 FSHYKITPIFGMKSLIEVYP 301
+ +KIT I ++S+IE YP
Sbjct: 327 YKGHKITQITAVQSVIEAYP 346
|
Catalyzes the transfer of the S-methyl group of S-adenosyl-L-methionine (AdoMet) to the 6-hydroxyl group of norcoclaurine to form coclaurine. Coptis japonica (taxid: 3442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | ||||||
| 255562994 | 359 | o-methyltransferase, putative [Ricinus c | 0.993 | 0.832 | 0.481 | 3e-84 | |
| 224077038 | 359 | flavonoid o-methyltransferase related [P | 0.976 | 0.818 | 0.481 | 5e-84 | |
| 224116348 | 372 | flavonoid o-methyltransferase related [P | 0.990 | 0.801 | 0.472 | 9e-83 | |
| 359483947 | 355 | PREDICTED: isoflavone-7-O-methyltransfer | 0.986 | 0.836 | 0.467 | 7e-78 | |
| 255563164 | 355 | o-methyltransferase, putative [Ricinus c | 0.990 | 0.839 | 0.458 | 1e-77 | |
| 225443568 | 361 | PREDICTED: isoflavone-7-O-methyltransfer | 0.986 | 0.822 | 0.460 | 2e-77 | |
| 225443574 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.996 | 0.837 | 0.456 | 5e-75 | |
| 359483934 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.996 | 0.837 | 0.459 | 7e-75 | |
| 330375623 | 367 | orcinol O-methyltransferase-like protein | 0.920 | 0.754 | 0.469 | 2e-74 | |
| 225443570 | 354 | PREDICTED: isoflavone-7-O-methyltransfer | 0.993 | 0.844 | 0.441 | 3e-74 |
| >gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 174/361 (48%), Positives = 214/361 (59%), Gaps = 62/361 (17%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD+ Q A EL Q Q +Y I HG+ ITL ELVSAL
Sbjct: 1 MDSTDSQKATELLQAQLHVYNHIFNYINSMCLKCAVQLGIPDIIHKHGKPITLPELVSAL 60
Query: 38 DIQPTKTT--------------------VNGQEEA---YGLTAASTLLIKDKPYCLSPTV 74
I PTK NGQEE Y LT +S LL+KD P CL P V
Sbjct: 61 HIHPTKINFMYRLMRMLVHSGFFSITKAANGQEEGQEVYVLTPSSKLLVKDNPNCLKPFV 120
Query: 75 SVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIM 134
+ P FV P L WF+G ELT+++ HG+ FWE+ +NP NQ FNEAMASDS +M
Sbjct: 121 DSLLKPDFVTPGHVLGDWFRGNELTVFQRAHGMAFWEYNERNPEFNQLFNEAMASDSRMM 180
Query: 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNL 194
+V +CK IFEG+ SLVDVGGGN S +RIISEAFP +KCTVL+LP + NL NL
Sbjct: 181 N--LVIRDCKPIFEGVNSLVDVGGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTKNL 238
Query: 195 KYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERG-KVIIIDIVIN 240
Y+ GDM + IP A+A + K ILKK +EAI+S G+ KVI+ID+VIN
Sbjct: 239 NYVGGDMFQHIPSADAIILKLILHGWNDEECVKILKKCKEAISSTGKGSEKVIVIDLVIN 298
Query: 241 AEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300
+++E+E TETK LFD++M ATGKERTE EW +LF A FSH+KITPI G++SLIEVY
Sbjct: 299 DKKDEYEFTETKLLFDMLMMFVATGKERTEKEWGELFLKAGFSHFKITPILGLRSLIEVY 358
Query: 301 P 301
P
Sbjct: 359 P 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 217/357 (60%), Gaps = 63/357 (17%)
Query: 5 QDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQP 41
QDQ A ELFQ L+ + HGR ITL LVSAL I P
Sbjct: 6 QDQKATELFQAHTHLHSQMFNYINSMSLMCAAQLGIPDIIHNHGRPITLPHLVSALHIAP 65
Query: 42 TKTTV------------------------NGQEEAYGLTAASTLLIKDKPYCLSPTVSVF 77
KT++ G+EEAY LT S LL+KD CLSP +S+
Sbjct: 66 NKTSIIYRLMRMLVHSGFFATTKAANGQGEGEEEAYVLTPPSQLLVKDNTNCLSPFMSL- 124
Query: 78 VDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSF 137
++P FV P+ SL WF+G E T +E +G+ FWE+ NQNP +N+ FNEAMA DS++M
Sbjct: 125 INPAFVTPWLSLGDWFRGNEPTAFEHAYGMAFWEYHNQNPELNRLFNEAMACDSQMMN-- 182
Query: 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYI 197
+V +CK IFEGL S+VDVGGG S SRIISEAFP + CTVL+LP + NL NL Y+
Sbjct: 183 LVIRDCKPIFEGLNSMVDVGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNLNYV 242
Query: 198 AGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEE 244
GDM + IP A+A L K ILKK +EAI+S + GKVII+D+VI+ +++
Sbjct: 243 GGDMFQHIPSADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVIDEKKD 302
Query: 245 EHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
E ELTETK LFD++M V A GKER+ EW KLF +A FSHYKITP+FG++SLIEVYP
Sbjct: 303 EKELTETKLLFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVYP 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 170/360 (47%), Positives = 219/360 (60%), Gaps = 62/360 (17%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
+D Q+Q A ELFQ Q LY + HGR ITL ELVSAL
Sbjct: 16 IDPIQEQKATELFQAQTHLYGQMFNYLNSMSLVCAAQLGIPDIIHNHGRPITLPELVSAL 75
Query: 38 DIQPTKTTV-----------------------NGQEEAYGLTAASTLLIKDKPYCLSPTV 74
I P K++ G EAY LT S LL+KD CLSP +
Sbjct: 76 HIPPNKSSCIYRLMRMLVHSGFFATTKAVIGQGGGGEAYVLTPPSQLLVKDNTNCLSPFM 135
Query: 75 SVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIM 134
S+ ++P FV P+ SL WF+G+E T ++ +G+ FWE+ NQNP +N FN AMA DS++M
Sbjct: 136 SL-INPAFVTPWHSLGDWFRGSEPTAFQQAYGMAFWEYNNQNPELNGLFNAAMACDSQMM 194
Query: 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNL 194
+V +CK IFEGL S+VDVGGG S +RIISE FP + CTVL++P +ANL +NL
Sbjct: 195 N--LVIRDCKPIFEGLDSMVDVGGGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENL 252
Query: 195 KYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINA 241
KY+ GDM + IP A+A L K ILKK +EAI+S + GKVII+D+VIN
Sbjct: 253 KYVGGDMFQHIPSADAVLLKLIFHGWSDEDCVKILKKCKEAISSKEKGGKVIIVDVVINE 312
Query: 242 EEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+++EHELTETK LFD++M V A GKER+ EW +LF +A FSHYKIT +FG++SLIEVYP
Sbjct: 313 KKDEHELTETKLLFDMLMMVVAAGKERSVEEWERLFLEAGFSHYKITSLFGLRSLIEVYP 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483947|ref|XP_003633042.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 213/359 (59%), Gaps = 62/359 (17%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD +G ELFQ Q+ +YK I H I+L +LVSAL
Sbjct: 1 MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSAL 60
Query: 38 DIQPTKTT-VNG----------------------QEEAYGLTAASTLLI-KDKPYCLSPT 73
+ PTKT VN ++E Y LT +S LL+ KD P
Sbjct: 61 HLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNV--PN 118
Query: 74 VSVFV----DPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMAS 129
+S FV DP V P+ L WF+G +LT ++T HG FW++ + + FNEAMAS
Sbjct: 119 LSAFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAHGKSFWDYGSHDHKFFNLFNEAMAS 178
Query: 130 DSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189
DS +M S V+K +C+ +FEGLGSLVDVGGG +RIISEAFP +KCTV DLPH V+N P
Sbjct: 179 DSRMM-SLVIK-DCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFP 236
Query: 190 EADNLKYIAGDMLRFIPPANAFLFK-------ILKKRREAIASNGERGKVIIIDIVINAE 242
E NLKY+ GDM + +P A+A L K ILKK REAI S + GKVI+IDIVIN +
Sbjct: 237 ECGNLKYVGGDMFQSVPTADAILLKGDEECVKILKKCREAIPSKEKGGKVIVIDIVINEK 296
Query: 243 EEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+EEH++TE K LFD++M TG+ER E EW KLF +A FSHYKI PIFG++SLIEV+P
Sbjct: 297 KEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563164|ref|XP_002522586.1| o-methyltransferase, putative [Ricinus communis] gi|223538277|gb|EEF39886.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/358 (45%), Positives = 213/358 (59%), Gaps = 60/358 (16%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD+ Q A +L Q Q +Y I HG+ ITL ELVSAL
Sbjct: 1 MDSVQSPKATDLLQAQTHIYNHIFNNLNSMCLKCSVQLGIPDIIQNHGKPITLPELVSAL 60
Query: 38 DIQPTKTTV--------------------NGQEEAYGLTAASTLLIKDKPYCLSPTVSVF 77
+I P KTT +GQE AY LT ++ LL+KD P CLS V
Sbjct: 61 NIHPGKTTCLYRLMRMLVYSGFFVTTETPDGQE-AYDLTPSTRLLVKDNPNCLSSFVIAL 119
Query: 78 VDPFFVAPFQSLSSWFKGTEL-TLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTS 136
+ P +VA L WFK +L T+++ HG++FWE+ ++P NQ FNE+MASDS +M
Sbjct: 120 LWPDYVAAGHYLGDWFKNNKLDTVYDQAHGMEFWEYNERHPEYNQIFNESMASDSRMMN- 178
Query: 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKY 196
+V +CK IFEGL S+VDVGGGN S +RIIS+ FP ++CTVLD V +L + NL Y
Sbjct: 179 -LVIGDCKPIFEGLNSVVDVGGGNGSLARIISQNFPHMQCTVLDRAQVVGSLEGSKNLNY 237
Query: 197 IAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEE 243
+ GDM + +P A+A + K ILK REAIAS G+ GKVI+IDIV++ ++
Sbjct: 238 VPGDMFKHVPSADAAILKLVLHCWNDEECIRILKNCREAIASKGKGGKVIVIDIVVDEKK 297
Query: 244 EEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
E+ ELTETK LFDI+M V G ERTE EW +LF +A FSHYKITP+ G++SLIEVYP
Sbjct: 298 EQDELTETKLLFDILMMVVVNGTERTEKEWKRLFLEAGFSHYKITPLLGVRSLIEVYP 355
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 213/365 (58%), Gaps = 68/365 (18%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD +G ELFQ Q+ +YK I H I+L +LVSAL
Sbjct: 1 MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSAL 60
Query: 38 DIQPTKTT-VNG----------------------QEEAYGLTAASTLLI-KDKPYCLSPT 73
+ PTKT VN ++E Y LT +S LL+ KD P
Sbjct: 61 HLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNV--PN 118
Query: 74 VSVFV----DPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMAS 129
+S FV DP V P+ L WF+G +LT ++T HG FW++ + + FNEAMAS
Sbjct: 119 LSAFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAHGKSFWDYGSHDHKFFNLFNEAMAS 178
Query: 130 DSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189
DS +M S V+K +C+ +FEGLGSLVDVGGG +RIISEAFP +KCTV DLPH V+N P
Sbjct: 179 DSRMM-SLVIK-DCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFP 236
Query: 190 EADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIID 236
E NLKY+ GDM + +P A+A L K ILKK REAI S + GKVI+ID
Sbjct: 237 ECGNLKYVGGDMFQSVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVID 296
Query: 237 IVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSL 296
IVIN ++EEH++TE K LFD++M TG+ER E EW KLF +A FSHYKI PIFG++SL
Sbjct: 297 IVINEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSL 356
Query: 297 IEVYP 301
IEV+P
Sbjct: 357 IEVFP 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443574|ref|XP_002278208.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/359 (45%), Positives = 208/359 (57%), Gaps = 59/359 (16%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD +GA ELFQ Q+ +YK I H TL +LVSAL
Sbjct: 1 MDLIHGEGAGELFQAQSHMYKHICSFMNSMALRCAVQLGIPDIIHNHAHPTTLPQLVSAL 60
Query: 38 DIQPTKTTV---------------------NGQEEAYGLTAASTLLIKDKPYC-LSPTVS 75
I PTK + + +EE Y LT +S LL+KD P LSP V
Sbjct: 61 HIPPTKASCVHRLMRLLVHSGFFAMAKVHEHEEEEGYILTPSSRLLLKDNPTSNLSPLVL 120
Query: 76 VFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMT 135
+ P V P+ W +G +LT +ET HG+ FW+ + NP I FNE MASDS++M
Sbjct: 121 TMLHPVLVTPWHFFGDWLRGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQMM- 179
Query: 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLK 195
S V E K +FEGL SLVD+GGG +RIISEAFP +KCTV DLPH VANLPE+ NL+
Sbjct: 180 SVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNLE 239
Query: 196 YIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAE 242
Y+ GDM + +P A+A L K ILKK REAI S E GKVIIID+VIN +
Sbjct: 240 YVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVINEK 299
Query: 243 EEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
++E ++TETK L D++M G+ER E EW KLF +A F H+KI+PIFG++SLIEV+P
Sbjct: 300 KDEDDITETKLLMDMMMMTLVNGRERNEKEWEKLFLEAGFRHHKISPIFGLRSLIEVFP 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483934|ref|XP_003633039.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 207/359 (57%), Gaps = 59/359 (16%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD +GA ELFQ Q+ +YK I H TL +LVSAL
Sbjct: 1 MDLIHGEGAGELFQAQSHMYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTTLPQLVSAL 60
Query: 38 DIQPTKTTV---------------------NGQEEAYGLTAASTLLIKDKPYC-LSPTVS 75
I PTK + + +EE Y LT +S LL KD P LSP V
Sbjct: 61 HIPPTKASCVHRLMRLLVHSGFFAIAKVHEHEEEEGYILTPSSRLLFKDNPTSNLSPFVL 120
Query: 76 VFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMT 135
+ P V P+ W +G +LT +ET HG+ FW+ + NP I FNE MASDS++M
Sbjct: 121 TVLHPALVTPWHFFGDWLRGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQMM- 179
Query: 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLK 195
S V E K +FEGL SLVD+GGG +RIISEAFP +KCTV DLPH VANLPE+ NL+
Sbjct: 180 SVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNLE 239
Query: 196 YIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAE 242
Y+ GDM + +P A+A L K ILKK REAI S E GKVIIID+VIN +
Sbjct: 240 YVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVINEK 299
Query: 243 EEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
++E ++TETK L D++M G+ER E EW +LF +A F HYKITPIFG++SLIEV+P
Sbjct: 300 KDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVFP 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330375623|gb|AEC13057.1| orcinol O-methyltransferase-like protein [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/311 (46%), Positives = 194/311 (62%), Gaps = 34/311 (10%)
Query: 24 HGRAITLSELVSALDIQPTKTTV--------------------NGQEEAYGLTAASTLLI 63
HG +TLSEL SAL I PTK+ EE Y LT AS LL+
Sbjct: 58 HGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGFFAKKKLSKTDEEGYTLTDASQLLL 117
Query: 64 KDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRF 123
KD P L+P ++ +DP P+ LS+WF+ + T ++T HG+ FW++ N P+I F
Sbjct: 118 KDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFF 177
Query: 124 NEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH 183
N+AMASD+ ++TS ++ +CK +FEGL SLVDVGGG + ++ I++AFP I+CTVLDLPH
Sbjct: 178 NDAMASDARLVTSVII-DDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPH 236
Query: 184 AVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERG 230
VA+L + NLKY GDM +PPA+ L K ILK+ REAI S + G
Sbjct: 237 VVADLQGSKNLKYTGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKNG 296
Query: 231 KVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290
KVIIID+++ ++ + E ET+ FD++M TGKER E EWAKLF DA FS YKITPI
Sbjct: 297 KVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKERNEKEWAKLFTDAGFSDYKITPI 356
Query: 291 FGMKSLIEVYP 301
G++SLIEVYP
Sbjct: 357 LGLRSLIEVYP 367
|
Source: Rosa chinensis Species: Rosa chinensis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443570|ref|XP_002278127.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 203/356 (57%), Gaps = 57/356 (16%)
Query: 1 MDANQDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSAL 37
MD QG ELF+ Q+ +YK + H + ITL EL SA+
Sbjct: 1 MDHINGQGRSELFEAQSFIYKHVFSFMDSMSLKCAVQLGIPDAIHNHNQPITLPELASAI 60
Query: 38 DIQPTKTT-------------------VNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFV 78
+ P KT+ V+ +E Y LT S LL+K L+P V +
Sbjct: 61 QVPPEKTSRLHQLMRLLVHSGFFAMQKVDENQEGYVLTPPSRLLVKGNATSLAPIVLGML 120
Query: 79 DPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFV 138
DP V P+ L SW +G+ LT +E HG+ W + NQNP E MA+DS +M+ +
Sbjct: 121 DPVLVTPWHFLGSWLQGSSLTAFEAAHGMDLWNYGNQNPEFFSLIGEIMATDSRMMS--L 178
Query: 139 VKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198
ECK+IFEGL SLVDVGGG + +R I EAFP +KCTVLDLP VANLP+++NL Y+
Sbjct: 179 AIRECKEIFEGLSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENLDYVG 238
Query: 199 GDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEE 245
GDM + IP A+A K ILK+ REAI S+ E GKVIIID+V++ +++E
Sbjct: 239 GDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSNKKDE 298
Query: 246 HELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
HEL +TK D++M V GKER E EW KLF +A FSHYKITP FG+ SLIEVYP
Sbjct: 299 HELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | ||||||
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.830 | 0.700 | 0.447 | 2.9e-62 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.853 | 0.704 | 0.466 | 4.2e-59 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.923 | 0.757 | 0.430 | 6.1e-58 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.837 | 0.688 | 0.415 | 3.3e-55 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.840 | 0.712 | 0.421 | 1.1e-50 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.900 | 0.724 | 0.366 | 2.9e-46 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.913 | 0.790 | 0.391 | 1e-43 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.641 | 0.505 | 0.325 | 2.4e-25 | |
| UNIPROTKB|P93324 | 372 | P93324 "Isoliquiritigenin 2'-O | 0.853 | 0.690 | 0.261 | 5.5e-21 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.817 | 0.677 | 0.291 | 3e-20 |
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
Identities = 119/266 (44%), Positives = 161/266 (60%)
Query: 49 QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIK 108
+ EAY LTAAS LL+K CL+P V +DP + L W +LTL+ G
Sbjct: 95 ENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQLKKWIYEEDLTLFGVSLGSH 154
Query: 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIIS 168
FWEF+N+NP N+ FN+AMASDS+ M + ++ +C FEG+ S+VDVGGG + ++II
Sbjct: 155 FWEFLNENPEYNKSFNDAMASDSQ-MINLALR-DCNSGFEGVESIVDVGGGIGTTAKIIC 212
Query: 169 EAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------I 215
+ FP +KC V D P V NL +NL Y+ GDM + +P A+A L K I
Sbjct: 213 DTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVPKADAVLLKWILHNWTDNDCRRI 272
Query: 216 LKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKERTESEWAK 275
L+K +EA++S+GE+GKVIII++VIN K L D+ M+ GKER+E EW K
Sbjct: 273 LEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKLLMDVNMAC-LNGKERSEEEWKK 331
Query: 276 LFFDAVFSHYKITPIFGMKSLIEVYP 301
LF +A F YKI+P+ G SLIEVYP
Sbjct: 332 LFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 131/281 (46%), Positives = 165/281 (58%)
Query: 43 KTTVN---GQEE--AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWF--KG 95
KTTV+ G EE AYGLT S LL+K CL+P V + P + ++S WF
Sbjct: 87 KTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSLDMWRSSKKWFLEDN 146
Query: 96 TELTLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTSFVVKSECKQIFEGLGSL 153
ELTL+E+ G FWEF+N+ + F EAMA+DS M +K ECK +FEGLGSL
Sbjct: 147 EELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSH-MFKLALK-ECKHVFEGLGSL 204
Query: 154 VDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF 213
VDV GG +++I EAFP +KCTV D P VANL +NL ++ GDM + +PPA+A L
Sbjct: 205 VDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGGDMFKSVPPADAVLL 264
Query: 214 K-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMS 260
K ILK +EAI+ G+ GKVIIIDI I+ K +D+VM
Sbjct: 265 KWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELTELKLDYDLVML 324
Query: 261 VNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
GKER + EW KL +DA FS YKITPI G KSLIEV+P
Sbjct: 325 TMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 130/302 (43%), Positives = 175/302 (57%)
Query: 19 LYKLIHGRAITLSELVSALDIQPTKTTVNGQEE---AYGLTAASTLLIKDKPYCLSPTVS 75
LY+ + R +T + + + P++ +G+EE AY LT S LL+K KP CL+ V
Sbjct: 71 LYRFL--RLLTHNGFFAKTTV-PSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVR 127
Query: 76 VFVDPFFVAPFQSLSSWFK-GTELTLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSE 132
+ P + ++S WFK ELTL+E+ G FW+F+N++ F EAMA+DS+
Sbjct: 128 GALHPSSLDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQ 187
Query: 133 IMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEAD 192
M +K EC+ +FEGL SLVDVGGG +++I E FP +KCTV D P V NL +
Sbjct: 188 -MFKLALK-ECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNE 245
Query: 193 NLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVI 239
NLK++ GDM + IPPA+A L K ILK +EAI+ G+ GKVIIIDI I
Sbjct: 246 NLKFVGGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISI 305
Query: 240 NAXXXXXXXXXXKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEV 299
+ + +D+VM GKER + EW KL DA FS YKITPI G KSLIEV
Sbjct: 306 DEASGDRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEV 365
Query: 300 YP 301
+P
Sbjct: 366 FP 367
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 111/267 (41%), Positives = 168/267 (62%)
Query: 49 QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIK 108
+E+AY LT AS LL++ +P ++P DP + + LS WF+ + ++T +G+
Sbjct: 101 EEDAYSLTPASRLLLRSEPLSVAPFALAMSDPVYTETWHHLSEWFRNDAVAAFDTKYGMT 160
Query: 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIIS 168
F E+ + +N FNEAMA D+ + S ++ +EC++IF+GL S+VDVGGG + ++ I+
Sbjct: 161 FPEYAVADDRLNVLFNEAMACDAGFVNS-ILTTECREIFDGLESMVDVGGGTGATAKGIA 219
Query: 169 EAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA----FLF---------KI 215
AFPG++CTVLDLP+ V L ++NL +++GDM FIP A+A F+ KI
Sbjct: 220 AAFPGMECTVLDLPNVVGGLKGSENLSFVSGDMFDFIPHADAIFMKFILHDWNDEECVKI 279
Query: 216 LKKRREAIA-SNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKERTESEWA 274
LKK +EAI+ SN K+I+++IV+ K FD+ M TGKER+E EW
Sbjct: 280 LKKCKEAISRSNNSCRKIILVEIVMEDEKETHEATETKLFFDMQMLAIITGKERSEKEWG 339
Query: 275 KLFFDAVFSHYKITPIFGMKSLIEVYP 301
KLFFDA F++YKIT + G++S+IEV+P
Sbjct: 340 KLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 115/273 (42%), Positives = 163/273 (59%)
Query: 46 VNGQEEA-YGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTE--LTLWE 102
++G+ E Y LT +S +L+K +P L V DP + ++SLS W++ + T +E
Sbjct: 86 LDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESLSDWYQNEDDSSTAFE 145
Query: 103 TVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVS 162
T HG FW + +++ + FNEAMASDS++++ ++ E K +FEGL SLVD+GGG +
Sbjct: 146 TAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLI-GEYKFLFEGLASLVDIGGGTGT 204
Query: 163 FSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA-FL--------- 212
++ I++ FP +KCTV DLPH VANL +N++++AGDM IP ANA FL
Sbjct: 205 IAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAGDMFEKIPSANAIFLKWILHDWND 264
Query: 213 ---FKILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKERT 269
KILK ++AI + G GKVIIID+V+ + + D+ M VN KER
Sbjct: 265 EDCVKILKSCKKAIPAKG--GKVIIIDMVMYSDKKDDHLVKTQTSMDMAMLVNFAAKERC 322
Query: 270 ESEWAKLFFDAVFSHYKITPIFGM-KSLIEVYP 301
E EWA LF +A FS YKI P +SLIEVYP
Sbjct: 323 EKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 112/306 (36%), Positives = 169/306 (55%)
Query: 26 RAITLSELVSALDIQPTKTTVN----GQEEAYGLTAASTLLIKDKPYC---LSPTVSVFV 78
R +T+S + +QP+ T++ G+E Y LT AS+LL+ + LSP ++ +
Sbjct: 74 RVLTVSGTFTI--VQPSAETMSSESDGREPVYKLTTASSLLVSSESSATASLSPMLNHVL 131
Query: 79 DPFFVAPFQ-SLSSWFKGTE------LTLWETVHGIKFWEFMNQNPAINQRFNEAMASDS 131
PF +P L++WF+ E + + ++G WE ++ AIN FN AMA+DS
Sbjct: 132 SPFRDSPLSMGLTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADS 191
Query: 132 EIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEA 191
+ ++K E ++F G+ SLVDV GG + I+ AFP +KCTVLDLPH VA P +
Sbjct: 192 NFLMQILLK-EFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSS 250
Query: 192 D--NLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIID 236
N++++ GDM IPPAN L K ILK ++AI S GK+IIID
Sbjct: 251 SIGNVQFVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSRDAGGKIIIID 310
Query: 237 IVINAXXXXXXXXXXKFLFDI-VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKS 295
+V+ + + ++D+ +M + G ER E EW K+F +A F YKI PI G++S
Sbjct: 311 VVVGSDSSDTKLLETQVIYDLHLMKIG--GVERDEQEWKKIFLEAGFKDYKIMPILGLRS 368
Query: 296 LIEVYP 301
+IE+YP
Sbjct: 369 IIELYP 374
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 121/309 (39%), Positives = 169/309 (54%)
Query: 24 HGRAITLSELVSALDIQPTKT----------TVNG---QEE--AYGLTAASTLLIKDKPY 68
HG+ + LS+L ++L I P+K G +EE Y LT + LL+K+ P
Sbjct: 43 HGKPMALSDLTNSLPINPSKAPYIYRLMRILVAAGYFSEEEKNVYSLTPFTRLLLKNDPL 102
Query: 69 -CLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAM 127
+S + V A + ++S WF+ +LT +ET HG FW+F ++ + F+ M
Sbjct: 103 NSISMVLGVNQIAELKA-WNAMSEWFQNEDLTAFETAHGKNFWDFGAEDK-YGKNFDGVM 160
Query: 128 ASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVAN 187
A+DS I+ S ++ E +FEGL SLVDVGGG + ++ I+++FP +KCTV DLPH VAN
Sbjct: 161 AADS-ILVSKMLIPEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVAN 219
Query: 188 LPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVII 234
L +NL+++ GDM IP ANA L K +LK R+AI + GKVI+
Sbjct: 220 LESTENLEFVGGDMFEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVIL 279
Query: 235 IDIVINAXXXXXXXXXXKFLF--DIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFG 292
I+ V+ K DI M V T KERTE EWA LF +A FS YKI P+
Sbjct: 280 IETVLMDSKKHENEEAVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMID 339
Query: 293 MKSLIEVYP 301
+S IEVYP
Sbjct: 340 FRSPIEVYP 348
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 71/218 (32%), Positives = 104/218 (47%)
Query: 41 PTKTTVNGQEEAYGLTAAST-LLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFK---- 94
PTK +G Y T S L+I + L+P V P +AP+ LSS
Sbjct: 100 PTK---DGLATGYVNTPLSRRLMITRRDGKSLAPFVLFETTPEMLAPWLRLSSVVSSPVN 156
Query: 95 GTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLV 154
G+ ++ VHG W F NP ++ NEAMA D+ + V + C +F+G+ ++V
Sbjct: 157 GSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGA-CHGLFDGVTTMV 215
Query: 155 DVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA-FL- 212
DVGGG ++ + FP IK DLPH + D ++ + GDM IP +A F+
Sbjct: 216 DVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVENVEGDMFDSIPACDAIFIK 275
Query: 213 -----------FKILKKRREAIASNGERGKVIIIDIVI 239
KILK +EA+ N GKV+I++ VI
Sbjct: 276 WVLHDWGDKDCIKILKNCKEAVPPN--IGKVLIVESVI 311
|
|
| UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 71/272 (26%), Positives = 125/272 (45%)
Query: 42 TKTTVNG-QEEAYGLTAASTLLIKDKPYCLSPTVSVFVD-PFFVAPFQSLSSWFKGTELT 99
T+T +G E YGL+ L+ D+ + + F+ P + + + ++
Sbjct: 102 TRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDID 161
Query: 100 LWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGG 159
L++ VHG+ +EFM ++ +NQ FN++M T E FEG+ +LVDVGGG
Sbjct: 162 LFKNVHGVTKYEFMGKDKKMNQIFNKSMVD--VCATEMKRMLEIYTGFEGISTLVDVGGG 219
Query: 160 NVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFKIL--- 216
+ +I +P IK DLP + N P ++++ GDM +P +A + K +
Sbjct: 220 SGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHN 279
Query: 217 --KKRREAIASNGER-----GKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKERT 269
++ SN + GKVII++ ++ D +M + G+ERT
Sbjct: 280 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERT 339
Query: 270 ESEWAKLFFDAVFSHYKIT-PIFGMKSLIEVY 300
E ++ KL + FS +++ F ++E Y
Sbjct: 340 EKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 3.0e-20, P = 3.0e-20
Identities = 80/274 (29%), Positives = 134/274 (48%)
Query: 48 GQEE-AYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVH 105
G+E AYGL LIKD+ + ++P V + L+ + + WE +
Sbjct: 97 GRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERAN 156
Query: 106 GIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGG-NVSFS 164
+E+M +N + + FNE+M + + I+ ++++ FEG+ VDVGG + +
Sbjct: 157 EALIFEYMKKNENLKKIFNESMTNHTSIVMKKILENYIG--FEGVSDFVDVGGSLGSNLA 214
Query: 165 RIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK---------- 214
+I+S+ +P IK DLPH V P+ +++I GDM IP L K
Sbjct: 215 QILSK-YPHIKGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEK 273
Query: 215 ---ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLF-DI-VMSVNATGKERT 269
ILK ++A+ E G++I+I++++ L D+ +MS+ + GKERT
Sbjct: 274 CVEILKNCKKALP---ETGRIIVIEMIVPREVSETDLATKNSLSADLTMMSLTSGGKERT 330
Query: 270 ESEWAKLFFDAVFSHYKITPIFGMKS--LIEVYP 301
+ E+ L +A F KI I+G S +IE+YP
Sbjct: 331 KKEFEDLAKEAGFKLPKI--IYGAYSYWIIELYP 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | FOMT1 | flavonoid o-methyltransferase related (359 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 301 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 5e-64 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-07 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 5e-64
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 21/243 (8%)
Query: 49 QEEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGI 107
E YGLT AS LL+K + L+P + ++ DP + + L + +E G+
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVR-EGGPPFERAFGM 61
Query: 108 KFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRII 167
F+E++ +P N+ FN AMA+ S ++ ++ E F GL SLVDVGGG + + I
Sbjct: 62 PFFEYLGADPEFNRVFNRAMAAHSRLVMKKIL--ETAFDFSGLSSLVDVGGGTGALAAAI 119
Query: 168 SEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK------------- 214
A+P IK V DLPH +A+ P AD ++++ GD +P A+A L K
Sbjct: 120 VRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVK 179
Query: 215 ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274
ILK+ EA+ GKVI++++V+ + ++ TE L D+ M V GKERTE EW
Sbjct: 180 ILKRCYEALPPG---GKVIVVEMVLPEDPDDDLETE-VLLLDLNMLVLNGGKERTEKEWR 235
Query: 275 KLF 277
KL
Sbjct: 236 KLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 49/258 (18%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 19 LYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAASTLLIKDKP 67
L+ + L+ L + P + +N ++ + LT + + P
Sbjct: 15 LFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTP 74
Query: 68 YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHG-IKFWEFMNQNPAINQR--FN 124
+ + +++ + L + V G F + P + +
Sbjct: 75 KEPNLHQTPVAK--------AMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYF 126
Query: 125 EAM-ASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH 183
E + S+++ +++ + +G+ ++DVGGG S + + FP + T+L+LP
Sbjct: 127 EEIHRSNAKFAIQLLLE---EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPG 183
Query: 184 AVANLPE-------ADNLKYIAGDMLRF-IPPANAFLFK-------------ILKKRREA 222
A+ + E AD ++ IA D+ + P A+A LF + KK +A
Sbjct: 184 AIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDA 243
Query: 223 IASNGERGKVIIIDIVIN 240
+ S G+++I+D+VI+
Sbjct: 244 MRSG---GRLLILDMVID 258
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.73 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.71 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.66 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.66 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.65 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.65 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.61 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.6 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.55 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.55 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.54 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.53 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.52 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.51 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.51 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.49 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.46 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.46 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.45 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.43 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.42 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.41 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.4 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.4 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.39 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.38 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.36 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.35 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.34 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.34 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.34 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.32 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.28 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.27 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.24 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.23 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.22 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.21 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.18 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.17 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.17 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.17 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.17 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.16 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.15 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.15 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.13 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.11 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.09 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.08 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.08 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.08 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.08 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.07 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.07 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.06 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.06 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.06 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.06 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.05 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.05 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.04 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.04 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.03 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.03 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.03 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.02 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.02 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.02 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.02 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.01 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.01 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.0 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.0 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.0 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.99 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.99 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.99 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.98 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.98 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.97 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.96 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.94 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.93 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.91 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.91 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.89 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.89 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.87 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.86 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.84 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.82 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.82 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.82 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.8 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.79 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.79 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.78 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.78 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.78 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.76 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.75 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.74 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.74 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.73 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.73 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.72 | |
| PLN02366 | 308 | spermidine synthase | 98.72 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.69 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.67 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.66 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.65 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.63 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.63 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.58 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.55 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.55 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.55 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.53 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.52 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.52 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.51 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.5 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.49 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.44 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.43 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.41 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.38 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.37 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.32 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.31 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.3 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.3 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.29 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.29 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.29 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.29 | |
| PLN02823 | 336 | spermine synthase | 98.29 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.26 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.25 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.25 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.24 | |
| PLN02476 | 278 | O-methyltransferase | 98.23 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.22 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.2 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.18 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.18 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.18 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.18 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.14 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.14 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.08 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.07 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.07 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.06 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.06 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.05 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.04 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.04 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.03 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.03 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.02 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.01 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.98 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.97 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.95 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.92 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.89 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.89 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.83 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.82 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.8 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.79 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.78 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.75 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.71 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.68 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.64 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.63 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.54 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.51 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.44 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.43 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.42 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.41 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.37 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.36 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.35 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.34 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.34 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.32 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.3 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.28 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.28 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.21 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.15 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.13 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.12 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.12 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.07 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.06 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.99 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.93 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.93 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.9 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.89 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.87 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.82 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.8 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.78 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.75 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.75 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.74 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.72 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.67 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.63 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.61 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.61 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.5 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.45 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.35 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.3 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.25 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.22 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.21 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.08 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.86 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.81 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.75 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.55 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.53 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.5 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.47 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.47 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.43 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.39 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.29 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.29 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.25 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.2 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 95.17 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.97 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 94.94 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.89 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 94.77 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.64 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 94.6 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.45 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 94.32 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.32 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 94.23 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.14 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.12 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.78 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.38 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.28 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 92.4 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 92.2 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 91.24 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 90.74 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 90.36 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 90.36 | |
| PRK01381 | 99 | Trp operon repressor; Provisional | 90.35 | |
| TIGR01321 | 94 | TrpR trp operon repressor, proteobacterial. This m | 89.6 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.62 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 88.27 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 86.99 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 86.58 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 85.66 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 85.44 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 85.3 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 85.21 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 84.55 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 80.06 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=294.42 Aligned_cols=224 Identities=31% Similarity=0.598 Sum_probs=194.6
Q ss_pred cCCCeEEcChhcchhhcCCC-CChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHH
Q 043533 48 GQEEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEA 126 (301)
Q Consensus 48 ~~~~~y~~t~~s~~L~~~~~-~~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~a 126 (301)
+++++|+||+.|+.|..+++ .++..++.++.....+++|.+|++++++|+ ++|+.++|.++|+|+.++|+..+.|+++
T Consensus 1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 79 (241)
T PF00891_consen 1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAA 79 (241)
T ss_dssp SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHH
T ss_pred CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHH
Confidence 46899999999996665554 678888887656788999999999999998 8899999999999999999999999999
Q ss_pred hhcccccch-HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC
Q 043533 127 MASDSEIMT-SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFI 205 (301)
Q Consensus 127 m~~~~~~~~-~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~ 205 (301)
|...+.... +.++ +.++ +++.++|||||||+|.++.+++++||+++++++|+|+|++.+++.+||++++||||+++
T Consensus 80 m~~~~~~~~~~~~~-~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~ 156 (241)
T PF00891_consen 80 MAEYSRLNAFDILL-EAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPL 156 (241)
T ss_dssp HHHHHHHHHHHHHH-HHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCC
T ss_pred HHhhhhcchhhhhh-cccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhh
Confidence 999888776 7778 8888 88889999999999999999999999999999999999999988999999999999989
Q ss_pred CcchhHHH-------------HHHHHHHHhcccCCCC--cEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 206 PPANAFLF-------------KILKKRREAIASNGER--GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 206 p~~D~i~~-------------~iL~~~~~aL~p~~~g--g~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
|.+|+|++ +||++++++|+| | |+|+|+|.++++....+........+|++|++.++|++||.
T Consensus 157 P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~ 233 (241)
T PF00891_consen 157 PVADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTE 233 (241)
T ss_dssp SSESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEH
T ss_pred ccccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCH
Confidence 99999998 999999999999 8 99999999999988775322223579999999888999999
Q ss_pred HHHHHHHH
Q 043533 271 SEWAKLFF 278 (301)
Q Consensus 271 ~e~~~ll~ 278 (301)
+||++||+
T Consensus 234 ~e~~~ll~ 241 (241)
T PF00891_consen 234 EEWEALLK 241 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=255.84 Aligned_cols=281 Identities=23% Similarity=0.322 Sum_probs=238.2
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHhcCCCCCC------ce----------e----ecCCCeEEcChhcchhhc-CCCCChh
Q 043533 13 FQGQAQLYKLIHGRAITLSELVSALDIQPTK------TT----------V----NGQEEAYGLTAASTLLIK-DKPYCLS 71 (301)
Q Consensus 13 ~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~------l~----------v----e~~~~~y~~t~~s~~L~~-~~~~~l~ 71 (301)
-+++||+||+|++.+- ..|+|-.+-. +.. +. + ......|.++|.++++.+ ++-.++.
T Consensus 25 ~A~eL~v~d~l~~~~~-p~~ia~~l~~-~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~a 102 (342)
T KOG3178|consen 25 AACELGVFDILANAGS-PSEIASLLPT-PKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSLA 102 (342)
T ss_pred HHHHcChHHHHHhCCC-HHHHHHhccC-CCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCCCCchh
Confidence 3579999999987544 8888888874 222 11 1 112228999999996554 4446888
Q ss_pred hhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCC
Q 043533 72 PTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLG 151 (301)
Q Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
.++...+++..++.|..|.++++.|+ .+|..++|...|+|...++.....|+++|...+......++ +.+. +|++..
T Consensus 103 ~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il-~~~~-Gf~~v~ 179 (342)
T KOG3178|consen 103 PLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKIL-EVYT-GFKGVN 179 (342)
T ss_pred HHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhh-hhhc-ccccCc
Confidence 88888878899999999999999998 67999999889999999999999999999999888887788 7776 588899
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCeEEEeCCCCCCCCcchhHHH-------------HHHH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEA-DNLKYIAGDMLRFIPPANAFLF-------------KILK 217 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~-~ri~~~~~D~~~~~p~~D~i~~-------------~iL~ 217 (301)
..||||||.|..+..++.+||+++++.+|+|.+++.++.. +.|+.+.||+|++.|..|+|++ ++|+
T Consensus 180 ~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLk 259 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILK 259 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHH
Confidence 9999999999999999999999999999999999999875 8899999999999999999998 9999
Q ss_pred HHHHhcccCCCCcEEEEEeeeeCC-Cccchhhhhhhhhhchhhcccc-CCccCCHHHHHHHHHhCCCceeEEEecCCcee
Q 043533 218 KRREAIASNGERGKVIIIDIVINA-EEEEHELTETKFLFDIVMSVNA-TGKERTESEWAKLFFDAVFSHYKITPIFGMKS 295 (301)
Q Consensus 218 ~~~~aL~p~~~gg~l~i~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 295 (301)
+|+++|+| ||+|+|.|.+.++ ...++.........|+.|+... +|++|+..||..++.++||.+..+...+..++
T Consensus 260 nC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~ 336 (342)
T KOG3178|consen 260 NCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYS 336 (342)
T ss_pred HHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccc
Confidence 99999999 9999999998886 3322211122456888888875 59999999999999999999999999999999
Q ss_pred EEEEeC
Q 043533 296 LIEVYP 301 (301)
Q Consensus 296 ~i~a~~ 301 (301)
+||++|
T Consensus 337 ~Ie~~k 342 (342)
T KOG3178|consen 337 VIEFHK 342 (342)
T ss_pred hheeCC
Confidence 999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=259.45 Aligned_cols=257 Identities=20% Similarity=0.345 Sum_probs=184.6
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcc-hhhcCCCC---Chhhhhhhhc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAAST-LLIKDKPY---CLSPTVSVFV 78 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~-~L~~~~~~---~l~~~~~~~~ 78 (301)
+++|||||+|.++|.|++|||+++|++++.++ +++++++|+||+.++ +|..+++. ++..+..+..
T Consensus 10 a~~Lglfd~L~~gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (306)
T TIGR02716 10 AIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA 89 (306)
T ss_pred HHHcCcHHHHhcCCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhhcCchHHHHH
Confidence 57999999999999999999999999999987 156679999999998 55554432 2223333331
Q ss_pred CccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhh-cccccchHHHHHhhhhhcccCCCeEEEec
Q 043533 79 DPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA-SDSEIMTSFVVKSECKQIFEGLGSLVDVG 157 (301)
Q Consensus 79 ~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~-~~~~~~~~~~~~~~~~~~~~~~~~vlDvG 157 (301)
......|.+|.+++|++. +|+..++ +....++.. .|...|. .......+.++ +.++ +++..+|||||
T Consensus 90 -~~~~~~~~~l~~~~r~~~--~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~--~~~~~~vlDiG 157 (306)
T TIGR02716 90 -FLADDFYMGLSQAVRGQK--NFKGQVP-----YPPVTREDN-LYFEEIHRSNAKFAIQLLL-EEAK--LDGVKKMIDVG 157 (306)
T ss_pred -HHHHHHHHhHHHHhcCCc--ccccccC-----CCCCCHHHH-HhHHHHHHhcchhHHHHHH-HHcC--CCCCCEEEEeC
Confidence 123467999999998543 3432222 111222222 3444444 33334456677 7776 78889999999
Q ss_pred CCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH-------------HHH
Q 043533 158 GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF-------------KIL 216 (301)
Q Consensus 158 gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~-------------~iL 216 (301)
||+|.+++.+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|.+|+|++ ++|
T Consensus 158 ~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il 237 (306)
T TIGR02716 158 GGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMC 237 (306)
T ss_pred CchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHH
Confidence 999999999999999999999999999987753 5789999999997 6777898765 699
Q ss_pred HHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh-hhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 217 KKRREAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 217 ~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
++++++|+| ||+++|+|.+.++..... +.... ....+.|.... ...++.+||.+||+++||+.+++
T Consensus 238 ~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 238 KKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEe
Confidence 999999999 999999999887654321 11111 11112222111 12345899999999999998875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=140.77 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=112.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
..+.+|||||||||.++..+++..+..+++++|. +.|++.+++ ...|+|+.+|+.+ |+|+ ||+|.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 999999886 1239999999999 9997 999988
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh-hccc-----------------cCCccC
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV-MSVN-----------------ATGKER 268 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~-----------------~~g~~r 268 (301)
+.|++++|+|+| ||+++++|+..+...... .....+... .+.. ..-+..
T Consensus 130 rnv~d~~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hcCCCHHHHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999999999999 999999999887664321 111111111 1111 111346
Q ss_pred CHHHHHHHHHhCCCceeEEEecC-CceeEEE
Q 043533 269 TESEWAKLFFDAVFSHYKITPIF-GMKSLIE 298 (301)
Q Consensus 269 t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~ 298 (301)
+.+++.++++++||+.+...... |...+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 88999999999999999976664 3334433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-18 Score=146.72 Aligned_cols=157 Identities=14% Similarity=0.202 Sum_probs=78.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
..++ +... ...+.+|||||||||.++..++++. |+.+++++|+ ++|++.|++ ..+|+++.+|+.+ |+|
T Consensus 37 ~~~~-~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 37 RKLI-KLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp SHHH-HHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-
T ss_pred HHHH-hccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC
Confidence 3455 5444 5667899999999999999999874 6789999999 999999875 3589999999988 888
Q ss_pred c--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-----cC----
Q 043533 207 P--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-----AT---- 264 (301)
Q Consensus 207 ~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~---- 264 (301)
+ ||+|++ +.|++++++||| ||+++|+|...|....-. ....++-...+.. .+
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~---~~~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKP---GGRLVILEFSKPRNPLLR---ALYKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHH---HHHHH-------------------
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCC---CeEEEEeeccCCCCchhh---ceeeeeeccccccccccccccccc
Confidence 6 999987 999999999999 999999999887753211 1110000000000 00
Q ss_pred --------CccCCHHHHHHHHHhCCCceeEEEecC-CceeEEEEeC
Q 043533 265 --------GKERTESEWAKLFFDAVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 265 --------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
....+.+|+.++++++||+.++.++.. |.-.+..++|
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 123478999999999999999987764 4455555543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=133.88 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=110.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCc--chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLR-FIPP--ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~-~~p~--~D~i~ 212 (301)
..+..+|||||||+|.++..+++.+ |+.+++++|+ ++|++.|++ .++++++.+|+.+ |+++ ||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 6789999999 899988753 2479999999987 7775 99887
Q ss_pred H-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh--ccc-cC------------Cc
Q 043533 213 F-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM--SVN-AT------------GK 266 (301)
Q Consensus 213 ~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~--~~~-~~------------g~ 266 (301)
+ ++|++++++|+| ||+++++|...+.....+.+. ...+...+ +.. .+ ..
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 6 899999999999 999999998765543221110 00111000 000 00 23
Q ss_pred cCCHHHHHHHHHhCCCceeEEEecC-CceeEEEEe
Q 043533 267 ERTESEWAKLFFDAVFSHYKITPIF-GMKSLIEVY 300 (301)
Q Consensus 267 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~ 300 (301)
.++.+|+.++++++||+.++..... +...+..|+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 5699999999999999999988774 455666654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=133.87 Aligned_cols=157 Identities=16% Similarity=0.230 Sum_probs=115.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
..++ ..++ .....+|||+|||+|.++..+++.. |+.+++++|+ +++++.+++ .++++++.+|+.+ +++
T Consensus 35 ~~~l-~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTM-KRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHH-HhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 4455 5555 6667899999999999999999885 6789999999 888877663 3589999999977 666
Q ss_pred c--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh-hhhchh--------------
Q 043533 207 P--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIV-------------- 258 (301)
Q Consensus 207 ~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~-~~~d~~-------------- 258 (301)
. +|+|++ ++|+++++.|+| ||.+++.+...+.... +.... ..+...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 4 898876 899999999999 9999988865443221 11100 001000
Q ss_pred --hccccCCccCCHHHHHHHHHhCCCceeEEEecC-CceeEEEEeC
Q 043533 259 --MSVNATGKERTESEWAKLFFDAVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 259 --~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
.+........+.++++++|+++||+++++.... |...++.++|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 186 YSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 000011134688999999999999999998875 7788888876
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=130.53 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=103.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCc--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG------IKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~------~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~-~~p~-- 207 (301)
.....++|||+||||.++..++++-+. .+++++|+ |+|++.+++ ..++.|+.+|+.+ |+|+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 344579999999999999999999877 78999999 999987764 4569999999998 9997
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh--hhhchh---------------h
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK--FLFDIV---------------M 259 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~--~~~d~~---------------~ 259 (301)
+|.|++ +.|++++++||| ||++.++|+---++.. +..+. ..++.. +
T Consensus 178 ~D~yTiafGIRN~th~~k~l~EAYRVLKp---GGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQKALREAYRVLKP---GGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred ceeEEEecceecCCCHHHHHHHHHHhcCC---CcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence 999998 999999999999 9999999974433211 11111 122221 1
Q ss_pred ccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 260 SVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 260 ~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
|+..=-+.++.+|++.+.++|||..+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 111112456899999999999999997
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-16 Score=138.22 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=106.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~--- 213 (301)
....+|||||||+|.++..++++ +|+.+++++|+ +++++.|++ ..+++++.+|+.+ +++.+|++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 45679999999999999999987 48899999999 999988864 3579999999987 6666786654
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh-hhhh-hh-----h---chhh--cc-ccCCccCCH
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL-TETK-FL-----F---DIVM--SV-NATGKERTE 270 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~-~~~~-~~-----~---d~~~--~~-~~~g~~rt~ 270 (301)
.+|++++++|+| ||.+++.|.+.+++....+. .... .+ + .+.. .. ...-...|.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 789999999999 99999999877654332111 0000 00 0 0000 00 011235799
Q ss_pred HHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
+++.++++++||+.+++........++.++
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 999999999999987654433334444443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=130.56 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=107.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
..++ +.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .++|+++.+|+.+ ++|+
T Consensus 42 ~~~l-~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKIL-SDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHH-HhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 4466 6665 6778899999999999999998876 679999999 888777664 4689999999987 7764
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ ++|++++++|+| ||++++.+.......... . .... ++........+.++|.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYG 187 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHH
Confidence 898775 789999999999 999999988655432111 1 0110 0111112346899999
Q ss_pred HHHHhCCCceeEEEecC
Q 043533 275 KLFFDAVFSHYKITPIF 291 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~~ 291 (301)
++|+++||++++.....
T Consensus 188 ~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 188 DLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHCCCCeeeEEeCc
Confidence 99999999999987753
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=128.42 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=100.1
Q ss_pred cCCCeEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISE--AFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~--~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~--- 213 (301)
.+..+|||||||+|..+..+++ .+|+.+++++|. +++++.+++ ..+|+++.+|+.+ +.+.+|+|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4568999999999999999988 468999999999 999998864 3489999999987 6666887765
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh-hhhhh-h---hhchh-----hcc-ccC--CccCCH
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE-LTETK-F---LFDIV-----MSV-NAT--GKERTE 270 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~-~~~~~-~---~~d~~-----~~~-~~~--g~~rt~ 270 (301)
.++++++++|+| ||.+++.|.+...+....+ +.... . ...+. -.. ... -...|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 789999999999 9999999976655433211 10000 0 00100 000 001 123589
Q ss_pred HHHHHHHHhCCCceeEEE
Q 043533 271 SEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~ 288 (301)
++..+||++|||+.+...
T Consensus 212 ~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 212 ETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHcCchhHHHH
Confidence 999999999999987643
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=131.52 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=100.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++|+|+.+|+.+ ++++ ||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 789999999 788776653 3689999999987 7764 999886
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhhh-hhhhhchhhccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEH-ELTE-TKFLFDIVMSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~~-~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
++|++++++|+| ||+++|.+.......... .+.. ....++.......-....+.++|.++++++||+
T Consensus 196 ~~h~~d~~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCHHHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 899999999999 999999886433211110 0000 001111110000111234899999999999999
Q ss_pred eeEEEec
Q 043533 284 HYKITPI 290 (301)
Q Consensus 284 ~~~~~~~ 290 (301)
++++..+
T Consensus 273 ~v~~~d~ 279 (340)
T PLN02244 273 DIKTEDW 279 (340)
T ss_pred eeEeeeC
Confidence 9988765
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=121.46 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=113.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
..++ ..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.
T Consensus 41 ~~~~-~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 41 RKTI-KWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHH-HHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 3345 4444 34567999999999999999999998 789999999 777776654 3579999999987 44
Q ss_pred C-c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-----ccC---
Q 043533 206 P-P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-----NAT--- 264 (301)
Q Consensus 206 p-~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~--- 264 (301)
+ . +|+|++ .+|+++.+.|+| ||.+++++...+...... .....+...++. ..+
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcH
Confidence 4 3 898875 899999999999 899999988665432110 000000000000 000
Q ss_pred ---------CccCCHHHHHHHHHhCCCceeEEEec-CCceeEEEEeC
Q 043533 265 ---------GKERTESEWAKLFFDAVFSHYKITPI-FGMKSLIEVYP 301 (301)
Q Consensus 265 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~a~~ 301 (301)
...++.++|.++|+++||+.+.+... .+...++.|++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 12457899999999999999999886 46788988875
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=123.81 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=101.1
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--cchhHH
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIP--PANAFL 212 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p--~~D~i~ 212 (301)
..++ +.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+..+ .||+|+
T Consensus 19 ~~ll-~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLL-ARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHH-HhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 4567 6666 56678999999999999999999999999999999 899998874 478999999865223 399888
Q ss_pred H-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh--hhhchhh--ccc-cCCccCCHHHHHHH
Q 043533 213 F-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK--FLFDIVM--SVN-ATGKERTESEWAKL 276 (301)
Q Consensus 213 ~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~--~~~d~~~--~~~-~~g~~rt~~e~~~l 276 (301)
+ ++|++++++|+| ||++++.................. ..+.-.+ ... ......+.++|.++
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 7 899999999999 898887532111111000000000 0011000 001 12235689999999
Q ss_pred HHhCCCceeEEE
Q 043533 277 FFDAVFSHYKIT 288 (301)
Q Consensus 277 l~~aGf~~~~~~ 288 (301)
|+++||++..+.
T Consensus 172 l~~aGf~v~~~~ 183 (255)
T PRK14103 172 LTDAGCKVDAWE 183 (255)
T ss_pred HHhCCCeEEEEe
Confidence 999999865433
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-14 Score=120.27 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=112.5
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
.++ +.+. .....+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ .+++.++.+|+.+ +++.
T Consensus 30 ~~~-~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 30 RAV-KLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHH-HHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 344 4444 345789999999999999999999987 79999999 777776654 3679999999987 5543
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccC------------
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT------------ 264 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------ 264 (301)
+|+|++ .+|+++++.|+| ||++++.+...+.... +......+...++....
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKP---GGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCC---CcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 898865 899999999999 9999998876544321 10000111111111000
Q ss_pred -----CccCCHHHHHHHHHhCCCceeEEEecCC-ceeEEEEeC
Q 043533 265 -----GKERTESEWAKLFFDAVFSHYKITPIFG-MKSLIEVYP 301 (301)
Q Consensus 265 -----g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~a~~ 301 (301)
....+..+|.++|+++||+.+.+.+..+ ...++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1235789999999999999999998865 467787775
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-14 Score=128.65 Aligned_cols=128 Identities=27% Similarity=0.301 Sum_probs=100.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--chhHHH--------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--ANAFLF-------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D~i~~-------- 213 (301)
...+|||||||+|.++..+++..|..+++++|. +++++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 888887765 4679999999987 6654 998876
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
++|++++++|+| ||++++++...++.... ....+..+ ..++.+|+.++|+++||+.+++..+
T Consensus 193 d~~~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~------r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DPQRGIKEAYRVLKI---GGKACLIGPVHPTFWLS------RFFADVWM------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CHHHHHHHHHHhcCC---CcEEEEEEecCcchhHH------HHhhhhhc------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 899999999999 99998887654321110 11112221 1358999999999999999998876
Q ss_pred C
Q 043533 291 F 291 (301)
Q Consensus 291 ~ 291 (301)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 4
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=133.96 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=105.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--c
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--A 208 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~ 208 (301)
++ +.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +++++.|++ ..+++|+.+|+++ ++|. |
T Consensus 258 l~-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 258 FV-DKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HH-HhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 45 5454 5567799999999999999999876 789999999 788887753 4589999999987 6664 9
Q ss_pred hhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHH
Q 043533 209 NAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLF 277 (301)
Q Consensus 209 D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll 277 (301)
|+|++ ++|++++++|+| ||++++.+.........+ ..... +...+...++..+|.+++
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~-----~~~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY-----IKQRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH-----HHhcCCCCCCHHHHHHHH
Confidence 99887 899999999999 999999887654432221 11111 111234567899999999
Q ss_pred HhCCCceeEEEec
Q 043533 278 FDAVFSHYKITPI 290 (301)
Q Consensus 278 ~~aGf~~~~~~~~ 290 (301)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999977654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=118.69 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=97.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH-------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~------- 213 (301)
++|||||||+|.++..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+. ||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777776653 4689999999976 5666 999886
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
.+|+++++.|+| ||++++.+...+..... .. + .......+..+|.++++++||+.++...
T Consensus 81 ~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~------~~--~-----~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDKMDLFSNISRHLKD---GGHLVLADFIANLLSAI------EH--E-----ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCHHHHHHHHHHHcCC---CCEEEEEEcccccCccc------cc--c-----ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 889999999999 99999988743321100 00 0 0011145899999999999999998876
Q ss_pred c
Q 043533 290 I 290 (301)
Q Consensus 290 ~ 290 (301)
+
T Consensus 145 ~ 145 (224)
T smart00828 145 A 145 (224)
T ss_pred C
Confidence 5
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=122.81 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=103.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~-- 213 (301)
+....+|||||||+|..+..+++. .|+.+++++|+ +.+++.+++ .+++++..+|+.+ ++++ ||+|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 566789999999999998887776 46778999999 888888875 3689999999977 6664 898875
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
++|++++++|+| ||++++.+......... ....++.+.....+...+..+|.++|+++||..
T Consensus 155 v~~~~~d~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 789999999999 99999998875443211 111222333223445678999999999999999
Q ss_pred eEEEe
Q 043533 285 YKITP 289 (301)
Q Consensus 285 ~~~~~ 289 (301)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=124.57 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=95.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-------~~~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
..++|||||||+|.++..+++.++. +++++|. +.++..++ ...+|.++.+|+.+ +.+. ||+|++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999999876 5999998 55443221 14589999999876 6554 998886
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
.+|++++++|+| ||.+++-+...+.+........ ..+..+. ..-..+|.+++.+||+++||+.+++
T Consensus 201 H~~dp~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~l~p~-~~y~~~~----~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVP---GGELVLETLVIDGDENTVLVPG-DRYAKMR----NVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ccCCHHHHHHHHHHhcCC---CcEEEEEEEEecCCCccccCch-hHHhcCc----cceeCCCHHHHHHHHHHcCCceEEE
Confidence 899999999999 8988776655554432110000 0111100 0012468999999999999999988
Q ss_pred Eec
Q 043533 288 TPI 290 (301)
Q Consensus 288 ~~~ 290 (301)
...
T Consensus 273 ~~~ 275 (322)
T PRK15068 273 VDV 275 (322)
T ss_pred EeC
Confidence 765
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-14 Score=107.68 Aligned_cols=84 Identities=21% Similarity=0.467 Sum_probs=71.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCC-CC-CCCc-chhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDM-LR-FIPP-ANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~-~~-~~p~-~D~i~~----- 213 (301)
..+|||||||+|.++..+++++|+.+++++|. |++++.+++ .+||+++.+|+ .. +.+. ||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57999999999999999999999999999999 888887764 68999999999 33 3333 776554
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 569999999999 88887764
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=120.78 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=94.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCC-cchhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMLR-FIP-PANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-------~~~ri~~~~~D~~~-~~p-~~D~i~~---- 213 (301)
.+.++|||||||+|.++..++..++. +++++|. +.++..+. ...++.+..+|+.+ +.. .||+|++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 44689999999999999999988765 7999998 65654321 24678888888765 433 3999876
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
..|++++++|+| ||.+++.+...+...... +....... .|. .....++.+++..||+++||+.++
T Consensus 199 ~H~~dp~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~--k~~--nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYA--KMK--NVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred hccCCHHHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHH--hcc--ccccCCCHHHHHHHHHHCCCeEEE
Confidence 899999999999 899988777665432210 00000000 000 001135899999999999999998
Q ss_pred EEec
Q 043533 287 ITPI 290 (301)
Q Consensus 287 ~~~~ 290 (301)
+...
T Consensus 271 i~~~ 274 (314)
T TIGR00452 271 ILDV 274 (314)
T ss_pred EEec
Confidence 8754
|
Known examples to date are restricted to the proteobacteria. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-14 Score=114.16 Aligned_cols=125 Identities=24% Similarity=0.299 Sum_probs=91.6
Q ss_pred CCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIIS-EAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~--- 213 (301)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +++++.|++ .++++|+.+|+.+ + ++. ||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5689999999999 999998875 4589999999998 5 434 998887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhh--hhchhhccccCCccCCHHHHHHHHHhCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKF--LFDIVMSVNATGKERTESEWAKLFFDAV 281 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~--~~d~~~~~~~~g~~rt~~e~~~ll~~aG 281 (301)
.+|+++.+.|++ ||.+++.+.......... +.+... .-.+.+.. .+. +.++|..+|++||
T Consensus 83 l~~~~~~~~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPEKVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMIY--IGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHHHHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHCC-------CCCGHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhhh--ccc--CHHHHHHHHHhcC
Confidence 899999999999 899988888722211111 111011 11112111 122 7889999999998
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=118.24 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=96.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC-c-chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--FIP-P-ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~~p-~-~D~i~~-- 213 (301)
+...+|||||||+|.++..+++. +.+++++|+ +++++.|++ .++++++.+|+.+ +.+ . ||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 44579999999999999999987 468999999 899988764 3679999999865 333 3 898886
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-----ccCCccCCHHHHHHHHHh
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-----NATGKERTESEWAKLFFD 279 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~g~~rt~~e~~~ll~~ 279 (301)
.+|++++++|+| ||.+++...........+.+..........+.. .......+.+++.++|++
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~ 197 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE 197 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence 789999999999 899887754322110000000000000000000 001124678999999999
Q ss_pred CCCceeEEEecCCce
Q 043533 280 AVFSHYKITPIFGMK 294 (301)
Q Consensus 280 aGf~~~~~~~~~~~~ 294 (301)
+||+++.+.-+.+++
T Consensus 198 aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 198 AGWQIMGKTGVRVFH 212 (255)
T ss_pred CCCeEeeeeeEEEEe
Confidence 999999877665443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=113.47 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=101.4
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-- 207 (301)
++ +.++ +....+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++..+|+.. +++.
T Consensus 11 ~~-~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 11 TF-ELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HH-HHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 44 5555 6677899999999999999999988 7889999999 777766653 4679999999876 5553
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh-hhhhhhhchhhccccCCccCCHHHHHH
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL-TETKFLFDIVMSVNATGKERTESEWAK 275 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~~g~~rt~~e~~~ 275 (301)
+|+|++ .++++++++|+| ||.+++.+.........+.. .......... ........+..+|.+
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFW--SDHFADPWLGRRLPG 162 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHH--HhcCCCCcHHHHHHH
Confidence 898776 799999999999 89999887532211110000 0001111111 011223456678999
Q ss_pred HHHhCCCceeEEEec
Q 043533 276 LFFDAVFSHYKITPI 290 (301)
Q Consensus 276 ll~~aGf~~~~~~~~ 290 (301)
+|+++||+.+.+...
T Consensus 163 ~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 163 LFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHcCCCceeEEEE
Confidence 999999998876543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=110.18 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=91.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-chhHH
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP-ANAFL 212 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~-~D~i~ 212 (301)
+.++ +....+|||||||+|.++..+++++|+.+++++|. +++++.+++ .++++++.+|...+++. +|+|+
T Consensus 25 ~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 25 SKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 4445 56778999999999999999999999999999999 888887764 35799999998655555 89888
Q ss_pred H--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 213 F--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 213 ~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
+ .+++++++.|+| ||++++..... -+..++.+++++.||+.
T Consensus 103 ~~~~~~~~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 103 IGGSGGNLTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSE 151 (187)
T ss_pred ECCCccCHHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCc
Confidence 6 799999999999 88876643210 12455677889999887
Q ss_pred eEEEec
Q 043533 285 YKITPI 290 (301)
Q Consensus 285 ~~~~~~ 290 (301)
+++..+
T Consensus 152 ~~~~~~ 157 (187)
T PRK08287 152 LDCVQL 157 (187)
T ss_pred ceEEEE
Confidence 765443
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=106.57 Aligned_cols=158 Identities=13% Similarity=0.205 Sum_probs=114.3
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--cchh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIP--PANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~ 210 (301)
+.+++ ..++ .....+|+|+|||+|..+..|++++|..+++++|. ++|++.|++ ..+++|..+|..+=.| ..|+
T Consensus 19 a~dLl-a~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 19 ARDLL-ARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHHHH-hhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccch
Confidence 34577 7777 78889999999999999999999999999999999 999999976 7899999999976333 4888
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhh-----hchhhcc--ccCCccCCHHH
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFL-----FDIVMSV--NATGKERTESE 272 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~-----~d~~~~~--~~~g~~rt~~e 272 (301)
++. ++|.++...|.| ||.+.+ . +|++...+.+..+... +.-.+-. .......+.+.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~P---gg~LAV-Q--mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAP---GGVLAV-Q--MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCC---CceEEE-E--CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 887 999999999999 774444 3 4666555422111111 1111111 01234568899
Q ss_pred HHHHHHhCCCceeEEEec-----CCceeEEEEeC
Q 043533 273 WAKLFFDAVFSHYKITPI-----FGMKSLIEVYP 301 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~-----~~~~~~i~a~~ 301 (301)
|-++|...+-++--++.+ ++...||+..|
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 999999998776544433 45677777653
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-13 Score=119.85 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=94.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
...+|||||||+|.++..+++ ++.+++++|. +++++.|+. ..+|+++.+|+.+ +.+. ||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998886 4679999999 888887763 2489999999866 5443 998886
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhc-cccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS-VNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+|+++++.|+| ||.+++......................+.-- .....+.++.+|+.++|+++||+++
T Consensus 209 eHv~d~~~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HhcCCHHHHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 999999999999 89888876522111000000000001111000 0012246799999999999999999
Q ss_pred EEEec
Q 043533 286 KITPI 290 (301)
Q Consensus 286 ~~~~~ 290 (301)
++..+
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 88554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=113.15 Aligned_cols=142 Identities=12% Similarity=0.177 Sum_probs=99.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--cchh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIP--PANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~ 210 (301)
+..++ +.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+..+ .+|+
T Consensus 20 ~~~ll-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 20 ARDLL-ARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHHHH-hhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccE
Confidence 45567 6666 67778999999999999999999999999999999 889988876 5679999999876323 3898
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh---hhh--hchhhccc--cCCccCCHHH
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET---KFL--FDIVMSVN--ATGKERTESE 272 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~---~~~--~d~~~~~~--~~g~~rt~~e 272 (301)
|++ ++|++++++|+| ||.+++.- +++...+..... ... +...+... ......+..+
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAP---GGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCC---CcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 876 899999999999 88877742 222211100000 000 00000000 1123467889
Q ss_pred HHHHHHhCCCcee
Q 043533 273 WAKLFFDAVFSHY 285 (301)
Q Consensus 273 ~~~ll~~aGf~~~ 285 (301)
+.+++.++|+.+.
T Consensus 171 ~~~~l~~~g~~v~ 183 (258)
T PRK01683 171 YYDALAPAACRVD 183 (258)
T ss_pred HHHHHHhCCCcee
Confidence 9999999998753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=126.65 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=109.4
Q ss_pred hhHHHHHhhhcC-CCCc-hhHHhhCCChhHHhhcCchHHHHHHHHhhccccc--chHHHHHhhhhhcccCCCeEEEecCC
Q 043533 84 APFQSLSSWFKG-TELT-LWETVHGIKFWEFMNQNPAINQRFNEAMASDSEI--MTSFVVKSECKQIFEGLGSLVDVGGG 159 (301)
Q Consensus 84 ~~~~~L~~~l~~-g~~~-~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~--~~~~~~~~~~~~~~~~~~~vlDvGgG 159 (301)
..-..|.++... .+.+ .+++ ....+|+++..+++..+.|...|...... ...... ..++ +.+..+|||||||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r-~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~-~i~d--~~~g~rVLDIGCG 428 (677)
T PRK06922 353 AVGEALITFCVEAEKIDMMHAR-ANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKR-IILD--YIKGDTIVDVGAG 428 (677)
T ss_pred HHHHHHHHHHHhhhhcchHHHH-HHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHH-HHhh--hcCCCEEEEeCCC
Confidence 344555555433 2212 2432 23468999988888888888777654332 122222 3445 4567899999999
Q ss_pred ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CCc--chhHHH---------------
Q 043533 160 NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-F--IPP--ANAFLF--------------- 213 (301)
Q Consensus 160 ~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~--~p~--~D~i~~--------------- 213 (301)
+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+ + ++. +|+|++
T Consensus 429 TG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g 508 (677)
T PRK06922 429 GGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEG 508 (677)
T ss_pred CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhccccc
Confidence 9999999999999999999999 778887764 3568888899866 3 443 787642
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
++|++++++|+| ||+++|.|...+++.
T Consensus 509 ~~f~~edl~kiLreI~RVLKP---GGrLII~D~v~~E~~ 544 (677)
T PRK06922 509 KKFNHEVIKKGLQSAYEVLKP---GGRIIIRDGIMTEDK 544 (677)
T ss_pred ccccHHHHHHHHHHHHHHcCC---CcEEEEEeCccCCch
Confidence 678999999999 999999997666543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=116.41 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=97.4
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.++ +.++.+|||||||-|.+++.+++++ +++++++.+ ++..+.+++ .+++++..+|+.+ ++
T Consensus 51 ~~~~~-~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~ 125 (273)
T PF02353_consen 51 LDLLC-EKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LP 125 (273)
T ss_dssp HHHHH-TTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHH-HHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cC
Confidence 34566 7776 8888999999999999999999998 899999999 565555432 5789999999865 33
Q ss_pred -cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh-hhhchhhccccCCccCCHH
Q 043533 207 -PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIVMSVNATGKERTES 271 (301)
Q Consensus 207 -~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~rt~~ 271 (301)
.||.|++ ..++++.+.|+| ||++++............ ..... .+..-. +..+|..++..
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~-~~~~~~~~i~ky--iFPgg~lps~~ 199 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA-ERRSSSDFIRKY--IFPGGYLPSLS 199 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH-CTTCCCHHHHHH--TSTTS---BHH
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh-hcCCCceEEEEe--eCCCCCCCCHH
Confidence 4898776 889999999999 899888777766543321 00000 112122 23678888999
Q ss_pred HHHHHHHhCCCceeEEEecC
Q 043533 272 EWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~~~ 291 (301)
++...++++||++..+....
T Consensus 200 ~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 200 EILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHHHTT-EEEEEEE-H
T ss_pred HHHHHHhcCCEEEEEEEEcC
Confidence 99999999999999887653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.2e-12 Score=108.09 Aligned_cols=144 Identities=12% Similarity=0.036 Sum_probs=97.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH-----------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF----------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~----------- 213 (301)
...+|||||||+|.++..+++.+ +.+++++|+ ++|++.+++. ..++.+|+.+ |+++ ||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46799999999999999999987 679999999 9999998753 3467889887 7775 999887
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCC-------------ccCCHHHHHHHHHh
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATG-------------KERTESEWAKLFFD 279 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g-------------~~rt~~e~~~ll~~ 279 (301)
+.|++++++|+| . +.++|...|+......+..+....-+..+.. .++ ...+.+++.+++++
T Consensus 128 ~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 128 KVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred HHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999 3 4456654443321110100000000000110 111 23588999999999
Q ss_pred CCCceeEEEecC-CceeEEEEeC
Q 043533 280 AVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 280 aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
+| +.++.+... |--.+..++|
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEee
Confidence 84 767777764 4456666654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=105.26 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=86.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--cchhHHH---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIP--PANAFLF--------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~--------- 213 (301)
.....+|||||||+|.++..+++... +++++|. +.+++. .++.....+... +.+ .||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977644 9999999 777766 223333322222 233 2898887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc--cCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--ATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+|+++++.|+| ||.+++.+...... ... ....+.+... .....++.++|+++++++||++++
T Consensus 94 ~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKP---GGYLVISDPNRDDP-SPR------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEE---EEEEEEEEEBTTSH-HHH------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCC---CCEEEEEEcCCcch-hhh------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999 88888888755331 111 1111111111 223567999999999999999886
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=106.26 Aligned_cols=129 Identities=21% Similarity=0.217 Sum_probs=95.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
.+.++ +.++ .....+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++..+|+.+ +++
T Consensus 19 ~~~l~-~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (197)
T PRK11207 19 HSEVL-EAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD 93 (197)
T ss_pred hHHHH-Hhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC
Confidence 34566 6666 555689999999999999999986 568999999 888887764 2458888899876 555
Q ss_pred c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 207 P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 207 ~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
. ||+|++ .++++++++|+| ||.+++++...+++...+ ... ....+.+|
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~e 155 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------VGF-------PFAFKEGE 155 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------CCC-------CCccCHHH
Confidence 5 898764 889999999999 899877776544322100 000 11257889
Q ss_pred HHHHHHhCCCceeEEE
Q 043533 273 WAKLFFDAVFSHYKIT 288 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~ 288 (301)
+.++++ ||+.+...
T Consensus 156 l~~~~~--~~~~~~~~ 169 (197)
T PRK11207 156 LRRYYE--GWEMVKYN 169 (197)
T ss_pred HHHHhC--CCeEEEee
Confidence 999997 89988763
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=107.34 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=94.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC-----CCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVA----NLPEADNLKYIAGDMLRF-----IPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~----~a~~~~ri~~~~~D~~~~-----~p~-~D~i~~-- 213 (301)
+.+..+|||+|||+|.++..+++..+..+++++|+ +++++ .+++..+|.++.+|...+ +++ +|+|+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 56778999999999999999999988778999999 76665 444457899999998653 233 888875
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+|+++++.|+| ||+++|.=...+-+...+ . .+..++..++++++||+.++
T Consensus 150 ~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~-----~--------------~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 150 AQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD-----P--------------KEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred CChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC-----H--------------HHHHHHHHHHHHHcCCeEEE
Confidence 358999999999 999998511111000000 0 01124446999999999999
Q ss_pred EEecCC---ceeEEEEe
Q 043533 287 ITPIFG---MKSLIEVY 300 (301)
Q Consensus 287 ~~~~~~---~~~~i~a~ 300 (301)
+..... .+..+.++
T Consensus 208 ~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 208 VVDLEPYHKDHAAVVAR 224 (226)
T ss_pred EEcCCCCcCCeEEEEEE
Confidence 988743 36666554
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-12 Score=110.65 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=113.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.+. +.++.+|||||||-|.+++.++++| +.+++++++ ++..+.+++ .++|++...|+.+..+
T Consensus 61 ~~~~~-~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 61 LDLIL-EKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHH-HhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 34566 7777 8999999999999999999999999 999999999 777666654 4689999999865333
Q ss_pred cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 207 PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 207 ~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
.||-|++ ..++++++.|+| ||+++++....+...... ...+..-. ...+|..++..++
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i~~y--iFPgG~lPs~~~i 207 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFIDKY--IFPGGELPSISEI 207 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHHHHh--CCCCCcCCCHHHH
Confidence 3898887 899999999999 899999888777654311 01111111 2368888999999
Q ss_pred HHHHHhCCCceeEEEecC
Q 043533 274 AKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~~~ 291 (301)
.+..+++||.+..+....
T Consensus 208 ~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 208 LELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHhcCcEEehHhhhc
Confidence 999999999999877654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=108.11 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=95.5
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--ch
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--AN 209 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D 209 (301)
+..++ +.++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ...+.++.+|+.+ ++++ ||
T Consensus 31 a~~l~-~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 31 ADALL-AMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHH-HhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 34455 5555 345679999999999999988764 578999999 999988876 3446788999977 6664 89
Q ss_pred hHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHH
Q 043533 210 AFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 278 (301)
Q Consensus 210 ~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~ 278 (301)
+|++ .+|++++++|+| ||.+++.......-. . +.......+. ........+.+++.+++.
T Consensus 106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~-e--l~~~~~~~~~---~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 106 LAWSNLAVQWCGNLSTALRELYRVVRP---GGVVAFTTLVQGSLP-E--LHQAWQAVDE---RPHANRFLPPDAIEQALN 176 (251)
T ss_pred EEEECchhhhcCCHHHHHHHHHHHcCC---CeEEEEEeCCCCchH-H--HHHHHHHhcc---CCccccCCCHHHHHHHHH
Confidence 8876 889999999999 888877654322111 1 1110011111 012234568999999999
Q ss_pred hCCCcee
Q 043533 279 DAVFSHY 285 (301)
Q Consensus 279 ~aGf~~~ 285 (301)
..|+...
T Consensus 177 ~~~~~~~ 183 (251)
T PRK10258 177 GWRYQHH 183 (251)
T ss_pred hCCceee
Confidence 9988743
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=104.71 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=104.0
Q ss_pred hHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043533 110 WEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANL 188 (301)
Q Consensus 110 ~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a 188 (301)
|+-....+.....+...|..........++ +.+.....+..+|||||||+|.++..+++. +.+++++|+ ++++..|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLL-DWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 444444444555555555433333344455 444311345789999999999999999886 458999999 8898877
Q ss_pred CC-------CCCeEEEeCCCCCCCCcchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh
Q 043533 189 PE-------ADNLKYIAGDMLRFIPPANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL 248 (301)
Q Consensus 189 ~~-------~~ri~~~~~D~~~~~p~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~ 248 (301)
++ .++++|..+|+.+....||+|++ .+++++++.+++ +.++.+. +......
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~~~~~-- 164 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKTAWLA-- 164 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCchHHH--
Confidence 64 25899999998763244886654 678888887776 4333321 1111100
Q ss_pred hhhhhhhchhhccc---cCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 249 TETKFLFDIVMSVN---ATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 249 ~~~~~~~d~~~~~~---~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
. ...+.-.+... ..-..++.+++.++++++||+++......
T Consensus 165 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 165 -F-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred -H-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0 00111110000 11234589999999999999999887663
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=105.49 Aligned_cols=125 Identities=17% Similarity=0.253 Sum_probs=93.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCc--chhHHH---------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FIPP--ANAFLF--------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~p~--~D~i~~--------- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|+ +.++..++. .++++++.+|+.+ +++. ||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999999 777766654 4589999999977 5553 899887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++|++++++|+| ||.+++.+....... .....+. .......+.++|.+++.++ |+.+.+.
T Consensus 114 ~~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LSQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 899999999999 898887754222110 1011111 0223456888999999988 8876554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-12 Score=92.40 Aligned_cols=77 Identities=17% Similarity=0.368 Sum_probs=66.2
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--chhHHH-----------HH
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--ANAFLF-----------KI 215 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D~i~~-----------~i 215 (301)
||||||+|..+..++++ +..+++++|. +++++.+++ ..++++..+|+.+ |+|+ +|+|++ ++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 79999999999999999 8899999999 777777765 5677899999988 7775 998887 99
Q ss_pred HHHHHHhcccCCCCcEEEE
Q 043533 216 LKKRREAIASNGERGKVII 234 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i 234 (301)
+++++++||| ||+++|
T Consensus 80 l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHcCc---CeEEeC
Confidence 9999999999 888765
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=97.26 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=93.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-cchhHHH-------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP-PANAFLF------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p-~~D~i~~------- 213 (301)
....+|||+|||+|.++..+++..+ +++++|+ |++++.+++ .-+++++.+|+++..+ .||+|++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 4457899999999999999999886 8999999 888887764 3468889999876333 3776653
Q ss_pred -------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccC
Q 043533 214 -------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKER 268 (301)
Q Consensus 214 -------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~r 268 (301)
.+|+++.+.|+| ||++++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 469999999999 898888763111
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 269 TESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 269 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
...++.++++++||....+.....++--++++
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 24667889999999999988887666555554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-11 Score=100.36 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~ 207 (301)
...++ +.++ .....+|||+|||+|.++..++++ +.+++++|+ +.+++.+++ .-++.+..+|+.. +++.
T Consensus 19 ~~~l~-~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 93 (195)
T TIGR00477 19 HSAVR-EAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNE 93 (195)
T ss_pred hHHHH-HHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccC
Confidence 34566 6665 455689999999999999999986 578999999 888887653 2246777788765 4444
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
||+|++ .++++++++|+| ||++++++....+.... . ... ....+++|+
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~------~--~~~-------~~~~~~~el 155 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPC------H--MPF-------SFTFKEDEL 155 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCC------C--CCc-------CccCCHHHH
Confidence 898754 799999999999 89988876543322110 0 000 113578999
Q ss_pred HHHHHhCCCceeEEE
Q 043533 274 AKLFFDAVFSHYKIT 288 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~ 288 (301)
.++++ +|+++...
T Consensus 156 ~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 156 RQYYA--DWELLKYN 168 (195)
T ss_pred HHHhC--CCeEEEee
Confidence 99986 58887766
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=102.06 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=73.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
+...+|||||||+|..+..++++.|+.+++++|. +++++.+++ .++++++.+|+.+ +... ||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~ 123 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVAS 123 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccC
Confidence 3468999999999999999999999999999999 888877764 3459999999876 3333 999988
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++++.|+| ||++++++
T Consensus 124 ~~~~l~~~~~~Lkp---GG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLLKP---GGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhcCC---CeEEEEEe
Confidence 899999999999 89888774
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-11 Score=99.62 Aligned_cols=93 Identities=17% Similarity=0.356 Sum_probs=77.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-c
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-A 208 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~ 208 (301)
++ +.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++. -+.++++..|.+++.+ . |
T Consensus 23 L~-~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~f 99 (170)
T PF05175_consen 23 LL-DNLP--KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKF 99 (170)
T ss_dssp HH-HHHH--HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCE
T ss_pred HH-HHHh--hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccce
Confidence 44 5555 33678999999999999999999999999999999 888887764 2339999999998766 3 9
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|+|++ ++++++.+.|+| ||.++++-
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 99887 889999999999 89887644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=100.47 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=88.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC-c-chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIP-P-ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p-~-~D~i~~--- 213 (301)
.+..+|||||||+|.++..|++. .|+.+++++|+ +++++.+++ ..++++..+|... +.+ . +|+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 56789999999 999988875 3456666655433 333 3 898887
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccC-----CccCCHHHHHHHHH
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-----GKERTESEWAKLFF 278 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----g~~rt~~e~~~ll~ 278 (301)
++|++++++++ |.+++.+...+....-- +........-..+...+ .+-+|.+|+.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 58888888865 45666665444211100 00000000000011111 13579999999999
Q ss_pred hCCCceeEEEec
Q 043533 279 DAVFSHYKITPI 290 (301)
Q Consensus 279 ~aGf~~~~~~~~ 290 (301)
+ ||++...++.
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 9 9998777655
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-11 Score=91.48 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=73.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~ 207 (301)
++ +.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+.. ..+.
T Consensus 11 ~~-~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 11 TL-SKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HH-HHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 44 5554 55567999999999999999999999999999999 777777653 3578999898764 2233
Q ss_pred -chhHHH--------HHHHHHHHhcccCCCCcEEEEE
Q 043533 208 -ANAFLF--------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 208 -~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+|+|++ ++++++++.|+| ||.+++.
T Consensus 88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSGGLLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHcCC---CCEEEEE
Confidence 898886 799999999999 8877654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=106.96 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=99.9
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCCcchhHH
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLRFIPPANAFL 212 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~~~p~~D~i~ 212 (301)
.++ +.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++..+|+.+.-..||+|+
T Consensus 158 ~l~-~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 158 LIC-RKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHH-HHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 345 5554 5677899999999999999999876 679999999 888887764 3357888888754212388775
Q ss_pred H-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh
Q 043533 213 F-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD 279 (301)
Q Consensus 213 ~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~ 279 (301)
+ .++++++++|+| ||.+++.+...+...... ..+.+- ....+|..++.+++.++++
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~--yifp~g~lps~~~i~~~~~- 302 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINK--YIFPNGCLPSVRQIAQASE- 302 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCcee--eecCCCcCCCHHHHHHHHH-
Confidence 3 789999999999 898888776444322110 111111 1235677788999888866
Q ss_pred CCCceeEEEecC
Q 043533 280 AVFSHYKITPIF 291 (301)
Q Consensus 280 aGf~~~~~~~~~ 291 (301)
.||.+..+....
T Consensus 303 ~~~~v~d~~~~~ 314 (383)
T PRK11705 303 GLFVMEDWHNFG 314 (383)
T ss_pred CCcEEEEEecCh
Confidence 589988876653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-11 Score=109.49 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=77.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLRFI 205 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~~~ 205 (301)
..++ +.++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|.++.+
T Consensus 218 rllL-~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 218 RFFM-QHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred HHHH-HhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 3455 6666 33346999999999999999999999999999999 778877763 137899999998754
Q ss_pred C--cchhHHH----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 206 P--PANAFLF----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 206 p--~~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+ .||+|++ ++++.++++|+| ||.++++-
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 3 3888887 789999999999 89988884
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-11 Score=99.53 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-cchhHHH-------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP-PANAFLF------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p-~~D~i~~------- 213 (301)
..+|||||||+|.++..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 67999999999999999999999999999999 777765543 3579999999976 333 3998887
Q ss_pred HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++.+++.|+| ||.+++.
T Consensus 123 ~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 123 VLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred HHHHHHHHhcCC---CCEEEEE
Confidence 788999999999 8988765
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=100.32 Aligned_cols=86 Identities=15% Similarity=0.282 Sum_probs=70.1
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC--------------------------
Q 043533 148 EGLGSLVDVGGGNVS----FSRIISEAFP-----GIKCTVLDL-PHAVANLPEA-------------------------- 191 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~----~~~~l~~~~P-----~~~~~~~Dl-p~~~~~a~~~-------------------------- 191 (301)
.+..+|+|+|||+|. +++.+++..| +.+++++|+ +.+++.|+++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 6777777665 578999999 8999888751
Q ss_pred -------CCeEEEeCCCCC-CCCc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 192 -------DNLKYIAGDMLR-FIPP--ANAFLF-------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 192 -------~ri~~~~~D~~~-~~p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+|..+|+.+ +.|. +|+|++ +++++++++|+| ||.+++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 379999999988 4433 998887 799999999999 88888754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=109.93 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=98.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC---CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR---FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~---~~p 206 (301)
...++ +.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. .++++++.+|+.+ ++|
T Consensus 26 ~~~il-~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEIL-SLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHH-hhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 35566 6665 4456799999999999999999885 47999999 888876643 4679999999863 455
Q ss_pred c--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHH
Q 043533 207 P--ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 271 (301)
Q Consensus 207 ~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~ 271 (301)
. ||+|++ .+|+++++.|+| ||.+++.|......... .... .....|+..
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~------~~~~-------~~~~~~~~~ 164 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDS------KRKN-------NPTHYREPR 164 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCcc------cccC-------CCCeecChH
Confidence 3 898887 789999999999 89999988765433211 0100 112235688
Q ss_pred HHHHHHHhCCCceeE
Q 043533 272 EWAKLFFDAVFSHYK 286 (301)
Q Consensus 272 e~~~ll~~aGf~~~~ 286 (301)
+|.+++.++||....
T Consensus 165 ~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 165 FYTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHHheeccCC
Confidence 999999999998774
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-10 Score=100.55 Aligned_cols=110 Identities=19% Similarity=0.319 Sum_probs=86.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .++++++.+|++++++. +|+|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 888887764 34799999999876543 887753
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 262 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 262 (301)
.+++++.+.|+| ||.+++. . .
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~-~-----~------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE-I-----G------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE-E-----C-------------------
Confidence 457888889998 7766551 1 0
Q ss_pred cCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 263 ATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
....+++.++|+++||+.+++..-
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 123467889999999998887664
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-10 Score=101.20 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=91.8
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~- 207 (301)
+.++ ..++ .....+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++..+|+.. +++.
T Consensus 110 ~~~~-~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~ 184 (287)
T PRK12335 110 SEVL-EAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEE 184 (287)
T ss_pred HHHH-HHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCC
Confidence 3355 5554 344569999999999999999986 579999999 788876653 3368888889876 4554
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ .++++++++|+| ||.++++.....+....+ ... ....+..|++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~p~-------~~~~~~~el~ 246 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------MPF-------SFTFKEGELK 246 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------CCC-------CcccCHHHHH
Confidence 898754 789999999999 898887665433321110 000 1135788999
Q ss_pred HHHHhCCCceeEEE
Q 043533 275 KLFFDAVFSHYKIT 288 (301)
Q Consensus 275 ~ll~~aGf~~~~~~ 288 (301)
++++. |++++..
T Consensus 247 ~~~~~--~~i~~~~ 258 (287)
T PRK12335 247 DYYQD--WEIVKYN 258 (287)
T ss_pred HHhCC--CEEEEEe
Confidence 99965 8888764
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-10 Score=93.99 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=79.1
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCcchh
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPPANA 210 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~~D~ 210 (301)
+.+. ..+...++|||||||..+++++..+|..+++.+|. +++++..++ -++++++.||.-+ +.|.+|.
T Consensus 28 s~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 28 SKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 5555 67788999999999999999999999999999998 777776654 6899999999866 3445999
Q ss_pred HHH-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 211 FLF-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|++ .+|+.+.+.|+| ||++++.-.
T Consensus 106 iFIGGg~~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 106 IFIGGGGNIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred EEECCCCCHHHHHHHHHHHcCc---CCeEEEEee
Confidence 999 999999999999 898887654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=90.95 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=106.8
Q ss_pred ccCCCe-EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEeCCCCC---CC-------Cc
Q 043533 147 FEGLGS-LVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLK-YIAGDMLR---FI-------PP 207 (301)
Q Consensus 147 ~~~~~~-vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~-~~~~D~~~---~~-------p~ 207 (301)
++...+ ||+||+|||..+..+++++|+++..--|. +.....+.. .+++. -+.-|+.+ +. +.
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 455554 99999999999999999999998877787 322222221 12211 11234433 12 22
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCccCCHHH
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESE 272 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~rt~~e 272 (301)
+|+|++ .+++.+.++|++ ||.|++.-++.-+....+ .....||..+-.. .....|..++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 788886 899999999999 999999988776543211 2345677665543 3456899999
Q ss_pred HHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 273 WAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
+.++.+++|++..++..+|.++.+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998887777765
|
The function of this family is unknown. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=96.53 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=84.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCcchhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPPANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~------ 213 (301)
....+|||||||+|.+++.+++..+. +++++|+ |.+++.+++ .+++.+..+|. .||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcHHH
Confidence 45689999999999999988776543 7999999 888887765 13444444432 3677654
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
.+++++.+.|+| ||.+++..... ...+++.+.+++.||+..++....
T Consensus 192 ~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 192 LLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred HHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEEEEEeC
Confidence 788999999999 89888753211 024567889999999999988877
Q ss_pred CceeEEEE
Q 043533 292 GMKSLIEV 299 (301)
Q Consensus 292 ~~~~~i~a 299 (301)
.+..++--
T Consensus 241 ~W~~~~~~ 248 (250)
T PRK00517 241 EWVALVGK 248 (250)
T ss_pred CEEEEEEE
Confidence 76665543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-11 Score=92.72 Aligned_cols=76 Identities=21% Similarity=0.420 Sum_probs=53.1
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEeCCCCCC-CC-cchhHHH--------
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------AD---NLKYIAGDMLRF-IP-PANAFLF-------- 213 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~---ri~~~~~D~~~~-~p-~~D~i~~-------- 213 (301)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|.++. .+ .||+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899988876 12 345555555543 33 3999887
Q ss_pred ---HHHHHHHHhcccCCCCcEE
Q 043533 214 ---KILKKRREAIASNGERGKV 232 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l 232 (301)
.+|+++++.|+| ||.|
T Consensus 81 ~~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TS---S-EE
T ss_pred hHHHHHHHHHHHcCC---CCCC
Confidence 999999999999 8865
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=95.21 Aligned_cols=132 Identities=9% Similarity=-0.018 Sum_probs=92.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CcchhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PH----AVANLPEADNLKYIAGDMLRFI------PPANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~----~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~- 213 (301)
+....+|||+|||+|.++..+++.. |.-+++++|+ +. +++.++...+|.++.+|+..+. +.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5667899999999999999999986 4568999998 43 5666655678999999986542 22898887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.++.++++.|+| ||.++|.-....-+.. .+.. ++=.+|. ++|+++||+.+
T Consensus 210 va~pdq~~il~~na~r~LKp---GG~~vI~ika~~id~g----------~~pe--------~~f~~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 210 VAQPDQARIVALNAQYFLKN---GGHFIISIKANCIDST----------AKPE--------VVFASEV-QKLKKEGLKPK 267 (293)
T ss_pred CCCcchHHHHHHHHHHhccC---CCEEEEEEeccccccC----------CCHH--------HHHHHHH-HHHHHcCCceE
Confidence 455689999999 8988883111110000 0000 0001344 88999999999
Q ss_pred EEEecCC---ceeEEEEe
Q 043533 286 KITPIFG---MKSLIEVY 300 (301)
Q Consensus 286 ~~~~~~~---~~~~i~a~ 300 (301)
+...+.. .+.+|.++
T Consensus 268 e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 268 EQLTLEPFERDHAVVIGV 285 (293)
T ss_pred EEEecCCccCCcEEEEEE
Confidence 8888742 46666653
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=99.39 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=65.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CCc-c---h--h
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--IPP-A---N--A 210 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--~p~-~---D--~ 210 (301)
+...+|||+|||+|..+..|+++.+ ..+++++|+ +++++.+.+ .-+|.++.+|+.+. ++. + + +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3457899999999999999999987 689999999 788776653 23467789999863 333 3 2 2
Q ss_pred HHH-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 211 FLF-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 211 i~~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
+++ .+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 221 899999999999 887765
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-10 Score=96.02 Aligned_cols=135 Identities=16% Similarity=0.071 Sum_probs=89.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CCc-chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-F--IPP-ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~--~p~-~D~i~~---- 213 (301)
....+|||||||+|.++..+++. ..+++++|+ +.+++.++. ..++++..+|+.+ + .+. ||+|++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999999886 468999999 677766653 3467888888754 2 223 999865
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc---cCCccCCHHHHHHHHHhCCCc
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~g~~rt~~e~~~ll~~aGf~ 283 (301)
.+|+++.+.|+| ||.+++.... ..............+-...... ......+.++|.++++++||+
T Consensus 125 ~~~~~~~~~l~~~~~~L~~---gG~l~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKP---GGLVFFSTLN--RNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCHHHHHHHHHHHcCC---CcEEEEEecC--CChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 789999999999 8988766432 1111100000000000001101 113356889999999999999
Q ss_pred eeEEEe
Q 043533 284 HYKITP 289 (301)
Q Consensus 284 ~~~~~~ 289 (301)
++....
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 997754
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=96.21 Aligned_cols=122 Identities=16% Similarity=0.297 Sum_probs=90.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~D~i~~---- 213 (301)
..+..+|||+|||+|..+..+++..|..+++++|+ +.+++.+++ ..++.++.+|++++.+ . ||+|++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 777776664 3689999999987654 3 787653
Q ss_pred ---------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhc
Q 043533 214 ---------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS 260 (301)
Q Consensus 214 ---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 260 (301)
++++++.+.|+| ||.+++ +. +
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g----------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----G----------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----C-----------------
Confidence 577788899999 776665 22 0
Q ss_pred cccCCccCCHHHHHHHHHhCCCceeEEEe-cCCceeEEEEe
Q 043533 261 VNATGKERTESEWAKLFFDAVFSHYKITP-IFGMKSLIEVY 300 (301)
Q Consensus 261 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~a~ 300 (301)
....+++++++++.||+.+++.. ..+...++.++
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01134588899999999777643 34544444444
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-10 Score=102.81 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=72.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chhHHH----HHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPG---IKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANAFLF----KIL 216 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~---~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~i~~----~iL 216 (301)
...+|||||||+|.++..+++..|. .+++++|+ +.+++.|++ .+++++..+|..+ |++. +|+|+. ..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~ 164 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKA 164 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCCCH
Confidence 4578999999999999999998875 37899999 889988865 5789999999987 7764 999887 668
Q ss_pred HHHHHhcccCCCCcEEEEEe
Q 043533 217 KKRREAIASNGERGKVIIID 236 (301)
Q Consensus 217 ~~~~~aL~p~~~gg~l~i~e 236 (301)
++++++|+| ||+++++.
T Consensus 165 ~e~~rvLkp---gG~li~~~ 181 (272)
T PRK11088 165 EELARVVKP---GGIVITVT 181 (272)
T ss_pred HHHHhhccC---CCEEEEEe
Confidence 999999999 89998865
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-10 Score=103.16 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=75.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc-chh
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP-ANA 210 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~-~D~ 210 (301)
++ +.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++. .-..+++.+|.+...+. ||+
T Consensus 188 Ll-~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 188 LL-STLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HH-Hhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 45 5555 23346899999999999999999999999999999 788887764 22356778888775555 898
Q ss_pred HHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 211 FLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|++ ++++++.+.|+| ||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 885 889999999999 999988764
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-10 Score=94.98 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=72.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCc--chhHHH---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIPP--ANAFLF--------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p~--~D~i~~--------- 213 (301)
.+...+|||||||+|.++..+++..|+.+++++|+ +++++.|++ .+++++..+|+.++++. ||+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45567999999999999999999989999999999 899999876 46788999999887654 898876
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
++++++++++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~-----~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS-----NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc-----CcEEEEEEeeCCC
Confidence 5666666654 3678888875443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-10 Score=98.35 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=94.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCCCCcchhHHH---
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------AD----NLKYIAGDMLRFIPPANAFLF--- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~----ri~~~~~D~~~~~p~~D~i~~--- 213 (301)
..+|||||||+|.++..|++.. .+++++|. +.+++.|++ .. |+++...|.....+.||+|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3779999999999999999985 78999999 888888874 22 577777777554555998887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-----cCCccCCHHHHHHHHHhC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-----ATGKERTESEWAKLFFDA 280 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~g~~rt~~e~~~ll~~a 280 (301)
.+++.+.+.|+| ||+++|......-...... ..+.+...... +..+..+.+|...++.++
T Consensus 168 leHV~dp~~~l~~l~~~lkP---~G~lfittinrt~lS~~~~----i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKP---NGRLFITTINRTILSFAGT----IFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCC---CCceEeeehhhhHHHhhcc----ccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 888999999999 8999998763332221110 01111111111 223567899999999999
Q ss_pred CCceeEEEe
Q 043533 281 VFSHYKITP 289 (301)
Q Consensus 281 Gf~~~~~~~ 289 (301)
|+++..+.-
T Consensus 241 ~~~v~~v~G 249 (282)
T KOG1270|consen 241 GAQVNDVVG 249 (282)
T ss_pred Ccchhhhhc
Confidence 999887654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=95.20 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=89.2
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hH------HHhcCCC-CCCeEEEeCCCCCCCC--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH------AVANLPE-ADNLKYIAGDMLRFIP-- 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~------~~~~a~~-~~ri~~~~~D~~~~~p-- 206 (301)
.+. ..++ .+. +++|||||||.|.++..++++.|. .++++|- +. .+.+... ..++.+.+--+ +.+|
T Consensus 106 rl~-p~l~-~L~-gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~~ 180 (315)
T PF08003_consen 106 RLL-PHLP-DLK-GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPNL 180 (315)
T ss_pred HHH-hhhC-CcC-CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhcccc
Confidence 344 4443 143 589999999999999999999765 6999996 22 2232222 23344443222 3333
Q ss_pred c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 207 P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 207 ~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
. ||+|++ ..|+++++.|+| ||.+++=..+++.+...--.+. .++-.+. ..--.+|...+.
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~-~rYa~m~----nv~FiPs~~~L~ 252 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPE-DRYAKMR----NVWFIPSVAALK 252 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccC-CcccCCC----ceEEeCCHHHHH
Confidence 3 999987 999999999999 7766555555554432100000 0101010 001246899999
Q ss_pred HHHHhCCCceeEEEec
Q 043533 275 KLFFDAVFSHYKITPI 290 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~ 290 (301)
.|++++||+.+++..+
T Consensus 253 ~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHcCCceEEEecC
Confidence 9999999999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-11 Score=89.64 Aligned_cols=75 Identities=15% Similarity=0.371 Sum_probs=61.8
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH-------
Q 043533 153 LVDVGGGNVSFSRIISEAF---PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF------- 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~---P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~------- 213 (301)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 6689999999 899888875 3589999999987 5433 888776
Q ss_pred -------HHHHHHHHhcccCCCCc
Q 043533 214 -------KILKKRREAIASNGERG 230 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg 230 (301)
++|+++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 999999999999 66
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-10 Score=98.22 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=79.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~- 207 (301)
+-++ +.++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ...++.++. .++..+...|.+++.+.
T Consensus 148 ~lLl-~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 148 RLLL-ETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHH-HhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 4466 7777 44455999999999999999999999999999999 677777775 23335667788887766
Q ss_pred chhHHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 ANAFLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 ~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
||+|++ ++++++.++|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999998 899999999999 999988876
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-10 Score=99.67 Aligned_cols=125 Identities=11% Similarity=0.151 Sum_probs=86.3
Q ss_pred cCCCeEEEecCCccHH-HHH-HHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC---CcchhHHH
Q 043533 148 EGLGSLVDVGGGNVSF-SRI-ISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI---PPANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~-~~~-l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~---p~~D~i~~ 213 (301)
.++++|+|||||.|-+ ++. +++.+|+.+++++|. +++++.|++ .+|++|..+|..+.. ..||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999997744 333 335689999999999 888887764 478999999998732 23999887
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCC
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAV 281 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aG 281 (301)
++|++++++|+| ||.+++ -.. .+. ..++.- .-..++.+ |
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvl-r~~---~G~-------r~~LYp---------~v~~~~~~------g 252 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAP---GALLML-RSA---HGA-------RAFLYP---------VVDPCDLR------G 252 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCC---CcEEEE-ecc---cch-------HhhcCC---------CCChhhCC------C
Confidence 899999999999 775554 331 111 111111 11222222 9
Q ss_pred CceeEEEec-C-CceeEEEEeC
Q 043533 282 FSHYKITPI-F-GMKSLIEVYP 301 (301)
Q Consensus 282 f~~~~~~~~-~-~~~~~i~a~~ 301 (301)
|+...+.+- + ..+++|.+|+
T Consensus 253 f~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 253 FEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred eEEEEEECCCCCceeeEEEEEe
Confidence 998877654 3 3689998875
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-10 Score=100.82 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=72.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCCc-chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR---FIPP-ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~---~~p~-~D~i~~-- 213 (301)
+.+++|||||||+|.++..+++.+|+.+++++|+ |++++.|++ .+|++++.+|+.+ ..+. ||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 999988764 3789999999854 2344 888875
Q ss_pred -------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 889999999999 8877764
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=93.38 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=84.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCcchhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPPANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~------ 213 (301)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .+++.+..+|+......||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4467999999999999999998754 5999999 888887764 25899999995323233887754
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh-c-cccCCccCCHHHHHHHHHhCCCce
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-S-VNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
.+++++.+.+++ +.++.+. +...... .......... . ........+..+|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHHHH---HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 667777765543 4443321 1111100 0000000000 0 001223468899999999999999
Q ss_pred eEEEecC
Q 043533 285 YKITPIF 291 (301)
Q Consensus 285 ~~~~~~~ 291 (301)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9998764
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-10 Score=94.60 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=74.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
..++ +.++ .....+|||||||+|..+..+++..+ ..+++++|. +++++.+++ .++++++.+|+.+.++
T Consensus 62 ~~~~-~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 62 AMMC-ELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHH-HhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 3345 5554 55668999999999999999998764 568999999 888877664 2469999999987443
Q ss_pred ---cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 ---PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 ---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.||+|++ .+.+++.+.|+| ||++++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIPSALVRQLKD---GGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhhHHHHHhcCc---CcEEEEE
Confidence 2999887 777899999999 8988764
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-10 Score=96.73 Aligned_cols=85 Identities=16% Similarity=0.281 Sum_probs=71.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC-CC-C--CCc--chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDM-LR-F--IPP--ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~-~~-~--~p~--~D~i~~-- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|. +++++.+++ .++++++.+|+ .. + ++. +|+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887764 36799999998 33 3 433 777654
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 479999999999 89888764
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=92.90 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=122.2
Q ss_pred cchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCc-hHHHHHHHHhhccc-----------c-cchHHHHHhhhhh--
Q 043533 81 FFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNP-AINQRFNEAMASDS-----------E-IMTSFVVKSECKQ-- 145 (301)
Q Consensus 81 ~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~-~~~~~f~~am~~~~-----------~-~~~~~~~~~~~~~-- 145 (301)
..+.....+.+.++-|-.++|+. |.++ +|.++|. .-.-.+.+.|...- + .....+++..+..
T Consensus 55 ~~m~~~g~lS~Gi~lG~~tGFDS--GstL-DYVYrN~p~G~~~~GrliDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~ 131 (311)
T PF12147_consen 55 ASMRTGGRLSEGIRLGLETGFDS--GSTL-DYVYRNQPQGKGPLGRLIDRNYLNAIGWRGIRQRKVHLEELIRQAIARLR 131 (311)
T ss_pred HHHHhccccccceeechhcCCCC--cchH-hHHhcCCCCCcchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777766566653 4443 6666653 22223333333210 0 0112222122221
Q ss_pred cccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--C----Ccch
Q 043533 146 IFEGLGSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--I----PPAN 209 (301)
Q Consensus 146 ~~~~~~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--~----p~~D 209 (301)
.-..+.+||||.||+|.+....+..+|. .++.+.|. |.-++..++ .+-++|..+|+|+. + |.++
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 1235679999999999999999999998 78999999 666665553 34459999999973 2 2345
Q ss_pred hHHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCC-----ccCCH
Q 043533 210 AFLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG-----KERTE 270 (301)
Q Consensus 210 ~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g-----~~rt~ 270 (301)
++++ +.|+-+++++.| ||.++..-.-..+... + ....+..+.+| +-||+
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle------~---IAr~LtsHr~g~~WvMRrRsq 279 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE------M---IARVLTSHRDGKAWVMRRRSQ 279 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH------H---HHHHHhcccCCCceEEEecCH
Confidence 5544 678889999999 7866654432221111 0 01111111122 35899
Q ss_pred HHHHHHHHhCCCceeEE-EecCCceeEEEEe
Q 043533 271 SEWAKLFFDAVFSHYKI-TPIFGMKSLIEVY 300 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~-~~~~~~~~~i~a~ 300 (301)
.|+.+|+++|||+.+.. +.-+|-+.+-.|+
T Consensus 280 ~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 280 AEMDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHHHHHcCCchhhheeccCCceEEEeec
Confidence 99999999999997754 3445656666555
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.7e-10 Score=95.14 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=76.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-C
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI-P 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~-p 206 (301)
..++ +.++ +....+|||||||+|.++..+++.. ++.+++++|. +++++.+++ .++++++.+|..+.. +
T Consensus 66 ~~~~-~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 66 AIMC-ELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHH-HHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 4455 5555 6778899999999999999999875 4579999999 888887764 357999999998733 2
Q ss_pred --cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 --PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 --~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.||+|++ .+.+.+.+.|+| ||++++.
T Consensus 143 ~~~fD~I~~~~~~~~~~~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIPKPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCcccchHHHHHhhCC---CcEEEEE
Confidence 2999887 778888999999 8988775
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=93.76 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=89.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC-CC--Cc-chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----AD-NLKYIAGDMLR-FI--PP-ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~-ri~~~~~D~~~-~~--p~-~D~i~~---- 213 (301)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.++. .. ++++..+|+.+ +. +. +|+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 367999999999999999988754 5999999 777776654 22 68888888765 32 23 898865
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc----c---cCCccCCHHHHHHHHHh
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV----N---ATGKERTESEWAKLFFD 279 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~----~---~~g~~rt~~e~~~ll~~ 279 (301)
.+|+++++.|+| ||.+++.....+. .. . ........+.. . ......+..++.+++++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~---gG~l~i~~~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKP---GGILFFSTINRTP--KS--Y--LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred HhCCCHHHHHHHHHHhcCC---CcEEEEEecCCCc--hH--H--HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH
Confidence 899999999999 8988776542111 00 0 00111111110 0 11234578999999999
Q ss_pred CCCceeEEEec
Q 043533 280 AVFSHYKITPI 290 (301)
Q Consensus 280 aGf~~~~~~~~ 290 (301)
+||+++++...
T Consensus 194 ~G~~i~~~~~~ 204 (224)
T TIGR01983 194 AGLRVKDVKGL 204 (224)
T ss_pred cCCeeeeeeeE
Confidence 99999987643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-10 Score=99.88 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=55.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ .++|+++.+|++++++. +|+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEE
Confidence 457899999999999999999999999999999 888887774 36899999999876553 787764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-09 Score=97.59 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=56.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC--c-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF-IP--P-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~-~p--~-~D~i~~ 213 (301)
++...+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|++++ .| . +|+|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence 34456999999999999999999999999999999 899988775 45899999999763 33 2 888887
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-10 Score=95.05 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=76.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP- 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p- 206 (301)
..++ +.++ .....+|||||||+|.++..+++..+ +.+++++|. +++++.|++ .++++++.+|..+..+
T Consensus 67 ~~~~-~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 67 AMMT-ELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHH-HHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3455 5555 67778999999999999999999864 578999998 888887764 3679999999976332
Q ss_pred --cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 --PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 --~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.||+|++ .+.+.+.+.|+| ||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIPEALIDQLKE---GGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccccHHHHHhcCc---CcEEEEE
Confidence 3999887 788899999999 8988764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-10 Score=95.33 Aligned_cols=85 Identities=15% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C---CCc--chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F---IPP--ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~---~p~--~D~i~~-- 213 (301)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+.+ -.+|+++.+|+.+ + ++. +|.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999999 778777653 3589999999864 2 332 676664
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++++++++|+| ||.+++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 489999999999 89887654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.7e-09 Score=87.07 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=84.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCCCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADN-LKYIAGDMLRFIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~r-i~~~~~D~~~~~p~--~D~i~~--- 213 (301)
.+..+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.++.+|+.+++++ +|+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 678999999 888877753 223 88999998875543 777642
Q ss_pred -----------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccC
Q 043533 214 -----------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 264 (301)
Q Consensus 214 -----------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (301)
.+++++.++|+| ||.++++.. .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~---~----------------------- 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQS---S----------------------- 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEc---c-----------------------
Confidence 579999999999 887776531 0
Q ss_pred CccCCHHHHHHHHHhCCCceeEEEec
Q 043533 265 GKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 265 g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
....+++.++++++||++..+...
T Consensus 151 --~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 151 --LTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred --cCCHHHHHHHHHHCCCeeeeeeec
Confidence 012356788999999998877654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=96.79 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=84.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCc-chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRFIPP-ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~~p~-~D~i~~-- 213 (301)
...+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++|..+|+.. ++. ||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcC
Confidence 3579999999999999999986 578999999 888877764 1357888888753 333 898775
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc----cCCccCCHHHHHHHHH
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN----ATGKERTESEWAKLFF 278 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~----~~g~~rt~~e~~~ll~ 278 (301)
.+++.+.+ +.+ |+++|.. .+...... .....-. .+.. ......+.++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~~~---~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLYYD---ILKRIGE--LFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchHHH---HHHHHHh--hcCCCCcCceeeeCCHHHHHHHHH
Confidence 35555553 344 5555532 12111100 0000000 0100 0112348999999999
Q ss_pred hCCCceeEEEecCC---ceeEEEEe
Q 043533 279 DAVFSHYKITPIFG---MKSLIEVY 300 (301)
Q Consensus 279 ~aGf~~~~~~~~~~---~~~~i~a~ 300 (301)
++||++....-... +-.++||+
T Consensus 289 ~AGf~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 289 KAGWKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred HCCCEEEEEEEeecceeHHhhhhhc
Confidence 99999887654432 23555554
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-10 Score=93.55 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC-
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIP- 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p- 206 (301)
++ +.++ .....+|||+|||+|.++..+++..|+.+++++|+ |++++.+++ .++++++.+|+.+ .+.
T Consensus 32 l~-~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 32 LI-SQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HH-HhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence 44 5555 56678999999999999999999999999999999 888887764 3579999999854 222
Q ss_pred cchhHHH-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 PANAFLF-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ~~D~i~~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+|.+++ .+++++++.|+| ||++++...
T Consensus 109 ~~d~v~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEGGRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCCEEEEECCcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 2455433 899999999999 898887764
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=90.45 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=84.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCc--chhHHH--------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR---FIPP--ANAFLF-------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~---~~p~--~D~i~~-------- 213 (301)
+...+|||||||+|.++..+++. ...+++++|+ +++++.++. .+++++.+|+.+ +++. ||+|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 44579999999999999988866 3668899999 788877753 468888899865 2443 898887
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhhhh-h-hh-----hchhhccccCCccCCHHHHHHHHHhCCC
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEH-ELTET-K-FL-----FDIVMSVNATGKERTESEWAKLFFDAVF 282 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~~~-~-~~-----~d~~~~~~~~g~~rt~~e~~~ll~~aGf 282 (301)
++|+++.+.+++ +++. . +.-.... ..... . .. +.....-....+..+.+++.++++++||
T Consensus 90 d~~~~l~e~~r~~~~------~ii~-~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 90 NPEEILDEMLRVGRH------AIVS-F--PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred CHHHHHHHHHHhCCe------EEEE-c--CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 677777665443 3222 1 1111000 00000 0 00 0000000012346799999999999999
Q ss_pred ceeEEEecC
Q 043533 283 SHYKITPIF 291 (301)
Q Consensus 283 ~~~~~~~~~ 291 (301)
++++....+
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 999877663
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-10 Score=96.35 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=91.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCC--eEEEeCCCCC-CC--CcchhHHH------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADN--LKYIAGDMLR-FI--PPANAFLF------ 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~r--i~~~~~D~~~-~~--p~~D~i~~------ 213 (301)
...+|||||||.|.++..+++.. .+++++|+ ++.++.|+. .+. |++.+....+ .. ..||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 35899999999999999999996 89999999 888888874 233 3355555444 22 24999988
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc---cCCccCCHHHHHHHHHhCCCcee
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+++++.+.+|| ||.+++..........- .......+=+.++.. .-.+...++|+..++.++|++..
T Consensus 137 v~dp~~~~~~c~~lvkP---~G~lf~STinrt~ka~~--~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 137 VPDPESFLRACAKLVKP---GGILFLSTINRTLKAYL--LAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred cCCHHHHHHHHHHHcCC---CcEEEEeccccCHHHHH--HHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 899999999999 88777666542221110 000000000111111 12345688999999999999998
Q ss_pred EEEec
Q 043533 286 KITPI 290 (301)
Q Consensus 286 ~~~~~ 290 (301)
....+
T Consensus 212 ~~~g~ 216 (243)
T COG2227 212 DRKGL 216 (243)
T ss_pred eecce
Confidence 87654
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-09 Score=93.63 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=54.8
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEeCCCCCCCCc-chhHHH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----A-DNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~-~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
+|||||||+|..++.+++++|+++++++|+ |.+++.|+. + .|+.++.+|+|++++. ||+|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe
Confidence 799999999999999999999999999999 888888875 2 5677777899988775 898887
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-10 Score=99.78 Aligned_cols=83 Identities=19% Similarity=0.403 Sum_probs=68.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH-------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~------- 213 (301)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ .++|+++.+|+++.+|. +|+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887764 35799999999875543 787763
Q ss_pred -----------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -----------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -----------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++.+.|+| ||+++ +|.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~-~E~ 263 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLV-VEV 263 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEE-EEE
Confidence 567888888998 77554 453
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=89.09 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=94.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEeCCCCC-C-CCc--chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLK-YIAGDMLR-F-IPP--ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~-~~~~D~~~-~-~p~--~D~i~~-- 213 (301)
++...||+||||||..-.- ...-|..+++.+|- |.|.+.+.+ ...+. |+.++..+ + +++ +|.|+.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4456789999999986432 22336789999998 666665543 56677 88888866 4 454 898876
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
+.|+++++.|+| ||+++++|+...+.+.-+.+ .+...+-.......|--.|.+ .-+.|++|-|+.
T Consensus 154 vLCSve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd-~~e~Leda~f~~ 227 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRD-TGELLEDAEFSI 227 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehh-HHHHhhhccccc
Confidence 999999999999 99999999987766543211 122233221222445444543 456788999998
Q ss_pred eEEEecC
Q 043533 285 YKITPIF 291 (301)
Q Consensus 285 ~~~~~~~ 291 (301)
.+.....
T Consensus 228 ~~~kr~~ 234 (252)
T KOG4300|consen 228 DSCKRFN 234 (252)
T ss_pred chhhccc
Confidence 8776654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=96.39 Aligned_cols=63 Identities=17% Similarity=0.392 Sum_probs=54.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++++. +|+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEE
Confidence 6899999999999999999999999999999 888887774 35699999999886653 787664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-09 Score=97.24 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=93.3
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIP 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p 206 (301)
.++ +.+. ......+||||||+|.++..+++++|+..++++|+ +.++..+.+ -++|.++.+|+.. .+|
T Consensus 113 ~~~-~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFL-DFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHH-HHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC
Confidence 345 5554 34467999999999999999999999999999999 777666643 4679999999743 355
Q ss_pred c--chhHHH-----------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCcc
Q 043533 207 P--ANAFLF-----------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE 267 (301)
Q Consensus 207 ~--~D~i~~-----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~ 267 (301)
+ +|.|++ .+|+.++++|+| ||.+.+..-..+--... ...+............+...
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~~~y~~~~--~e~~~~~~~~~~~~~~~~~~ 264 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDSELYFEFS--LELFLKLPKAKIEIKKNAQL 264 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCC---CcEEEEEEECHHHHHHH--HHHHHhCCCceeecccCCCC
Confidence 3 676665 589999999999 89887755322110000 00000000111111111222
Q ss_pred CCHHHHHHHHHhCCCceeEEE
Q 043533 268 RTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 268 rt~~e~~~ll~~aGf~~~~~~ 288 (301)
+...+|++-..+.|-.+..+.
T Consensus 265 ~i~TkyE~r~~~~G~~Iy~l~ 285 (390)
T PRK14121 265 EVSSKYEDRWKKQNKDIYDLR 285 (390)
T ss_pred CCCCHHHHHHHHCCCCEEEEE
Confidence 345688888888998776653
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-09 Score=94.51 Aligned_cols=87 Identities=11% Similarity=0.303 Sum_probs=74.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC--cchhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR---FIP--PANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~---~~p--~~D~i~~ 213 (301)
.+..++|||+|||.|..+..++++.++++++++|+ +++.+.|++ .+||+++.+|+.+ ..+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 55589999999999999999999999999999999 777777764 6899999999865 122 2899988
Q ss_pred -----------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++.+.+.|+| ||++.++-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~ 170 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVH 170 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEe
Confidence 889999999999 89888765
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-09 Score=91.22 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=54.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC-CCc-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRF-IPP-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~-~p~-~D~i~~ 213 (301)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+++. .+. +|+|++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEE
Confidence 46999999999999999999888889999999 889888775 46799999999873 333 888887
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=9e-10 Score=85.22 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=70.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CCc--chhHHH----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F--IPP--ANAFLF---- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~--~p~--~D~i~~---- 213 (301)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .+|++++.+|+++ . .+. +|+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 888776663 4789999999876 3 443 898887
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 789999999999 88877653
|
... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-09 Score=88.50 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=70.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~- 207 (301)
+.++ +.++ .-+..++||||||.|..+.-|+++ +..++++|. +..++.+.+ .-.|+....|+.+ .++.
T Consensus 20 s~v~-~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~ 94 (192)
T PF03848_consen 20 SEVL-EAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEE 94 (192)
T ss_dssp HHHH-HHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTT
T ss_pred HHHH-HHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCC
Confidence 4466 6666 556789999999999999999999 678999999 656655442 3448889999977 6665
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
||+|++ ++++++.++++| ||.+++...+
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~ 135 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFM 135 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEec
Confidence 998753 799999999999 7876765553
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=88.74 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=69.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc--chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP--ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~--~D~i~~----- 213 (301)
..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+.++. ||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4556799999999999999998763 458999999 788876654 34688899998764442 787764
Q ss_pred ---------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ---------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ---------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++++++.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 377889999999 89988765433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-09 Score=101.99 Aligned_cols=84 Identities=15% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
..+|||||||+|.+++.+++.+|+.+++++|+ +.+++.|++ .++++++.+|++++++. ||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888887774 36899999998775432 666664
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++++++.+.|+| ||.++ +|.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~-lEi 269 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKII-LEI 269 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEE-EEE
Confidence 678888999999 77664 453
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-08 Score=82.26 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=99.5
Q ss_pred hHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchH----HHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCc
Q 043533 85 PFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAI----NQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGN 160 (301)
Q Consensus 85 ~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~----~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~ 160 (301)
-+..|.|.|-|.. + ...++.+.++|+. .+.|++.+..+...-++.++ +.+. ..++...|.|+|||.
T Consensus 14 rFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI-~~l~-~~~~~~viaD~GCGd 83 (219)
T PF05148_consen 14 RFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVII-EWLK-KRPKSLVIADFGCGD 83 (219)
T ss_dssp HHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHH-HHHC-TS-TTS-EEEES-TT
T ss_pred chHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHH-HHHH-hcCCCEEEEECCCch
Confidence 3455666665543 1 1223445566654 45666666666655567777 6665 245557999999999
Q ss_pred cHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------HHHHHHHHhcccCC
Q 043533 161 VSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF----------KILKKRREAIASNG 227 (301)
Q Consensus 161 G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~----------~iL~~~~~aL~p~~ 227 (301)
+.++..+.+ ..++.-+|+-.. .++| +.+|+.. |+++ .|++++ ..|+++++.|+|
T Consensus 84 A~la~~~~~---~~~V~SfDLva~------n~~V--tacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~-- 150 (219)
T PF05148_consen 84 AKLAKAVPN---KHKVHSFDLVAP------NPRV--TACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKP-- 150 (219)
T ss_dssp -HHHHH--S------EEEEESS-S------STTE--EES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEE--
T ss_pred HHHHHhccc---CceEEEeeccCC------CCCE--EEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheecc--
Confidence 999976642 347888998332 3444 5789977 8876 787664 999999999999
Q ss_pred CCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 228 ERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 228 ~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
||.|.|.|.... +- ..+++.+.+++.||+....-.......+++.+
T Consensus 151 -~G~L~IAEV~SR-------------f~-------------~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 151 -GGILKIAEVKSR-------------FE-------------NVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp -EEEEEEEEEGGG--------------S--------------HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred -CcEEEEEEeccc-------------Cc-------------CHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 899999996221 11 34567788889999988865444555555544
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.4e-09 Score=89.00 Aligned_cols=142 Identities=10% Similarity=0.113 Sum_probs=94.5
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------------- 190 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------------- 190 (301)
..+..+ +.++..+-....+|||||..|.++..+++.+-...++++|+ +..|..|++
T Consensus 44 ~~D~rL-k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~ 122 (288)
T KOG2899|consen 44 DSDPRL-KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGV 122 (288)
T ss_pred CCChhh-hhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccc
Confidence 345567 77764566789999999999999999999998889999999 777776653
Q ss_pred --------------------------CCCeEEEeCCCCC-CCCcchhHHH-----------------HHHHHHHHhcccC
Q 043533 191 --------------------------ADNLKYIAGDMLR-FIPPANAFLF-----------------KILKKRREAIASN 226 (301)
Q Consensus 191 --------------------------~~ri~~~~~D~~~-~~p~~D~i~~-----------------~iL~~~~~aL~p~ 226 (301)
..|..+..-||.+ ..|.||+|++ ++|+++++.|.|
T Consensus 123 ~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p- 201 (288)
T KOG2899|consen 123 QFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP- 201 (288)
T ss_pred ccccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc-
Confidence 1223333444554 3556898887 999999999999
Q ss_pred CCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhC--CCceeE
Q 043533 227 GERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA--VFSHYK 286 (301)
Q Consensus 227 ~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~a--Gf~~~~ 286 (301)
|| ++|+|+-.... +...........+ ..---....+.+..|+.+. ||+.+.
T Consensus 202 --gG-iLvvEPQpWks-----Y~kaar~~e~~~~-ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 202 --GG-ILVVEPQPWKS-----YKKAARRSEKLAA-NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --Cc-EEEEcCCchHH-----HHHHHHHHHHhhc-CccceecCHHHHHhhhhhhhhheeeec
Confidence 55 77777533322 1111111111100 1112245788889999887 666553
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.4e-09 Score=88.07 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~p~-~D~i~~ 213 (301)
.....+|||+|||+|.++..+++. .|..+++++|+ +++++.+++ .++++++.+|+.+. .+. +|.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 566789999999999999999886 46789999999 888886653 36899999998652 223 898876
Q ss_pred --------HHHHHHHHhcccCCCCcEEEE
Q 043533 214 --------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i 234 (301)
.+|+.+.+.|+| ||++++
T Consensus 118 ~~~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GGGSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCCcccHHHHHHHHHHHcCC---CcEEEE
Confidence 899999999999 888865
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-09 Score=89.50 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=95.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-----CCc--chhHHH--
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF-----IPP--ANAFLF-- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~-----~p~--~D~i~~-- 213 (301)
.+|++||||.|.+..-|++.+|+ +++..+|. |.+++..++ ..|+.....|+..+ .+. .|++++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999888 99999999 888888775 34555445566542 222 787766
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCc---cCCHHHHHHHHHh
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGK---ERTESEWAKLFFD 279 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~---~rt~~e~~~ll~~ 279 (301)
..++++++.|+| ||.|++-|...-+-..-. +. ....++-+..+...|. ..+.+++++|+.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 999999999999 999998887554321110 00 0123344444443342 4699999999999
Q ss_pred CCCceeEE
Q 043533 280 AVFSHYKI 287 (301)
Q Consensus 280 aGf~~~~~ 287 (301)
|||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99998764
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=85.27 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=82.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMLR-FI-- 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~D~~~-~~-- 205 (301)
....+|||+|||.|..+..|+++ +.+++++|+ |.+++.+. +..+|+++.+|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999987 678999999 77777531 13579999999987 32
Q ss_pred -CcchhHH----H---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhhhhhhhhchhhccccCCccCCH
Q 043533 206 -PPANAFL----F---------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 206 -p~~D~i~----~---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
+.||.|+ + +.++++.++|+| ||+++++....++... ++ -...+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gp------------------p~~~~~ 169 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGP------------------PFSVSP 169 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCc------------------CCCCCH
Confidence 2244333 2 789999999999 8877776654432211 11 012588
Q ss_pred HHHHHHHHhCCCceeEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~ 289 (301)
+|++++|.. +|.+..+..
T Consensus 170 ~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHHhcC-CceEEEEee
Confidence 899998864 455554433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=85.46 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=65.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CCc--chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMLRF---------IPP--ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~---------~p~--~D~i~~- 213 (301)
+.+..+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ ++. +|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 3556799999999999999999986 56799999995532 234688999998762 332 777774
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+.+++.|+| ||.+++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 478999999999 89888764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=91.43 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=66.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~----- 213 (301)
....+|||||||+|.+++.+++.. ..+++++|+ |.+++.+++ .+++.+..+|.....+. ||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 345899999999999999888754 458999999 888887764 35677776664332333 898875
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++++.|+| ||.+++...
T Consensus 237 ~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 237 VIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 788999999999 898877654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=87.94 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=81.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEeCCCCC-CCC-cchhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLK----YIAGDMLR-FIP-PANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~----~~~~D~~~-~~p-~~D~i~~--- 213 (301)
..++.+|+|||||+|.++++.++... .+++++|+ |..++.++. .+.|. ....+..+ +.. .||+|+.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 35789999999999999999999863 47999999 888887775 33343 22223322 222 2898887
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++...+.+.++| ||++++.-. +.+. .+...+.+.++||+++++.
T Consensus 239 A~vl~~La~~~~~~lkp---gg~lIlSGI-l~~q---------------------------~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AEVLVELAPDIKRLLKP---GGRLILSGI-LEDQ---------------------------AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHHHHHHHcCC---CceEEEEee-hHhH---------------------------HHHHHHHHHhCCCeEeEEE
Confidence 677778888888 776665542 2211 2334677888899998887
Q ss_pred ecCCceeE
Q 043533 289 PIFGMKSL 296 (301)
Q Consensus 289 ~~~~~~~~ 296 (301)
.-..+..+
T Consensus 288 ~~~eW~~i 295 (300)
T COG2264 288 EREEWVAI 295 (300)
T ss_pred ecCCEEEE
Confidence 76554443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=80.84 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=86.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCc--chhHHH--------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR---FIPP--ANAFLF-------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~---~~p~--~D~i~~-------- 213 (301)
++..+|||||||.|.++..|.+. .++++.++|+ ++-+..+. ...++++++|+-+ .+|+ ||.|++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 45689999999999999888875 5899999999 55444444 4578899999876 3665 998888
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc---------c-cCCccCCHHHHHHHHHhC
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV---------N-ATGKERTESEWAKLFFDA 280 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---------~-~~g~~rt~~e~~~ll~~a 280 (301)
++|+++.++ |.+.+|.-+-.. -... .....+.=.|-+ . .|=+..|..+++++.++.
T Consensus 90 ~P~~vL~EmlRV------gr~~IVsFPNFg--~W~~---R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RPDEVLEEMLRV------GRRAIVSFPNFG--HWRN---RLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHHHHHHHHHHh------cCeEEEEecChH--HHHH---HHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 666666544 444444332110 0000 000000000000 1 233456999999999999
Q ss_pred CCceeEEEecCC
Q 043533 281 VFSHYKITPIFG 292 (301)
Q Consensus 281 Gf~~~~~~~~~~ 292 (301)
|+++.+...+.+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999999887743
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=85.65 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--c
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP--P 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p--~ 207 (301)
.++ ..++ ..+..+|||||||+|.++..+++... +++++|. +++++.+++ ..+++++.+|+.+..+ .
T Consensus 69 ~l~-~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 69 RMT-ELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHH-HhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 344 4454 56678999999999999988887753 7999998 888777664 3469999999877443 2
Q ss_pred -chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 -ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 -~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||+|++ .+.+.+.+.|+| ||++++.-
T Consensus 144 ~fD~I~~~~~~~~~~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 144 PFDRILVTAAAPEIPRALLEQLKE---GGILVAPV 175 (212)
T ss_pred CcCEEEEccCchhhhHHHHHhcCC---CcEEEEEE
Confidence 999887 788899999999 88877643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=89.01 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCC----c-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLRFIP----P-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~~~p----~-~D~i~~ 213 (301)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+++.++ . +|+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEE
Confidence 45899999999999999999999999999999 888888775 2346888899876332 2 677664
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=86.21 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC-eEEEeCCCCC--CCCc-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADN-LKYIAGDMLR--FIPP-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~r-i~~~~~D~~~--~~p~-~D~i~~----- 213 (301)
+..+.||+|+|.|..+..++-.+ --++.++|. +.-++.|++ .++ .++...-+.+ |.+. ||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999887554 125777776 777777763 234 3455544433 4444 999997
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
..|+++.++|+| +|.|+|-|.+...... .+|-. .++-.|+.+.|+++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~~----DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDEE----DSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEETT----TTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCCc----cCeeecCHHHHHHHHHHcCCEEE
Confidence 999999999999 8888888887764321 22321 34557899999999999999999
Q ss_pred EEEec
Q 043533 286 KITPI 290 (301)
Q Consensus 286 ~~~~~ 290 (301)
+...-
T Consensus 198 ~~~~Q 202 (218)
T PF05891_consen 198 KEEKQ 202 (218)
T ss_dssp EEEE-
T ss_pred Eeccc
Confidence 86544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-08 Score=91.81 Aligned_cols=84 Identities=14% Similarity=0.253 Sum_probs=68.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC--C-Cc-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRF--I-PP-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~--~-p~-~D~i 211 (301)
+++++||+||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+- . +. ||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 5678999999999999999997655568999999 888887764 46899999998752 2 23 8988
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEE
Q 043533 212 LF---------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++ .+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 87 678999999999 786654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-09 Score=86.47 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=67.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
-....+++|+|||.|.++..|+.++ -+++++|. +..++.|++ .++|+|+.+|+-+..|. ||+|++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4556799999999999999999986 37999999 888888875 58899999999776665 999887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++.++|+| ||.+++-..
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 688999999999 888877654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=92.64 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CCc-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRF---IPP-A 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~---~p~-~ 208 (301)
..++++||+||||+|..+..+++..+..+++++|+ |+|++.|+. .+|++++.+|..+- .+. |
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45678999999999999999998666679999999 888887762 57999999998762 233 8
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
|+|++ .+++.+++.|+| ||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 88887 589999999999 7866554
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=87.88 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=79.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-c-chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-P-ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-~-~D~i~~---- 213 (301)
.+..+|||||||||.+++..++... -+++++|+ |.+++.+++ .+++.+. . ..+.+ . ||+|+.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 4567999999999999999999864 47999999 888887774 4567553 1 12232 3 898876
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
.++..+.+.|+| ||.+++.-. +.+. .+++.+.+++ ||+..+...
T Consensus 236 ~vL~~l~~~~~~~l~~---~G~lIlSGI-l~~~---------------------------~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 236 DVLLELAPDIASLLKP---GGYLILSGI-LEEQ---------------------------EDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp HHHHHHHHHCHHHEEE---EEEEEEEEE-EGGG---------------------------HHHHHHHHHT-TEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCC---CCEEEEccc-cHHH---------------------------HHHHHHHHHC-CCEEEEEEE
Confidence 777778889999 676665443 3221 2334566666 999888877
Q ss_pred cCCceeEE
Q 043533 290 IFGMKSLI 297 (301)
Q Consensus 290 ~~~~~~~i 297 (301)
-..+..++
T Consensus 284 ~~~W~~l~ 291 (295)
T PF06325_consen 284 EGEWVALV 291 (295)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 76655544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=91.31 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=68.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-c-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIP-P-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p-~-~D~ 210 (301)
.+++++||+||||.|.++..+++..+-.+++++|+ +.|++.+++ .+|++++.+|.++ ..+ . ||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999986633458999999 778887764 4699999999754 333 3 899
Q ss_pred HHH---------------HHHHHHHHhcccCCCCcEEEE
Q 043533 211 FLF---------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 211 i~~---------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
|++ .+++.++++|+| ||.+++
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 887 679999999999 786654
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-08 Score=81.98 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=75.6
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCc--chhHHH-----------HHHHHHHHhcccCCCCcEE
Q 043533 177 TVLDL-PHAVANLPE---------ADNLKYIAGDMLR-FIPP--ANAFLF-----------KILKKRREAIASNGERGKV 232 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~-~~p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l 232 (301)
+++|. ++|++.|++ ..+|+|+.+|+.+ |+++ ||+|++ ++|++++++|+| ||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp---GG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP---GSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc---CeEE
Confidence 46888 888887742 2479999999987 7765 998877 889999999999 9999
Q ss_pred EEEeeeeCCCccchhhhhhhhhhchhhc-----cc----cC------CccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 233 IIIDIVINAEEEEHELTETKFLFDIVMS-----VN----AT------GKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 233 ~i~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~----~~------g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
+|.|...+++...... .......... .. .. ...++.+|+.++|+++||+.++.+...
T Consensus 78 ~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 78 SILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 9999865543211100 0000000000 00 00 134589999999999999999887764
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.2e-08 Score=88.64 Aligned_cols=93 Identities=13% Similarity=0.221 Sum_probs=73.3
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP--- 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p--- 206 (301)
++ +.++ ..+..+|||||||+|.++..+++..+. .+++++|. +++++.|++ .+++.++.+|..+..+
T Consensus 72 ll-~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 72 FM-EWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HH-HhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 44 4444 566789999999999999999998864 57999999 888876654 3579999999876332
Q ss_pred cchhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 PANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.||+|++ .+...+.+.|+| ||++++..
T Consensus 149 ~fD~Ii~~~g~~~ip~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEVPETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHhHHHHHHhcCC---CCEEEEEe
Confidence 3899887 677788899999 89887743
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-08 Score=78.83 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=75.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CCc-chhHHHHHHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--IPP-ANAFLFKILKK 218 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--~p~-~D~i~~~iL~~ 218 (301)
..+|||+|||.|.++..|++..-..+.+++|. +..++.|+. .+.|+|++.|+++| .+. ||+|+=
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD----- 142 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD----- 142 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee-----
Confidence 34999999999999999999854456888998 777666652 45699999999985 333 888753
Q ss_pred HHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh-hccccCC------ccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 219 RREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV-MSVNATG------KERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 219 ~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~g------~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
. |++=.+... |+..... ...++|.. -+...+| -..|.+|+.+.++.-||+.....++|
T Consensus 143 ------K----GT~DAisLs-~d~~~~r----~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 143 ------K----GTLDAISLS-PDGPVGR----LVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ------c----CceeeeecC-CCCcccc----eeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEeeccc
Confidence 1 222111111 0111000 00111110 0000111 13689999999999999988877775
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-08 Score=83.64 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=72.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I------PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 208 (301)
..+.++|||||||+|.-+..+++..| +.+++.+|. ++.++.|++ .++|+++.+|+.+- + +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 56689999999999999999998765 789999999 788777764 57899999998762 1 239
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ ..+..+.+.|+| || ++++|.++.
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~---GG-~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKV---GG-IIAFDNTLW 181 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCC---Ce-EEEEEcCCc
Confidence 99987 888999999999 66 556565443
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-08 Score=81.11 Aligned_cols=82 Identities=16% Similarity=0.305 Sum_probs=64.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CCc--chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMLRF---------IPP--ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~---------~p~--~D~i~~- 213 (301)
..+..+|||+|||+|.++..+++++ +..+++++|+.+.. ..++++++.+|+.++ .+. +|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4667899999999999999999887 66789999994432 235788888888652 232 777663
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|+++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 588999999999 8988775
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-07 Score=82.30 Aligned_cols=118 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCCC----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMLRF---- 204 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~D~~~~---- 204 (301)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45579999999999999999986 678999999 77676541 146799999999873
Q ss_pred CCcchhHH----H---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc-cchhhhhhhhhhchhhccccCCccCCH
Q 043533 205 IPPANAFL----F---------KILKKRREAIASNGERGKVIIIDIVINAEE-EEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 205 ~p~~D~i~----~---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~-~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
.+.+|+|+ + +.++.+.++|+| ||+++++....++.. .+| . ...+.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gP-------p-----------~~~~~ 172 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGP-------P-----------FSVSD 172 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCC-------C-----------CCCCH
Confidence 12244443 2 789999999999 887666554443221 111 0 13588
Q ss_pred HHHHHHHHhCCCceeEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~ 289 (301)
+|+++++.. +|.+..+..
T Consensus 173 ~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 173 EEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHhcC-CceEEEeee
Confidence 999999963 266555443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.9e-08 Score=79.63 Aligned_cols=95 Identities=24% Similarity=0.370 Sum_probs=69.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
..++ +.++ +.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 3 ~~i~-~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIV-RAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHH-HhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3456 6666 666789999999999999999988 568999999 777776654 4689999999987 5654
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+|.|+. .++.++.+.... - .+.+++++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~-~-~~~~l~~q~ 113 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPA-F-RDAVLMVQK 113 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCC-c-ceEEEEEEH
Confidence 787766 666666654331 0 245556654
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-08 Score=84.32 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=72.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~ 207 (301)
..++ +.++ +....+|||||||+|.++..|++.. +.-+++.+|. ++.++.|++ ..+|+++.+|.....|.
T Consensus 62 a~~l-~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 62 ARML-EALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHH-HHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHH-HHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 4466 7776 7888999999999999999999874 5557999998 888888875 46899999998775553
Q ss_pred ---chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 ---ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 ---~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||.|++ .+=..+.+.|++ ||++++--
T Consensus 139 ~apfD~I~v~~a~~~ip~~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPEALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--HHHHHTEEE---EEEEEEEE
T ss_pred CCCcCEEEEeeccchHHHHHHHhcCC---CcEEEEEE
Confidence 999988 777888899999 88887743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=79.97 Aligned_cols=94 Identities=9% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~- 207 (301)
..++ ..++ ++...+||+||||+|..+..|++..- +++.+|. ++..+.|++ -.+|.++.+|-..-+|.
T Consensus 62 A~m~-~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 62 ARML-QLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHH-HHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 4456 6666 78889999999999999999999864 8999998 888888875 45699999999886664
Q ss_pred --chhHHH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 --ANAFLF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 --~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
||.|+. .+=+.+.+.|++ ||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHHHHHhccc---CCEEEEEEc
Confidence 999988 555777888999 899888664
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-08 Score=92.83 Aligned_cols=84 Identities=14% Similarity=0.292 Sum_probs=69.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCC---CCCc-c
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLR---FIPP-A 208 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~---~~p~-~ 208 (301)
+++++|||||||+|..+..+++ +|. .+++++|+ |++++.+++ .+|++++.+|.++ ..++ |
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 5578999999999999999997 565 79999999 999988765 2689999999876 2334 8
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
|+|++ .+++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 98887 478999999999 7876654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=88.88 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=74.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC-c-ch
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF---IP-P-AN 209 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~---~p-~-~D 209 (301)
..++ .....+|||+|||+|..+..+++..++.+++++|+ +.+++.+++ +-+++++.+|+.+. .+ . ||
T Consensus 238 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 238 TLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred HHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCC
Confidence 4444 55678999999999999999999998889999999 888877764 33578899998762 22 3 88
Q ss_pred hHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 210 AFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 210 ~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.|++ ++|+++++.|+| ||++++....+
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 7762 589999999999 89888776533
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=81.58 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc-chhHHH---------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAF---PGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP-ANAFLF--------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~---P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~-~D~i~~--------- 213 (301)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|+. ..++.++.+|+.. +.+. ||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 888888876 4578999999976 4444 888887
Q ss_pred --------------HHHHHHHHhccc
Q 043533 214 --------------KILKKRREAIAS 225 (301)
Q Consensus 214 --------------~iL~~~~~aL~p 225 (301)
++++++.+.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC
Confidence 688888886666
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=78.30 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcccccchHHHHH---hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCe
Q 043533 119 INQRFNEAMASDSEIMTSFVVK---SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNL 194 (301)
Q Consensus 119 ~~~~f~~am~~~~~~~~~~~~~---~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri 194 (301)
+.+.|....-..-...++..++ ...+ ...++++||+|||||..+..|...- -+.+++|+ ..|++.|.+.+-.
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y 169 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY 169 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch
Confidence 3455555544322222333331 3333 4458999999999999999998774 35788999 7899988762211
Q ss_pred E-EEeC---CCCCC-CCc-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhch
Q 043533 195 K-YIAG---DMLRF-IPP-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 257 (301)
Q Consensus 195 ~-~~~~---D~~~~-~p~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~ 257 (301)
. ...+ +|... -++ +|+|.. .++--+...|+| ||.+...-...++... + .+..-
T Consensus 170 D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~---gGlfaFSvE~l~~~~~---f----~l~ps 239 (287)
T COG4976 170 DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAP---GGLFAFSVETLPDDGG---F----VLGPS 239 (287)
T ss_pred HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCC---CceEEEEecccCCCCC---e----ecchh
Confidence 1 1111 23331 222 677665 889999999999 7755443333333221 0 00000
Q ss_pred hhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 258 ~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
. -.-.++.-.+++++..||.++.+..+
T Consensus 240 ~------RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 240 Q------RYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred h------hhccchHHHHHHHHhcCceEEEeecc
Confidence 0 01235677899999999999998876
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-07 Score=85.06 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=67.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
+.+..+|||+|||+|.++++.+.. +.+++++|+ +.++..++. .+.+.+..+|+.+ +.+. +|+|++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 566779999999999999886654 678999999 888876653 2348889999987 6543 787764
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+++++.|+| ||++++.-
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~ 294 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAV 294 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEE
Confidence 789999999999 89887653
|
This family is found exclusively in the Archaea. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=69.10 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=64.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCCC---Cc-chhHHH-------
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------EADNLKYIAGDMLRFI---PP-ANAFLF------- 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------~~~ri~~~~~D~~~~~---p~-~D~i~~------- 213 (301)
+++|+|||.|.++..+++ .+..+++++|+ +..+..++ ...+++++.+|+.+.. +. +|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67889999999 66655544 1578999999998732 22 787665
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++++.+.|+| ||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 788999999999 7877764
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-07 Score=80.23 Aligned_cols=83 Identities=16% Similarity=0.347 Sum_probs=64.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC-c-chhHHH----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF----IP-P-ANAFLF---- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~----~p-~-~D~i~~---- 213 (301)
..+||||||.|.++..+++.+|+..++++|+ ...+..+.. .+++.++.+|+..- ++ . .|-|++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 4899999999999999999999999999999 555544432 68999999998751 33 2 454444
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..|..+++.|+| ||.|.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 999999999999 88776654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=88.60 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=72.8
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCc-c
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---IPP-A 208 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~p~-~ 208 (301)
..++ ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ .++|+++.+|+.+. ++. |
T Consensus 244 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 244 PALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 4444 5566899999999999999999886 6789999999 787776653 24599999998752 343 8
Q ss_pred hhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 209 NAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 209 D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
|+|++ .+|+++.+.|+| ||+++.....
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs 381 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCT 381 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCC
Confidence 87763 589999999999 8988765543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=84.22 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=67.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i~ 212 (301)
+++++||+||||+|.++..+++..+..+++++|+ +++++.+++ .+|++++.+|.++ ..+. ||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766778999999 788776653 3688999988765 1233 78776
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ ..++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 5 678999999999 7877765
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=74.51 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=94.4
Q ss_pred hHHhhcCchHHHHHHH----HhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 043533 110 WEFMNQNPAINQRFNE----AMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAV 185 (301)
Q Consensus 110 ~e~~~~~~~~~~~f~~----am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~ 185 (301)
++.+..+|..-+.|.+ ....+...-.+.++ +.+. .-++...|.|+|||.+.++. . -.-++..+||-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii-~~ik-~r~~~~vIaD~GCGEakiA~----~-~~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVII-RKIK-RRPKNIVIADFGCGEAKIAS----S-ERHKVHSFDLVAV- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHH-HHHH-hCcCceEEEecccchhhhhh----c-cccceeeeeeecC-
Confidence 3444556654444444 44444444456677 6655 24667899999999998887 1 1236888888544
Q ss_pred hcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh
Q 043533 186 ANLPEADNLKYIAGDMLR-FIPP--ANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK 252 (301)
Q Consensus 186 ~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~ 252 (301)
.+|| +.+|+.+ |+++ .|++++ ..++++++.|++ ||.|+|.|.-+
T Consensus 211 -----~~~V--~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~---gG~l~IAEv~S------------- 267 (325)
T KOG3045|consen 211 -----NERV--IACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKP---GGLLYIAEVKS------------- 267 (325)
T ss_pred -----CCce--eeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhcc---CceEEEEehhh-------------
Confidence 3444 5789988 7775 776543 899999999999 99999998622
Q ss_pred hhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEE
Q 043533 253 FLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEV 299 (301)
Q Consensus 253 ~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a 299 (301)
++.| ..++.+.|.+.||....+.-......+++.
T Consensus 268 Rf~d-------------v~~f~r~l~~lGF~~~~~d~~n~~F~lfef 301 (325)
T KOG3045|consen 268 RFSD-------------VKGFVRALTKLGFDVKHKDVSNKYFTLFEF 301 (325)
T ss_pred hccc-------------HHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence 1222 222567777888877766554444444443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.8e-07 Score=77.28 Aligned_cols=109 Identities=15% Similarity=0.289 Sum_probs=88.0
Q ss_pred Hhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CC
Q 043533 126 AMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISE-AFPGIKCTVLDL-PHAVANLPE-------AD 192 (301)
Q Consensus 126 am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~P~~~~~~~Dl-p~~~~~a~~-------~~ 192 (301)
.|...++.+ +.-++ .... .....+|+|.|.|+|.++..|++ -+|.-+++.+|. ++..+.|++ .+
T Consensus 70 ~~~R~tQiIyPKD~~~I~-~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIV-ARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred hCcCCCceecCCCHHHHH-HHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence 366555533 23355 5555 78889999999999999999997 578899999999 777777775 57
Q ss_pred CeEEEeCCCCCC-CCc-chhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 193 NLKYIAGDMLRF-IPP-ANAFLF------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 193 ri~~~~~D~~~~-~p~-~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
++++..+|..+. .++ +|++++ ..+.+++++|+| ||.+.++-+..+
T Consensus 147 ~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 147 RVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred ceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 799999999884 454 999999 999999999999 898888776544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-07 Score=86.16 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=84.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---- 204 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---- 204 (301)
..++ +.++ ..+..+|||+|||+|.++..+++.. .+++++|. +++++.|++ .++++|+.+|+.+.
T Consensus 287 ~~vl-~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 287 ARAL-EWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHH-HHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 3344 4443 4556799999999999999999886 58999999 888887774 35799999998642
Q ss_pred -CC-c-chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 205 -IP-P-ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 205 -~p-~-~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
++ . +|+|++ .+++.+.+ ++| .+++.+.. ++. ....|+.
T Consensus 362 ~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~----~~ivyvSC---np~--------tlaRDl~--------------- 410 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAGAAEVMQALAK-LGP----KRIVYVSC---NPA--------TLARDAG--------------- 410 (443)
T ss_pred hhhcCCCCEEEECcCCcChHHHHHHHHh-cCC----CeEEEEEe---ChH--------HhhccHH---------------
Confidence 22 2 788887 55555544 566 34544443 111 1223433
Q ss_pred HHHHHhCCCceeEEEecC--CceeEEEE
Q 043533 274 AKLFFDAVFSHYKITPIF--GMKSLIEV 299 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~~~--~~~~~i~a 299 (301)
.|.+.||++.++.++. ..+.-||+
T Consensus 411 --~L~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 411 --VLVEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred --HHhhCCcEEEEEEEeccCCCCCcEEE
Confidence 3346899999999884 34566665
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-07 Score=86.17 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=73.3
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--C-c-
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI--P-P- 207 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~--p-~- 207 (301)
..++ .....+|||+|||+|..+..+++..++.+++++|. +++++.+++ ..++.++.+|... +. + .
T Consensus 232 ~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 232 TWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 4455 55678999999999999999999988889999999 788776654 1234446677654 22 2 2
Q ss_pred chhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 208 ANAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 208 ~D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
||.|++ ++|+++++.|+| ||++++....+..
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 887763 699999999999 8999888765543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=74.10 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=69.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC-C
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMLR-FI-P 206 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~D~~~-~~-p 206 (301)
.+..+||+.|||.|.-+.-|+++ +.+++++|+ +..++.+. .+.+|++..+|+|+ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999987 567999999 66666631 15689999999998 42 2
Q ss_pred ----cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 207 ----PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 207 ----~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|+|+= +..+++.+.|+| ||+++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 2666442 899999999999 899888876444
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-07 Score=84.96 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C----C-C
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F----I-P 206 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~----~-p 206 (301)
..++ ..+..+|||+|||+|..+..+++.. +..+++++|. +++++.+++ -++|+++.+|+.+ + . +
T Consensus 246 ~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 246 PLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 4444 5567899999999999999999885 4569999999 778877654 2468999999865 3 1 1
Q ss_pred c-chhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 207 P-ANAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 207 ~-~D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
. ||.|++ ++|+++.+.|+| ||+++.....+
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 2 787764 789999999999 89888776544
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-07 Score=80.60 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=73.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i 211 (301)
.+++++||-||||.|.++.++++..+--+++.+|+ |.|++.+++ .+|++++.+|..+ ..+. ||+|
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 35567999999999999999999998889999999 999998875 4899999999876 3454 9999
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
++ ..++.++++|++ +|.++..
T Consensus 154 i~D~tdp~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 154 IVDSTDPVGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EEcCCCCCCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 98 899999999999 6755444
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8e-07 Score=84.38 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~- 213 (301)
..+..+|||+|||+|..+..+++.. +..+++++|+ ++.++.+++ -++++++.+|... + .+. ||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5667899999999999999999875 5679999999 888877764 2468899999865 3 223 777664
Q ss_pred --------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 --------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 --------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|.++++.|+| ||.++.....+
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 679999999999 88766555443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.1e-07 Score=84.80 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=70.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~D~i~~--- 213 (301)
.....+|||+|||+|..+..+++..+ ..+++++|+ +++++.+++ .++|+++.+|+.+..+ . ||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44567999999999999999988754 568999999 888877764 2468999999876223 3 787763
Q ss_pred ------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++++.|+| ||++++....+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence 589999999999 88888766544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=78.43 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEe----CCCCCCC--C-c-chhH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIA----GDMLRFI--P-P-ANAF 211 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~----~D~~~~~--p-~-~D~i 211 (301)
...++||||||+|.+...|+.+.++.+++++|+ +.+++.|+. .++|++.. .+++..+ + + ||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 357999999999999999998889999999999 888887774 35787754 2344432 2 2 9999
Q ss_pred HH---------H----H---HHHHH----------------HhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh
Q 043533 212 LF---------K----I---LKKRR----------------EAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM 259 (301)
Q Consensus 212 ~~---------~----i---L~~~~----------------~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 259 (301)
++ . - .++.. +.+.+ ||.+-++..++.+... +.. ...+-.+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~---~~~-~~gwfts- 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKA---FAK-QVLWFTS- 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHH---HHh-hCcEEEE-
Confidence 98 1 1 22222 11223 5555444444433311 100 1111112
Q ss_pred ccccCCccCCHHHHHHHHHhCCCceeEEEec-CC
Q 043533 260 SVNATGKERTESEWAKLFFDAVFSHYKITPI-FG 292 (301)
Q Consensus 260 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 292 (301)
.-|+.-+...+.+.|++.|.+.+++... .|
T Consensus 266 ---mv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG 296 (321)
T PRK11727 266 ---LVSKKENLPPLYRALKKVGAVEVKTIEMAQG 296 (321)
T ss_pred ---EeeccCCHHHHHHHHHHcCCceEEEEEEeCC
Confidence 2255568999999999999988887765 44
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=90.76 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEeCCCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------------------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------------------~~ri~~~~~D~~~~~p 206 (301)
..+|||||||+|.+++.+++++|..+++++|+ |.+++.|+. .+|++|+.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999999999999 888877642 1489999999988543
Q ss_pred ----cchhHHH
Q 043533 207 ----PANAFLF 213 (301)
Q Consensus 207 ----~~D~i~~ 213 (301)
.+|+|++
T Consensus 199 ~~~~~fDlIVS 209 (1082)
T PLN02672 199 DNNIELDRIVG 209 (1082)
T ss_pred ccCCceEEEEE
Confidence 2898887
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=77.77 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=67.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~---- 213 (301)
|. .+.|||||||+|.++.-.+.+. .-++..++-.+|.+.|++ .+||++++|-..+ ++|+ +|+++.
T Consensus 176 F~-~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQ-DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cC-CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 54 4889999999999999888875 457999999999988875 6899999999988 8998 999886
Q ss_pred ------HHH---HHHHHhcccCCCCcEEE
Q 043533 214 ------KIL---KKRREAIASNGERGKVI 233 (301)
Q Consensus 214 ------~iL---~~~~~aL~p~~~gg~l~ 233 (301)
++| -.+++.|+| .|+.+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCC---CCccc
Confidence 444 345689999 67655
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=77.85 Aligned_cols=68 Identities=22% Similarity=0.307 Sum_probs=55.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~ 207 (301)
+..++ +.++ .....+|||||||+|.++..++++.+ +++++|. +.+++.+++ .++++++.+|+.+ +++.
T Consensus 31 ~~~i~-~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 31 LDKIV-DAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHH-HhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 34466 6555 66678999999999999999999976 8999999 888887764 3689999999987 5543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=74.50 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=83.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-CCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------------------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~D~~~-~~p 206 (301)
.....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ .++|++..+|+|+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 345569999999999999999988 568999999 777766510 4679999999998 322
Q ss_pred ---cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhhhhhhhhchhhccccCCccCC
Q 043533 207 ---PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERT 269 (301)
Q Consensus 207 ---~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~g~~rt 269 (301)
.||+|+= +-.+++++.|+| ||+++++....+.... +|++ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 2666541 899999999999 8985555443332211 1111 136
Q ss_pred HHHHHHHHHhCCCceeEEEe
Q 043533 270 ESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~~~~ 289 (301)
.+|+++++. .+|++.....
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 788999998 8888776654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-06 Score=74.81 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=56.1
Q ss_pred hHHHHHhhhhh-cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEe----CCC
Q 043533 135 TSFVVKSECKQ-IFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIA----GDM 201 (301)
Q Consensus 135 ~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~----~D~ 201 (301)
++.++ +.+.+ .......+||+|||+|..+..++..-|..+++.+|. +.++..|.+ .+|+.++. .|.
T Consensus 134 V~~Vi-d~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 134 VEAVI-DALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHH-HHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 34444 44432 244556899999999999999999999999999999 666665553 68888874 455
Q ss_pred CCCCC--c--chhHHH
Q 043533 202 LRFIP--P--ANAFLF 213 (301)
Q Consensus 202 ~~~~p--~--~D~i~~ 213 (301)
+.+.| . .|++++
T Consensus 213 ~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVS 228 (328)
T ss_pred ccccccccCceeEEec
Confidence 54433 2 677666
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-07 Score=79.44 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------C--Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF-------I--PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~-------~--p~~ 208 (301)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .+||+++.||+.+- - ..|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 56789999999999999999999877 689999999 777777764 57999999998651 1 139
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ ..+..+.+.|+| |.++|+|.++.
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred eEEEEcccccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 99998 888889999999 55777776554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-06 Score=77.50 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=69.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCcchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPPANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~~D~i~~-- 213 (301)
.....+|||+|||+|..+..+++... ..+++++|+ +..++.+++ ..+|+++.+|... + .+.||.|++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45668999999999999999998864 468999999 777776654 2568888888754 2 223787753
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++.+.|+| ||+|+.....+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 699999999999 88776655433
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.6e-07 Score=80.84 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=68.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
+++++||.||||.|..+..+++..+..+++++|+ |++++.+++ .+|++++.+|.++- .+. ||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4578999999999999999998776778999999 899988874 47999999998762 223 88888
Q ss_pred H-----------------HHHH-HHHHhcccCCCCcEEEE
Q 043533 213 F-----------------KILK-KRREAIASNGERGKVII 234 (301)
Q Consensus 213 ~-----------------~iL~-~~~~aL~p~~~gg~l~i 234 (301)
+ ..++ .+++.|+| ||.+++
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 7 4677 89999999 775443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-06 Score=77.03 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=59.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-C--C
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-F--I 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~--~ 205 (301)
..+++ +.+. ..+...+||++||.|..+..+++..| +.+++++|. |++++.+++ .+|++++.+||.+ . .
T Consensus 8 l~Evl-~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVV-DALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHH-HhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 35566 6665 45567999999999999999999986 789999999 999888765 3689999999865 1 2
Q ss_pred C----cchhHHH
Q 043533 206 P----PANAFLF 213 (301)
Q Consensus 206 p----~~D~i~~ 213 (301)
+ .+|.|++
T Consensus 85 ~~~~~~vDgIl~ 96 (296)
T PRK00050 85 AEGLGKVDGILL 96 (296)
T ss_pred HcCCCccCEEEE
Confidence 1 3666665
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=75.89 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=62.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCcc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPPA 208 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~~ 208 (301)
...++ +.++ ..+..+|||||||+|.++..|+++++ +++++|. +.+++.++. .++++++.+|+.+ +++.+
T Consensus 18 ~~~i~-~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~ 92 (253)
T TIGR00755 18 IQKIV-EAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDF 92 (253)
T ss_pred HHHHH-HhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHc
Confidence 44566 6665 66678999999999999999999986 4899999 777776653 4789999999987 66555
Q ss_pred h---hHHH--------HHHHHHHH
Q 043533 209 N---AFLF--------KILKKRRE 221 (301)
Q Consensus 209 D---~i~~--------~iL~~~~~ 221 (301)
| +++. .++.++.+
T Consensus 93 d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 93 PKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred CCcceEEEcCChhhHHHHHHHHhc
Confidence 5 4443 56666654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=73.52 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=61.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-------CCCCC--CCCc-chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA-------GDMLR--FIPP-ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~-------~D~~~--~~p~-~D~i~~--- 213 (301)
.+.+.++|||||+|..++.++..|- ++|+.|. +.|++.|++..+++... .++.+ ..++ .|+|++
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3455999999999977777777754 5999999 99999999855544332 22222 1133 899988
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++.++++++|++ + ||.+.|--
T Consensus 110 ~HWFdle~fy~~~~rvLRk-~-Gg~iavW~ 137 (261)
T KOG3010|consen 110 VHWFDLERFYKEAYRVLRK-D-GGLIAVWN 137 (261)
T ss_pred HHhhchHHHHHHHHHHcCC-C-CCEEEEEE
Confidence 999999999999 2 55555543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=77.38 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=58.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCcc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPPA 208 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~~ 208 (301)
+..++ +.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 18 ~~~iv-~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 18 VDRIV-EYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHH-HhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 45566 6555 6667899999999999999999984 58999999 777776654 4689999999987 66667
Q ss_pred hhHHH
Q 043533 209 NAFLF 213 (301)
Q Consensus 209 D~i~~ 213 (301)
|.|++
T Consensus 93 d~Vv~ 97 (258)
T PRK14896 93 NKVVS 97 (258)
T ss_pred eEEEE
Confidence 76655
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-06 Score=77.66 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-----C-cc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I-----P-PA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~-----p-~~ 208 (301)
..+.++|||||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.||+.+- + . .|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 56789999999999999999998765 678999999 777777764 57999999998652 2 2 39
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
|+|++ ..+..+.+.|+| || ++|+|.++..
T Consensus 196 D~VFIDa~K~~Y~~y~e~~l~lL~~---GG-vIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDADKRMYQDYFELLLQLVRV---GG-VIVMDNVLWH 232 (278)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEecCccC
Confidence 99998 888899999999 55 5666655543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=73.83 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=77.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEe-CCCCC--C--C-CcchhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIA-GDMLR--F--I-PPANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~-~D~~~--~--~-p~~D~i 211 (301)
..+.++||+||.+.|.-++.++..-| +.+++.+|. |+.++.|++ .++|+.+. +|..+ . . +.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 67889999999999999999999999 889999999 888888875 67788888 58765 2 1 239999
Q ss_pred HH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 212 LF--------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 212 ~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
++ ..|..+.+.|+| |+++|+|.++...
T Consensus 137 FIDadK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEeCChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 99 999999999999 5577777766654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-06 Score=75.61 Aligned_cols=83 Identities=10% Similarity=0.131 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRFIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~~p~-~D~i~~- 213 (301)
.+++++||=||||.|..+.++++. |. +++.+|+ ++|++.+++ .+|++++. .+.+...+ ||+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEc
Confidence 467899999999999999999987 55 9999999 888887775 68999886 23222223 999998
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
...+.++++|+| || +++..
T Consensus 147 s~~~~~fy~~~~~~L~~---~G-i~v~Q 170 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKE---DG-VFISV 170 (262)
T ss_pred CCCChHHHHHHHHhcCC---Cc-EEEEC
Confidence 789999999999 66 44443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-06 Score=74.39 Aligned_cols=86 Identities=17% Similarity=0.318 Sum_probs=64.9
Q ss_pred hhhhhcccC--CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCe--EEEeCCCCC--CCCc--chhH
Q 043533 141 SECKQIFEG--LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNL--KYIAGDMLR--FIPP--ANAF 211 (301)
Q Consensus 141 ~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri--~~~~~D~~~--~~p~--~D~i 211 (301)
+.++ +++ ..-|||||||+|..+..|... +-..+++|+ |.|++.|.+ ..+ .++-+|+=+ |++. ||-+
T Consensus 42 ELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 42 ELLA--LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred HHhh--CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceE
Confidence 4444 555 778999999999999888765 468999999 999999885 233 366778877 4433 8876
Q ss_pred HH----------------------HHHHHHHHhcccCCCCcEEEE
Q 043533 212 LF----------------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 212 ~~----------------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++ .++..++.+|++ |++-++
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 65 678889999998 666554
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=74.10 Aligned_cols=113 Identities=12% Similarity=0.242 Sum_probs=80.3
Q ss_pred HHHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----
Q 043533 122 RFNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE----- 190 (301)
Q Consensus 122 ~f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~----- 190 (301)
.|...|...++.+ +.-++ -.++ ...+.+||+.|.|+|.++..|++. .|.-++.-+|. ++-.+.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~-~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYIL-MRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHH-HHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcceeeCchHHHHH-HHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 3555565555543 23355 5566 788899999999999999999975 79999999999 777766664
Q ss_pred --CCCeEEEeCCCCC-CCC----c-chhHHH------HHHHHHHHhc-ccCCCCcEEEEEeeeeC
Q 043533 191 --ADNLKYIAGDMLR-FIP----P-ANAFLF------KILKKRREAI-ASNGERGKVIIIDIVIN 240 (301)
Q Consensus 191 --~~ri~~~~~D~~~-~~p----~-~D~i~~------~iL~~~~~aL-~p~~~gg~l~i~e~~~~ 240 (301)
.++|++..+|..+ .++ . +|.|++ ..+.++.++| ++ ||++.++-+.+.
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~---gG~i~~fsP~ie 150 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKP---GGRICCFSPCIE 150 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EE---EEEEEEEESSHH
T ss_pred CCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcC---CceEEEECCCHH
Confidence 5789999999965 342 2 899998 9999999999 88 898888876554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=72.66 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=62.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---Cc-chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI---PP-ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~---p~-~D~i~~---- 213 (301)
...+|||+|||+|.+++.++.+.. .+++++|. +++++.+++ .++++++.+|+++.+ .. ||+|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999998666653 68999999 777776654 357999999987632 22 899988
Q ss_pred ------HHHHHHHHh--cccCCCCcEEEEEeeee
Q 043533 214 ------KILKKRREA--IASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------~iL~~~~~a--L~p~~~gg~l~i~e~~~ 239 (301)
.+++.+.+. |.| +++++++...
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 555555543 566 4577777544
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=81.68 Aligned_cols=109 Identities=19% Similarity=0.313 Sum_probs=74.1
Q ss_pred hhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhc--ccCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-
Q 043533 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI--FEGLGSLVDVGGGNVSFSRIISEAF----PGIKCTVLDL- 181 (301)
Q Consensus 109 ~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----P~~~~~~~Dl- 181 (301)
.||-+++|+-.-+.|.+|+.. .+. +..... -.....|+|||||+|-++...+++. -..++.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~-D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALK-DRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHH-HHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHH-hhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 577777887777777777632 122 222200 0135789999999999987766553 4678999998
Q ss_pred hHHHhcCC------C-CCCeEEEeCCCCC-CCCc-chhHHH-------------HHHHHHHHhccc
Q 043533 182 PHAVANLP------E-ADNLKYIAGDMLR-FIPP-ANAFLF-------------KILKKRREAIAS 225 (301)
Q Consensus 182 p~~~~~a~------~-~~ri~~~~~D~~~-~~p~-~D~i~~-------------~iL~~~~~aL~p 225 (301)
|.++...+ . .++|+++.+|+.+ ..|+ +|+|++ .+|..+.+-|+|
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP 289 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC
Confidence 44332221 1 6899999999998 7887 999987 778888889999
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=70.22 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=83.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc-chhHHH-----------HH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP-ANAFLF-----------KI 215 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~-~D~i~~-----------~i 215 (301)
...++||||.|.|..+..++..+.+ +.+-+. +.|..+.++ .+++++..|-+..-+. ||+|.+ .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~L 170 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTL 170 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHHHH
Confidence 3578999999999999999998876 666777 667666653 4566665543433333 999988 99
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeeCCCccchh----hhhhhhhhchhhccccCCc--cCCHHHHHHHHHhCCCceeEEEe
Q 043533 216 LKKRREAIASNGERGKVIIIDIVINAEEEEHE----LTETKFLFDIVMSVNATGK--ERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~----~~~~~~~~d~~~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
|+.++++|+| +|++++ -.++|-...... .....-.+++ .|. +-..+.+-+.|+.+||++.++..
T Consensus 171 L~~i~~~l~p---~G~lil-AvVlP~~pyVE~~~g~~~~P~e~l~~------~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 171 LRDIRRALKP---NGRLIL-AVVLPFRPYVEFGGGKSNRPSELLPV------KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHhCC---CCEEEE-EEEecccccEEcCCCCCCCchhhcCC------CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999 776655 344443221100 0000011111 221 11123344889999999999988
Q ss_pred cC
Q 043533 290 IF 291 (301)
Q Consensus 290 ~~ 291 (301)
.|
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 75
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.8e-06 Score=70.40 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=73.5
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC----------------CCCeEEEe
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPE----------------ADNLKYIA 198 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~----------------~~ri~~~~ 198 (301)
++ +.++..+...-+.||||+|+|.++..+++. .|....+++|+ |++++.+++ ..++.++.
T Consensus 72 ~l-e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 AL-EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HH-HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 44 555444677889999999999999988864 34444588998 888876653 46789999
Q ss_pred CCCCCCCC---cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 199 GDMLRFIP---PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 199 ~D~~~~~p---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
||-..-.+ .||.|.+ ++.+++...|++ ||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccCccccHHHHHHhhcc---CCeEEEe
Confidence 99887433 2999998 999999999999 8988873
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-06 Score=71.33 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC--C--CCc--chhHHH---
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----AD-NLKYIAGDMLR--F--IPP--ANAFLF--- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~-ri~~~~~D~~~--~--~p~--~D~i~~--- 213 (301)
...+||||||.|.+...+|+++|+.-+++++. ..++..+.+ .- ++.++.+|+.. + .|. .|-|.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 36899999999999999999999999999999 444333322 33 89999998754 1 222 343333
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh-hhhh-hhhhchhhccc------cCCccCC
Q 043533 214 ----------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE-LTET-KFLFDIVMSVN------ATGKERT 269 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~-~~~~-~~~~d~~~~~~------~~g~~rt 269 (301)
..|+.+.+.|+| ||.|.+..- ....-.- +... .....+..... .....+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aTD---~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFATD---NEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNP 202 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEec---CHHHHHHHHHHHHhcchhhhccccccccccccccCCC
Confidence 899999999999 886665431 1111100 0000 00000111111 1112356
Q ss_pred HHHHHHHHHhCCCceeEEE
Q 043533 270 ESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~~~ 288 (301)
..+|++-....|-.+....
T Consensus 203 ~T~yE~k~~~~g~~i~~l~ 221 (227)
T COG0220 203 VTEYEQKFRRLGHPVYDLE 221 (227)
T ss_pred CcHHHHHHHhCCCceEEEE
Confidence 6889999999998877654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=69.48 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCeEEEecCCccH--HHHHHH-HHCCCCeEEEeec-hHHHhcCCC----CCC--eEEEeCCCCCC---CC--c----ch
Q 043533 149 GLGSLVDVGGGNVS--FSRIIS-EAFPGIKCTVLDL-PHAVANLPE----ADN--LKYIAGDMLRF---IP--P----AN 209 (301)
Q Consensus 149 ~~~~vlDvGgG~G~--~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~----~~r--i~~~~~D~~~~---~p--~----~D 209 (301)
+.+.+||||||.-. ...+++ +..|+.+++-+|. |-++.+++. .++ ..++.+|+.+| +. . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999653 445555 4589999999999 999998885 344 88999999874 22 1 22
Q ss_pred h-----HHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 210 A-----FLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 210 ~-----i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
+ +++ .+++.++++|.| |+.|.|.....+..... . ....++.-.....+..||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~--~---~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPER--A---EALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHH--H---HHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHH--H---HHHHHHHHcCCCCceecCH
Confidence 1 111 999999999999 88888877754432211 1 1122222222245678999
Q ss_pred HHHHHHHHhCCCceeE
Q 043533 271 SEWAKLFFDAVFSHYK 286 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~ 286 (301)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999998 887664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-06 Score=75.74 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=68.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CC-cchh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---F-IP-PANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~-~p-~~D~ 210 (301)
.+++++||=||+|.|..+..+++..+-.+++++|+ |.|++.+++ .+|++++.+|... . .. .||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 35689999999999999999997776779999999 899888774 4799999999754 2 23 3888
Q ss_pred HHH---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|++ ..++.++++|+| ||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 876 899999999999 66554443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.9e-05 Score=68.44 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=81.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCeE-EEeCCCCC----CC----CcchhHHH---H
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVA-NLPEADNLK-YIAGDMLR----FI----PPANAFLF---K 214 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~-~a~~~~ri~-~~~~D~~~----~~----p~~D~i~~---~ 214 (301)
...++||+|||+|.++..+++. +..+++++|. +.++. ..++.+|+. +...|+.. ++ +.+|+.++ .
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 4578999999999999999987 3568999999 53444 455566654 33335442 12 23787776 8
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 215 ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 215 iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
+|..+.+.|+| |-.++++.+-..-.+.. ........|- ....+..+++..++.+.||+...+.+.+
T Consensus 154 ~l~~i~~~l~~---~~~~~L~KPqFE~~~~~--~~~~giv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 154 ILPELDLLLNP---NDLTLLFKPQFEAGREK--KNKKGVVRDK------EAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHhCc---CeEEEEcChHhhhcHhh--cCcCCeecCH------HHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 99999999998 55555554322221110 0000001111 1112345667788888999998877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.5e-06 Score=68.15 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=72.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCcchhHHHHHHHHHHHh
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPPANAFLFKILKKRREA 222 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~iL~~~~~a 222 (301)
..++|+|+|||||.+++..+-..|. +++++|+ |+.++.+++ ..++.|+.+|..+.-..+|.++|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim--------- 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM--------- 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE---------
Confidence 3578999999999999999988764 8999999 999988876 56899999998542222443322
Q ss_pred cccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 223 IASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 223 L~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
.| |=|.. . ...+.++. ...++....+..=++.-+.+-+++..+++|+++....
T Consensus 115 -NP--PFG~~-----~---rhaDr~Fl--~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 115 -NP--PFGSQ-----R---RHADRPFL--LKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred -CC--CCccc-----c---ccCCHHHH--HHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEEEE
Confidence 22 11211 0 00111111 1122222222211122278888899999998887653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-06 Score=78.15 Aligned_cols=86 Identities=7% Similarity=0.110 Sum_probs=65.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCCC------C-cchh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMLRFI------P-PANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~D~~~~~------p-~~D~ 210 (301)
+...++|||+|||+|.++...+.. ...+++.+|+ +.+++.+++ . ++++++.+|+++.+ . .||+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 345689999999999998876643 3458999999 888887764 2 47999999987621 2 2898
Q ss_pred HHH--------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF--------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|++ .+++.+.+.|+| ||.++.+.
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 887 455667889999 78777655
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-05 Score=67.01 Aligned_cols=84 Identities=10% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 043533 149 GLGSLVDVGGGNVS----FSRIISEAFP-----GIKCTVLDL-PHAVANLPE---------------------------- 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~----~~~~l~~~~P-----~~~~~~~Dl-p~~~~~a~~---------------------------- 190 (301)
+.-+|.-.||+||. +++.|.+..| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999996 6666777776 478999999 888888863
Q ss_pred -------CCCeEEEeCCCCC-C-CCc-chhHHH-------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 -------ADNLKYIAGDMLR-F-IPP-ANAFLF-------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~-~p~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
...|.|..+|..+ + .+. +|+|+| +++++.+..|+| ||.|+|=
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 2468999999988 4 455 999998 999999999999 8877763
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.3e-06 Score=84.16 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=66.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CCc-chhHHH-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMLRF---IPP-ANAFLF- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~D~~~~---~p~-~D~i~~- 213 (301)
...++|||+|||+|.++..+++.. ..+++.+|+ +.+++.+++ . ++++++.+|+++. .+. ||+|++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 446899999999999999999863 447999999 888887775 2 5899999998762 233 888876
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 478888999999 7866543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=66.85 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=88.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCCc--chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR---FIPP--ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~---~~p~--~D~i~ 212 (301)
.+...+|||...|-|.++++.+++. ..+++-++- |.|++.|.- ..+|+++.||..+ .+++ +|+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 4567899999999999999999985 347888887 999988873 4579999999876 4665 88776
Q ss_pred H--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHH
Q 043533 213 F--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 278 (301)
Q Consensus 213 ~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~ 278 (301)
= .+.+++++.|+| ||+++-.-- +++. .++-.|+ .....+.|+
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG---~Pg~------ryrG~d~------------~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVG---NPGK------RYRGLDL------------PKGVAERLR 266 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeC---CCCc------ccccCCh------------hHHHHHHHH
Confidence 4 899999999999 898764431 1111 0112222 345688999
Q ss_pred hCCCceeEEEec
Q 043533 279 DAVFSHYKITPI 290 (301)
Q Consensus 279 ~aGf~~~~~~~~ 290 (301)
++||.+++...-
T Consensus 267 ~vGF~~v~~~~~ 278 (287)
T COG2521 267 RVGFEVVKKVRE 278 (287)
T ss_pred hcCceeeeeehh
Confidence 999998876544
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.5e-06 Score=72.20 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=73.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------Cc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--F-I-------PP 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 207 (301)
..+.++||+||+++|.-+..+++.. |+.+++.+|. |+..+.|++ .++|+++.||+.+ + + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 5668999999999999999999886 4789999999 777777664 6899999999865 2 1 23
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
||+|++ ..+..+.+.|+| | .++|+|.++..
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~~---G-Gviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVKV---G-GVIGYDNTLWN 194 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcCC---C-eEEEEcCCCCC
Confidence 999998 788888899999 4 56777766544
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.1e-06 Score=70.39 Aligned_cols=84 Identities=11% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCCeEEEecCCccH----HHHHHHHH----CC-CCeEEEeec-hHHHhcCCC----------------------------
Q 043533 149 GLGSLVDVGGGNVS----FSRIISEA----FP-GIKCTVLDL-PHAVANLPE---------------------------- 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~----~~~~l~~~----~P-~~~~~~~Dl-p~~~~~a~~---------------------------- 190 (301)
..-+|...||++|. +++.+.+. .+ +.++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999997 44444441 22 468999999 888888862
Q ss_pred ------CCCeEEEeCCCCC-CCC-c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 ------ADNLKYIAGDMLR-FIP-P-ANAFLF-------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 ------~~ri~~~~~D~~~-~~p-~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..+|+|..+|..+ +.+ . +|+|+| +++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3679999999998 322 3 999987 999999999999 7777664
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.8e-06 Score=73.33 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=57.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
+..++ +..+ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 25 ~~~Iv-~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 25 LDKIV-EKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHH-HhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 44566 6555 6667899999999999999999875 47999999 778776653 3689999999987 56
Q ss_pred CcchhHHH
Q 043533 206 PPANAFLF 213 (301)
Q Consensus 206 p~~D~i~~ 213 (301)
+.+|+++.
T Consensus 100 ~~~d~Vva 107 (294)
T PTZ00338 100 PYFDVCVA 107 (294)
T ss_pred cccCEEEe
Confidence 55666554
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.6e-06 Score=74.24 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-c-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIP-P-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p-~-~D~i~~----- 213 (301)
..+.|||||||+|.+++--+++. ..++.++|-.++++.|.+ .+.|+++.|...+ .+| + .|+|+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999999998 668999999888887775 5679999999887 677 3 898876
Q ss_pred -----HHHHHH----HHhcccCCCCcEEE
Q 043533 214 -----KILKKR----REAIASNGERGKVI 233 (301)
Q Consensus 214 -----~iL~~~----~~aL~p~~~gg~l~ 233 (301)
.+|..+ -+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 333333 367888 77443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=72.70 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~ 213 (301)
...+|||+|||+|.++..+++. ..+++++|. +++++.|++ -++++|+.+|+.+ . ... +|+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 3589999999999999999985 468999999 888887764 3579999999864 2 112 677665
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-05 Score=62.63 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=62.9
Q ss_pred HHHhhhhhcccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc----chhH
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVS-FSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP----ANAF 211 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~----~D~i 211 (301)
+. +.+. -.+..+++|||||+|. ++..|.+. +..++++|. |..++.+++ ..+.++.+|.|+|-++ +|+|
T Consensus 8 l~-~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 8 IA-ENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HH-Hhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEE
Confidence 44 5454 2345789999999996 87778765 578999999 887777763 4578999999996332 7888
Q ss_pred HH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.. .+-..+.+.-+.. |.-++|...
T Consensus 82 ysirpp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 82 YSIRPPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred EEeCCCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 87 4444444444431 445655543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.6e-05 Score=63.24 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=78.0
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C-----
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-F----- 204 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~----- 204 (301)
.++.+. +.++ +..+..|+++|.|||.++.+++++ .++-..+.++. ++-..+..+ .+.++++.||.++ .
T Consensus 36 lA~~M~-s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMA-SVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHH-hccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 345566 7777 777889999999999999999987 45667888888 666665554 5677799999886 3
Q ss_pred CCc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 205 IPP--ANAFLF-------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 205 ~p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
.+. +|.|++ ++|+++...|++ ||.++-+..-
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 232 898887 999999999999 8888877764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.6e-05 Score=68.92 Aligned_cols=83 Identities=10% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 043533 150 LGSLVDVGGGNVS----FSRIISEAFP----GIKCTVLDL-PHAVANLPE------------------------------ 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~----~~~~l~~~~P----~~~~~~~Dl-p~~~~~a~~------------------------------ 190 (301)
.-+|...||+||. +++.+.+..+ +.++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997 4444555433 478999999 888887763
Q ss_pred -------CCCeEEEeCCCCC-CCC--c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 -------ADNLKYIAGDMLR-FIP--P-ANAFLF-------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~~p--~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..+|+|..+|..+ ++| . +|+|++ +++++++++|+| ||.|++=
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1458999999988 554 3 999998 999999999999 8866553
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.6e-06 Score=70.14 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=60.5
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKYIAGD 200 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~~~~D 200 (301)
.++ +.++ +.....++|||||.|......+-.++--+++++++ +...+.|.. ..++++..+|
T Consensus 33 ~il-~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 33 KIL-DELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHH-HHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHH-HHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 355 5555 67778999999999999998887775445999999 554443321 4678999999
Q ss_pred CCC-CC-----CcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 201 MLR-FI-----PPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 201 ~~~-~~-----p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
|.+ +. .++|+|++ .-|++....||+ |.+++-...+.+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 987 32 23777776 555677778888 77766555555443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.2e-05 Score=76.05 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL--PHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl--p~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
+...+||||||.|.++..+++.+|+..++++|. +.+...++. -.++.++.+|+.. .+|. .|.|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999999999999999999999999 333322221 3577788777632 3443 555554
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..|+.+++.|+| ||.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 899999999999 88776543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.2e-05 Score=76.55 Aligned_cols=76 Identities=17% Similarity=0.332 Sum_probs=57.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----C-Cc-chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF-----I-PP-ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~-----~-p~-~D~i~ 212 (301)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.|++ -++++|+.+|+.+. . .. +|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999875 47999999 888887775 35899999998541 1 12 67777
Q ss_pred H---------HHHHHHHHhccc
Q 043533 213 F---------KILKKRREAIAS 225 (301)
Q Consensus 213 ~---------~iL~~~~~aL~p 225 (301)
+ .+++.+.+ ++|
T Consensus 368 ~dPPr~G~~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 368 LDPPRKGCAAEVLRTIIE-LKP 388 (431)
T ss_pred ECcCCCCCCHHHHHHHHh-cCC
Confidence 6 55555443 566
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.5e-05 Score=74.47 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=76.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CcchhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---I-PPANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~---- 213 (301)
...+|||+|||+|.++..++.. ..+++++|. +.+++.|++ -++++|+.+|+.+. . ..+|+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3579999999999999999965 468999999 888877764 34799999998642 1 22787776
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
.+++.+. .++| ++++.++. ++. ....|+.. + .||+..++.
T Consensus 311 ~G~~~~~l~~l~-~~~p----~~ivyvsc---~p~--------TlaRDl~~----------------L---~gy~l~~~~ 355 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAP----KFILYSSC---NAQ--------TMAKDIAE----------------L---SGYQIERVQ 355 (374)
T ss_pred CCCcHHHHHHHH-hcCC----CeEEEEEe---CHH--------HHHHHHHH----------------h---cCceEEEEE
Confidence 5555554 3566 34555443 111 12234332 2 489999988
Q ss_pred ecC--CceeEEEE
Q 043533 289 PIF--GMKSLIEV 299 (301)
Q Consensus 289 ~~~--~~~~~i~a 299 (301)
++. ..++-||.
T Consensus 356 ~~DmFPqT~HvE~ 368 (374)
T TIGR02085 356 LFDMFPHTSHYEV 368 (374)
T ss_pred EeccCCCCCcEEE
Confidence 874 34566664
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.8e-05 Score=65.85 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=58.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------Cc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE---------ADNLKYIAGDMLRFI------PP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~---------~~ri~~~~~D~~~~~------p~-~D~ 210 (301)
.....+||+||||+|..++.+++..+..++++-|.+++++..+. ..++++...|+-++. +. ||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45578999999999999999999977889999999767665442 467888888876522 22 676
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
|+. .+++.+.+.|+| +|.+++.....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccchHHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 665 888999999999 67666665544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=66.61 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--C-c-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I--P-P-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~--p-~-~D~i~~ 213 (301)
...+|||++||+|.++.+++.+... +++.+|. +.+++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3579999999999999999999753 8999999 777766553 35789999998541 1 1 2 677776
Q ss_pred ----------HHHHHHHH--hcccCCCCcEEEEEeeee
Q 043533 214 ----------KILKKRRE--AIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ----------~iL~~~~~--aL~p~~~gg~l~i~e~~~ 239 (301)
.++..+.+ .+++ +.++|+|...
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 55555543 3555 5688888644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.8e-05 Score=66.34 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=61.3
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F 204 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~ 204 (301)
+++.++ +..+ ......||+||.|||.++..|+++ +.+++++++ |.++++..+ ....+++.||+++ +
T Consensus 46 v~~~I~-~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 46 VIDQIV-EKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHH-hccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 345566 6656 777889999999999999999998 468999998 887776654 4789999999999 8
Q ss_pred CCcchhHHH
Q 043533 205 IPPANAFLF 213 (301)
Q Consensus 205 ~p~~D~i~~ 213 (301)
+|-+|.++.
T Consensus 121 ~P~fd~cVs 129 (315)
T KOG0820|consen 121 LPRFDGCVS 129 (315)
T ss_pred Ccccceeec
Confidence 888887665
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=62.51 Aligned_cols=115 Identities=17% Similarity=0.310 Sum_probs=76.2
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc---chhHHH--------
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP---ANAFLF-------- 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~---~D~i~~-------- 213 (301)
|.||||-+|.+.+.|++.+.--+++..|+ +.-++.|++ .++|++.-+|-+++++. .|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 68999999999999999998889999999 666666653 68999999998886543 677666
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec--
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI-- 290 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-- 290 (301)
.||.+....++. ..++++ - . ......+++||.+.||.++.-.-+
T Consensus 81 ~~ILe~~~~~~~~---~~~lIL-q--------------------------P---~~~~~~LR~~L~~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 81 IEILEAGPEKLSS---AKRLIL-Q--------------------------P---NTHAYELRRWLYENGFEIIDEDLVEE 127 (205)
T ss_dssp HHHHHHTGGGGTT-----EEEE-E--------------------------E---SS-HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHhhHHHhcc---CCeEEE-e--------------------------C---CCChHHHHHHHHHCCCEEEEeEEEeE
Confidence 444444333332 112221 1 1 114566799999999999976655
Q ss_pred CC-ceeEEEEe
Q 043533 291 FG-MKSLIEVY 300 (301)
Q Consensus 291 ~~-~~~~i~a~ 300 (301)
.+ ++.+|.+.
T Consensus 128 ~~~~YeIi~~~ 138 (205)
T PF04816_consen 128 NGRFYEIIVAE 138 (205)
T ss_dssp TTEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 23 67777765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.3e-05 Score=68.44 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------C----CCeEEEeCCCCCC-----C-
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------------A----DNLKYIAGDMLRF-----I- 205 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------------~----~ri~~~~~D~~~~-----~- 205 (301)
...+|||+|||-|.=+.--.+..+ -..+++|+ +..++.|++ . -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 568999999998886666666543 37999999 677776653 1 2356788887742 1
Q ss_pred -C--cchhHHH---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 206 -P--PANAFLF---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 206 -p--~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+ .||+|-+ .+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 2 2888776 799999999999 88777653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=60.85 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=87.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCC--eEEEeCCCCC-CCCc--chhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADN--LKYIAGDMLR-FIPP--ANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~r--i~~~~~D~~~-~~p~--~D~i~~------ 213 (301)
..+..++|||||.|.....|..+.- -+.+.+|. -.|++.++. .+. .+...+|-.. ++.+ +|+|+.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 4478999999999999999998863 27888998 788888876 233 3445566544 5655 899987
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCc-----cC-CHHHHHHHHHhCCC
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGK-----ER-TESEWAKLFFDAVF 282 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~-----~r-t~~e~~~ll~~aGf 282 (301)
.-+.+|+.+||| +| ++|..+.-.+.-.+ .+...-+.-+-.-+|- +. ...++-.+|..|||
T Consensus 150 ~NdLPg~m~~ck~~lKP---Dg-~FiasmlggdTLyE-----LR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKP---DG-LFIASMLGGDTLYE-----LRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hccCchHHHHHHHhcCC---Cc-cchhHHhccccHHH-----HHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCc
Confidence 888999999999 56 55555544443322 2222222211112221 11 23578899999999
Q ss_pred ceeEE
Q 043533 283 SHYKI 287 (301)
Q Consensus 283 ~~~~~ 287 (301)
....+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 97765
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.7e-05 Score=63.16 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=63.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEe
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIK---------CTVLDL-PHAVANLPE-------ADNLKYIA 198 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~---------~~~~Dl-p~~~~~a~~-------~~ri~~~~ 198 (301)
..++ .... +.+...|+|-=||+|.++++.+...++.. +++.|+ +.+++.++. ...|.+..
T Consensus 18 ~~ll-~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 18 AALL-NLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHH-HHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHH-HHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3355 5555 56678999999999999999888777766 999999 888877764 46789999
Q ss_pred CCCCC-CCC-c-chhHHH-------------------HHHHHHHHhccc
Q 043533 199 GDMLR-FIP-P-ANAFLF-------------------KILKKRREAIAS 225 (301)
Q Consensus 199 ~D~~~-~~p-~-~D~i~~-------------------~iL~~~~~aL~p 225 (301)
.|+.+ +++ . +|+|++ ++++++.+.+++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99987 633 3 787776 777888888887
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=65.48 Aligned_cols=84 Identities=17% Similarity=0.360 Sum_probs=66.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CCc-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRF---IPP- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~---~p~- 207 (301)
..+.+++|-+|||.|--+.++++ ||. -+++.+|+ |.|++.++. .+|++++..|.++= -.+
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35678999999999999999875 684 57999999 999998872 68999999998762 222
Q ss_pred chhHHH----------------HHHHHHHHhcccCCCCcEEEE
Q 043533 208 ANAFLF----------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 208 ~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
||+++. ...+-++++|++ +|.+++
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~Vv 405 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVV 405 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEE
Confidence 666654 777888899998 675554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.6e-05 Score=69.07 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CcchhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI---PPANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~---p~~D~i~~------ 213 (301)
..+|||++||+|.+++.++.+.+..+++++|+ |..++.+++ -+++++..+|+..-+ +.||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~ 137 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGSP 137 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCCc
Confidence 46899999999999999999887668999999 888877764 245678888985522 23899988
Q ss_pred -HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..|..+.+.+++ ||.++|.
T Consensus 138 ~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 138 APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred HHHHHHHHHHhcC---CCEEEEE
Confidence 788887888899 7877777
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.44 E-value=8.5e-05 Score=63.06 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=61.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-Cc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI-PP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~-p~-~D~i~~--- 213 (301)
..+..+|+|+-||.|.++..+++..+..+++.+|+ |+.++.+++ .++|..+.+|..+-. .. +|-|+|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45578999999999999999999888889999999 887776653 678999999987633 33 898888
Q ss_pred ----HHHHHHHHhccc
Q 043533 214 ----KILKKRREAIAS 225 (301)
Q Consensus 214 ----~iL~~~~~aL~p 225 (301)
..|..+...+++
T Consensus 179 ~~~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 ESSLEFLDAALSLLKE 194 (200)
T ss_dssp SSGGGGHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHhcC
Confidence 888999999998
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00039 Score=59.04 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=77.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc-----chhHHH-----------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP-----ANAFLF----------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~-----~D~i~~----------- 213 (301)
-++|||||=+....+.- ++-..++-+||... .+.| ...||++ |+|. ||+|.+
T Consensus 53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------~~~I--~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------HPGI--LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccc---cCceeeEEeecCCC------CCCc--eeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 59999999866654442 45567999998442 3344 4789999 8872 999887
Q ss_pred ---HHHHHHHHhcccCCCCcE-----EEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 ---KILKKRREAIASNGERGK-----VIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~-----l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
++|+++++.|+| +|. ++|+-+... ..|.+..+.+.|.++++..||..+
T Consensus 122 ~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred HHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEEE
Confidence 999999999999 676 444422110 135566688999999999999999
Q ss_pred EEEecC
Q 043533 286 KITPIF 291 (301)
Q Consensus 286 ~~~~~~ 291 (301)
+.+...
T Consensus 178 ~~~~~~ 183 (219)
T PF11968_consen 178 KYKKSK 183 (219)
T ss_pred EEEecC
Confidence 887664
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00031 Score=61.85 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=72.9
Q ss_pred HHHHHhhcccccc---hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE
Q 043533 122 RFNEAMASDSEIM---TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYI 197 (301)
Q Consensus 122 ~f~~am~~~~~~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~ 197 (301)
.|.+.|..++... .+.+. ..++ ..+....++|+|||.|.+... +|.+..+++|+ ...+..++..+.....
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~-qfl~-~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~ 90 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVR-QFLD-SQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVC 90 (293)
T ss_pred HHHHhhhhccccccCccHHHH-HHHh-ccCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceee
Confidence 5555655543321 12222 3333 234467899999999987653 58999999999 6777777754333556
Q ss_pred eCCCCC-CCCc--chhHHH--------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 198 AGDMLR-FIPP--ANAFLF--------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 198 ~~D~~~-~~p~--~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|+.+ |.++ +|..+. ++++++.+.++| ||..+|.
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrp---gg~~lvy 142 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRP---GGNALVY 142 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcC---CCceEEE
Confidence 689988 7765 776665 999999999999 8886664
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00085 Score=56.80 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~ 203 (301)
..+. +.+. -+.+..+|+|+|+-.|.++..++++- ++.+++++|+-++-.. ++|.++.+|++.
T Consensus 34 ~el~-~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~ 96 (205)
T COG0293 34 LELN-EKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITD 96 (205)
T ss_pred HHHH-HhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccC
Confidence 3455 5553 46778999999999999999998875 4567999998555433 448889999876
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0001 Score=68.29 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=42.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
.+|||++||+|.++..+++... +++++|. +++++.+++ -++++|+.+|+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 4799999999999999998863 8999999 888887775 247889998885
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0008 Score=61.23 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=71.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC--c-chhHHH-------HHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIP--P-ANAFLF-------KILK 217 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p--~-~D~i~~-------~iL~ 217 (301)
....++|||||++|.++..++++ +.+++++|...+-+.....++|+...+|.+...| . +|++++ ++++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~P~rva~ 287 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEKPARVAE 287 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccCHHHHHH
Confidence 45789999999999999999998 5699999987777777778999999999887433 3 777776 8888
Q ss_pred HHHHhcccCCCC-cEEEEEeeeeCCCc
Q 043533 218 KRREAIASNGER-GKVIIIDIVINAEE 243 (301)
Q Consensus 218 ~~~~aL~p~~~g-g~l~i~e~~~~~~~ 243 (301)
-+.+.+.. | .+-.|+..-+|-..
T Consensus 288 lm~~Wl~~---g~cr~aIfnLKlpmk~ 311 (357)
T PRK11760 288 LMAQWLVN---GWCREAIFNLKLPMKK 311 (357)
T ss_pred HHHHHHhc---CcccEEEEEEEcCCCC
Confidence 88888876 3 45666666665543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00059 Score=61.52 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=54.5
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR 203 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~ 203 (301)
.++++ +.+. ......+||.=+|.|..+..++++.|+.+++++|. |.+++.+++ .+|++++.++|.+
T Consensus 9 l~Evl-~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVV-EGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHH-HhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 35566 6665 55667999999999999999999988899999999 888887764 4689999988764
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00014 Score=60.95 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=63.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHhcCCC---CCCeEEEeCCCCC-CCCc-chhHHH-------HH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH---AVANLPE---ADNLKYIAGDMLR-FIPP-ANAFLF-------KI 215 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~---~~~~a~~---~~ri~~~~~D~~~-~~p~-~D~i~~-------~i 215 (301)
+++|||.|.|.=++-|+=.+|+++++.+|. .. .+..+.. -++++++.+...+ ..+. ||+|++ .+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l 130 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL 130 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence 899999999999999999999999999997 22 2222221 5689999998876 3444 999998 77
Q ss_pred HHHHHHhcccCCCCcEEEEEe
Q 043533 216 LKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e 236 (301)
+.-+...+++ ||+++..-
T Consensus 131 ~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 131 LELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp HHHHGGGEEE---EEEEEEEE
T ss_pred HHHHHHhcCC---CCEEEEEc
Confidence 8888888899 88877764
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00036 Score=62.40 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=60.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhcCCC--------CC----CeEEEeCCCCC-C----C----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH-AVANLPE--------AD----NLKYIAGDMLR-F----I---- 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~-~~~~a~~--------~~----ri~~~~~D~~~-~----~---- 205 (301)
+....++|+|||-|.=++.--++.-+ ..+++|+.+ .+..|+. .. .+.|+.+|-+. . +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 56788999999999888777766432 699999944 4666653 12 36788998764 1 2
Q ss_pred CcchhHHH---------------HHHHHHHHhcccCCCCcEEE
Q 043533 206 PPANAFLF---------------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 206 p~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~ 233 (301)
|.+|+|-+ .+|+++.+.|+| ||.+|
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI 234 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI 234 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence 23888776 899999999999 77554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00053 Score=60.23 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=53.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~ 207 (301)
.+.++ +..+ ......|++||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ ++|.
T Consensus 19 ~~kIv-~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIV-EAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHH-HhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 45566 6665 56678999999999999999999965 4777777 555554443 6899999999998 7773
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00013 Score=67.84 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=42.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
.+|||++||+|.++..+++... +++++|. +.+++.+++ -++++|+.+|+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 5799999999999999998863 8999999 888877764 347889988884
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.28 E-value=9.3e-05 Score=61.81 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHA 184 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~ 184 (301)
+..++|||||++|.++..++++. +..+++++|+..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999987 7889999999443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00082 Score=55.65 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=66.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCcchhHHH---------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPPANAFLF--------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~--------- 213 (301)
..+.|+|.|+|.++.-.+++ .-+++.++. |...+.|.+ ..+++++.||+.+ .+..+|+|++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58899999999999887776 458999999 777776665 5789999999988 7866999988
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++.+.+-|+. +++++=.+.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHH
Confidence 777888888887 677765443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0002 Score=56.78 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR 203 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~ 203 (301)
++++.|+|||.|.+.++ -.+|+. .++++|+ |+.++.+.. .-++.+.++|+.+
T Consensus 49 gkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild 107 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD 107 (185)
T ss_pred CcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence 58999999999999944 445654 5999999 999988875 2345666677665
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00043 Score=57.94 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=60.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCc-c------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRFIPP-A------ 208 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~~p~-~------ 208 (301)
...+.|||||-|.++..|+..||+--++++++ -.|.+..++ -.++.+...+.+.-+|. +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 46799999999999999999999999999998 444332221 34566665554443332 1
Q ss_pred -hhHHH-----------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 209 -NAFLF-----------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 209 -D~i~~-----------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
+.++. .++.+..-.|++ ||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence 11111 889999999999 8988876543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00058 Score=60.62 Aligned_cols=65 Identities=18% Similarity=0.383 Sum_probs=52.9
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR 203 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~ 203 (301)
.++.++ +.++ ..+...|+|||+|.|.++..|++.. -+++++|. +..++..++ .+|++++.+|+++
T Consensus 18 ~~~~Iv-~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 18 IADKIV-DALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHH-HHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred HHHHHH-HhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 355677 7776 6678999999999999999999997 68999998 666665543 6899999999987
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00038 Score=65.87 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=57.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEeCCC--CC-CCCc--chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVL---DL-PHAVANLPEADNLKYIAGDM--LR-FIPP--ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~---Dl-p~~~~~a~~~~ri~~~~~D~--~~-~~p~--~D~i~~----- 213 (301)
...+++||||||+|.++..|+.++ +..+.+ |- +..+..|.+ -.|-.+-+-+ .. |+|+ ||++.+
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 345789999999999999999884 333222 22 222222221 1133232222 12 7886 999998
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|-++-++|+| ||.+++..+-..
T Consensus 193 ~W~~~~g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhcccceeehhhhhhcc---CceEEecCCccc
Confidence 788999999999 898887766444
|
; GO: 0008168 methyltransferase activity |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00042 Score=61.55 Aligned_cols=82 Identities=17% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCeEEEecCCc-cHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C--CCcchhHHH--
Q 043533 150 LGSLVDVGGGN-VSFSRIISEAF-PGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR-F--IPPANAFLF-- 213 (301)
Q Consensus 150 ~~~vlDvGgG~-G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~-~--~p~~D~i~~-- 213 (301)
+.+|+=||+|. -..++.|++++ ++..++++|. |+.++.+++ +.+++|+.+|... + +..||+|++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999995 45666666654 7889999999 887777653 6899999999875 3 345898887
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEE
Q 043533 214 ----------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++|.++.+.|+| |..+++
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~---ga~l~~ 228 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAP---GARLVV 228 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-T---TSEEEE
T ss_pred hcccccchHHHHHHHHHhhCCC---CcEEEE
Confidence 999999999999 665444
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00087 Score=55.23 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=45.5
Q ss_pred CCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-c-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP-P-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p-~-~D~i~~ 213 (301)
..-+++||||+|..+..|++. .|+......|+ |++++.-.+ .-++..+..|+...+. + .|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEE
Confidence 678999999999999998876 57888999999 777765332 3345666777765322 2 555444
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0015 Score=62.65 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=65.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~-~D~i~~- 213 (301)
.....+|||++++.|.=+..++.... ...++..|+ +.-+..+++ -.+|.+...|... .+|. ||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 45678999999999999999998864 458999998 554444432 3567777778654 2444 787775
Q ss_pred --------------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --------------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --------------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+||.++.+.|+| ||+|+...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEC
Confidence 899999999999 88775444
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0061 Score=50.89 Aligned_cols=127 Identities=17% Similarity=0.063 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------C--CCCeEEEeCCCCC-CCCc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDLPHAVANLP-----------E--ADNLKYIAGDMLR-FIPP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dlp~~~~~a~-----------~--~~ri~~~~~D~~~-~~p~-~D~ 210 (301)
+....+|+|+=.|.|.++..+... .|.-.+..+--.+...-+. + ..+++.+..+... +.|+ .|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 777899999999999999998875 3444444332222222111 1 2344444444443 2232 343
Q ss_pred HHH------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 211 FLF------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 211 i~~------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
++. ++.+.++++||| ||.++|.|+.....+.. .|-..++ -++..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~---------~dt~~~~-----ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGL---------SDTITLH-----RIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCCh---------hhhhhhc-----ccChHH
Confidence 332 899999999999 88888888765543321 1111111 235667
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
.++..+++||+...-..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 788899999998754433
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0013 Score=52.44 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=42.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
+++|||||.|.++..+++.+|..+++++|. |.+.+.+++ .++++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 589999999999999999999999999999 777776654 245777776654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.027 Score=49.94 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=83.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-H-------HHhcCC---C---------------------------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLP-H-------AVANLP---E--------------------------- 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp-~-------~~~~a~---~--------------------------- 190 (301)
+..+||-=|||.|.++-+++++ +-.+.+.+.. . ++.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999999 4456666652 1 222211 0
Q ss_pred ---------CCCeEEEeCCCCC--CCC---c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc
Q 043533 191 ---------ADNLKYIAGDMLR--FIP---P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEE 244 (301)
Q Consensus 191 ---------~~ri~~~~~D~~~--~~p---~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~ 244 (301)
.++++...|||.+ +-+ . +|+|+. .-|+.|++.||| ||.++=+-+.+-...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~~- 209 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKP---GGYWINFGPLLYHFE- 209 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhcc---CCEEEecCCccccCC-
Confidence 3478999999987 333 2 887765 889999999999 885543333322111
Q ss_pred chhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 245 EHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 245 ~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
+.. ......-+.+.+|++++.++.||++++...
T Consensus 210 -----------~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 -----------PMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -----------CCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 111 001122578999999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=52.61 Aligned_cols=85 Identities=20% Similarity=0.347 Sum_probs=62.8
Q ss_pred CCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC----------------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAF--------------------PGIKCTVLDL---PHAVANLPE---------------- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~--------------------P~~~~~~~Dl---p~~~~~a~~---------------- 190 (301)
..+||-||||.|.=..+++..+ |.+.++++|+ ..|+.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998666666555 3368999998 345443221
Q ss_pred -------CCCeEEEeCCCCC-CC---------CcchhHHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 191 -------ADNLKYIAGDMLR-FI---------PPANAFLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~~---------p~~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.=+++|...|+.. .. |..++|.+ ++|.++...++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 1247899999987 32 12577776 999999999999 889999985
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0083 Score=51.12 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-c--chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-P--ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-~--~D~i~~ 213 (301)
...+.||||-++.+.+.|.+.+|..+++..|. +.-++.|.. .+||+...+|-+.++. + .|++++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence 44599999999999999999999999999998 544444432 6899999999987643 2 676665
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00043 Score=60.87 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCC------C----------------------------CC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLP------E----------------------------AD 192 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~------~----------------------------~~ 192 (301)
+..++||||+|.-.+- ++.+.+.. +++..|. +.-.+..+ . ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3568999999985552 33333333 3777787 33222111 0 12
Q ss_pred CeE-EEeCCCCC--CC------Cc-chhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh
Q 043533 193 NLK-YIAGDMLR--FI------PP-ANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE 247 (301)
Q Consensus 193 ri~-~~~~D~~~--~~------p~-~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~ 247 (301)
.|+ ++.+|.++ |+ |. +|++++ +.++++.+.||| ||.|++... +......
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~-l~~t~Y~-- 207 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGV-LGSTYYM-- 207 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEE-SS-SEEE--
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEE-cCceeEE--
Confidence 244 67789877 22 34 898775 999999999999 888888765 3222211
Q ss_pred hhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 248 LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 248 ~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
. .-..+ ..-..+++.+++.|+++||.+.+...
T Consensus 208 v----G~~~F------~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 V----GGHKF------PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E----TTEEE------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred E----CCEec------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0 00011 11235899999999999999998875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00096 Score=57.11 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHhcCCC---CCCeEEEeCCCCC-C-CCc-chhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH---AVANLPE---ADNLKYIAGDMLR-F-IPP-ANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~---~~~~a~~---~~ri~~~~~D~~~-~-~p~-~D~i~~------ 213 (301)
..+++|||.|.|.=++-++=.+|+++++.+|. .. -++.+.. -++++++.+.+.+ . .+. ||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L 147 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASL 147 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccch
Confidence 58999999999999999999999999999997 22 2233222 5789999988865 2 334 999998
Q ss_pred -HHHHHHHHhcccCCCCcEEE
Q 043533 214 -KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~ 233 (301)
.++.-+...+++ ||+++
T Consensus 148 ~~l~e~~~pllk~---~g~~~ 165 (215)
T COG0357 148 NVLLELCLPLLKV---GGGFL 165 (215)
T ss_pred HHHHHHHHHhccc---CCcch
Confidence 444444555566 56543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00047 Score=57.93 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=76.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCCCCcchhHHH-----------HH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG-DMLRFIPPANAFLF-----------KI 215 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~-D~~~~~p~~D~i~~-----------~i 215 (301)
...++||+|.|.|..+..++..+.+ +..-++ ..|..+.++ .+..+... ++.+.--.+|+|.+ ++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcChHHH
Confidence 3579999999999999998877654 333344 345544443 22222221 22211112899988 99
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhhhhhhhhchhhccccCCccCC--HHHHHHHHHhCCCceeEEEecC
Q 043533 216 LKKRREAIASNGERGKVIIIDIVINAEEEEH-ELTETKFLFDIVMSVNATGKERT--ESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~~~~~~~d~~~~~~~~g~~rt--~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
|+-++.+|+|. +|++++. .++|-..... ...-....-| +++ ..+|+.+. .+.+.++|+++||.+......|
T Consensus 189 L~Di~~vl~ps--ngrviva-LVLP~~hYVE~N~~g~~~rPd-n~L-e~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 189 LEDIHLVLAPS--NGRVIVA-LVLPYMHYVETNTSGLPLRPD-NLL-ENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHHHHhccC--CCcEEEE-EEecccceeecCCCCCcCCch-HHH-HhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 99999999993 6877653 3333222110 0000000011 111 23455332 2346789999999998877664
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00068 Score=56.87 Aligned_cols=88 Identities=14% Similarity=0.227 Sum_probs=64.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---Cc-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I---PP-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~---p~-~D~i~~ 213 (301)
...++||+=||+|.++.+.+.+. ..+++.+|. +..+..+++ .+++.++.+|.+.- . .. ||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999999886 348999999 777666654 45789999996541 1 23 888887
Q ss_pred -----------HHHHHHH--HhcccCCCCcEEEEEeeeeCC
Q 043533 214 -----------KILKKRR--EAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 -----------~iL~~~~--~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.+|..+. ..|++ +.++|+|.....
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~~ 157 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNE----DGLIIIEHSKKE 157 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEE----EEEEEEEEETTS
T ss_pred CCCcccchHHHHHHHHHHHCCCCCC----CEEEEEEecCCC
Confidence 4666665 56677 668899986653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0012 Score=52.79 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=41.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDML 202 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~ 202 (301)
.+..+|+|+|||.|.++..|+.. .|+++++++|. +..++.+.. ..++.+..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 56789999999999999999982 38899999998 665555543 245666665553
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0051 Score=51.01 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=32.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHA 184 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~ 184 (301)
+.+..+|||+||-.|.++....++. |+..+.++|+-.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~ 105 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI 105 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence 4667899999999999999988875 9999999998444
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0035 Score=63.41 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=56.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH----C--------------------------------------C
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA----F--------------------------------------P 172 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~--------------------------------------P 172 (301)
+..++ ....| ..+...++|-.||+|.++++.+.. . +
T Consensus 178 Aaa~l-~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 178 AAAIL-LRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHH-HHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 44556 55553 144679999999999999997653 1 1
Q ss_pred CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----cchhHHH
Q 043533 173 GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP----PANAFLF 213 (301)
Q Consensus 173 ~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~ 213 (301)
..+++++|+ +.+++.|+. .++|.|..+|+.+ +.+ .+|+|++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt 309 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS 309 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence 236899999 888888775 4679999999977 432 2788877
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=58.87 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=60.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C-CC--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-------FPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR-F-IP-- 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-------~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~-~-~p-- 206 (301)
.....+|+|-+||+|.++.++.+. .+..++.++|+ +.++..+.. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455678999999999999998874 47889999999 666554431 3334577788775 2 32
Q ss_pred c-chhHHH--------------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P-ANAFLF--------------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~-~D~i~~--------------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. ||+|++ ..+.++.+.|++ ||++.++=
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 2 777776 577888899998 78765543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.001 Score=61.97 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=70.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC----C--c-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI----P--P-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~----p--~-~D~i 211 (301)
..+++|||+=|=||.++...+... ..++|.+|+ ..+++-|++ .+++.|+.+|.|+-+ . . ||+|
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 347899999999999999988774 238999999 677777764 577999999998732 2 2 9999
Q ss_pred HH--------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF--------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++ .++..+.+.|+| ||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 98 889999999999 887777664
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0064 Score=53.35 Aligned_cols=114 Identities=16% Similarity=0.240 Sum_probs=83.9
Q ss_pred HHHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCC----C-
Q 043533 122 RFNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLP----E- 190 (301)
Q Consensus 122 ~f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~----~- 190 (301)
.|..+|...++.. +.-++ ..++ ...+.+||+-|.|+|.++..+++. .|.-++.-+|. ..-.+.|. +
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~-~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMIL-SMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred HhhhhccCcceEEecccHHHHH-HHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh
Confidence 4666676666532 34466 7777 788899999999999999999997 58888999998 33333333 2
Q ss_pred --CCCeEEEeCCCCC-CCC--c--chhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 191 --ADNLKYIAGDMLR-FIP--P--ANAFLF------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 191 --~~ri~~~~~D~~~-~~p--~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
++++++...|... .++ + +|.|++ ..+-.++.+|+.. ||++.-+.+.+.
T Consensus 154 gi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~--g~r~csFSPCIE 214 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDE--GGRLCSFSPCIE 214 (314)
T ss_pred CCCcceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhc--CceEEeccHHHH
Confidence 7899999999987 444 3 899998 7777888888872 567766665543
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0036 Score=55.82 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEeCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIK-CTVLDL-PHAVANLPE-----ADNLKYIAGDML 202 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~ 202 (301)
.+++ +.+. ......+||.==|.|..+..+++++|+.. .+++|. |.+++.|++ .+|++++.++|.
T Consensus 13 ~E~i-~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 13 NEVV-ELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHH-Hhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4556 6665 55568999999999999999999999765 999999 999998875 578888887764
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.003 Score=58.87 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=67.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCc-chhHHH-----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---IPP-ANAFLF----- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~p~-~D~i~~----- 213 (301)
-+|||+-||+|..+++.+++.++ -+++..|+ |+.++.+++ ..++++..+|+..- ... ||+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs 125 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFGT 125 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCCC
Confidence 48999999999999999998655 47999999 888877764 24588888998752 123 899888
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..+..+.+.+++ ||.|+|.-
T Consensus 126 ~~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 126 PAPFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred cHHHHHHHHHhccc---CCEEEEEe
Confidence 899999999998 88888873
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0036 Score=55.97 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CC--CeEEEeCCCCC---CCCcchhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE----AD--NLKYIAGDMLR---FIPPANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~----~~--ri~~~~~D~~~---~~p~~D~i~~----- 213 (301)
+.+|||+|+|+|..+-++...+|.+ +++++|. +.+++.++. .. +......++.. +++..|+|++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 5799999999999998888888855 5889998 777775553 11 11101112221 2333687776
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.+++++.+.+. +.|+|+|.-.+.
T Consensus 114 EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~ 144 (274)
T PF09243_consen 114 ELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA 144 (274)
T ss_pred cCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence 66666666544 488899975544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0019 Score=58.52 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-h---HHHhcCCC---CCCeEEEeCCCCC---CCCc---chhHHH--
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIK-CTVLDL-P---HAVANLPE---ADNLKYIAGDMLR---FIPP---ANAFLF-- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~-~~~~Dl-p---~~~~~a~~---~~ri~~~~~D~~~---~~p~---~D~i~~-- 213 (301)
+++|||||-|.|.-+-++-.-+|+++ +++++. | .|++.... ..+-..-..|+.. ++|. |++++.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 57899999999999999999999986 666666 3 23222221 1222223344433 4554 555554
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
-.++++...+.| ||.++|+|.--
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGt 228 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGT 228 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCC
Confidence 378888999999 99999999643
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0015 Score=53.56 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=41.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR 203 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~ 203 (301)
+.|+|+-||.|..++.+++.+. +++.+|+ |..++.++. .+||.|+.+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~ 59 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE 59 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH
Confidence 4799999999999999999974 5999999 777776663 6799999999974
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0075 Score=51.67 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=69.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCC--------Cc-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLP-------EADNLKYIAGDMLRFI--------PP-A 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~-------~~~ri~~~~~D~~~~~--------p~-~ 208 (301)
.-++++++|||.=||.-+.+.+.+-| +-+++.+|. ++..+.+. -...|+++.|+..+.+ +. |
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 45689999999999999999999987 468999998 33333332 2688999999887632 12 8
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
|.+++ ..+.++.+.+++ |+++++|.++...
T Consensus 151 DfaFvDadK~nY~~y~e~~l~Llr~----GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDADKDNYSNYYERLLRLLRV----GGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEccchHHHHHHHHHHHhhccc----ccEEEEeccccCC
Confidence 88887 778888899999 5577777755543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.00067 Score=51.30 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=33.6
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC---CC--cchhHHH-----
Q 043533 154 VDVGGGNVSFSRIISEAFPGI---KCTVLDL-P---HAVANLPE---ADNLKYIAGDMLRF---IP--PANAFLF----- 213 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~---~~~~~Dl-p---~~~~~a~~---~~ri~~~~~D~~~~---~p--~~D~i~~----- 213 (301)
|+||+..|..+..+++..+.. +++++|. + .+.+.+++ .++++++.+|..+- ++ .+|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 689999999999988876544 6899999 4 33334333 57899999998642 33 2777776
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.-|+.+.+.|+| ||.+++.|
T Consensus 81 ~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 778888889999 66555443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0071 Score=55.10 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=58.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHHhcCCC------CCCeEE--EeCCCCCC---CC-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAF----PGIKCTVLDL-PHAVANLPE------ADNLKY--IAGDMLRF---IP----- 206 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~----P~~~~~~~Dl-p~~~~~a~~------~~ri~~--~~~D~~~~---~p----- 206 (301)
+....|+|+|||.|.-...|+++. ...+.+.+|+ .+.++.+.. .+.+++ +.||+.++ +|
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 345589999999999777666654 3567999999 445544332 355655 67888653 21
Q ss_pred c-chhHHH--------------HHHHHHHH-hcccCCCCcEEEE
Q 043533 207 P-ANAFLF--------------KILKKRRE-AIASNGERGKVII 234 (301)
Q Consensus 207 ~-~D~i~~--------------~iL~~~~~-aL~p~~~gg~l~i 234 (301)
. ..+++. .+|+++++ .|+| |+.++|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 1 445444 99999999 9999 777666
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.017 Score=49.12 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
..++++||.||=|.|.....+.++.|..+.|+---|+|.++.+. .++|....|-+.+ .+|+ ||-|+-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 47789999999999999999999999888777666999998885 5778777775543 4664 665543
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
...+.+.+.||| +|.+-.+.-...+
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP---~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKP---EGVFSYFNGLGAD 211 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCC---CceEEEecCcccc
Confidence 777888999999 7866665544333
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0023 Score=57.38 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=65.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC-----C-cchhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI-----P-PANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~-----p-~~D~i~ 212 (301)
...++|||+=|=||.++...+... ..+++.+|. ..+++.+++ .++++|+.+|+|+.+ . .||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 456899999999999999877543 457999999 677776664 478999999998622 1 299999
Q ss_pred H-----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 213 F-----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 213 ~-----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+ ++++.+.+.|+| ||.|+.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 8 889999999999 776655443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.25 Score=41.77 Aligned_cols=132 Identities=9% Similarity=0.043 Sum_probs=91.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCCC------cchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-P----HAVANLPEADNLKYIAGDMLRFIP------PANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p----~~~~~a~~~~ri~~~~~D~~~~~p------~~D~i~~-- 213 (301)
+.+..+||=+|..+|.....+..-.++-.+.+++. | +.++.+.+.+||--+-+|+..|.. ..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 78889999999999999999999888777888887 3 456666667888777889876531 2688776
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
-+..++..-|++ ||.+++.=-...-+.+.++ ... ..+-.+-|++.||++.+
T Consensus 154 AQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp----~~v---------------f~~ev~kL~~~~f~i~e 211 (231)
T COG1889 154 AQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADP----EEV---------------FKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCH----HHH---------------HHHHHHHHHhcCceeeE
Confidence 566778888998 7766654333322222110 011 11224567888999999
Q ss_pred EEecC---CceeEEEEe
Q 043533 287 ITPIF---GMKSLIEVY 300 (301)
Q Consensus 287 ~~~~~---~~~~~i~a~ 300 (301)
+..+. -.+.+|.++
T Consensus 212 ~~~LePye~DH~~i~~~ 228 (231)
T COG1889 212 VVDLEPYEKDHALIVAK 228 (231)
T ss_pred EeccCCcccceEEEEEe
Confidence 88873 357777765
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.012 Score=53.91 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=73.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--FI-PPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~~-p~~D~i~~--- 213 (301)
..+.+|||.=+|.|.+++.++++..- +++.+|+ |+.++.+++ .++|+.+.||..+ +. +.+|-|+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34799999999999999999988643 3999999 888877664 5679999999987 33 44999998
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
+.+..+.+.+++ ||.+..++..-.+
T Consensus 266 ~~a~~fl~~A~~~~k~---~g~iHyy~~~~e~ 294 (341)
T COG2520 266 KSAHEFLPLALELLKD---GGIIHYYEFVPED 294 (341)
T ss_pred CcchhhHHHHHHHhhc---CcEEEEEeccchh
Confidence 799999999999 7877777765443
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.025 Score=51.19 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=49.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDML 202 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~ 202 (301)
..+++ +.+. ..+.+.+||.=-|.|..+.+++++.|+.+++++|. |.+++.+++ .+|+.++.++|-
T Consensus 9 l~Evl-~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVL-EALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHH-HHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHH-HhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 45567 6666 66778999999999999999999999999999999 999877764 689999998875
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.05 Score=49.72 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=67.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeC-CCCC-CCCc--chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAG-DMLR-FIPP--ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~-D~~~-~~p~--~D~i~~-- 213 (301)
...+..|+|==||||.++++..-- ++++++.|+ ..|+..++. -+...+..+ |+.+ |+++ +|.|..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 345679999999999999998755 789999999 778888875 134444555 8877 7876 888776
Q ss_pred ------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++|..++++|++ ||++.+.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 899999999999 887665543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.033 Score=51.57 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=57.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eE
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGI---------------------------------------KC 176 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~---------------------------------------~~ 176 (301)
..++ ..-. |.+...++|==||+|.++++.+-..+++ .+
T Consensus 181 aAil-~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 181 AAIL-LLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHH-HHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 4455 4445 5555899999999999999988877532 26
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--cchhHHH
Q 043533 177 TVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP--PANAFLF 213 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~ 213 (301)
+++|+ +.+++.|+. .+.|+|..+|+.. +-| ++|+|++
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~ 305 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS 305 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence 79999 899988874 6889999999875 333 4888887
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.13 Score=49.24 Aligned_cols=109 Identities=15% Similarity=0.263 Sum_probs=76.2
Q ss_pred hhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhc-ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-h
Q 043533 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI-FEGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-P 182 (301)
Q Consensus 109 ~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p 182 (301)
.|+.+++||--=..|++|.- ..++ +..+.+ .+....|+-+|+|.|-+..+.+++ ...++.++++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~-Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALL-DRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHH-hhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 46667777755455666542 3345 554421 112457889999999988776664 34567888887 7
Q ss_pred HHHhcCCC------CCCeEEEeCCCCC-CCC-c-chhHHH-------------HHHHHHHHhccc
Q 043533 183 HAVANLPE------ADNLKYIAGDMLR-FIP-P-ANAFLF-------------KILKKRREAIAS 225 (301)
Q Consensus 183 ~~~~~a~~------~~ri~~~~~D~~~-~~p-~-~D~i~~-------------~iL~~~~~aL~p 225 (301)
.++-.... .+||+++..||.+ .-| + +|+++. +.|.-+-+.|+|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCC
Confidence 76655543 7899999999988 555 4 999998 778888888888
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.18 Score=44.65 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=81.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC-------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP---------EADNLKYIAGDMLRFI------------- 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~---------~~~ri~~~~~D~~~~~------------- 205 (301)
.+...||.+|||-=.....+... +++++.=+|+|++++.-+ ..+++.++..|+...+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998888887422 367888888899876332 1578899999986321
Q ss_pred Cc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhc----hhhccccCCccCCH
Q 043533 206 PP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD----IVMSVNATGKERTE 270 (301)
Q Consensus 206 p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d----~~~~~~~~g~~rt~ 270 (301)
|. ...+++ ++|+.+.+...| |..+++|.+.+-..... ......... ..+-.... ..+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~ 231 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEWR-AGMRAPVYHAARGVDGSGLVF--GIDR 231 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhHH-HHHHHHHHHhhhccccccccc--CCCh
Confidence 11 122222 889999888777 45667777655221110 000000010 00000111 2467
Q ss_pred HHHHHHHHhCCCceeEE
Q 043533 271 SEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~ 287 (301)
++..++|++.||+....
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 99999999999998876
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.087 Score=45.21 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=86.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCC------CcchhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-P----HAVANLPEADNLKYIAGDMLRFI------PPANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p----~~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~- 213 (301)
+....+||-+|..+|.+...+..- .|+-.+.+++. | +.+..|++.+||--+-.|+..|. +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 677889999999999999999985 55888899998 4 45666666788888889998752 12788887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
-++.++..-||+ ||.++|.=-...-+.. .+ ... ..+=.+.|++.||+.
T Consensus 151 VaQp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p-----~~v---------------f~~e~~~L~~~~~~~ 207 (229)
T PF01269_consen 151 VAQPDQARIAALNARHFLKP---GGHLIISIKARSIDSTADP-----EEV---------------FAEEVKKLKEEGFKP 207 (229)
T ss_dssp -SSTTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH-----HHH---------------HHHHHHHHHCTTCEE
T ss_pred CCChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH-----HHH---------------HHHHHHHHHHcCCCh
Confidence 566777789999 8877775322111111 11 001 122245678899999
Q ss_pred eEEEecCC---ceeEEEEe
Q 043533 285 YKITPIFG---MKSLIEVY 300 (301)
Q Consensus 285 ~~~~~~~~---~~~~i~a~ 300 (301)
.+...+.. .+.++.++
T Consensus 208 ~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 208 LEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEE-TTTSTTEEEEEEE
T ss_pred heEeccCCCCCCcEEEEEE
Confidence 99888843 46666654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.051 Score=46.97 Aligned_cols=139 Identities=9% Similarity=0.049 Sum_probs=86.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeC-CCCC----CCC---c
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL--PHAVANLPEADNLKYIAG-DMLR----FIP---P 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl--p~~~~~a~~~~ri~~~~~-D~~~----~~p---~ 207 (301)
.+ +.|+ -..+.+.+||||..||.++..++++. ..++.++|. .+.....+..+||..+.. |+.. .+. +
T Consensus 70 al-e~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 70 AL-EEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HH-HhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 44 5554 12457899999999999999999885 457999998 555556666778766554 5542 122 2
Q ss_pred ---chhHHH---HHHHHHHHhcccCCCCcEEEE-EeeeeCCCccchhhhhhhhhhchhh-ccccCCccCCHHHHHHHHHh
Q 043533 208 ---ANAFLF---KILKKRREAIASNGERGKVII-IDIVINAEEEEHELTETKFLFDIVM-SVNATGKERTESEWAKLFFD 279 (301)
Q Consensus 208 ---~D~i~~---~iL~~~~~aL~p~~~gg~l~i-~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~g~~rt~~e~~~ll~~ 279 (301)
.|+=++ .+|-.+...++| ++-++. +-+-....+. ...-.- ........+...++.+++.+
T Consensus 147 ~~v~DvSFISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~---------~v~kkGvv~d~~~~~~v~~~i~~~~~~ 214 (245)
T COG1189 147 LIVIDVSFISLKLILPALLLLLKD---GGDLVLLVKPQFEAGRE---------QVGKKGVVRDPKLHAEVLSKIENFAKE 214 (245)
T ss_pred eEEEEeehhhHHHHHHHHHHhcCC---CceEEEEecchhhhhhh---------hcCcCceecCcchHHHHHHHHHHHHhh
Confidence 344333 999999999998 554443 3332222111 111000 00112234456788999999
Q ss_pred CCCceeEEEecC
Q 043533 280 AVFSHYKITPIF 291 (301)
Q Consensus 280 aGf~~~~~~~~~ 291 (301)
.||+...+...+
T Consensus 215 ~g~~~~gl~~Sp 226 (245)
T COG1189 215 LGFQVKGLIKSP 226 (245)
T ss_pred cCcEEeeeEccC
Confidence 999999887653
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.013 Score=46.68 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=70.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
+.++ +.+. -.+..+.+|+|.|.|....+.++.. -...+++++ |..+...+- +.+..|..-|.++ ++.
T Consensus 62 ~nVL-Sll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 62 ENVL-SLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHH-HHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 3355 5554 3445799999999999888888775 456889999 776665542 6778899999998 777
Q ss_pred cch--hHHH------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 207 PAN--AFLF------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 207 ~~D--~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
+|. +|+. .+-.+++.-|+. |.+++-.-+-+|+
T Consensus 138 dy~~vviFgaes~m~dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMPDLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred ccceEEEeehHHHHhhhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 643 2222 455566666676 7888888877765
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.036 Score=48.35 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=48.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
+.+.+|+|||||.==++.-.....|+.+.+++|+ ...++.... +.+.++...|.....|. +|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 4478999999999999998888889999999999 666665443 67788888899885443 898776
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.087 Score=40.82 Aligned_cols=85 Identities=16% Similarity=0.319 Sum_probs=57.5
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEeCCCCC---CCC---cchhHHH-----
Q 043533 153 LVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-A--DN---LKYIAGDMLR---FIP---PANAFLF----- 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-~--~r---i~~~~~D~~~---~~p---~~D~i~~----- 213 (301)
++|+|||+|... .+....+. ..++++|. +.++..+.. . .. +.+..+|... ++. .+|++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999987 44444443 47888898 555555332 1 11 5777777653 333 2677622
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
..++++.+.++| +|.+++.......
T Consensus 131 ~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLPPAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred cCCHHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 688999999999 7888877765443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.016 Score=54.98 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=46.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR 203 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~ 203 (301)
..+..+|+|+=||.|.++..|+++ ..+++++++ ++.++.|+. -++++|+.+|.++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 556689999999999999999955 468999999 888887775 4569999999864
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.01 Score=52.76 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=67.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc--ch
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP--AN 209 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~--~D 209 (301)
.++++.++-||||.|.+.....++ +.+ .+..+|+ ..+++..++ +++|.+..||-+. ..+. +|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 567899999999999999999987 665 4777777 555555443 7899999999664 3433 88
Q ss_pred hHHH---------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 210 AFLF---------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 210 ~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+|+. ..+.-+.++|++ ||.+++..-
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence 8886 777888899999 787777653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.027 Score=55.08 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhcCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPG--------IKCTVLDL-PHAVANLP 189 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~--------~~~~~~Dl-p~~~~~a~ 189 (301)
...+|+|.|||+|.++..++++.+. ..+.++|+ +.++..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 4569999999999999999987652 56889999 66666554
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.0086 Score=39.03 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=22.8
Q ss_pred HHHHHHhHHhcC---CCCCHHHHHHhcC-CCCC
Q 043533 14 QGQAQLYKLIHG---RAITLSELVSALD-IQPT 42 (301)
Q Consensus 14 ~~~l~lF~~L~~---~p~t~~elA~~~~-~~~~ 42 (301)
+++|||||.|++ +|+|++|||.++. .++.
T Consensus 6 aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~ 38 (51)
T PF08100_consen 6 AVELGIPDIIHNAGGGPLSLSEIAARLPTSNPS 38 (51)
T ss_dssp HHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TT
T ss_pred HHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcc
Confidence 579999999953 5999999999998 5544
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.046 Score=45.82 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=62.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCcchhHHH-------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPPANAFLF------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~------- 213 (301)
.-..++|||+|.|+|..+++-++.. ...++..|. |..+..++- .-.|.+...|..-+-|.+|+++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4557899999999999999988875 345666676 555544432 45577888787653334888877
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
+++. +...++.. |-.++|.++..+.
T Consensus 156 ~~a~~l~~-~~~~l~~~--g~~vlvgdp~R~~ 184 (218)
T COG3897 156 TEADRLIP-WKDRLAEA--GAAVLVGDPGRAY 184 (218)
T ss_pred hHHHHHHH-HHHHHHhC--CCEEEEeCCCCCC
Confidence 6666 66666651 6677777664443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.072 Score=49.43 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=64.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc---chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP---ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~---~D~i 211 (301)
...+.+|||+..+.|.=+..++..-++ ..++.+|. +.-+...++ ..++..+..|... ..+. ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 566799999999999999999998765 56689998 444433332 3446677777543 1222 7777
Q ss_pred HH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 212 LF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 212 ~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++ +||.++.+.|+| ||.|+.....+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCC
Confidence 76 999999999999 77666655433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.018 Score=49.09 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR 203 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~ 203 (301)
....|+|.-||.|...+..+.++| .++.+|+ |.-+.-|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 568999999999999999999987 4888898 776666653 6799999999974
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.036 Score=46.35 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-----CCC-cchhHHH--
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-----FIP-PANAFLF-- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-----~~p-~~D~i~~-- 213 (301)
+.++||+=+|+|.++.+.+.++ ..+++.+|. ..+...+++ ..++.++..|... .-. .||+|++
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 6899999999999999999986 458999998 555555543 4788888888763 112 2899888
Q ss_pred ----HH------HHH--HHHhcccCCCCcEEEEEeeeeC
Q 043533 214 ----KI------LKK--RREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 ----~i------L~~--~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+ +.. -...|+| +.++++|....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 11 112 2355888 55888887544
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.071 Score=45.32 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCCeEEEecCCccH---HHHHHHHHC-CCCeEEEeec--hHHHhcCCC----CCCeEEEeCCCCCC-----C------Cc
Q 043533 149 GLGSLVDVGGGNVS---FSRIISEAF-PGIKCTVLDL--PHAVANLPE----ADNLKYIAGDMLRF-----I------PP 207 (301)
Q Consensus 149 ~~~~vlDvGgG~G~---~~~~l~~~~-P~~~~~~~Dl--p~~~~~a~~----~~ri~~~~~D~~~~-----~------p~ 207 (301)
++..|+++|--.|. +...+++.. ++.+++++|+ +..-..+.+ .+||+++.||-.++ . |.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 36899999965555 444556665 8899999999 222222222 58999999997642 1 11
Q ss_pred chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 208 ANAFLF----------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 208 ~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
..+|+. +.|+.....+++ |++++|.|....
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCC---CCEEEEEecccc
Confidence 223332 788888888898 888877776543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.017 Score=53.56 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
...++|+|||.|.....+..- -..+.+++|. +.-+.++.. .+...++.+|+.+ |+++ +|.+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 347899999999998888754 3667888888 444433332 5667778889988 6776 776554
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
..+++++++++| ||.+++.+.+...
T Consensus 190 ~~~~~~~~y~Ei~rv~kp---GG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKP---GGLFIVKEWIKTA 220 (364)
T ss_pred cCCcHHHHHHHHhcccCC---CceEEeHHHHHhh
Confidence 999999999999 8888877765443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.23 Score=44.66 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=82.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec------hHHHhcCC-------------------------C--------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL------PHAVANLP-------------------------E-------- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl------p~~~~~a~-------------------------~-------- 190 (301)
..+||-=|||.|.++..|+..++.+++-=+-. .-++...+ .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 46899999999999999999999877631110 01111111 0
Q ss_pred ------CCCeEEEeCCCCC--CCCc----chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh
Q 043533 191 ------ADNLKYIAGDMLR--FIPP----ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE 247 (301)
Q Consensus 191 ------~~ri~~~~~D~~~--~~p~----~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~ 247 (301)
.+..+...|||.+ +.+. +|+|+. .-|+.|...|+| ||.++=+-+.+-.-...+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~~- 306 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP---GGVWINLGPLLYHFEDTH- 306 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC---CcEEEeccceeeeccCCC-
Confidence 1235557799987 3333 787765 888999999999 786665544332221110
Q ss_pred hhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 248 LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 248 ~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
+. ..-.+-+.+.+++..+.+..||++.+-+.+
T Consensus 307 --------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 307 --------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred --------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 00 111244789999999999999999987654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.086 Score=46.11 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=53.7
Q ss_pred HHHHHhhhhhcccCCC--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEE
Q 043533 136 SFVVKSECKQIFEGLG--SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKYI 197 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~~ 197 (301)
+.++ +++. +.+.. +|||+=+|+|..++.++.+ +++++.+|. |.+....+. ..|++++
T Consensus 76 ~~l~-kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVA-KAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHH-HHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 4567 7776 55555 9999999999999999988 678999998 443322211 1579999
Q ss_pred eCCCCC---CCCc-chhHHH
Q 043533 198 AGDMLR---FIPP-ANAFLF 213 (301)
Q Consensus 198 ~~D~~~---~~p~-~D~i~~ 213 (301)
.+|..+ ..+. ||+|++
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 998765 2344 899887
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.038 Score=52.73 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=46.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p 206 (301)
++..+.++||-||||.++.++++.. .+++++++ |+.++-|+. -.+++|+.|-..+.+|
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 6667899999999999999999774 67999998 888888775 4789999995444333
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.57 Score=42.15 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeechHHHhcCCC----------------------------CCCeEE
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF--PGIKCTVLDLPHAVANLPE----------------------------ADNLKY 196 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~--P~~~~~~~Dlp~~~~~a~~----------------------------~~ri~~ 196 (301)
+.+...|+-+|||.-.+...|...+ +.++++=+|.|+++..=-. .+|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 5667899999999999999999988 7889999999887653210 234445
Q ss_pred EeCCCCC---------------CCCc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh
Q 043533 197 IAGDMLR---------------FIPP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE 250 (301)
Q Consensus 197 ~~~D~~~---------------~~p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~ 250 (301)
+..|..+ .+|. +.++++ .+++.+.+.... +.+++.|.+.+.++-+.-+..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLA 240 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHH
Confidence 5555441 1121 122222 777888877775 789999998876654421110
Q ss_pred hhhhhchhhccccCC--ccCCHHHHHHHHHhCCCceeEEEec
Q 043533 251 TKFLFDIVMSVNATG--KERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 251 ~~~~~d~~~~~~~~g--~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+.....- ..| .-.|.+..++-+.++||+.+.+..+
T Consensus 241 --nlk~r~~~--L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 241 --NLKRRGCP--LHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred --HHHhcCCC--CchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 01111100 011 1247888999999999999987665
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.024 Score=50.88 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=64.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF----IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~----~p~-~D~i~~ 213 (301)
......|||+.++.|.=+..++...+ ..++++.|. ++-+...++ ..++.....|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45667899999999999999999877 678999998 554444432 45666666665432 122 565554
Q ss_pred ---------------------------------HHHHHHHHhc----ccCCCCcEEEEEeee
Q 043533 214 ---------------------------------KILKKRREAI----ASNGERGKVIIIDIV 238 (301)
Q Consensus 214 ---------------------------------~iL~~~~~aL----~p~~~gg~l~i~e~~ 238 (301)
++|+++.+.+ +| ||+++.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEecc
Confidence 9999999999 99 7776665543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.042 Score=41.48 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=26.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl 181 (301)
......+|||||.|.+.--|.+. +-++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 34678999999999999999887 456888886
|
; GO: 0008168 methyltransferase activity |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.61 Score=37.37 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=48.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----------------CCCeEEEeCCCCCCCCcc
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-----PHAVANLPE----------------ADNLKYIAGDMLRFIPPA 208 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-----p~~~~~a~~----------------~~ri~~~~~D~~~~~p~~ 208 (301)
...|+|+|=|.|.+=-.|.+.+|+-++.++|. |+.+..... +..+.+...|+=.-.++-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~ 108 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDKEK 108 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcch
Confidence 47999999999999999999999999999997 444333321 456777777774444456
Q ss_pred hhHHHHHHH-HHHHhcccCCCCcEEEEEee
Q 043533 209 NAFLFKILK-KRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 209 D~i~~~iL~-~~~~aL~p~~~gg~l~i~e~ 237 (301)
|+.+..-|. -+..+|.| |.++|...
T Consensus 109 d~a~a~~lspli~~~la~----gGi~vS~~ 134 (160)
T PF12692_consen 109 DDATAAWLSPLIAPVLAP----GGIMVSGQ 134 (160)
T ss_dssp HHHHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred hHHHHHhhhHHHHHHhcC----CcEEEeCC
Confidence 777774444 45577888 45666554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.45 Score=41.37 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc-----chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP-----ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~-----~D~i~~---- 213 (301)
.+++||=||=. =..+++++-.++..+++++|+ ..+++...+ +-.|+.+..|+.+|+|. ||+++.
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 35889999843 345556666677789999999 666665543 44499999999998884 899887
Q ss_pred ------HHHHHHHHhccc
Q 043533 214 ------KILKKRREAIAS 225 (301)
Q Consensus 214 ------~iL~~~~~aL~p 225 (301)
-.+.+..++|+.
T Consensus 123 T~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 123 TPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp SHHHHHHHHHHHHHTB-S
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 788999999997
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.23 Score=45.52 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=64.7
Q ss_pred cccCCCeEEEecC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC---CCCCCCCc-chhHHH----HH
Q 043533 146 IFEGLGSLVDVGG-GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG---DMLRFIPP-ANAFLF----KI 215 (301)
Q Consensus 146 ~~~~~~~vlDvGg-G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~---D~~~~~p~-~D~i~~----~i 215 (301)
+..+..+|+=+|. |.|.++..++++.- .+++++|. ++-.+.|++-..-.++.. |..+..+. +|+++- ..
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 3566777777775 57789999999764 99999999 777777776333333332 33333444 787765 88
Q ss_pred HHHHHHhcccCCCCcEEEEEeeee
Q 043533 216 LKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+....+.|++ ||+++++-...
T Consensus 242 ~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 242 LEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred HHHHHHHHhc---CCEEEEECCCC
Confidence 8889999999 89999988753
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.074 Score=49.33 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
..|||+=||.|.++..|++.. -+++++|. +++++.|+. -++++|+.++..
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 389999999999999999876 47999999 888888774 468999987763
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.16 Score=48.48 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=56.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCCCCCeEEEeCCCCCC---CCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-----PHAVANLPEADNLKYIAGDMLRF---IPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-----p~~~~~a~~~~ri~~~~~D~~~~---~p~-~D~i~~---- 213 (301)
....+.|+|...|.|.++.+|.+. | +.++.. +..+..+-...=|-. -+|+.++ +|. ||++..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchh-ccchhhccCCCCcchhheehhhhh
Confidence 455789999999999999999754 2 444443 222222222222333 3588775 454 898886
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.||-++-+.|+| ||.++|-|.
T Consensus 438 s~~~~rC~~~~illEmDRILRP---~G~~iiRD~ 468 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP---GGWVIIRDT 468 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC---CceEEEecc
Confidence 889999999999 888877654
|
; GO: 0008168 methyltransferase activity |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.021 Score=46.36 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCeEEEecCCccHHH-HHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--C---CcchhHHH
Q 043533 150 LGSLVDVGGGNVSFS-RIISEAFPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLRF--I---PPANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~-~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~~--~---p~~D~i~~ 213 (301)
++.||++|||.-.++ ..++...|...+.+-|- .+.++..++ ..+|..+..+.... + ..||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999965554 45566778888888887 444444432 45665555554431 1 12665554
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+.+.|+..|+| .|+-+++.+
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p---~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRP---SGRALLFSP 141 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCc---ccceeEecC
Confidence 788899999999 577555543
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.41 Score=43.29 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=79.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEeCCCCC-CCCc------ch-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDLPHAVANLPE---------ADNLKYIAGDMLR-FIPP------AN- 209 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~---------~~ri~~~~~D~~~-~~p~------~D- 209 (301)
.+...||-||||-=.-+-++- +| ++++.=+|+|++++.=++ ..++.+++.|+++ +++. ||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 347899999999666555554 34 477777788999874332 3489999999995 5442 23
Q ss_pred ----hHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chh-hhhhhhhhchhhc-cccCCccCC
Q 043533 210 ----AFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHE-LTETKFLFDIVMS-VNATGKERT 269 (301)
Q Consensus 210 ----~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~-~~~~~~~~d~~~~-~~~~g~~rt 269 (301)
++++ ++|+.+....+| |. .++.+...++... ... ............. ....-....
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 244 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GS-RVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDD 244 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---Cc-eEEEeccccHHHHhcccchhhhhhccccccccccceeccCC
Confidence 2222 999999999998 55 5555543222111 100 0000000000000 001112346
Q ss_pred HHHHHHHHHhCCCceeEEE
Q 043533 270 ESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~~~ 288 (301)
..|+..++.+.||......
T Consensus 245 ~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 245 PAEIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHHHhcCEEEEecC
Confidence 8899999999999988763
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.25 Score=43.50 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=43.7
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcchhhc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAASTLLIK 64 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~~L~~ 64 (301)
.|.+|.-.|.+||.|.+||-..+++++..+. |.++++.|.+|.++..++.
T Consensus 14 kRk~lLllL~egPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 14 KRKDLLLLLKEGPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIVE 74 (260)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHHH
Confidence 4888999999999999999999999999876 2677999999999986554
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.56 Score=40.43 Aligned_cols=53 Identities=25% Similarity=0.453 Sum_probs=37.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCC--------eEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGI--------KCTVLDLPHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~--------~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~ 203 (301)
|.+.+++||+..-.|.++..|.++ +-.+ +++.+|+..|... +.|.-+++|+..
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~ 100 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITS 100 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCC
Confidence 677899999999999999998876 2211 2899999666532 344445555543
|
|
| >PRK01381 Trp operon repressor; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.48 Score=35.22 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=33.0
Q ss_pred CChHHHHH--HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 7 QGAKELFQ--GQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 7 ~~~~~~~~--~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.+|.|+-+ .|++|+..|..|.+|-.|||+.+|++...+.
T Consensus 33 lTp~Er~al~~R~~I~~~L~~g~~sQREIa~~lGvSiaTIT 73 (99)
T PRK01381 33 LTPDEREALGTRVRIVEELLRGELSQREIKQELGVGIATIT 73 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhCCceeeeh
Confidence 36777655 6999999999999999999999999877654
|
|
| >TIGR01321 TrpR trp operon repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.56 Score=34.59 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred CChHHHHH--HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 7 QGAKELFQ--GQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 7 ~~~~~~~~--~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.++.|+.+ .|.+|+..|.++++|-.|||+++|++...+.
T Consensus 33 LTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~~lGiS~atIs 73 (94)
T TIGR01321 33 LTRSEREDLGDRIRIVNELLNGNMSQREIASKLGVSIATIT 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCChhhhh
Confidence 46777655 5999999998899999999999999887665
|
This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.7 Score=40.84 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 043533 163 FSRIISEAFPGIKCTVLDL-PHAVANLPE 190 (301)
Q Consensus 163 ~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~ 190 (301)
++.+|.+++|+.+++++|. ++.++.+.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 4678889999999999999 777777643
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.57 Score=42.27 Aligned_cols=64 Identities=14% Similarity=0.273 Sum_probs=40.9
Q ss_pred CCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC--C-c-chh
Q 043533 149 GLGSLVDVGGGNVS-FSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAG----DMLRFI--P-P-ANA 210 (301)
Q Consensus 149 ~~~~vlDvGgG~G~-~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~----D~~~~~--p-~-~D~ 210 (301)
...++||||+|.-. |.+.-++.| +.++++.|+ +..++.|++ .++|+++.. +++..+ + + +|+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 35789999999875 445555555 899999999 888887774 578988754 355532 2 2 888
Q ss_pred HHH
Q 043533 211 FLF 213 (301)
Q Consensus 211 i~~ 213 (301)
.++
T Consensus 181 tmC 183 (299)
T PF05971_consen 181 TMC 183 (299)
T ss_dssp EEE
T ss_pred Eec
Confidence 777
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.8 Score=38.11 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=49.9
Q ss_pred CCeEEEecCCccHHHHHH---HHHC--CCCeEEEeec----hHHHhc---------------------------CCC---
Q 043533 150 LGSLVDVGGGNVSFSRII---SEAF--PGIKCTVLDL----PHAVAN---------------------------LPE--- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l---~~~~--P~~~~~~~Dl----p~~~~~---------------------------a~~--- 190 (301)
++.|+++|+-.|..++.+ ++.+ ++-++.++|. |+.-.. ..+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 579999999999766544 3433 5667999996 332211 000
Q ss_pred -CCCeEEEeCCCCCCCCc------------chhHHH--HHHHHHHHhcccCCCCcEEEEEee
Q 043533 191 -ADNLKYIAGDMLRFIPP------------ANAFLF--KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 191 -~~ri~~~~~D~~~~~p~------------~D~i~~--~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++.++.|+|.+.+|. .|+|=. ..|..++..|.| || ++|+|-
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~---GG-iIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSP---GG-IIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEE---EE-EEEESS
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCC---Ce-EEEEeC
Confidence 36899999998653332 366665 999999999999 55 555543
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=86.58 E-value=0.1 Score=39.66 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=31.3
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh--CCCceeEEEecC
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD--AVFSHYKITPIF 291 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~--aGf~~~~~~~~~ 291 (301)
.+++++++.|+| |.++|+|+-.... +....... -.+..+...-....+++.+.|.+ .||+.++....+
T Consensus 25 ~~f~~~~~~L~p----GG~lilEpQ~w~s-----Y~~~~~~~-~~~~~n~~~i~lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 25 RFFRRIYSLLRP----GGILILEPQPWKS-----YKKAKRLS-EEIRENYKSIKLRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHHHHHEEE----EEEEEEE---HHH-----HHTTTTS--HHHHHHHHH----GGGHHHHHTSTTT---EEEEE---
T ss_pred HHHHHHHHhhCC----CCEEEEeCCCcHH-----HHHHhhhh-HHHHhHHhceEEChHHHHHHHHhcccceEEEEEcccC
Confidence 899999999999 5677888532211 10000000 00001111222345578888887 699998866553
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.66 E-value=2.2 Score=37.50 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=29.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~ 189 (301)
....||.+|+|+|.-++ ++......+++.-|+|.+++...
T Consensus 86 ~~~~vlELGsGtglvG~-~aa~~~~~~v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGI-LAALLLGAEVVLTDLPKVVENLK 125 (248)
T ss_pred cceeEEEecCCccHHHH-HHHHHhcceeccCCchhhHHHHH
Confidence 46789999999995444 44444578899999977665444
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.44 E-value=0.75 Score=42.73 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=64.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHHhcCCC-------------CCCeEEEeCCCCCC------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL---PHAVANLPE-------------ADNLKYIAGDMLRF------ 204 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl---p~~~~~a~~-------------~~ri~~~~~D~~~~------ 204 (301)
.......+|+|+|.|.....++...-.-+-+++.+ |.-+..... ...++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 66678999999999998888777654445555555 433322221 45688899999763
Q ss_pred CCcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 205 IPPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 205 ~p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
++++++|++ .=+.++..-+++ |.+++-.+.+.+..
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~---gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSKEILQKCKD---GTRIISSKPLVPRP 314 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhHHHHhhCCC---cceEeccccccccc
Confidence 233777776 233477888888 88888888888743
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=85.30 E-value=0.76 Score=30.81 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=26.4
Q ss_pred HHHHHhHHh-cCCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLI-HGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L-~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+++.|++.| .++|.|+.|||+.+|++...+.
T Consensus 11 ~R~~Il~~L~~~~~~t~~ela~~l~~~~~t~s 42 (61)
T PF12840_consen 11 TRLRILRLLASNGPMTVSELAEELGISQSTVS 42 (61)
T ss_dssp HHHHHHHHHHHCSTBEHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHH
Confidence 589999999 7899999999999998876554
|
... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.21 E-value=1.7 Score=41.10 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F-IPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~-~p~--~D~i~~--- 213 (301)
+..-|||||.|||.++...+++.-+ +++.++. ..|.+.|++ .++|+++.---.+ . .|. +|+++.
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3457999999999999999999844 6888887 667776664 5778777643322 2 222 565554
Q ss_pred ----------HHHHHHHHhccc
Q 043533 214 ----------KILKKRREAIAS 225 (301)
Q Consensus 214 ----------~iL~~~~~aL~p 225 (301)
.-++++++.|..
T Consensus 145 dtEligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhhhccccchhHHHHHHHhcc
Confidence 566777777643
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=84.55 E-value=0.87 Score=28.80 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKT 44 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l 44 (301)
.|+.|-..|.++|.++.|||+.++++...+
T Consensus 3 ~R~~Il~~L~~~~~~~~el~~~l~~s~~~v 32 (47)
T PF01022_consen 3 TRLRILKLLSEGPLTVSELAEELGLSQSTV 32 (47)
T ss_dssp HHHHHHHHHTTSSEEHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHhccccchHH
Confidence 578889999999999999999999876544
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.06 E-value=1.6 Score=37.90 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=45.0
Q ss_pred HHHHHhhhhhcccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC--------C--------CCCeEEE
Q 043533 136 SFVVKSECKQIFEGL--GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP--------E--------ADNLKYI 197 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~--------~--------~~ri~~~ 197 (301)
+.++ +++. +.+. .+|||.=+|-|.=+..++.. +.++++++...++...- . ..||+++
T Consensus 63 ~~l~-kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLA-KAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHH-HHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHH-HHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 5577 7775 4443 49999999999999998865 67899999844433221 1 2589999
Q ss_pred eCCCCC--CCCc--chhHHH
Q 043533 198 AGDMLR--FIPP--ANAFLF 213 (301)
Q Consensus 198 ~~D~~~--~~p~--~D~i~~ 213 (301)
.+|..+ ..+. +|+|.+
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE
T ss_pred cCCHHHHHhhcCCCCCEEEE
Confidence 999877 3332 888887
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 301 | ||||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 1e-64 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 2e-63 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-60 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-54 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 2e-54 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 2e-54 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 9e-22 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 5e-20 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-19 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 2e-19 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 9e-18 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 8e-11 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 2e-07 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-06 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 5e-05 |
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 303 bits (778), Expect = e-103
Identities = 136/355 (38%), Positives = 197/355 (55%), Gaps = 57/355 (16%)
Query: 1 MDANQD-QGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSA 36
M ++ + + E+F+ QA LYK I HG+ I+LS LVS
Sbjct: 1 MASSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSI 60
Query: 37 LDIQPTK-----------------TTVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVD 79
L + +K + +EE+Y LT AS LL++ CL+P V +D
Sbjct: 61 LQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLD 120
Query: 80 PFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVV 139
P + L W +LTL+ G FW+F+++NP N FN+AMASDS+++ +
Sbjct: 121 PTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALR 180
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
+C +F+GL S+VDVGGG + ++II E FP +KC V D P V NL ++NL Y+ G
Sbjct: 181 --DCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGG 238
Query: 200 DMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEH 246
DM IP A+A L K ILKK +EA+ ++G+RGKV IID+VI+ +++E+
Sbjct: 239 DMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN 298
Query: 247 ELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
++T+ K L D+ M+ GKER E EW KLF +A F HYKI+P+ G SLIE+YP
Sbjct: 299 QVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 287 bits (735), Expect = 4e-96
Identities = 140/355 (39%), Positives = 182/355 (51%), Gaps = 66/355 (18%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
EL+ Q LYK + HG+ +TLSEL S+L + P+K
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 45 ----------------------TVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 82
+E AY LT S LLI KP CLS V + P
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 125
Query: 83 VAPFQSLSSWFK-GTELTLWETVHGIKFWEFMNQNPAINQ--RFNEAMASDSEIMTSFVV 139
+ + S WF E TL+E G FW+F+N++ + F +AMASDS + +
Sbjct: 126 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 185
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
E K++FEGL SLVDVGGG +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 186 --ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243
Query: 200 DMLRFIPPANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH 246
DM + IP A+A L KILK +EAI+ G+ GKVIIIDI I+ ++
Sbjct: 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 303
Query: 247 ELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
LTE + +D+VM GKERT+ EW KL +DA FS YKITPI G KSLIEVYP
Sbjct: 304 GLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 278 bits (713), Expect = 6e-93
Identities = 68/344 (19%), Positives = 115/344 (33%), Gaps = 61/344 (17%)
Query: 8 GAKELFQGQAQLYKL---------------------IHGRAITLSELVSALDIQPTKT-- 44
G + Q LY+ + T +EL +A
Sbjct: 15 GDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDGPRTPAELAAATGTDADALRR 74
Query: 45 -----TVNG----QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKG 95
V + + LT L D P + +F D F ++S
Sbjct: 75 VLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALG- 133
Query: 96 TELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVD 155
E + + G + + + + + E M + S + + F G++ D
Sbjct: 134 PERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILAR---AGDFPATGTVAD 190
Query: 156 VGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-----ADNLKYIAGDMLRFIPPANA 210
VGGG F + PG++ +LD VA A K + GD LR +P A+
Sbjct: 191 VGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADV 250
Query: 211 FLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 257
+ K IL R + ++G +V++ID V+ + H+ D
Sbjct: 251 HVLKRILHNWGDEDSVRILTNCRRVMPAHG---RVLVIDAVVPEGNDAHQSK----EMDF 303
Query: 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+M TG+ERT +E LF A ++ + S+ P
Sbjct: 304 MMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 2e-88
Identities = 76/318 (23%), Positives = 135/318 (42%), Gaps = 46/318 (14%)
Query: 24 HGRAITLSELVSALDIQPTKTTV--------------------------NGQEEAYGLTA 57
G ++ SE+ S L + + G E YGL+
Sbjct: 59 PGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM 118
Query: 58 ASTLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQN 116
L+ D+ L+ + P + + + ++ L++ VHG+ +EFM ++
Sbjct: 119 VGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKD 178
Query: 117 PAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKC 176
+NQ FN++M ++ E FEG+ +LVDVGGG+ +I +P IK
Sbjct: 179 KKMNQIFNKSMVDVCATEMKRML--EIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKG 236
Query: 177 TVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAI 223
DLP + N P ++++ GDM +P +A + K L +A+
Sbjct: 237 INFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL 296
Query: 224 ASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFS 283
+ N GKVII++ ++ E E ++ D +M + G+ERTE ++ KL + FS
Sbjct: 297 SPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFS 353
Query: 284 HYKIT-PIFGMKSLIEVY 300
+++ F ++E Y
Sbjct: 354 KFQVACRAFNSLGVMEFY 371
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 1e-87
Identities = 68/315 (21%), Positives = 122/315 (38%), Gaps = 47/315 (14%)
Query: 22 LIHGRAITLSELVSALDIQPTKT-------------TVNGQEEAYGLTAASTLLIKDKPY 68
L+ T + L A G ++ + A S +L+ D
Sbjct: 66 LLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPAS 125
Query: 69 CLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA 128
++ P+ ++ L+ + T ++ +G FW+ +++P + FN AM
Sbjct: 126 PVATDARFQAAPWHWRAWEQLTHSVR-TGEASFDVANGTSFWQLTHEDPKARELFNRAMG 184
Query: 129 SDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANL 188
S S V F G + VD+GGG S + +AFPG++ T+L+ P
Sbjct: 185 SVSLTEAGQVA---AAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEA 241
Query: 189 PE-------ADNLKYIAGDMLRFIPP-ANAFLFK-------------ILKKRREAIASNG 227
E AD + + GD IP A+ +L K IL++ A+ +
Sbjct: 242 RELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPD- 300
Query: 228 ERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287
++++ID +I+ L D+++ V G ER+ESE+A L + +
Sbjct: 301 --SRLLVIDNLIDERPAASTL-----FVDLLLLVLVGGAERSESEFAALLEKSGLRVERS 353
Query: 288 TPI-FGMKSLIEVYP 301
P G ++E+
Sbjct: 354 LPCGAGPVRIVEIRR 368
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 262 bits (670), Expect = 3e-86
Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 45/315 (14%)
Query: 25 GRAITLSELVSALDIQPTKTTV------------------------NGQEEAYGLTAAST 60
I+ +E+ + L + V E YGL
Sbjct: 57 SGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK 116
Query: 61 LLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAI 119
L K++ L+P + + D + P+ L + +G+ +++ + I
Sbjct: 117 FLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL-EGGIPFNKAYGMNIFDYHGTDHRI 175
Query: 120 NQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVL 179
N+ FN+ M+S+S I ++ E FEGL ++VDVGGG + + +I +P I
Sbjct: 176 NKVFNKGMSSNSTITMKKIL--EMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINF 233
Query: 180 DLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASN 226
DLPH + + P ++++ GDM +P +A K +LK A+ +
Sbjct: 234 DLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDH 293
Query: 227 GERGKVIIIDIVINAEEEEHELTETKFLFDIVM-SVNATGKERTESEWAKLFFDAVFSHY 285
GKVI+ + ++ + T+ D +M + N GKERTE E+ L + F +
Sbjct: 294 ---GKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGF 350
Query: 286 KITPIFGMKSLIEVY 300
K+ ++E
Sbjct: 351 KVASCAFNTYVMEFL 365
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 3e-85
Identities = 72/317 (22%), Positives = 131/317 (41%), Gaps = 46/317 (14%)
Query: 24 HGRAITLSELVSALDIQP-------------------------TKTTVNGQEEAYGLTAA 58
G+++T +E+ + L + +YG
Sbjct: 53 GGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPV 112
Query: 59 STLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNP 117
L ++ ++ + D + + L + +G+ +E+ +P
Sbjct: 113 CKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVL-DGGIPFNKAYGMSAFEYHGTDP 171
Query: 118 AINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCT 177
N+ FNE M + S I+T ++ E FEGLG+LVDVGGG + I+ +P IK
Sbjct: 172 RFNRVFNEGMKNHSIIITKKLL--ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGV 229
Query: 178 VLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIA 224
DLPH ++ P+ + ++ GDM + +P + L K +LK +A+
Sbjct: 230 NFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALP 289
Query: 225 SNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-SVNATGKERTESEWAKLFFDAVFS 283
++ GKV+++ ++ E + ++ F D++M + N G+ER E E+ L A F+
Sbjct: 290 AH---GKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT 346
Query: 284 HYKITPIFGMKSLIEVY 300
K T I+ IE
Sbjct: 347 GVKSTYIYANAWAIEFT 363
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 9e-84
Identities = 61/319 (19%), Positives = 107/319 (33%), Gaps = 49/319 (15%)
Query: 22 LIHGRAITLSELVSALDIQPTKT-------TVNG-----QEEAYGLTAASTLLIKDKPYC 69
I A T+ L + D +P G + T LL D P
Sbjct: 47 HILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAA 106
Query: 70 LSPTVSVF-VDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA 128
+ F L + T +E+++G F+E + P + F+ +A
Sbjct: 107 QRAWHDLTQAVARADISFTRLPDAIR-TGRPTYESIYGKPFYEDLAGRPDLRASFDSLLA 165
Query: 129 SDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANL 188
D ++ + + ++DVGGG F+ I+ P + TVL++ V
Sbjct: 166 CDQDVAFDAPAA-AYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA 222
Query: 189 PE-------ADNLKYIAGDMLRFIPP-ANAFLFK-------------ILKKRREAIASNG 227
+D + + GD +P A+A + IL + EA+
Sbjct: 223 RSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG- 281
Query: 228 ERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287
G+++I + E+ E D+ M V G RT +W L A ++
Sbjct: 282 --GRILIHERDD---LHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 336
Query: 288 TPIFGMK-----SLIEVYP 301
+ SL+ + P
Sbjct: 337 RQLPSPTIPYDLSLLVLAP 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 6e-82
Identities = 63/314 (20%), Positives = 107/314 (34%), Gaps = 49/314 (15%)
Query: 22 LIHGRAITLSELVSALDIQPTKT-------TVNG-----QEEAYGLTAASTLLIKDKPYC 69
I T +E+ SA G + YGLT L D
Sbjct: 33 HIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAG 92
Query: 70 LSPTVSVFVDPF-FVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA 128
+ + F L+ + T + +G FWE + +P ++ F+ M+
Sbjct: 93 KRKWLDMNSAVGRGDLGFVELAHSIR-TGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMS 151
Query: 129 SDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANL 188
E+ + + + + LG +VDVGGG+ + A + TVLDL +
Sbjct: 152 HHLELDYTGIAA-KYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAA 208
Query: 189 PE-------ADNLKYIAGDMLRFIPP-ANAFLFK-------------ILKKRREAIASNG 227
+ + + G +P A ++ IL++ EA S
Sbjct: 209 HRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG- 267
Query: 228 ERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287
G V++I+ V E D+ M GKER+ +E +L A +
Sbjct: 268 --GVVLVIEAVAGDEHAGT-------GMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318
Query: 288 TPIFGMKSLIEVYP 301
PI S++E+
Sbjct: 319 HPI-SYVSIVEMTA 331
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 2e-81
Identities = 56/321 (17%), Positives = 98/321 (30%), Gaps = 50/321 (15%)
Query: 22 LIHGRAITLSELVSALDIQPTK--------------TTVNGQEEAYGLTAASTLLIKDKP 67
+ A TL+ L D P Q T LL P
Sbjct: 44 HLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHP 103
Query: 68 YCLSPTVSVFVDPFF-VAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEA 126
+ + F L + T + +G FWE ++ + A+ F+
Sbjct: 104 AQQRAWLDLNGAVSHADLAFTGLLDVVR-TGRPAYAGRYGRPFWEDLSADVALADSFDAL 162
Query: 127 MASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVA 186
M+ D ++ + + ++DVGGGN I+ P ++ T+++L
Sbjct: 163 MSCDEDLAYEAPAD-AYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 219
Query: 187 NLPE-------ADNLKYIAGDMLRFIPP-ANAFLFK-------------ILKKRREAIAS 225
AD + GD + +P A+ L IL+ A+
Sbjct: 220 RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP 279
Query: 226 NGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285
G+++++D + T L D+ M G+ RT E L A +
Sbjct: 280 G---GRLLVLDRADVEGDGADRFFST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 334
Query: 286 KITPIFGMK-----SLIEVYP 301
S++E
Sbjct: 335 SERTSGSTTLPFDFSILEFTA 355
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 2e-80
Identities = 63/313 (20%), Positives = 113/313 (36%), Gaps = 48/313 (15%)
Query: 22 LIHGRAITLSELVSALDIQPTKT-------TVNG-----QEEAYGLTAASTLLIKDKPYC 69
LI + L +A+ + + Y T S LL +D
Sbjct: 36 LIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLL-RDVEGS 94
Query: 70 LSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMAS 129
V F F A + + +E G F+ ++ + P +RF AM +
Sbjct: 95 FRDMVL-FYGEEFHAAWTPACEALL-SGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKA 152
Query: 130 DSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189
+ + F G S VDVGGG+ ++ I +A P + +LD ++
Sbjct: 153 SNLAFHEIPRLLD----FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVAR 207
Query: 190 E-------ADNLKYIAGDMLRFIPP-ANAFLFK-------------ILKKRREAIASNGE 228
+ + + + GDML+ +P + +L +L REA+A +G
Sbjct: 208 DNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDG- 266
Query: 229 RGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288
+V++I+ I+A E L+D+ + + G+ RT E L F+ +I
Sbjct: 267 --RVVVIERTISASEPSP----MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320
Query: 289 PIFGMKSLIEVYP 301
+ +I
Sbjct: 321 DLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 2e-73
Identities = 55/357 (15%), Positives = 121/357 (33%), Gaps = 71/357 (19%)
Query: 2 DANQDQGAKELFQGQAQLYKL----------------------IHGRAITLSELVSALDI 39
+ +L + +L + L+ L +
Sbjct: 17 RGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDLATLAADTGS 76
Query: 40 QPTKT-------TVNG----QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFV---AP 85
P + ++ + LT + + P + +
Sbjct: 77 VPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDF 136
Query: 86 FQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQ 145
+ LS +G + + + N F E S+++ +++ E K
Sbjct: 137 YMGLSQAVRGQK-------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE-EAK- 187
Query: 146 IFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIA 198
+G+ ++DVGGG S + + FP + T+L+LP A+ + E AD ++ IA
Sbjct: 188 -LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246
Query: 199 GDMLR-FIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAEEE 244
D+ + P A+A LF + KK +A+ S G+++I+D+VI+ E
Sbjct: 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILDMVIDDPEN 303
Query: 245 EHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+ + ++ M + + ++ + ++ + + + + V P
Sbjct: 304 PNFDYLSHYILGAGMPFS-VLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 8e-57
Identities = 46/311 (14%), Positives = 98/311 (31%), Gaps = 49/311 (15%)
Query: 22 LIHGRAITLSELVSALDIQPTKT-------TVNG----QEEAYGLTA-ASTLLIKDKPYC 69
I + L + G Q E Y LT+ ++ L + +
Sbjct: 34 AISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQSKFY 93
Query: 70 LSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMAS 129
+ + + P F L++ + ++ + +F +AM+
Sbjct: 94 VGDAIEFLLSPMITNGFNDLTAAVLKGGTAISS-------EGTLSPEHPVWVQFAKAMSP 146
Query: 130 DSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189
+ + + ++D+ + F +++ P + +D +
Sbjct: 147 MMANPAQLIAQ-LVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAK 205
Query: 190 E-------ADNLKYIAGDMLR--FIPPANAFLFK-------------ILKKRREAIASNG 227
E A IAG + + L +L+K + A+A
Sbjct: 206 ENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE- 264
Query: 228 ERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDAVFSHYK 286
GKVI+ D + N++ F +VM G T +E+ +F +A FSH +
Sbjct: 265 --GKVIVFDFIPNSDRITPPDA---AAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319
Query: 287 ITPIFGMKSLI 297
+ + + +
Sbjct: 320 LHSLPTTQQQV 330
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-50
Identities = 45/316 (14%), Positives = 97/316 (30%), Gaps = 60/316 (18%)
Query: 22 LIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTA-ASTLLIKDKPYC 69
L T +E+ ++ + K + + +A+ TA L
Sbjct: 52 LTQT-GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADY 110
Query: 70 LSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMAS 129
+ P V + L + E + + FN+AM
Sbjct: 111 IGP--IVEHQYLQWDNWPRLGEILRS------EKPLAFQQESRFAHDTRARDAFNDAMVR 162
Query: 130 DSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189
S+ M V + +F +++D+ GG+ ++ + P + + DLP
Sbjct: 163 LSQPMVDVVSE---LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAAR 219
Query: 190 E-------ADNLKYIAGDMLRFIPP----ANAFLFK-------------ILKKRREAIAS 225
+ +++ ++L A+ + ++ +
Sbjct: 220 KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP 279
Query: 226 NGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDAVF-- 282
G ++I+ + +N + L+ F + M VN G+ A + DA
Sbjct: 280 G---GALLILTMTMNDDRVTPALS---ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333
Query: 283 ---SHYKITPIFGMKS 295
S + T + G +S
Sbjct: 334 GERSIGRYTLLIGQRS 349
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-49
Identities = 43/314 (13%), Positives = 91/314 (28%), Gaps = 46/314 (14%)
Query: 24 HGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAASTLLIKDKPYCLSP 72
TL E+ + + +E+ Y L A L+ DK +
Sbjct: 47 KREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKM---AR 103
Query: 73 TVSVFVDPFFVAPFQSLSSWFK-GTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDS 131
F L G L +E ++Q P Q+
Sbjct: 104 VNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFY 163
Query: 132 EIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE- 190
+ L+D+GG ++ + ++ T++DLP + + +
Sbjct: 164 SDQSFGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQ 221
Query: 191 ------ADNLKYIAGDMLRFIPP----ANAFLFK-------------ILKKRREAIASNG 227
++ + ++L P +A IL + ++I +
Sbjct: 222 TAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD- 280
Query: 228 ERGKVIIIDIVINAEEEEHE-LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286
KV I++ + + + E T+ N K + + +A +
Sbjct: 281 --SKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
Query: 287 ITPIFGMK-SLIEV 299
I G+ S+++
Sbjct: 339 IQDNIGLGHSILQC 352
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 8e-06
Identities = 54/328 (16%), Positives = 103/328 (31%), Gaps = 87/328 (26%)
Query: 5 QDQGAKELFQGQAQLYKLIHGRAITLSELVSALDIQPTKTTVNGQEEAYGLTAAST--LL 62
Q+ A F ++ L+ R +++ +SA T T ++ + LT LL
Sbjct: 254 QNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAA----TTTHISLDHHSMTLTPDEVKSLL 307
Query: 63 IK---DKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFM-----N 114
+K +P L P + +P ++ T W+ V+ K +
Sbjct: 308 LKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNV 365
Query: 115 QNPAINQRFNEAMA---SDSEIMTSF-------VVKSECKQIFEGL--GSLVDVGGGNVS 162
PA ++ + ++ + I T V+KS+ + L SLV+ +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 163 FS-------------------RIISEAFPGIKCTVLDLPHAVANLPEADN--LKYIA--- 198
S R I + + K D + P D +I
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDDLI--PPYLDQYFYSHIGHHL 481
Query: 199 -----GDM----------LRFI--------PPANAF-----LFKILKKRREAIASNGERG 230
+ RF+ NA + LK + I N +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 231 KVIIIDIVINAEEEEHELTETKFLFDIV 258
+ ++ I+ + E L +K+ D++
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYT-DLL 568
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.77 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.7 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.68 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.65 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.64 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.63 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.62 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.61 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.6 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.59 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.59 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.58 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.58 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.57 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.57 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.57 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.57 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.53 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.53 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.53 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.53 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.51 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.51 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.5 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.5 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.5 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.5 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.5 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.5 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.49 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.49 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.49 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.48 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.48 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.48 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.46 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.44 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.43 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.42 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.42 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.41 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.41 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.41 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.41 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.41 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.4 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.4 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.39 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.35 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.35 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.34 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.32 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.31 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.3 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.29 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.29 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.29 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.29 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.28 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.28 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.28 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.28 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.28 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.27 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.26 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.26 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.25 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.23 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.23 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.23 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.23 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.22 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.21 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.21 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.21 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.2 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.2 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.19 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.18 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.18 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.17 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.17 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.17 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.16 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.15 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.14 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.14 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.14 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.14 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.14 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.14 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.13 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.13 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.12 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.12 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.12 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.12 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.11 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.1 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.1 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.09 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.09 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.08 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.08 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.07 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.06 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.06 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.05 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.05 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.05 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.04 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.04 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.03 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.03 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.02 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.02 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.02 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.02 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.01 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.01 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.01 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.0 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.99 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.99 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.98 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.97 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.96 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.95 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.95 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.95 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.95 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.95 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.94 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.94 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.94 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.94 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.94 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.94 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.94 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.93 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.93 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.93 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.92 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.91 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.91 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.91 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.9 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.9 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.9 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.9 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.9 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.89 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.88 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.87 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.87 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.86 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.86 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.85 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.84 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.83 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.83 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.82 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.82 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.81 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.81 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.81 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.81 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.81 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.81 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.8 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.78 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.78 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.77 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.77 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.77 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.76 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.76 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.74 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.72 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.69 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.68 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.67 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.66 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.64 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.62 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.62 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.62 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.6 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.54 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.53 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.53 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.52 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.52 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.46 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.46 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.44 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.43 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.42 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.42 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.41 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.4 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.4 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.39 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.37 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.37 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.35 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.34 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.31 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.31 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.31 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.31 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.3 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.3 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.28 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.27 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.27 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.25 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.23 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.23 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.22 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.22 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.21 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.2 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.15 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.1 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.05 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.02 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.97 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.96 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.96 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.9 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.87 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.77 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.68 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.66 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.65 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.65 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.64 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.62 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.61 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.6 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.56 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.42 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.41 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.31 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.29 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.28 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.23 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.23 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.08 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.02 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.99 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.96 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.91 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.72 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.65 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.58 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.43 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.16 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.11 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.99 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.89 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.62 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.93 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.97 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 92.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.54 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.87 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 90.41 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 89.84 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 87.75 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 87.36 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 85.11 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 84.95 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.77 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.32 | |
| 3kor_A | 119 | Possible Trp repressor; putative DNA-binding Trp r | 81.62 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 80.55 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-49 Score=362.10 Aligned_cols=277 Identities=16% Similarity=0.302 Sum_probs=247.1
Q ss_pred HHHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce-----------e----ecCCCeEEcChhcc-hhhcCCCCChhhhhh
Q 043533 14 QGQAQLYKLIHG--RAITLSELVSALDIQPTKTT-----------V----NGQEEAYGLTAAST-LLIKDKPYCLSPTVS 75 (301)
Q Consensus 14 ~~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~-----------v----e~~~~~y~~t~~s~-~L~~~~~~~l~~~~~ 75 (301)
+++|||||+|.+ +|+|++|||+++|++++.++ + +..++.|.||++++ +|++++|.+++.++.
T Consensus 28 a~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~ 107 (353)
T 4a6d_A 28 ACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQCSMLK 107 (353)
T ss_dssp HHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTCCHHHHH
T ss_pred HHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchHHHHHHH
Confidence 469999999964 78999999999999999877 1 23356899999997 788999999999998
Q ss_pred hhcCccchhhHHHHHhhhcCCCCchhHHhhCC---ChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCe
Q 043533 76 VFVDPFFVAPFQSLSSWFKGTELTLWETVHGI---KFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGS 152 (301)
Q Consensus 76 ~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~---~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
+.. ...++.|.+|.+++++|+ ++|...+|. ++|+++.++|+....|.++|...+....+.++ +.++ +++..+
T Consensus 108 ~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~-~~~~--~~~~~~ 182 (353)
T 4a6d_A 108 YMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVL-TAFD--LSVFPL 182 (353)
T ss_dssp HHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHH-HSSC--GGGCSE
T ss_pred HhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH-HhcC--cccCCe
Confidence 864 567899999999999998 668888884 58999999999999999999998877788899 9998 888899
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC------CCCeEEEeCCCCC-CCCcchhHHH------------
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE------ADNLKYIAGDMLR-FIPPANAFLF------------ 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~------------ 213 (301)
|||||||+|.++..++++||+++++++|+|+|++.+++ .+||+|+.+|||+ +.|.+|+|++
T Consensus 183 v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~ 262 (353)
T 4a6d_A 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKC 262 (353)
T ss_dssp EEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHH
T ss_pred EEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHH
Confidence 99999999999999999999999999999999987763 5899999999998 5667999887
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
+||++++++|+| ||+|+|+|.+++++...+ .....+|+.|++..+|++||.+||++||++|||+.++++++++
T Consensus 263 ~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~ 336 (353)
T 4a6d_A 263 SHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGA 336 (353)
T ss_dssp HHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSS
T ss_pred HHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 899999999999 999999999998876654 2346789999988999999999999999999999999999988
Q ss_pred ceeEEEEeC
Q 043533 293 MKSLIEVYP 301 (301)
Q Consensus 293 ~~~~i~a~~ 301 (301)
..++|+|+|
T Consensus 337 ~~~~i~ArK 345 (353)
T 4a6d_A 337 IYDAILARK 345 (353)
T ss_dssp SCEEEEEEC
T ss_pred ceEEEEEEe
Confidence 899999997
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=338.11 Aligned_cols=283 Identities=25% Similarity=0.420 Sum_probs=245.3
Q ss_pred HHHHHHHhHHhcC---CCCCHHHHHHhcCC--CCC---Cce----------e--ec----C----CCeEEcChhcchhhc
Q 043533 13 FQGQAQLYKLIHG---RAITLSELVSALDI--QPT---KTT----------V--NG----Q----EEAYGLTAASTLLIK 64 (301)
Q Consensus 13 ~~~~l~lF~~L~~---~p~t~~elA~~~~~--~~~---~l~----------v--e~----~----~~~y~~t~~s~~L~~ 64 (301)
.+++||||++|.+ +|+|++|||+++++ +++ .|+ + +. + +++|.+|+.+++|+.
T Consensus 39 ~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~ 118 (364)
T 3p9c_A 39 NAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTP 118 (364)
T ss_dssp HHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSC
T ss_pred HHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcC
Confidence 3479999999976 69999999999998 887 555 1 22 1 478999999998776
Q ss_pred C-CCCChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhh
Q 043533 65 D-KPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSEC 143 (301)
Q Consensus 65 ~-~~~~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~ 143 (301)
+ ++.++++++.+..++.++..|.+|.+++++|. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.++ +.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~-~~~ 196 (364)
T 3p9c_A 119 NEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELY 196 (364)
T ss_dssp CTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-HHC
T ss_pred CCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHH-Hhc
Confidence 5 47799999887666677899999999999998 78999999999999999999999999999988777777788 777
Q ss_pred hhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH----------
Q 043533 144 KQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF---------- 213 (301)
Q Consensus 144 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~---------- 213 (301)
+ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+|+.+|+++++|..|+|++
T Consensus 197 ~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 197 H-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQ 275 (364)
T ss_dssp C-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHH
T ss_pred c-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHH
Confidence 6 36778999999999999999999999999999999999999999889999999999988887788876
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-ccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-NATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
++|++++++|+| ||+|+|+|.+.++....+........+|+.|+. ..+|++||.+||+++|+++||+.+++.+
T Consensus 276 ~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 352 (364)
T 3p9c_A 276 HCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTY 352 (364)
T ss_dssp HHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 899999999999 999999999988765432111223568888885 4789999999999999999999999999
Q ss_pred cCCceeEEEEeC
Q 043533 290 IFGMKSLIEVYP 301 (301)
Q Consensus 290 ~~~~~~~i~a~~ 301 (301)
+++..++||++|
T Consensus 353 ~~~~~~vie~~k 364 (364)
T 3p9c_A 353 IYANAWAIEFTK 364 (364)
T ss_dssp EETTEEEEEEEC
T ss_pred cCCceEEEEEeC
Confidence 998899999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=328.92 Aligned_cols=277 Identities=22% Similarity=0.349 Sum_probs=246.2
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e-ecCCCeEEcChhcchhhcCCCCChhhhhhhhcCccc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V-NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 82 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v-e~~~~~y~~t~~s~~L~~~~~~~l~~~~~~~~~~~~ 82 (301)
+++||||++|.++|+|++|||+++|++++.++ + ++++++|.+|+.++.|++++|.++++++.++.++..
T Consensus 42 a~~lglf~~l~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~ 121 (348)
T 3lst_A 42 AAAVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILMFTDTMF 121 (348)
T ss_dssp HHHHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHH
T ss_pred HHHcCchhHhhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEecCCEEecCHHHHHHhcCCCccHHHHHHHhcCHHH
Confidence 47999999999899999999999999999887 1 348899999999998888888899999887655557
Q ss_pred hhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccH
Q 043533 83 VAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVS 162 (301)
Q Consensus 83 ~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~ 162 (301)
++.|.+|++++++|+ ++|+..+|.++|+|+.++|+..+.|.++|...+....+.++ +.++ +++..+|||||||+|.
T Consensus 122 ~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~-~~~~--~~~~~~vLDvG~G~G~ 197 (348)
T 3lst_A 122 WTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILA-RAGD--FPATGTVADVGGGRGG 197 (348)
T ss_dssp HHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHH-HHSC--CCSSEEEEEETCTTSH
T ss_pred HHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHH-HhCC--ccCCceEEEECCccCH
Confidence 899999999999998 67999999999999999999999999999998887788889 8888 7888999999999999
Q ss_pred HHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCCCCCcchhHHH-------------HHHHHHHHhcc
Q 043533 163 FSRIISEAFPGIKCTVLDLPHAVANLPE-----ADNLKYIAGDMLRFIPPANAFLF-------------KILKKRREAIA 224 (301)
Q Consensus 163 ~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~-------------~iL~~~~~aL~ 224 (301)
++..+++++|+++++++|+|+++...+. .+||+++.+|+++++|.||+|++ ++|++++++|+
T Consensus 198 ~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk 277 (348)
T 3lst_A 198 FLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMP 277 (348)
T ss_dssp HHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988873331 57899999999987888999887 89999999999
Q ss_pred cCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 225 SNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 225 p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
| ||+++|.|...++..... ....+|+.|+...+|+.||.+||+++|+++||+.+++.+..+..++||++|
T Consensus 278 p---gG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 278 A---HGRVLVIDAVVPEGNDAH----QSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp T---TCEEEEEECCBCSSSSCC----HHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred C---CCEEEEEEeccCCCCCcc----hhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9 999999999888764331 235678888877889999999999999999999999999777899999986
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=327.39 Aligned_cols=283 Identities=25% Similarity=0.423 Sum_probs=242.6
Q ss_pred HHHHHHHhHHhcC--C---CCCHHHHHHhcC-CCCC---Cce----------e--ec----C----CCeEEcChhcchhh
Q 043533 13 FQGQAQLYKLIHG--R---AITLSELVSALD-IQPT---KTT----------V--NG----Q----EEAYGLTAASTLLI 63 (301)
Q Consensus 13 ~~~~l~lF~~L~~--~---p~t~~elA~~~~-~~~~---~l~----------v--e~----~----~~~y~~t~~s~~L~ 63 (301)
.+++||||++|.+ | |+|++|||++++ .+++ .++ + +. + +++|.+|+.++.|.
T Consensus 40 ~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~ 119 (368)
T 3reo_A 40 AAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLT 119 (368)
T ss_dssp HHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHS
T ss_pred HHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHh
Confidence 3479999999976 4 599999999998 4665 444 1 22 2 36899999999766
Q ss_pred cC-CCCChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhh
Q 043533 64 KD-KPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSE 142 (301)
Q Consensus 64 ~~-~~~~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~ 142 (301)
.+ ++.++++++.+..++.++..|.+|.+++++|. ++|+..+|.++|+|+..+|+..+.|.++|...+....+.++ +.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~-~~ 197 (368)
T 3reo_A 120 KNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL-EM 197 (368)
T ss_dssp CCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHH-Hh
Confidence 54 57899999887756677899999999999997 78999999999999999999999999999988777777788 77
Q ss_pred hhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH---------
Q 043533 143 CKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF--------- 213 (301)
Q Consensus 143 ~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~--------- 213 (301)
++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+|+.+|+++++|..|+|++
T Consensus 198 ~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 198 YN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSD 276 (368)
T ss_dssp CC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCH
T ss_pred cc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCH
Confidence 75 36778999999999999999999999999999999999999999889999999999988887788876
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++|++++++|+| ||+|+|+|...++....+........+|+.|+.. .+|++||.+||+++|+++||+.+++.
T Consensus 277 ~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 277 EHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp HHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 799999999999 9999999999887654321112235688888865 58999999999999999999999999
Q ss_pred ecCCceeEEEEeC
Q 043533 289 PIFGMKSLIEVYP 301 (301)
Q Consensus 289 ~~~~~~~~i~a~~ 301 (301)
++.+..++||++|
T Consensus 354 ~~~~~~~vie~~k 366 (368)
T 3reo_A 354 SCAFNTYVMEFLK 366 (368)
T ss_dssp EEETTEEEEEEEC
T ss_pred EeCCCcEEEEEEe
Confidence 9988899999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=329.33 Aligned_cols=276 Identities=24% Similarity=0.421 Sum_probs=247.5
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e--ecCCCe-EEcChhcchhhcCCCCChhhhhhhhcCc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V--NGQEEA-YGLTAASTLLIKDKPYCLSPTVSVFVDP 80 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v--e~~~~~-y~~t~~s~~L~~~~~~~l~~~~~~~~~~ 80 (301)
+++||||++|.++|+|++|||+++|++++.++ + +.++++ |.+|+.++.|+++++.++++++.+..++
T Consensus 58 a~~lglf~~l~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~ 137 (369)
T 3gwz_A 58 AVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAP 137 (369)
T ss_dssp HHHHTTGGGGTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTTSCCTTCHHHHHHHHHHSH
T ss_pred HHHCChhhhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHHhcCCchhHHHHHHHcCCH
Confidence 47999999999999999999999999999887 1 456788 9999999989888888999999887655
Q ss_pred cchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCc
Q 043533 81 FFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGN 160 (301)
Q Consensus 81 ~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~ 160 (301)
..++.|.+|.+++++|+ ++|...+|.++|+|+.++|+..+.|.++|...+....+.++ +.++ +++..+|||||||+
T Consensus 138 ~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~-~~~~--~~~~~~vlDvG~G~ 213 (369)
T 3gwz_A 138 WHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVA-AAYD--FSGAATAVDIGGGR 213 (369)
T ss_dssp HHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHSC--CTTCSEEEEETCTT
T ss_pred HHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHH-HhCC--CccCcEEEEeCCCc
Confidence 57899999999999998 67999999999999999999999999999988877778888 8888 77889999999999
Q ss_pred cHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-------------HHHHHH
Q 043533 161 VSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF-------------KILKKR 219 (301)
Q Consensus 161 G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~-------------~iL~~~ 219 (301)
|.++..+++++|+++++++|+|.+++.+++ .+||+|+.+|+++++|. ||+|++ ++|+++
T Consensus 214 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~ 293 (369)
T 3gwz_A 214 GSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRI 293 (369)
T ss_dssp SHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHH
Confidence 999999999999999999999999988874 47899999999988885 999887 699999
Q ss_pred HHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe-cCCceeEEE
Q 043533 220 REAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP-IFGMKSLIE 298 (301)
Q Consensus 220 ~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~ 298 (301)
+++|+| ||+++|+|...++..... ...+|+.|+...+|++||.+||+++|+++||+++++.+ ..+..++||
T Consensus 294 ~~~L~p---gG~l~i~e~~~~~~~~~~-----~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie 365 (369)
T 3gwz_A 294 ATAMKP---DSRLLVIDNLIDERPAAS-----TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVE 365 (369)
T ss_dssp HTTCCT---TCEEEEEEEBCCSSCCHH-----HHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEE
T ss_pred HHHcCC---CCEEEEEEeccCCCCCCc-----hhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEE
Confidence 999999 999999999888765431 35678888877899999999999999999999999999 577899999
Q ss_pred EeC
Q 043533 299 VYP 301 (301)
Q Consensus 299 a~~ 301 (301)
++|
T Consensus 366 ~~~ 368 (369)
T 3gwz_A 366 IRR 368 (369)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-44 Score=324.45 Aligned_cols=273 Identities=22% Similarity=0.305 Sum_probs=240.3
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e--ecCCCeEEcChhcchhhcCCCCChhhhhhhhcCcc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V--NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPF 81 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v--e~~~~~y~~t~~s~~L~~~~~~~l~~~~~~~~~~~ 81 (301)
+++||||++|.+||+|++|||+++|++++.++ + +.++++|.+|+.++.|+++++.++++++.+..+..
T Consensus 25 a~~lglf~~l~~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~ 104 (332)
T 3i53_A 25 AATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVG 104 (332)
T ss_dssp HHHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGSTTCTTCCHHHHCTTSHHH
T ss_pred HHHcChHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHhcCCchhHHHHHHHcCCHh
Confidence 57999999999899999999999999999887 1 45689999999999888888888999988764334
Q ss_pred ch-hhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCc
Q 043533 82 FV-APFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGN 160 (301)
Q Consensus 82 ~~-~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~ 160 (301)
.+ +.|.+|++++++|+ ++|+..+|.++|+|+.++|+..+.|..+|...+....+.++ +.++ +++..+|||||||+
T Consensus 105 ~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~-~~~~--~~~~~~vlDvG~G~ 180 (332)
T 3i53_A 105 RGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIA-AKYD--WAALGHVVDVGGGS 180 (332)
T ss_dssp HHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGG-GSSC--CGGGSEEEEETCTT
T ss_pred HHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHH-HhCC--CCCCCEEEEeCCCh
Confidence 55 88999999999998 67999999999999999999999999999987766666677 7777 67779999999999
Q ss_pred cHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-------------HHHHHH
Q 043533 161 VSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF-------------KILKKR 219 (301)
Q Consensus 161 G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~-------------~iL~~~ 219 (301)
|.++..+++++|+++++++|+|++++.+++ .+||+|+.+|+++++|. ||+|++ ++|+++
T Consensus 181 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~ 260 (332)
T 3i53_A 181 GGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRC 260 (332)
T ss_dssp SHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHH
Confidence 999999999999999999999999988874 47899999999988885 999887 899999
Q ss_pred HHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEE
Q 043533 220 REAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEV 299 (301)
Q Consensus 220 ~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a 299 (301)
+++|+| ||+++|.|...++. .+ ...+|+.|+...+|++||.+||+++|+++||+.+++.++++ .++||+
T Consensus 261 ~~~L~p---gG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~ 329 (332)
T 3i53_A 261 AEAAGS---GGVVLVIEAVAGDE--HA-----GTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEM 329 (332)
T ss_dssp HHHHTT---TCEEEEEECCCC-----C-----CHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEE
T ss_pred HHhcCC---CCEEEEEeecCCCC--Cc-----cHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEE
Confidence 999999 99999999988776 22 24678888777889999999999999999999999999988 999999
Q ss_pred eC
Q 043533 300 YP 301 (301)
Q Consensus 300 ~~ 301 (301)
++
T Consensus 330 r~ 331 (332)
T 3i53_A 330 TA 331 (332)
T ss_dssp EE
T ss_pred ee
Confidence 85
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=314.60 Aligned_cols=273 Identities=23% Similarity=0.371 Sum_probs=240.3
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e--ecCCCeEEcChhcchhhcCCCCChhhhhhhhcCcc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V--NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPF 81 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v--e~~~~~y~~t~~s~~L~~~~~~~l~~~~~~~~~~~ 81 (301)
+++||||++|.++|+|++|||+++|++++.++ + +.+++.|.+|+.++.|+ ++|.++++++.+..+..
T Consensus 28 ~~~lgi~~~l~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~ 106 (334)
T 2ip2_A 28 ATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR-DVEGSFRDMVLFYGEEF 106 (334)
T ss_dssp HHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTS-SSTTCSHHHHHHHTTHH
T ss_pred HHHcCcHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHh-CCCccHHHHHHHhcCch
Confidence 36999999999899999999999999999887 1 45668999999999888 88889999998875443
Q ss_pred chhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCcc
Q 043533 82 FVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNV 161 (301)
Q Consensus 82 ~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G 161 (301)
. +.|.+|++++++|+ ++|+..+|.++|+|+.++|+..+.|.++| ..+....+.++ +.++ +++ .+|||||||+|
T Consensus 107 ~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~-~~~~--~~~-~~vlDvG~G~G 179 (334)
T 2ip2_A 107 H-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIP-RLLD--FRG-RSFVDVGGGSG 179 (334)
T ss_dssp H-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHH-HHSC--CTT-CEEEEETCTTC
T ss_pred h-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHH-HhCC--CCC-CEEEEeCCCch
Confidence 4 89999999999998 78998899999999999999999999999 77776777888 8887 677 99999999999
Q ss_pred HHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-------------HHHHHHH
Q 043533 162 SFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF-------------KILKKRR 220 (301)
Q Consensus 162 ~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~-------------~iL~~~~ 220 (301)
.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++|. ||+|++ ++|++++
T Consensus 180 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~ 259 (334)
T 2ip2_A 180 ELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCR 259 (334)
T ss_dssp HHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999888887764 47899999999988777 999887 8999999
Q ss_pred HhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 221 EAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 221 ~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
++|+| ||+++|.|...++.... .....+|+.|+...+|++||.+||+++++++||+.+++.+.++..++||++
T Consensus 260 ~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 332 (334)
T 2ip2_A 260 EAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAA 332 (334)
T ss_dssp HHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEE
T ss_pred HhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEE
Confidence 99999 99999999988765432 124567888876678999999999999999999999999998889999998
Q ss_pred C
Q 043533 301 P 301 (301)
Q Consensus 301 ~ 301 (301)
|
T Consensus 333 ~ 333 (334)
T 2ip2_A 333 R 333 (334)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=314.74 Aligned_cols=286 Identities=47% Similarity=0.781 Sum_probs=243.2
Q ss_pred HHHHHHhHHhcC--CCCCHHHHHHhcCCCCC---Cce----------e--ec-----C-----CCeEEcChhcchhhcCC
Q 043533 14 QGQAQLYKLIHG--RAITLSELVSALDIQPT---KTT----------V--NG-----Q-----EEAYGLTAASTLLIKDK 66 (301)
Q Consensus 14 ~~~l~lF~~L~~--~p~t~~elA~~~~~~~~---~l~----------v--e~-----~-----~~~y~~t~~s~~L~~~~ 66 (301)
+++||||++|.+ +|+|++|||+++++++. .++ + +. + +++|.+|+.+++|++++
T Consensus 30 a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~ 109 (358)
T 1zg3_A 30 AMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK 109 (358)
T ss_dssp HHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTS
T ss_pred HHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCC
Confidence 369999999975 49999999999999643 444 1 33 2 47999999999999998
Q ss_pred CCChhhhhhhhcCccchhhHHHHHhhhcCCC-CchhHHhhCCChhHHhhcCchHHH--HHHHHhhcccccchHHHHHhhh
Q 043533 67 PYCLSPTVSVFVDPFFVAPFQSLSSWFKGTE-LTLWETVHGIKFWEFMNQNPAINQ--RFNEAMASDSEIMTSFVVKSEC 143 (301)
Q Consensus 67 ~~~l~~~~~~~~~~~~~~~~~~L~~~l~~g~-~~~~~~~~g~~~~e~~~~~~~~~~--~f~~am~~~~~~~~~~~~~~~~ 143 (301)
|.++++++.+..++.+++.|.+|++++++|. .++|+.++|.++|+|+.++|+..+ .|+++|...+.... .++ +.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~-~~~ 187 (358)
T 1zg3_A 110 PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVL-QEN 187 (358)
T ss_dssp TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHH-HHT
T ss_pred CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHH-Hhc
Confidence 8899999988765667899999999999983 278999999999999999999999 99999998776655 788 888
Q ss_pred hhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH----------
Q 043533 144 KQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF---------- 213 (301)
Q Consensus 144 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~---------- 213 (301)
++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.||+|++
T Consensus 188 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~ 267 (358)
T 1zg3_A 188 KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 267 (358)
T ss_dssp HHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHH
T ss_pred chhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHH
Confidence 3337788999999999999999999999999999999999999998767799999999988888998887
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
++|++++++|+|.++||+++|+|...++....+........+|+.|+...+|+.||.+||+++|+++||+.+++.++
T Consensus 268 ~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 347 (358)
T 1zg3_A 268 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPI 347 (358)
T ss_dssp HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEec
Confidence 89999999999711158999999998876543211123456888887767899999999999999999999999998
Q ss_pred CCceeEEEEeC
Q 043533 291 FGMKSLIEVYP 301 (301)
Q Consensus 291 ~~~~~~i~a~~ 301 (301)
++..++||++|
T Consensus 348 ~~~~~vie~~~ 358 (358)
T 1zg3_A 348 SGFKSLIEVYP 358 (358)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCcEEEEEeC
Confidence 88889999987
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=310.11 Aligned_cols=284 Identities=43% Similarity=0.804 Sum_probs=241.5
Q ss_pred HHHHHHhHHhcC--CCCCHHHHHHhcCCC---CCCce----------e--ec--CCCeEEcChhcchhhcCCCCChhhhh
Q 043533 14 QGQAQLYKLIHG--RAITLSELVSALDIQ---PTKTT----------V--NG--QEEAYGLTAASTLLIKDKPYCLSPTV 74 (301)
Q Consensus 14 ~~~l~lF~~L~~--~p~t~~elA~~~~~~---~~~l~----------v--e~--~~~~y~~t~~s~~L~~~~~~~l~~~~ 74 (301)
+++||||++|.+ +|+|++|||++++++ ++.++ + +. ++++|.+|+.+++|++++|.++++++
T Consensus 36 a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~ 115 (352)
T 1fp2_A 36 AVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMV 115 (352)
T ss_dssp HHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTSSSCCHHHH
T ss_pred HHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHHHhCCCCccHHHHH
Confidence 369999999975 599999999999996 43444 1 33 36899999999999999888999999
Q ss_pred hhhcCccchhhHHHHHhhhc-CCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeE
Q 043533 75 SVFVDPFFVAPFQSLSSWFK-GTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSL 153 (301)
Q Consensus 75 ~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~v 153 (301)
.+..++.+++.|.+|+++++ +|+ ++|+.++|.++|+|+.++|+..+.|.++|...+....+. + +.+++.+++..+|
T Consensus 116 ~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~-~~~~~~~~~~~~v 192 (352)
T 1fp2_A 116 ECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-L-RDCDFVFDGLESI 192 (352)
T ss_dssp HHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-H-HTCHHHHTTCSEE
T ss_pred HHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-H-HhcccccccCceE
Confidence 88755567899999999999 776 789999999999999999999999999999887766666 7 7773337788999
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH-------------HHHHHHH
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF-------------KILKKRR 220 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~-------------~iL~~~~ 220 (301)
||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.||+|++ ++|++++
T Consensus 193 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~ 272 (352)
T 1fp2_A 193 VDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCK 272 (352)
T ss_dssp EEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred EEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998767799999999888888998887 8999999
Q ss_pred HhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 221 EAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 221 ~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
++|+|.++||+++|.|...++....+.+......+|+.|+. .+|+.||.+||+++|+++||+.+++.+.++..++||++
T Consensus 273 ~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 351 (352)
T 1fp2_A 273 EAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351 (352)
T ss_dssp HHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred HhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEe
Confidence 99998112699999999888765432111223567887776 56889999999999999999999999988888999998
Q ss_pred C
Q 043533 301 P 301 (301)
Q Consensus 301 ~ 301 (301)
|
T Consensus 352 ~ 352 (352)
T 1fp2_A 352 P 352 (352)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=311.91 Aligned_cols=281 Identities=27% Similarity=0.470 Sum_probs=226.5
Q ss_pred HHHHHhHHhcC-C-C---CCHHHHHHhcCC---C---CCCce----------e--ec----C----CCeEEcChhcchhh
Q 043533 15 GQAQLYKLIHG-R-A---ITLSELVSALDI---Q---PTKTT----------V--NG----Q----EEAYGLTAASTLLI 63 (301)
Q Consensus 15 ~~l~lF~~L~~-~-p---~t~~elA~~~~~---~---~~~l~----------v--e~----~----~~~y~~t~~s~~L~ 63 (301)
++||||++|.+ + | +|++|||+++++ + ++.++ + +. . +++|.+|+.+++|+
T Consensus 45 ~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~ 124 (372)
T 1fp1_D 45 IDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLV 124 (372)
T ss_dssp HHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGS
T ss_pred HHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHh
Confidence 69999999986 5 7 999999999999 4 44444 1 33 2 35999999999999
Q ss_pred cCCC-CChhhhhhhhcCccchhhHHHHHhhhcCC-CCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHh
Q 043533 64 KDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGT-ELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKS 141 (301)
Q Consensus 64 ~~~~-~~l~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~ 141 (301)
+++| .++++++.+..++.+++.|.+|++++++| . ++|+..+|.++|+|+.++|+..+.|+++|...+....+.++ +
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~-~ 202 (372)
T 1fp1_D 125 PDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-E 202 (372)
T ss_dssp TTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHH-H
Confidence 9887 78999998875556789999999999998 5 77988899999999999999999999999988776677788 7
Q ss_pred hhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH--------
Q 043533 142 ECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF-------- 213 (301)
Q Consensus 142 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~-------- 213 (301)
.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|++
T Consensus 203 ~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 203 IYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWS 281 (372)
T ss_dssp HCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSC
T ss_pred Hhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCC
Confidence 774 36778899999999999999999999999999999999999998878899999999988888998887
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++|++++++|+| ||+++|.|...++....+........+|+.|+...+|+.||.+||+++|+++||+.+++.
T Consensus 282 d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 358 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 358 (372)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 899999999999 999999999888765432000123567777776567889999999999999999999998
Q ss_pred ec-CCceeEEEEeC
Q 043533 289 PI-FGMKSLIEVYP 301 (301)
Q Consensus 289 ~~-~~~~~~i~a~~ 301 (301)
++ ++..++||++|
T Consensus 359 ~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 359 CRAFNSLGVMEFYK 372 (372)
T ss_dssp EEETTTEEEEEEEC
T ss_pred EcCCCCeEEEEEeC
Confidence 84 55259999987
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=301.45 Aligned_cols=277 Identities=21% Similarity=0.285 Sum_probs=235.9
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e--ecCCC--eEEcChhcchhhcCCCCChhhhhhhhcC
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V--NGQEE--AYGLTAASTLLIKDKPYCLSPTVSVFVD 79 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v--e~~~~--~y~~t~~s~~L~~~~~~~l~~~~~~~~~ 79 (301)
+++||||++|.++|+|++|||+++|++++.++ + +..++ .|.+|+.+++|+++++.+++.++.+..+
T Consensus 36 ~~~l~i~~~l~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~ 115 (374)
T 1qzz_A 36 AATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGA 115 (374)
T ss_dssp HHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGSTTCTTCHHHHHCTTSH
T ss_pred HHHcChHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhhcCCCcccHHHHHHHcCC
Confidence 36999999998899999999999999998887 1 33567 9999999999999988899999887643
Q ss_pred ccch-hhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecC
Q 043533 80 PFFV-APFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGG 158 (301)
Q Consensus 80 ~~~~-~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGg 158 (301)
...+ ..|.+|.+.+++|+ ++|+..+|.++|+++..+|+..+.|.++|...+....+.++ +.++ +.+..+||||||
T Consensus 116 ~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~--~~~~~~vlDvG~ 191 (374)
T 1qzz_A 116 VSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPA-DAYD--WSAVRHVLDVGG 191 (374)
T ss_dssp HHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHH-HTSC--CTTCCEEEEETC
T ss_pred hhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHH-HhCC--CCCCCEEEEECC
Confidence 3456 88999999999998 66888899999999999999999999999988777778888 8887 777899999999
Q ss_pred CccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-------------HHHH
Q 043533 159 GNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF-------------KILK 217 (301)
Q Consensus 159 G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~-------------~iL~ 217 (301)
|+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++|. ||+|++ ++|+
T Consensus 192 G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~ 271 (374)
T 1qzz_A 192 GNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILR 271 (374)
T ss_dssp TTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHH
Confidence 99999999999999999999999989888764 35899999999887887 999876 7999
Q ss_pred HHHHhcccCCCCcEEEEEee--eeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCce-
Q 043533 218 KRREAIASNGERGKVIIIDI--VINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMK- 294 (301)
Q Consensus 218 ~~~~aL~p~~~gg~l~i~e~--~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~- 294 (301)
+++++|+| ||+++|.|. ..++.... .....+++.|+...+|+.++.++|.++|+++||+++++..+++..
T Consensus 272 ~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~ 344 (374)
T 1qzz_A 272 GCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTL 344 (374)
T ss_dssp HHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSC
T ss_pred HHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcc
Confidence 99999999 999999998 76654322 123467777776678899999999999999999999999887766
Q ss_pred ----eEEEEeC
Q 043533 295 ----SLIEVYP 301 (301)
Q Consensus 295 ----~~i~a~~ 301 (301)
++|++++
T Consensus 345 ~~~~~~i~~~~ 355 (374)
T 1qzz_A 345 PFDFSILEFTA 355 (374)
T ss_dssp SSCEEEEEEEE
T ss_pred cCCcEEEEEEE
Confidence 9999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=299.58 Aligned_cols=276 Identities=21% Similarity=0.330 Sum_probs=239.1
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------e-ecCCCeEEcChhcchhhcCCCCChhhhhhhhcCcc-
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------V-NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPF- 81 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------v-e~~~~~y~~t~~s~~L~~~~~~~l~~~~~~~~~~~- 81 (301)
++|+||++|.++|.|++|||+++++++..+. + +..+|+|.+|+.+++|++++|.+++.++.+..++.
T Consensus 40 ~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~ 119 (360)
T 1tw3_A 40 ATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVAR 119 (360)
T ss_dssp HHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHH
T ss_pred HHhCHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHHHhcCCchhHHHHHHHhcCchh
Confidence 6999999999899999999999999998887 1 44678999999999999999899999988764333
Q ss_pred chhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCcc
Q 043533 82 FVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNV 161 (301)
Q Consensus 82 ~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G 161 (301)
.+..|.+|.+.+++|+ ++++..+|.++|+++..+|+....|..+|...+....+.++ +.++ +.+..+|||||||+|
T Consensus 120 ~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~-~~~~--~~~~~~vLDvG~G~G 195 (360)
T 1tw3_A 120 ADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA-AAYD--WTNVRHVLDVGGGKG 195 (360)
T ss_dssp HGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHH-HHSC--CTTCSEEEEETCTTS
T ss_pred HHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHH-HhCC--CccCcEEEEeCCcCc
Confidence 5789999999999998 56888899999999999999999999999988877778888 8887 777889999999999
Q ss_pred HHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-------------HHHHHHH
Q 043533 162 SFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF-------------KILKKRR 220 (301)
Q Consensus 162 ~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~-------------~iL~~~~ 220 (301)
.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++|. ||+|++ ++|++++
T Consensus 196 ~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~ 275 (360)
T 1tw3_A 196 GFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCA 275 (360)
T ss_dssp HHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHH
Confidence 99999999999999999999888887764 35899999999987887 998876 7999999
Q ss_pred HhcccCCCCcEEEEEeee-eCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCc-----e
Q 043533 221 EAIASNGERGKVIIIDIV-INAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGM-----K 294 (301)
Q Consensus 221 ~aL~p~~~gg~l~i~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-----~ 294 (301)
++|+| ||+++|.|.. .++..... ....+|+.|+...+++.++.++|+++|+++||+++++..+++. .
T Consensus 276 ~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~ 348 (360)
T 1tw3_A 276 EALEP---GGRILIHERDDLHENSFNE----QFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDL 348 (360)
T ss_dssp HTEEE---EEEEEEEECCBCGGGCCSH----HHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEE
T ss_pred HhcCC---CcEEEEEEEeccCCCCCcc----hhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCcc
Confidence 99999 9999999988 66543221 2345777777666889999999999999999999999888654 7
Q ss_pred eEEEEeC
Q 043533 295 SLIEVYP 301 (301)
Q Consensus 295 ~~i~a~~ 301 (301)
++|+++|
T Consensus 349 ~~i~~~~ 355 (360)
T 1tw3_A 349 SLLVLAP 355 (360)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8999975
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=297.35 Aligned_cols=275 Identities=17% Similarity=0.195 Sum_probs=221.7
Q ss_pred HHHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce----------e-ecCCCeEEcChhcchhhcCCCCChhhhhhhhcCc
Q 043533 14 QGQAQLYKLIHG--RAITLSELVSALDIQPTKTT----------V-NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDP 80 (301)
Q Consensus 14 ~~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~----------v-e~~~~~y~~t~~s~~L~~~~~~~l~~~~~~~~~~ 80 (301)
+++||||++|.+ +|+|++|||+++|++++.++ + ++++++|++|+.+++|+++++.+ .++.+. ..
T Consensus 35 a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~L~~~~~~~--~~~~~~-~~ 111 (363)
T 3dp7_A 35 MLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKMAR--VNMEFN-HD 111 (363)
T ss_dssp HHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTEEEECHHHHHHHHCHHHH--HHHHHH-HH
T ss_pred HHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecCCEEecccchHHhhCCCccc--chheee-cH
Confidence 479999999987 89999999999999999988 1 55689999999999999887433 234433 35
Q ss_pred cchhhHHHHHhhhcCCCCchhHHhhC--CChhHHhhcCchHHH----HHHHHhhcccccchHHHHHhhhhhcccCCCeEE
Q 043533 81 FFVAPFQSLSSWFKGTELTLWETVHG--IKFWEFMNQNPAINQ----RFNEAMASDSEIMTSFVVKSECKQIFEGLGSLV 154 (301)
Q Consensus 81 ~~~~~~~~L~~~l~~g~~~~~~~~~g--~~~~e~~~~~~~~~~----~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vl 154 (301)
..++.|.+|++++++|+ +++...+| .++|+++.++|+..+ .|..+|...+ ...++ +.+. ..+..+||
T Consensus 112 ~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l-~~~~--~~~~~~vl 184 (363)
T 3dp7_A 112 VNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKAL-EIVF--SHHPKRLL 184 (363)
T ss_dssp TTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHH-HHHG--GGCCSEEE
T ss_pred HhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHH-HHhc--ccCCCEEE
Confidence 67899999999999998 55777788 689999999998766 4777776543 23456 5544 35678999
Q ss_pred EecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCC---CCc-chhHHH----------
Q 043533 155 DVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRF---IPP-ANAFLF---------- 213 (301)
Q Consensus 155 DvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~---~p~-~D~i~~---------- 213 (301)
|||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|++++ +|. ||+|++
T Consensus 185 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~ 264 (363)
T 3dp7_A 185 DIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEE 264 (363)
T ss_dssp EESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHH
T ss_pred EeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHH
Confidence 999999999999999999999999999999988774 26899999999984 675 999887
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh-hhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHE-LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~-~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
++|++++++|+| ||+|+|+|...++....+. +.......++.|+...+++.||.+||+++|+++||+++++.+
T Consensus 265 ~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~ 341 (363)
T 3dp7_A 265 EVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQD 341 (363)
T ss_dssp HHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCC
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEe
Confidence 889999999999 9999999998887654321 000112334445555678899999999999999999999987
Q ss_pred cCC-ceeEEEEeC
Q 043533 290 IFG-MKSLIEVYP 301 (301)
Q Consensus 290 ~~~-~~~~i~a~~ 301 (301)
..+ ..++|+++|
T Consensus 342 ~~g~~~svi~~~~ 354 (363)
T 3dp7_A 342 NIGLGHSILQCRL 354 (363)
T ss_dssp CBTTTBEEEEEEE
T ss_pred CCCCCceEEEEee
Confidence 754 589999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=284.70 Aligned_cols=273 Identities=18% Similarity=0.236 Sum_probs=232.4
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e-ecCCCeEEcChhc-chhhcCCCCChhhhhhhhcCcc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V-NGQEEAYGLTAAS-TLLIKDKPYCLSPTVSVFVDPF 81 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v-e~~~~~y~~t~~s-~~L~~~~~~~l~~~~~~~~~~~ 81 (301)
+++||||++|.++|+|++|||+++|++++.++ + ++++++|.+|+.+ ++|++++|.++++++.+..++.
T Consensus 26 ~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (335)
T 2r3s_A 26 AVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPM 105 (335)
T ss_dssp HHHTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHH
T ss_pred HHHcChHHHHhcCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCHHHHHHhccCCcHHHHHHHHHhcchh
Confidence 36999999999899999999999999998887 1 5578999999999 5899998889999998875446
Q ss_pred chhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCcc
Q 043533 82 FVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNV 161 (301)
Q Consensus 82 ~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G 161 (301)
.++.|.+|++++++|. ++|+ + |+++.++++....|...|..........++ +.+++.+.+..+|||||||+|
T Consensus 106 ~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlDvG~G~G 177 (335)
T 2r3s_A 106 ITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIA-QLVNENKIEPLKVLDISASHG 177 (335)
T ss_dssp HHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHH-HHHTC--CCCSEEEEETCTTC
T ss_pred hHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHH-HhcccccCCCCEEEEECCCcC
Confidence 7899999999999987 4453 3 888888999999999999988776677788 888721177889999999999
Q ss_pred HHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH-------------HHHHHH
Q 043533 162 SFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF-------------KILKKR 219 (301)
Q Consensus 162 ~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~-------------~iL~~~ 219 (301)
.++..+++++|+.+++++|++.+++.+++ .+||+++.+|+++ ++|. ||+|++ ++|+++
T Consensus 178 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~ 257 (335)
T 2r3s_A 178 LFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKI 257 (335)
T ss_dssp HHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHH
Confidence 99999999999999999999988887764 3579999999998 6776 998887 899999
Q ss_pred HHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcccc-CCccCCHHHHHHHHHhCCCceeEEEecCCceeEEE
Q 043533 220 REAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA-TGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIE 298 (301)
Q Consensus 220 ~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~ 298 (301)
+++|+| ||+++|+|...++....+ .....+++.|+... +++.++.++|+++++++||+.+++.++.+..++|+
T Consensus 258 ~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~ 331 (335)
T 2r3s_A 258 KTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVI 331 (335)
T ss_dssp HHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEE
T ss_pred HHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEE
Confidence 999999 999999999887654332 12456777777665 78899999999999999999999999887778777
Q ss_pred Ee
Q 043533 299 VY 300 (301)
Q Consensus 299 a~ 300 (301)
++
T Consensus 332 ~~ 333 (335)
T 2r3s_A 332 VA 333 (335)
T ss_dssp EE
T ss_pred Ee
Confidence 75
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=282.66 Aligned_cols=266 Identities=16% Similarity=0.230 Sum_probs=221.0
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e-ecCCCeEEcChhcc-hhhcCCCCChhhhhhhhcCccc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V-NGQEEAYGLTAAST-LLIKDKPYCLSPTVSVFVDPFF 82 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v-e~~~~~y~~t~~s~-~L~~~~~~~l~~~~~~~~~~~~ 82 (301)
++||||++|.+ |+|++|||+++|++++.++ + ++.+++|.+|+.++ +|.+++|.+++.++.+. ...
T Consensus 45 ~~lgif~~l~~-~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~ 121 (352)
T 3mcz_A 45 VADKLFDLTQT-GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQ 121 (352)
T ss_dssp HHTTHHHHTTS-CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTT
T ss_pred HHCChHHHhCC-CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecCCeeecCHHHHhhccCCChhhHHHHHHHh--HHH
Confidence 69999999986 9999999999999999987 1 45568999999998 78888888999888765 356
Q ss_pred hhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccC-CCeEEEecCCcc
Q 043533 83 VAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEG-LGSLVDVGGGNV 161 (301)
Q Consensus 83 ~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~-~~~vlDvGgG~G 161 (301)
++.|.+|++++++|.+..|+.. .++..+|+..+.|..+|...... ...++ +.++ +.+ ..+|||||||+|
T Consensus 122 ~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l-~~~~--~~~~~~~vlDvG~G~G 191 (352)
T 3mcz_A 122 WDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVV-SELG--VFARARTVIDLAGGHG 191 (352)
T ss_dssp TTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHH-HTCG--GGTTCCEEEEETCTTC
T ss_pred HHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHH-HhCC--CcCCCCEEEEeCCCcC
Confidence 8999999999999986544322 23457899999999999873222 23678 8887 666 899999999999
Q ss_pred HHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-C--CCc-chhHHH-------------HHHH
Q 043533 162 SFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-F--IPP-ANAFLF-------------KILK 217 (301)
Q Consensus 162 ~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~--~p~-~D~i~~-------------~iL~ 217 (301)
.++..+++++|+++++++|+|++++.+++ .+||+++.+|+++ + .|. ||+|++ ++|+
T Consensus 192 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~ 271 (352)
T 3mcz_A 192 TYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIG 271 (352)
T ss_dssp HHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHH
Confidence 99999999999999999999988887764 3689999999998 4 566 999887 8999
Q ss_pred HHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCccCCHHHHHHHHHhCCCceeEEEecCCceeE
Q 043533 218 KRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDAVFSHYKITPIFGMKSL 296 (301)
Q Consensus 218 ~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ 296 (301)
+++++|+| ||+++|+|...++....+ .....+|+.|+.. .+|+.||.++|+++|+++||++++.. .+...+
T Consensus 272 ~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l 343 (352)
T 3mcz_A 272 HAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTL 343 (352)
T ss_dssp HHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEE
T ss_pred HHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEE
Confidence 99999999 999999999988775543 2245788888765 47889999999999999999999843 355888
Q ss_pred EEEeC
Q 043533 297 IEVYP 301 (301)
Q Consensus 297 i~a~~ 301 (301)
++++|
T Consensus 344 ~~a~k 348 (352)
T 3mcz_A 344 LIGQR 348 (352)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88875
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=281.40 Aligned_cols=262 Identities=20% Similarity=0.340 Sum_probs=221.7
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e-ecCCCeEEcChhc-chhhcCCC---CChhhhhhhhcC
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V-NGQEEAYGLTAAS-TLLIKDKP---YCLSPTVSVFVD 79 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v-e~~~~~y~~t~~s-~~L~~~~~---~~l~~~~~~~~~ 79 (301)
++||||+.|.++|+|++|||+++|++++.++ + ++.+++|.+|+.+ ++|++++| .++++++.+. .
T Consensus 52 ~~lgif~~L~~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~ 130 (359)
T 1x19_A 52 IELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-A 130 (359)
T ss_dssp HHHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-H
T ss_pred HHcCcHHHHcCCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeCCeEecCHHHHHHhcCCCCCccccHHHHHHHH-H
Confidence 6999999999899999999999999999887 1 4456799999975 48999888 7899988876 3
Q ss_pred ccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCch---HHHHHHHHhhcccc-cchHHHHHhhhhhcccCCCeEEE
Q 043533 80 PFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPA---INQRFNEAMASDSE-IMTSFVVKSECKQIFEGLGSLVD 155 (301)
Q Consensus 80 ~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~---~~~~f~~am~~~~~-~~~~~~~~~~~~~~~~~~~~vlD 155 (301)
...++.|.+|++++++|.+ |+|+..+|+ ..+.|..+|...+. ...+.++ +.++ +.+..+|||
T Consensus 131 ~~~~~~~~~L~~~l~~g~~-----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~-~~~~--~~~~~~vLD 196 (359)
T 1x19_A 131 FLADDFYMGLSQAVRGQKN-----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLL-EEAK--LDGVKKMID 196 (359)
T ss_dssp HHHHHTGGGHHHHHTTSCC-----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHH-HHCC--CTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCC-----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHH-HhcC--CCCCCEEEE
Confidence 5678999999999999863 567778888 99999999999887 7778888 8887 778899999
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH-------------H
Q 043533 156 VGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF-------------K 214 (301)
Q Consensus 156 vGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~-------------~ 214 (301)
||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++ ++|.+|+|++ +
T Consensus 197 vG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~ 276 (359)
T 1x19_A 197 VGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTI 276 (359)
T ss_dssp ESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHH
T ss_pred ECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHH
Confidence 99999999999999999999999999999888763 4679999999998 6766788876 8
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCcc----CCHHHHHHHHHhCCCceeEEEe
Q 043533 215 ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKE----RTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 215 iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~----rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
+|++++++|+| ||+++|+|...++. ..+ .....+ .|+.. .+|++ ++.++|+++|+++||+.+++.+
T Consensus 277 ~l~~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 347 (359)
T 1x19_A 277 MCKKAFDAMRS---GGRLLILDMVIDDP-ENP---NFDYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVR 347 (359)
T ss_dssp HHHHHHTTCCT---TCEEEEEEECCCCT-TSC---CHHHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhcCC---CCEEEEEecccCCC-CCc---hHHHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEe
Confidence 89999999999 99999999988765 222 112223 44433 34667 9999999999999999999998
Q ss_pred cCCceeEEEEeC
Q 043533 290 IFGMKSLIEVYP 301 (301)
Q Consensus 290 ~~~~~~~i~a~~ 301 (301)
++ ..++|+++|
T Consensus 348 ~~-~~~vi~a~k 358 (359)
T 1x19_A 348 KY-DHLLVQAVK 358 (359)
T ss_dssp ET-TEEEEEEEC
T ss_pred cC-CceEEEEeC
Confidence 87 789999986
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=152.36 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=109.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF--PGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~--P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~-- 213 (301)
.++..+|||||||+|.++..|++++ |+++++++|+ +.|++.|++ ..+|+++.+|+.+ +++.+|+|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4667899999999999999999985 6889999999 999988864 4689999999987 7777888776
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhc---c-----------ccCCccC
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS---V-----------NATGKER 268 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~---~-----------~~~g~~r 268 (301)
.+|++++++|+| ||++++.|...+.+........ ....++... . ..--...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLF-NMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHHHH-HHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 689999999999 9999999988776543221100 000110000 0 0001346
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 269 TESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 269 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
|.+++.++|++|||+.++++.-.....-+.|+|
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 899999999999999998764333233344654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=138.91 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=111.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc-chhHHH-------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-ANAFLF------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-~D~i~~------- 213 (301)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. ||+|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4568999999999999999999999999999999 888877664 3489999999987 5555 999887
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhh------c-----hhh-cc-ccCCccCCHHHHH
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLF------D-----IVM-SV-NATGKERTESEWA 274 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~------d-----~~~-~~-~~~g~~rt~~e~~ 274 (301)
.+|++++++|+| ||.+++.+...+.......... .... . +.. +. ......++.+++.
T Consensus 123 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLNK-TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHHH-HHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHHH-HHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 489999999999 9999999987765432210000 0000 0 000 00 0223457899999
Q ss_pred HHHHhCCCceeEEEecCCceeEEEEe
Q 043533 275 KLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
++|++|||+.+++.......+++..+
T Consensus 199 ~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp HHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCceeeeeeecceeEEEEE
Confidence 99999999999998776556666554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=141.06 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=105.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
....+|||||||+|.++..+++.+| +++++|+ +.+++.+++ ..+++++.+|+.+ +++. +|+|++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3468999999999999999999987 8999999 888888765 3789999999987 6653 898775
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh---hhhhhchhhccccC------------------
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE---TKFLFDIVMSVNAT------------------ 264 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~---~~~~~d~~~~~~~~------------------ 264 (301)
.+|++++++|+| ||.+++.+...+...... ... ....+...++....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 899999999999 899988876432211100 000 00000000000000
Q ss_pred CccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 265 GKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 265 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
...++ .+|.++|+++||+.+++..+.....+|+.+|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 11122 4899999999999999999977788999876
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=132.52 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=116.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~ 205 (301)
...++ +.++ .....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 26 ~~~~~-~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 102 (219)
T 3dh0_A 26 PEKVL-KEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL 102 (219)
T ss_dssp HHHHH-HHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS
T ss_pred HHHHH-HHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC
Confidence 34566 6666 6777899999999999999999996 8899999999 888887764 2589999999987 66
Q ss_pred Cc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 206 PP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 206 p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
+. ||+|++ .+|++++++|+| ||.+++.+.........+ .....++.++
T Consensus 103 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 103 PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 54 999887 899999999999 899999886554432211 0011358999
Q ss_pred HHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 273 WAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
|.++++++||+++++.........+.+++
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999988877666666654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-17 Score=136.46 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=109.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
..++ +.++ ..+. +|||||||+|.++..++++ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 34 ~~~~-~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 34 ENII-NRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHH-HHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHH-HhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 4445 5444 3433 9999999999999999999 8899999999 888887764 3589999999988 666
Q ss_pred c--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh-hh-hhhchhhccccCCccCCHH
Q 043533 207 P--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE-TK-FLFDIVMSVNATGKERTES 271 (301)
Q Consensus 207 ~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~-~~-~~~d~~~~~~~~g~~rt~~ 271 (301)
. ||+|++ .+|+++++.|+| ||.+++.+...+...... +.. .. ....+..........++.+
T Consensus 109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWEDVATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENVE 184 (219)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHHH
T ss_pred cccccEEEECchHhhccCHHHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCHH
Confidence 4 999887 899999999999 899888875443321110 000 00 0001111101123345889
Q ss_pred HHHHHHHhCCCceeEEEecCCceeEEE
Q 043533 272 EWAKLFFDAVFSHYKITPIFGMKSLIE 298 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~~~~~~~~i~ 298 (301)
+|.++|+++||+.+++........++.
T Consensus 185 ~~~~~l~~aGf~~v~~~~~~~~~~~~~ 211 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILGDEGFWIII 211 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEecCCceEEEE
Confidence 999999999999999987765444443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.3e-16 Score=134.88 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=110.8
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
..++ +.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~-~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 51 DEMI-ALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHH-HHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHH-HhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 4466 6665 6677899999999999999999987 689999999 888877764 3589999999987 666
Q ss_pred c--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 207 P--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 207 ~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
. ||+|++ .+|++++++|+| ||++++.+.......... ....++........+..++.++|
T Consensus 127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 199 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDRGRALREMARVLRP---GGTVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDEY 199 (273)
T ss_dssp TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHHH
T ss_pred CCCccEEEEechhhhCCCHHHHHHHHHHHcCC---CeEEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHHH
Confidence 4 999886 899999999999 999999998765433221 01111111111134557899999
Q ss_pred HHHHHhCCCceeEEEec
Q 043533 274 AKLFFDAVFSHYKITPI 290 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~~ 290 (301)
.++++++||+++++...
T Consensus 200 ~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 200 ESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHTTCEEEEEEEC
T ss_pred HHHHHHcCCeEEEEEEC
Confidence 99999999999988765
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-16 Score=135.77 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=106.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc-chhHHH---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP-ANAFLF--------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~-~D~i~~--------- 213 (301)
.++..+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. ||+|++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4556899999999999999999885 47999999 889888876 5689999999987 5555 887764
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh------------hhh--------hhhhhchhhcccc-C--
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE------------LTE--------TKFLFDIVMSVNA-T-- 264 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~------------~~~--------~~~~~d~~~~~~~-~-- 264 (301)
.+|++++++|+| ||.+++.+...+....... +.. ....+++.++... +
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 779999999999 8877775433332111000 000 0001122222111 1
Q ss_pred ---------CccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 265 ---------GKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 265 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
.+.+|.+||.++|+++||+++++...++...+++++|
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2356899999999999999999987777677777764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=132.40 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=107.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc-chhHHH----------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP-ANAFLF---------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~-~D~i~~---------- 213 (301)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ .++++++.+|+.+ +.+. +|+|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999976 8999999 889888875 4679999999987 5554 898882
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh------------hh--------hhhhhchhhcccc-CC--
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL------------TE--------TKFLFDIVMSVNA-TG-- 265 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~------------~~--------~~~~~d~~~~~~~-~g-- 265 (301)
.+|++++++|+| ||.+++.+...++....... .. ......+.++... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 889999999999 88887766544432211000 00 0001112222111 11
Q ss_pred ---------ccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 266 ---------KERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 266 ---------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
+.+|.++|+++|+++||+++.+....+...+++|+|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 357999999999999998777766666788888875
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-16 Score=134.13 Aligned_cols=149 Identities=11% Similarity=0.214 Sum_probs=110.0
Q ss_pred hcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCC
Q 043533 128 ASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGD 200 (301)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D 200 (301)
...+......++ +.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|
T Consensus 19 ~~~~~~~~~~l~-~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d 93 (260)
T 1vl5_A 19 IHAKGSDLAKLM-QIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD 93 (260)
T ss_dssp ----CCCHHHHH-HHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred cccCHHHHHHHH-HHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEec
Confidence 333334456677 7766 66788999999999999999999875 8999999 888887764 2679999999
Q ss_pred CCC-CCCc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhch-hhccc-cC
Q 043533 201 MLR-FIPP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-AT 264 (301)
Q Consensus 201 ~~~-~~p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~-~~~~~-~~ 264 (301)
+.+ ++++ ||+|++ .+|++++++|+| ||++++.+...+...... ..+.. ..+.. ..
T Consensus 94 ~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 164 (260)
T 1vl5_A 94 AEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKK---GGQLLLVDNSAPENDAFD------VFYNYVEKERDYSH 164 (260)
T ss_dssp C-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEEEBCSSHHHH------HHHHHHHHHHCTTC
T ss_pred HHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCCHHHH------HHHHHHHHhcCccc
Confidence 987 7764 999887 899999999999 899999888766542211 11111 11111 12
Q ss_pred CccCCHHHHHHHHHhCCCceeEEEec
Q 043533 265 GKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 265 g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
...++.++|.++|+++||+++.+...
T Consensus 165 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 165 HRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 34678999999999999998877654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=135.62 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=112.0
Q ss_pred hhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEe
Q 043533 127 MASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIA 198 (301)
Q Consensus 127 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~ 198 (301)
+..........++ +.++ .+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.
T Consensus 97 ~~~~~~~~~~~l~-~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 173 (312)
T 3vc1_A 97 LHRLESAQAEFLM-DHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRV 173 (312)
T ss_dssp HHHHHHHHHHHHH-TTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred hhhHHHHHHHHHH-HHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 3333333334456 5554 25567899999999999999999986 679999999 888887764 36899999
Q ss_pred CCCCC-CCCc--chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCC
Q 043533 199 GDMLR-FIPP--ANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 265 (301)
Q Consensus 199 ~D~~~-~~p~--~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 265 (301)
+|+.+ +++. ||+|++ .+|++++++|+| ||++++.+.......... ......++.... .
T Consensus 174 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~----~ 244 (312)
T 3vc1_A 174 CNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAHFE----C 244 (312)
T ss_dssp CCTTSCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHHHT----C
T ss_pred CChhcCCCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhhhc----C
Confidence 99987 6663 999876 899999999999 999999987766543211 001111111111 1
Q ss_pred ccCCHHHHHHHHHhCCCceeEEEec
Q 043533 266 KERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 266 ~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
..++.++|.++++++||+++++..+
T Consensus 245 ~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 245 NIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 3678999999999999999998775
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=128.95 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=109.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCc-chh
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FIPP-ANA 210 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~p~-~D~ 210 (301)
..++ +.+. .....+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. ||+
T Consensus 35 ~~~l-~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~ 109 (220)
T 3hnr_A 35 EDIL-EDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDT 109 (220)
T ss_dssp HHHH-HHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSE
T ss_pred HHHH-HHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEE
Confidence 3456 5555 456789999999999999999998 579999999 888887765 2489999999987 5555 999
Q ss_pred HHH-----------H--HHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc--cCCccCCHHHHHH
Q 043533 211 FLF-----------K--ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--ATGKERTESEWAK 275 (301)
Q Consensus 211 i~~-----------~--iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~g~~rt~~e~~~ 275 (301)
|++ . +|++++++|+| ||.+++.+...+...................... .....++.++|.+
T Consensus 110 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (220)
T 3hnr_A 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQT 186 (220)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHH
T ss_pred EEECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHH
Confidence 887 3 99999999999 9999999865544322110000000000000000 1112458999999
Q ss_pred HHHhCCCceeEEEecCCceeEEEEe
Q 043533 276 LFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 276 ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
+|+++||+++.+... ....++.+.
T Consensus 187 ~l~~aGf~v~~~~~~-~~~w~~~~~ 210 (220)
T 3hnr_A 187 IFENNGFHVTFTRLN-HFVWVMEAT 210 (220)
T ss_dssp HHHHTTEEEEEEECS-SSEEEEEEE
T ss_pred HHHHCCCEEEEeecc-ceEEEEeeh
Confidence 999999987766554 456666654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=133.80 Aligned_cols=144 Identities=16% Similarity=0.228 Sum_probs=109.2
Q ss_pred hHHHHHhhhhh--cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-
Q 043533 135 TSFVVKSECKQ--IFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR- 203 (301)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~- 203 (301)
...++ +.++| .+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 67 ~~~l~-~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 67 DEWLA-SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHH-HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHH-HHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 34566 66611 15677899999999999999999986 469999999 888887764 3689999999988
Q ss_pred CCCc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 204 FIPP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 204 ~~p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
+++. ||+|++ .+|++++++|+| ||++++.+...+...... .....+... ......+.
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~ 214 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSL 214 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCH
T ss_pred CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCH
Confidence 7664 999887 889999999999 999999998766543321 111111111 11234689
Q ss_pred HHHHHHHHhCCCceeEEEec
Q 043533 271 SEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+|.++++++||+++++..+
T Consensus 215 ~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 215 GLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEEEC
Confidence 99999999999999988765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=130.51 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=107.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
..++ +.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~-~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 101 (256)
T 1nkv_A 26 ATLG-RVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101 (256)
T ss_dssp HHHH-HHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHH-HhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence 4455 5555 6677899999999999999999998 679999999 888887764 3689999999987 454
Q ss_pred c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 207 P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 207 ~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
. ||+|++ ++|++++++|+| ||++++.+...........+ ...+ ........++..+|.
T Consensus 102 ~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~ 171 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGGFAGAEELLAQSLKP---GGIMLIGEPYWRQLPATEEI---AQAC----GVSSTSDFLTLPGLV 171 (256)
T ss_dssp SCEEEEEEESCGGGTSSSHHHHHHHTTSEEE---EEEEEEEEEEETTCCSSHHH---HHTT----TCSCGGGSCCHHHHH
T ss_pred CCCCEEEECCChHhcCCHHHHHHHHHHHcCC---CeEEEEecCcccCCCChHHH---HHHH----hcccccccCCHHHHH
Confidence 4 999886 889999999999 99999998876554332101 1001 001112457999999
Q ss_pred HHHHhCCCceeEEEec
Q 043533 275 KLFFDAVFSHYKITPI 290 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~ 290 (301)
++|+++||+.+++...
T Consensus 172 ~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 172 GAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHTTTBCCCEEEEC
T ss_pred HHHHHCCCeeEEEEeC
Confidence 9999999999887543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=124.23 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=102.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCCc--ch
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLRFIPP--AN 209 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~~~p~--~D 209 (301)
...++ +.+. .+....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+..+. ||
T Consensus 34 ~~~~~-~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D 109 (218)
T 3ou2_A 34 APAAL-ERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWD 109 (218)
T ss_dssp HHHHH-HHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEE
T ss_pred HHHHH-HHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCcee
Confidence 34455 5554 2455679999999999999999999 569999999 888888775 37899999999875443 99
Q ss_pred hHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcccc-----CCccCCHH
Q 043533 210 AFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA-----TGKERTES 271 (301)
Q Consensus 210 ~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~g~~rt~~ 271 (301)
+|++ .+|++++++|+| ||.+++.+...+.......+.......-..++... .....+.+
T Consensus 110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (218)
T 3ou2_A 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPA 186 (218)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHH
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHH
Confidence 8886 789999999999 89999988755332211100000000000001000 12246999
Q ss_pred HHHHHHHhCCCceeEEEecC
Q 043533 272 EWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~~~ 291 (301)
+|.++|+++||++......+
T Consensus 187 ~~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 187 ELTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHHCCCEEEeeeccc
Confidence 99999999999955544444
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=129.17 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=107.4
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~ 207 (301)
.++ +.+. .+.+..+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 36 ~~l-~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 36 KAV-SFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHH-TTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred HHH-HHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence 344 4443 2556779999999999999999999986 9999999 888887764 4679999999977 6653
Q ss_pred --chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHH
Q 043533 208 --ANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 275 (301)
Q Consensus 208 --~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ 275 (301)
||+|++ .+|++++++|+| ||++++.+.......... .....+.- .....++.++|.+
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~ 181 (257)
T 3f4k_A 113 EELDLIWSEGAIYNIGFERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---EIEDFWMD-----AYPEISVIPTCID 181 (257)
T ss_dssp TCEEEEEEESCSCCCCHHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---HHHHHHHH-----HCTTCCBHHHHHH
T ss_pred CCEEEEEecChHhhcCHHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---HHHHHHHH-----hCCCCCCHHHHHH
Confidence 999986 899999999999 999999987655433221 01111111 1122568999999
Q ss_pred HHHhCCCceeEEEecC
Q 043533 276 LFFDAVFSHYKITPIF 291 (301)
Q Consensus 276 ll~~aGf~~~~~~~~~ 291 (301)
+|+++||+++.+...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987664
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=133.37 Aligned_cols=141 Identities=13% Similarity=0.246 Sum_probs=104.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
+....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++. ||+|++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56678999999999999999999999999999999 888887764 3589999999987 6654 999887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh--hccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV--MSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
.+|++++++|+| ||.+++.+.........+........+... .....++..++..++.++|+++||+
T Consensus 115 l~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCE
T ss_pred hhhcCCHHHHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCC
Confidence 899999999999 899999885432211111000001111111 1112345567788999999999999
Q ss_pred eeEEEec
Q 043533 284 HYKITPI 290 (301)
Q Consensus 284 ~~~~~~~ 290 (301)
++++...
T Consensus 192 ~v~~~~~ 198 (276)
T 3mgg_A 192 KIRVEPR 198 (276)
T ss_dssp EEEEEEE
T ss_pred eEEEeeE
Confidence 9988754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=129.82 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=108.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
..++ +.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 45 ~~~~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 45 KKIL-SDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHT-TTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTC
T ss_pred HHHH-HhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCc
Confidence 4455 5554 5667899999999999999999987 789999999 888877764 2789999999988 6664
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ .+|++++++|+| ||.+++.+...+....-. ..+... ....+...++.++|.
T Consensus 121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~ 190 (266)
T 3ujc_A 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD------DEFKEY-VKQRKYTLITVEEYA 190 (266)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC------HHHHHH-HHHHTCCCCCHHHHH
T ss_pred EEEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch------HHHHHH-HhcCCCCCCCHHHHH
Confidence 998887 789999999999 999999988766522110 011100 111233467999999
Q ss_pred HHHHhCCCceeEEEec
Q 043533 275 KLFFDAVFSHYKITPI 290 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~ 290 (301)
++++++||+++++...
T Consensus 191 ~~l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 191 DILTACNFKNVVSKDL 206 (266)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCeEEEEEeC
Confidence 9999999999988765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=130.62 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=105.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~-- 213 (301)
+.+..+|||||||+|.++..+++. |..+++++|+ +.+++.+++ .++++++.+|+.+ +++. ||+|++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 566789999999999999999998 8889999999 888887764 3789999999987 6654 999886
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+|++++++|+| ||.+++.+............ ...+. ......++..++.++++++||+++
T Consensus 123 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 123 AIYNIGFERGLNEWRKYLKK---GGYLAVSECSWFTDERPAEI---NDFWM-----DAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp CGGGTCHHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCHHH---HHHHH-----HHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred CceecCHHHHHHHHHHHcCC---CCEEEEEEeeecCCCChHHH---HHHHH-----HhCCCCCCHHHHHHHHHHCCCEEE
Confidence 899999999999 99999999876544332211 11110 011235689999999999999999
Q ss_pred EEEecC
Q 043533 286 KITPIF 291 (301)
Q Consensus 286 ~~~~~~ 291 (301)
++..++
T Consensus 192 ~~~~~~ 197 (267)
T 3kkz_A 192 ATFILP 197 (267)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 988765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=134.89 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=107.7
Q ss_pred ccCCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIIS-EAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~-- 213 (301)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++. ||+|++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4667899999999999999996 6789999999999 888887764 3569999999987 5555 998887
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhh--hh-h---hhhc--hhhcccc-CCccCCHH
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH-ELT--ET-K---FLFD--IVMSVNA-TGKERTES 271 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~--~~-~---~~~d--~~~~~~~-~g~~rt~~ 271 (301)
.+|++++++|+| ||.+++.+...+...... .+. .. . .... +...... ....++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 479999999999 898888776544322110 000 00 0 0000 0000001 11347999
Q ss_pred HHHHHHHhCCCceeEEEecC-CceeEEEEeC
Q 043533 272 EWAKLFFDAVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
++.++|+++||+++++.... .....+.|+|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999999998653 3445566654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=124.81 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=101.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--chhHHH------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--ANAFLF------ 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D~i~~------ 213 (301)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 455689999999999999999998 568999999 888887765 5789999999987 6654 999887
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
.+|++++++|+| ||.+++.+.......... .....+. .......++..++.++++++||+++++.
T Consensus 129 ~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKS---DGYACIAILGPTAKPREN---SYPRLYG----KDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SSCHHHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG---GGGGGGT----CCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCHHHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh---hhhhhcc----ccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 899999999999 888888775333222111 0011111 1123345789999999999999999987
Q ss_pred ec
Q 043533 289 PI 290 (301)
Q Consensus 289 ~~ 290 (301)
.+
T Consensus 199 ~~ 200 (242)
T 3l8d_A 199 GV 200 (242)
T ss_dssp EE
T ss_pred cc
Confidence 65
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=133.26 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=107.4
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCeEEEeCCCCC-
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----A----DNLKYIAGDMLR- 203 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~----~ri~~~~~D~~~- 203 (301)
...++ +.++ ....+|||||||+|.++..++++ +.+++++|+ +.+++.+++ . .+++++.+|+.+
T Consensus 72 ~~~~~-~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 72 AREFA-TRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHH-HHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHH-HhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 44455 5554 33459999999999999999988 578999999 889888875 2 789999999988
Q ss_pred CCCc-chhHHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-----hhhh-hhh---------
Q 043533 204 FIPP-ANAFLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH-----ELTE-TKF--------- 253 (301)
Q Consensus 204 ~~p~-~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-----~~~~-~~~--------- 253 (301)
+.+. ||+|++ .+|++++++|+| ||++++.....+.....+ .+.. ...
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 222 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHL 222 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEe
Confidence 6665 996653 889999999999 888777655332210000 0000 000
Q ss_pred ----hhchhhccc-----------cCCccCCHHHHHHHHHhCCCceeEEEecCC------ceeEEEEeC
Q 043533 254 ----LFDIVMSVN-----------ATGKERTESEWAKLFFDAVFSHYKITPIFG------MKSLIEVYP 301 (301)
Q Consensus 254 ----~~d~~~~~~-----------~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~------~~~~i~a~~ 301 (301)
...+.+... ..-+.+|.++|.++|+++||+++++..+.. ...+|||.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 223 PAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred ccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 000000000 011246999999999999999999988752 246777753
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=127.69 Aligned_cols=141 Identities=13% Similarity=0.237 Sum_probs=107.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~ 207 (301)
..++ +.++ .....+|||||||+|.++..+++.++ +++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 11 ~~~~-~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 11 GLMI-KTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHH-HHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred chHH-HHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 3455 6666 77789999999999999999999875 8999999 888887764 2689999999977 6654
Q ss_pred --chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhch-hhccc-cCCccCCHHH
Q 043533 208 --ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-ATGKERTESE 272 (301)
Q Consensus 208 --~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~-~~~~~-~~g~~rt~~e 272 (301)
||+|++ .+|++++++|+| ||.+++.+...+..... ..++.. ..+.. .....++.++
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 156 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQ---DGRFLLVDHYAPEDPVL------DEFVNHLNRLRDPSHVRESSLSE 156 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHH------HHHHHHHHHHHCTTCCCCCBHHH
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCC---CcEEEEEEcCCCCChhH------HHHHHHHHHhccccccCCCCHHH
Confidence 999886 899999999999 89999998876654211 111111 11111 1235679999
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
|.++|+++||+.+++...
T Consensus 157 ~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 157 WQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCcEEEEEee
Confidence 999999999998887654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-15 Score=135.35 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=103.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCeEEEeCCCCC-------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPEA--------------DNLKYIAGDMLR------- 203 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~--------------~ri~~~~~D~~~------- 203 (301)
.....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++|+.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3456899999999999999999986 8899999999 8888877642 699999999976
Q ss_pred CCCc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 204 FIPP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 204 ~~p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
+++. ||+|++ .+|++++++|+| ||.+++.+.......... ...+........+..++.
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 231 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGALYL 231 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCCBH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCCCH
Confidence 5554 999987 899999999999 899999887665433221 111111122233456789
Q ss_pred HHHHHHHHhCCCceeEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~ 289 (301)
++|.++|+++||+.+++..
T Consensus 232 ~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 232 EDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHCCCceEEEEe
Confidence 9999999999999886644
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-15 Score=130.36 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=101.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~---- 213 (301)
..+..+|||||||+|.++..+++.+|+ .+++++|+ |.+++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 566789999999999999999999995 89999999 888876654 3489999999987 6665 999887
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeee-----C---CCccchhhhhhhhhhchhh--ccccCCccCCHHHHHHH
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVI-----N---AEEEEHELTETKFLFDIVM--SVNATGKERTESEWAKL 276 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~-----~---~~~~~~~~~~~~~~~d~~~--~~~~~g~~rt~~e~~~l 276 (301)
.+|++++++|+| ||.+++.++.. . ++...+.......+..+.. ....+....+..++.++
T Consensus 100 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (284)
T 3gu3_A 100 LHMTTPETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 176 (284)
T ss_dssp GGCSSHHHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHH
T ss_pred hcCCCHHHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence 999999999999 99999988651 1 1111110000001111110 00123334566789999
Q ss_pred HHhCCCceeEEEec
Q 043533 277 FFDAVFSHYKITPI 290 (301)
Q Consensus 277 l~~aGf~~~~~~~~ 290 (301)
|+++||+.+++...
T Consensus 177 l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 177 LSELGVKNIECRVS 190 (284)
T ss_dssp HHHTTCEEEEEEEC
T ss_pred HHHcCCCeEEEEEc
Confidence 99999999987443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=125.14 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=101.0
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--chh
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--ANA 210 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D~ 210 (301)
+. +.++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++. ||+
T Consensus 36 l~-~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 36 LK-KMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HH-TTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HH-Hhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 44 4444 346789999999999999999999765 8999999 888887765 4789999999977 6653 999
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeC------------CCccchhhhhhhhhhch-----hhcc-
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVIN------------AEEEEHELTETKFLFDI-----VMSV- 261 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~------------~~~~~~~~~~~~~~~d~-----~~~~- 261 (301)
|++ .+|++++++|+| ||.+++...... .......+. ....++- .+..
T Consensus 112 v~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (253)
T 3g5l_A 112 VLSSLALHYIASFDDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHWP-VDRYFNESMRTSHFLGE 187 (253)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEEE-ECCTTCCCEEEEEETTE
T ss_pred EEEchhhhhhhhHHHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEEE-eccccccceEEEeeccc
Confidence 887 999999999999 888877643211 000000000 0000000 0000
Q ss_pred ccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 262 NATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 262 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
......+|.++|.++|+++||+++++...
T Consensus 188 ~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 188 DVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 01122359999999999999999998754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=126.27 Aligned_cols=147 Identities=10% Similarity=0.130 Sum_probs=107.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~ 207 (301)
..++ +.++ ..+..+|||||||+|.++..++++++ .+++++|+ +++++.+++ .++++++.+|+.+ +|.
T Consensus 54 ~~~~-~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 128 (287)
T 1kpg_A 54 DLAL-GKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE 128 (287)
T ss_dssp HHHH-TTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred HHHH-HHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC
Confidence 3456 5555 66678999999999999999997774 49999999 888887764 3689999999964 334
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch----hhh-hhhhhhchh-hccccCCcc
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH----ELT-ETKFLFDIV-MSVNATGKE 267 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~----~~~-~~~~~~d~~-~~~~~~g~~ 267 (301)
||+|++ .+|++++++|+| ||++++.+...+...... +.. ......++. .....++..
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 205 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence 898876 889999999999 999999988765432200 000 000111111 111245667
Q ss_pred CCHHHHHHHHHhCCCceeEEEec
Q 043533 268 RTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 268 rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
++.++|.++++++||+++++...
T Consensus 206 ~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 206 PSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCHHHHHHHHHhCCcEEEEEEeC
Confidence 89999999999999999998765
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-15 Score=120.30 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=106.1
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
++ +.++ ..+..+|||||||+|.++..+++.+. +++++|+ +.+++.+++ .++++++.+| .+++. ||+|++
T Consensus 9 ~~-~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 9 YL-PNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILF 81 (170)
T ss_dssp TH-HHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEE
T ss_pred HH-HhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEE
Confidence 45 5555 66678999999999999999999874 8999999 888887775 6799999999 44443 999887
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCC
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVF 282 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf 282 (301)
.+|+++++.|+| ||++++.+.........+. ....++.++|+++++ ||
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 82 ANSFHDMDDKQHVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp ESCSTTCSCHHHHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--TE
T ss_pred ccchhcccCHHHHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--Cc
Confidence 899999999999 8999998875544322210 011368999999999 99
Q ss_pred ceeEEEecCCceeEEEEe
Q 043533 283 SHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 283 ~~~~~~~~~~~~~~i~a~ 300 (301)
+++++.........+.++
T Consensus 141 ~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEECSSTTEEEEEEE
T ss_pred EEEEccCCCCceEEEEEe
Confidence 999999887655556554
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=120.78 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=101.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chhHHH-----------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANAFLF----------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~i~~----------- 213 (301)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++. ||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999998 558999999 888888876 6789999999987 6553 998887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
.+|++++++|+| ||.+++.....+.... + .. . ......++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~---~------~~-~---~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEP---M------YH-P---VATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEE---E------CC-S---SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhh---h------hc-h---hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 899999999999 8888887754333111 0 00 0 012235689999999999999999998775
Q ss_pred C-ceeEEE
Q 043533 292 G-MKSLIE 298 (301)
Q Consensus 292 ~-~~~~i~ 298 (301)
. ++..+.
T Consensus 184 ~~p~~~l~ 191 (203)
T 3h2b_A 184 RFPHAYLT 191 (203)
T ss_dssp TSSEEEEE
T ss_pred CCcchhhh
Confidence 4 444443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-15 Score=127.17 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=103.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
..++ +.++ .....+|||||||+|.++..+++++ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 83 ~~~l-~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T 1xtp_A 83 RNFI-ASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHH-HTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHH-Hhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCC
Confidence 3455 5554 4567899999999999999999887 567999999 888887764 2689999999977 6653
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ .+|++++++|+| ||.+++.+........ ..+. ......++.++|.
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~ 222 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYK 222 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHH
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eecc----cCCcccCCHHHHH
Confidence 898876 889999999999 8999998864432211 0110 0122356999999
Q ss_pred HHHHhCCCceeEEEecC
Q 043533 275 KLFFDAVFSHYKITPIF 291 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~~ 291 (301)
++|+++||+++++....
T Consensus 223 ~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 223 RLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHTCCEEEEEECT
T ss_pred HHHHHCCCEEEEeeecC
Confidence 99999999999987653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=119.38 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=99.9
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--ch
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--AN 209 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D 209 (301)
.+. ..++ .....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. ||
T Consensus 34 ~l~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 34 ALR-AMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHH-HHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHH-Hhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 345 5555 44678999999999999999998843 38999999 888887764 3579999999987 6653 89
Q ss_pred hHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhh--h-------hhhhhc-----hhhcc-c
Q 043533 210 AFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELT--E-------TKFLFD-----IVMSV-N 262 (301)
Q Consensus 210 ~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~--~-------~~~~~d-----~~~~~-~ 262 (301)
+|++ .+|++++++|+| ||++++.......... ...+. . ....+. ...+. .
T Consensus 110 ~v~~~~~l~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 110 LAYSSLALHYVEDVARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred EEEEeccccccchHHHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 8887 899999999999 8888886642110000 00000 0 000000 00000 0
Q ss_pred cCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 263 ATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.....+|.++|.++|+++||+++++...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 1122368999999999999999998764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=128.33 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=98.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F-IPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~-~p~--~D~i~~--- 213 (301)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ + ++. ||+|++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999988 679999999 888888774 2789999999987 4 343 999887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhh-hhhhhhchh----hccccCCccCCHHHHHHHHHhC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELT-ETKFLFDIV----MSVNATGKERTESEWAKLFFDA 280 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~-~~~~~~d~~----~~~~~~g~~rt~~e~~~ll~~a 280 (301)
.+|++++++|+| ||.+++.+............. ......... .........++.+++.++|+++
T Consensus 146 l~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred hhcccCHHHHHHHHHHHcCC---CeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 899999999999 888888765332211110000 000000000 0000123457899999999999
Q ss_pred CCceeEEEecCC
Q 043533 281 VFSHYKITPIFG 292 (301)
Q Consensus 281 Gf~~~~~~~~~~ 292 (301)
||+++++..+..
T Consensus 223 Gf~v~~~~~~~~ 234 (285)
T 4htf_A 223 GWQIMGKTGVRV 234 (285)
T ss_dssp TCEEEEEEEESS
T ss_pred CCceeeeeeEEE
Confidence 999999887643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=124.29 Aligned_cols=144 Identities=11% Similarity=0.010 Sum_probs=101.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc-chhH
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP-ANAF 211 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~-~D~i 211 (301)
..++ +.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. ||+|
T Consensus 23 ~~l~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 99 (259)
T 2p35_A 23 RDLL-AQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLL 99 (259)
T ss_dssp HHHH-TTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEE
T ss_pred HHHH-HhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEE
Confidence 3456 5555 56678999999999999999999999999999999 888888765 5789999999987 5223 9998
Q ss_pred HH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh-cc---ccCCccCCHHHHHHH
Q 043533 212 LF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-SV---NATGKERTESEWAKL 276 (301)
Q Consensus 212 ~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~g~~rt~~e~~~l 276 (301)
++ .+|++++++|+| ||.+++.............+........+.- +. ......++.++|.++
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 100 YANAVFQWVPDHLAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp EEESCGGGSTTHHHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred EEeCchhhCCCHHHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 87 899999999999 8988887753222111100000000000100 00 012345789999999
Q ss_pred HHhCCCcee
Q 043533 277 FFDAVFSHY 285 (301)
Q Consensus 277 l~~aGf~~~ 285 (301)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-14 Score=123.87 Aligned_cols=127 Identities=18% Similarity=0.273 Sum_probs=95.8
Q ss_pred CCCeEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC------------CC--
Q 043533 149 GLGSLVDVGGGN---VSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRF------------IP-- 206 (301)
Q Consensus 149 ~~~~vlDvGgG~---G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~------------~p-- 206 (301)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.+++ .++++++.+|++++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888999999999999 999988874 47899999999752 22
Q ss_pred cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 207 PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 207 ~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
.+|+|++ .+|++++++|+| ||+|++.+...+. ... . ....+...........|+.+|+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LPA-Q---QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CHH-H---HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hHH-H---HHHHHHHHhcCCCCccCCHHHH
Confidence 3676664 899999999999 9999998876532 111 1 1122221111123567899999
Q ss_pred HHHHHhCCCceeE
Q 043533 274 AKLFFDAVFSHYK 286 (301)
Q Consensus 274 ~~ll~~aGf~~~~ 286 (301)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998775
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-14 Score=125.97 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=109.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~ 207 (301)
..++ +.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ .++++++.+|+.+. +.
T Consensus 62 ~~~~-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 136 (302)
T 3hem_A 62 KLAL-DKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DE 136 (302)
T ss_dssp HHHH-HTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CC
T ss_pred HHHH-HHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CC
Confidence 3456 6555 66778999999999999999999987 89999999 888887764 35899999999654 44
Q ss_pred -chhHHH--------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh-----hhhhhchh-hc
Q 043533 208 -ANAFLF--------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE-----TKFLFDIV-MS 260 (301)
Q Consensus 208 -~D~i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~-----~~~~~d~~-~~ 260 (301)
||+|++ .+|++++++|+| ||++++.+...+.......... .....++. ..
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE 213 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHh
Confidence 887765 569999999999 9999998887664322110000 00001111 11
Q ss_pred cccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 261 VNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 261 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
...++..++.+++.++++++||+++.+....
T Consensus 214 ~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 214 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 2245678899999999999999999987764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=124.68 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=105.1
Q ss_pred cchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc-c
Q 043533 133 IMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP-A 208 (301)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~-~ 208 (301)
.....++ +.++ .....+|||||||+|.++..+++ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++. |
T Consensus 44 ~~~~~l~-~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~f 118 (279)
T 3ccf_A 44 QYGEDLL-QLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPL 118 (279)
T ss_dssp SSCCHHH-HHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCE
T ss_pred HHHHHHH-HHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCc
Confidence 3445567 6666 56678999999999999999998 7889999999 888887765 4689999999987 6655 9
Q ss_pred hhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh-hhhhhchhh--c-cc-cCCccCCHHH
Q 043533 209 NAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE-TKFLFDIVM--S-VN-ATGKERTESE 272 (301)
Q Consensus 209 D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~-~~~~~d~~~--~-~~-~~g~~rt~~e 272 (301)
|+|++ .+|++++++|+| ||++++....... . .. +.. ....+...- . .. .....++.++
T Consensus 119 D~v~~~~~l~~~~d~~~~l~~~~~~Lkp---gG~l~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 119 DAVFSNAMLHWVKEPEAAIASIHQALKS---GGRFVAEFGGKGN-I-KY-ILEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEECTTT-T-HH-HHHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred CEEEEcchhhhCcCHHHHHHHHHHhcCC---CcEEEEEecCCcc-h-HH-HHHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 99887 899999999999 8888776543221 1 11 100 000000000 0 00 1123568999
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999999887654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-14 Score=120.37 Aligned_cols=136 Identities=14% Similarity=0.177 Sum_probs=99.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCC-CCCc--chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLR-FIPP--ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~-~~p~--~D~i 211 (301)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.. +++. ||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 355789999999999999999998 679999999 877776653 2368999999987 6654 9988
Q ss_pred HH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-------c--------
Q 043533 212 LF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-------N-------- 262 (301)
Q Consensus 212 ~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-------~-------- 262 (301)
++ .+|++++++|+| ||++++.+......... +. .....++.... .
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--YR-KRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--HH-HHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--HH-HHhhhhccchhhhcceEecccccCCcc
Confidence 86 699999999999 89999988755332211 10 00011110000 0
Q ss_pred cCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 263 ATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.....++.++|+++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 0123579999999999999999987643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=120.72 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=97.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCCCCC-c-chhHHH---------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLRFIP-P-ANAFLF--------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~~~p-~-~D~i~~--------- 213 (301)
....+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ . ||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567899999999999999999876 6999999 888887765 2289999999977433 3 999887
Q ss_pred --HHHHHHH-HhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhh-c---hh--hccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 --KILKKRR-EAIASNGERGKVIIIDIVINAEEEEHELTETKFLF-D---IV--MSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 --~iL~~~~-~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~-d---~~--~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
.+|++++ ++|+| ||++++.++........ .......+ . +. .........++.+++.++|+++||++
T Consensus 119 ~~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 119 PVALLKRINDDWLAE---GGRLFLVCPNANAVSRQ--IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp HHHHHHHHHHTTEEE---EEEEEEEEECTTCHHHH--HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCC---CCEEEEEcCChHHHHHH--HHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence 8999999 99999 89888876532211000 00000000 0 00 00112234679999999999999999
Q ss_pred eEEEec
Q 043533 285 YKITPI 290 (301)
Q Consensus 285 ~~~~~~ 290 (301)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 988654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=119.75 Aligned_cols=128 Identities=15% Similarity=0.183 Sum_probs=97.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCc--chhHHH-------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR---FIPP--ANAFLF------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~---~~p~--~D~i~~------- 213 (301)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++. ||+|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999998 557999999 8888888754 9999999866 5554 999887
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
.+|++++++|+| ||.+++..... .... ...+.. ........++.+++.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~-~~~~--------~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNP-TSLY--------SLINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECT-TSHH--------HHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCc-chhH--------HHHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 899999999999 89888865431 1110 111111 1112334678999999999999999988
Q ss_pred EecC
Q 043533 288 TPIF 291 (301)
Q Consensus 288 ~~~~ 291 (301)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=121.47 Aligned_cols=143 Identities=12% Similarity=0.046 Sum_probs=102.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC----C-CC-c-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR----F-IP-P- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~----~-~p-~- 207 (301)
..++ +.+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+ + .+ .
T Consensus 42 ~~~~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 42 QAIL-LAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHH-HHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCC
T ss_pred HHHH-HHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCC
Confidence 3455 5555 455689999999999999999988 568999999 8899888877788888888754 1 22 3
Q ss_pred chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc------ccCCccCCHH
Q 043533 208 ANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV------NATGKERTES 271 (301)
Q Consensus 208 ~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~------~~~g~~rt~~ 271 (301)
||+|++ .+|++++++|+| ||.+++.+.......... +. ..+....... ......+|.+
T Consensus 117 fD~v~~~~~l~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 3e8s_A 117 YDLICANFALLHQDIIELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQ--DGWREESFAGFAGDWQPMPWYFRTLA 190 (227)
T ss_dssp EEEEEEESCCCSSCCHHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CS--CEEEEECCTTSSSCCCCEEEEECCHH
T ss_pred ccEEEECchhhhhhHHHHHHHHHHHhCC---CeEEEEEecCccccCccc-cc--cccchhhhhccccCcccceEEEecHH
Confidence 899887 899999999999 898888776443322211 00 0000000000 0112346999
Q ss_pred HHHHHHHhCCCceeEEEe
Q 043533 272 EWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~ 289 (301)
+|.++|+++||+++++..
T Consensus 191 ~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 191 SWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHcCCeEEEEec
Confidence 999999999999999875
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=121.13 Aligned_cols=141 Identities=11% Similarity=0.180 Sum_probs=104.3
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~ 210 (301)
...++ +.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..+++|+.+|+.+ +++. ||+
T Consensus 23 ~~~l~-~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~ 97 (261)
T 3ege_A 23 VNAII-NLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDG 97 (261)
T ss_dssp HHHHH-HHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSE
T ss_pred HHHHH-HHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeE
Confidence 34455 5555 56778999999999999999997 7889999999 9999999876699999999987 6664 999
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD 279 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~ 279 (301)
|++ .+|++++++|+ . |++++++...+..... +. ...+.. +........++.+++. +|++
T Consensus 98 v~~~~~l~~~~~~~~~l~~~~~~Lk-g---G~~~~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 98 VISILAIHHFSHLEKSFQEMQRIIR-D---GTIVLLTFDIRLAQRI--WL--YDYFPF-LWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHHBC-S---SCEEEEEECGGGCCCC--GG--GGTCHH-HHHHHHTSCCHHHHHH-HHHH
T ss_pred EEEcchHhhccCHHHHHHHHHHHhC-C---cEEEEEEcCCchhHHH--HH--HHHHHH-HhhhhhhhCCCHHHHH-HHHH
Confidence 887 89999999999 3 8898888743322111 10 000100 0001123355778899 9999
Q ss_pred CCCceeEEEec
Q 043533 280 AVFSHYKITPI 290 (301)
Q Consensus 280 aGf~~~~~~~~ 290 (301)
+||+.+++...
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99999988765
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=119.03 Aligned_cols=148 Identities=14% Similarity=0.245 Sum_probs=100.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
+....+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +|+|++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 344589999999999999999887 78999999 888887764 4689999999977 5555 887763
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccc----hh-----------hhh------hhhhhchhhccc
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEE----HE-----------LTE------TKFLFDIVMSVN 262 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~----~~-----------~~~------~~~~~d~~~~~~ 262 (301)
.+|++++++|+| ||.+++ +...+..... .. +.. .....++.++..
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLF-DVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIE 183 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEE-EEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEE-EcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEE
Confidence 789999999999 787765 3321110000 00 000 000011111111
Q ss_pred c-CC-----------ccCCHHHHHHHHHhCCCceeEEEecC--------CceeEEEEeC
Q 043533 263 A-TG-----------KERTESEWAKLFFDAVFSHYKITPIF--------GMKSLIEVYP 301 (301)
Q Consensus 263 ~-~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~--------~~~~~i~a~~ 301 (301)
. +| +.++.+++.++|+++||+++++.... +...+++|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp CTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred cCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 1 11 35799999999999999999987541 2456777765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-14 Score=122.62 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=94.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-c-chhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-P-ANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-~-~D~i~~------ 213 (301)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+..+ . ||+|++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999976 5778999999 888887764 2569999999988333 3 998875
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 899999999999 899888776443222111 0125889999999999999999
Q ss_pred EEecC
Q 043533 287 ITPIF 291 (301)
Q Consensus 287 ~~~~~ 291 (301)
+...+
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 88764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-14 Score=120.29 Aligned_cols=147 Identities=13% Similarity=0.084 Sum_probs=99.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH-------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~------- 213 (301)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. ||+|++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 468999999 888888775 2389999999977 5555 776654
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-----------h----hhh----hhhhhchhhccccC--
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEH-----------E----LTE----TKFLFDIVMSVNAT-- 264 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-----------~----~~~----~~~~~d~~~~~~~~-- 264 (301)
.+|++++++|+| ||.+++ +...+...... . +.. .....++.++...+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIF-DINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEF 190 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEE-EEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSS
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEE-EecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCc
Confidence 789999999999 787765 33221100000 0 000 00001111111111
Q ss_pred ---------CccCCHHHHHHHHHhCCCceeEEEec--------CCceeEEEEeC
Q 043533 265 ---------GKERTESEWAKLFFDAVFSHYKITPI--------FGMKSLIEVYP 301 (301)
Q Consensus 265 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~--------~~~~~~i~a~~ 301 (301)
.+.++.++|.++|+++||+++++... .....+++|+|
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 191 YKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred ccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 24569999999999999999998754 12456777764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-14 Score=126.05 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=107.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~ 207 (301)
..++ +.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +|.
T Consensus 80 ~~~~-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 154 (318)
T 2fk8_A 80 DLNL-DKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE 154 (318)
T ss_dssp HHHH-TTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred HHHH-HhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCC
Confidence 3455 5555 5667899999999999999999987 569999999 888887764 2679999999865 334
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch----hhh-hhhhhhchhh-ccccCCcc
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH----ELT-ETKFLFDIVM-SVNATGKE 267 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~----~~~-~~~~~~d~~~-~~~~~g~~ 267 (301)
||+|++ .+|++++++|+| ||++++.+...+...... +.. ......++.. ....++..
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 231 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcC
Confidence 898875 899999999999 999999888765532110 000 0000111111 11245667
Q ss_pred CCHHHHHHHHHhCCCceeEEEec
Q 043533 268 RTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 268 rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
++.+++.++++++||+++++...
T Consensus 232 ~s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 232 PSTEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp CCHHHHHHHHHHTTCBCCCCEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEec
Confidence 89999999999999999987664
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-14 Score=129.29 Aligned_cols=140 Identities=12% Similarity=0.188 Sum_probs=94.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC----------------------------
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEA---------------------------- 191 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~---------------------------- 191 (301)
+.+...+....+|||||||+|.++..+++++|..+++++|+ +.+++.|++.
T Consensus 38 ~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (292)
T 3g07_A 38 RVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGT 117 (292)
T ss_dssp GTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------
T ss_pred HhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccc
Confidence 44432234578999999999999999999999999999999 8887766531
Q ss_pred ------------------------------------CCeEEEeCCCCCCC------C-c-chhHHH--------------
Q 043533 192 ------------------------------------DNLKYIAGDMLRFI------P-P-ANAFLF-------------- 213 (301)
Q Consensus 192 ------------------------------------~ri~~~~~D~~~~~------p-~-~D~i~~-------------- 213 (301)
++|+|+.+|+.... + . ||+|++
T Consensus 118 ~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 118 TTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred ccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 58999999998622 2 2 888764
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh--CCCceeEEE
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD--AVFSHYKIT 288 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~--aGf~~~~~~ 288 (301)
++|++++++|+| ||.|++....... +........ .+...........+++.++|.+ +||+.+++.
T Consensus 198 ~~~~~l~~~~~~Lkp---GG~lil~~~~~~~------y~~~~~~~~-~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~ 267 (292)
T 3g07_A 198 GLKRMFRRIYRHLRP---GGILVLEPQPWSS------YGKRKTLTE-TIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELV 267 (292)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEECCCHHH------HHTTTTSCH-HHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred HHHHHHHHHHHHhCC---CcEEEEecCCchh------hhhhhcccH-HHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999 7766654221110 000000000 0000111223457899999999 999988876
Q ss_pred ec
Q 043533 289 PI 290 (301)
Q Consensus 289 ~~ 290 (301)
..
T Consensus 268 ~~ 269 (292)
T 3g07_A 268 AT 269 (292)
T ss_dssp --
T ss_pred cc
Confidence 55
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-14 Score=121.45 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=98.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
...+|||||||+|.++..+++++ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. ||+|++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46899999999999999999887 568999999 888887764 2368999999876 5543 898876
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+|++++++|+| ||++++.+...+. .. .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~---~~-------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQE---GV-------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSS---SE-------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCC---cc-------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 789999999999 8999998876654 10 0110 012224589999999999999999
Q ss_pred EEEecC
Q 043533 286 KITPIF 291 (301)
Q Consensus 286 ~~~~~~ 291 (301)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 987664
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=114.61 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=99.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP-ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~-~D~i~~----- 213 (301)
.....+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+..+. ||+|++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35568999999999999999876 57779999999 888887764 23499999999875455 999887
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+++++++.|+| ||++++.+.... +..++.++++++||+.+++...
T Consensus 137 ~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 137 ILLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp HHHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceEEeecc
Confidence 789999999999 888887543211 3677889999999999999888
Q ss_pred CCceeEEEEeC
Q 043533 291 FGMKSLIEVYP 301 (301)
Q Consensus 291 ~~~~~~i~a~~ 301 (301)
..+..++.-+|
T Consensus 186 ~~w~~~~~~~~ 196 (205)
T 3grz_A 186 GRWIGLAISRK 196 (205)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEecc
Confidence 88888877654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=120.80 Aligned_cols=149 Identities=9% Similarity=0.101 Sum_probs=103.1
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCeEEEeCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PH------AVANLPE-------ADNLKYIAGD 200 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~------~~~~a~~-------~~ri~~~~~D 200 (301)
..++ +.++ +....+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++ .++++++.+|
T Consensus 33 ~~l~-~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 33 LAIA-EAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHH-HHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHH-HHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 3456 6665 6777899999999999999999995 8899999999 44 6766653 2689999998
Q ss_pred -CCC---CCCc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh-hhhhchhh--c
Q 043533 201 -MLR---FIPP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET-KFLFDIVM--S 260 (301)
Q Consensus 201 -~~~---~~p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~-~~~~d~~~--~ 260 (301)
+.. +++. ||+|++ .+++.++..++| ||++++.+...+...... .... .......+ .
T Consensus 110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 110 NLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAI 185 (275)
T ss_dssp CTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHH
T ss_pred hhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhc
Confidence 543 3343 999887 656666666677 899999998776543221 1000 00000000 0
Q ss_pred c--ccC--CccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 261 V--NAT--GKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 261 ~--~~~--g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
. ... ...++.+++.++++++||+++++..+.
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 0 011 135799999999999999999887663
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=116.05 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=93.0
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEeCCCCC-CCC-
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A----DNLKYIAGDMLR-FIP- 206 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~----~ri~~~~~D~~~-~~p- 206 (301)
+.+. ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++ . ++++++.+|+.. +.+
T Consensus 23 ~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 100 (219)
T 3jwg_A 23 AVLK--SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF 100 (219)
T ss_dssp HHHH--HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG
T ss_pred HHHh--hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc
Confidence 4444 45578999999999999999999999999999999 888888764 1 289999999965 443
Q ss_pred -cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 207 -PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 207 -~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
.||+|++ ++|++++++|+| ||.+++... .+.+.. + .......+........++.++
T Consensus 101 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~~-~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~ 170 (219)
T 3jwg_A 101 SGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTPN-KEYNFH---Y---GNLFEGNLRHRDHRFEWTRKE 170 (219)
T ss_dssp TTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB-GGGGGC---C---CCT-----GGGCCTTSBCHHH
T ss_pred CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEccc-hhhhhh---h---cccCcccccccCceeeecHHH
Confidence 2999886 889999999999 774443332 111100 0 000000011111223468899
Q ss_pred HH----HHHHhCCCceeEE
Q 043533 273 WA----KLFFDAVFSHYKI 287 (301)
Q Consensus 273 ~~----~ll~~aGf~~~~~ 287 (301)
++ ++++++||++...
T Consensus 171 l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 98 7788999977554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=115.72 Aligned_cols=125 Identities=12% Similarity=0.024 Sum_probs=95.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc-chhHHH----------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP-ANAFLF---------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~-~D~i~~---------- 213 (301)
+....+|||||||+|.++..+++. +.+++++|+ +.+++.+++..+++++.+|+.. +.+. ||+|++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 455789999999999999999988 569999999 8888888764478888999877 5333 998876
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCC-CceeEEEe
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAV-FSHYKITP 289 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~~ 289 (301)
.+|++++++|+| ||.+++........... .... ....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~~------~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLAR------YYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTSC------EECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccch------hccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 899999999999 88888764322211110 0100 112469999999999999 99998875
Q ss_pred c
Q 043533 290 I 290 (301)
Q Consensus 290 ~ 290 (301)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=113.87 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=92.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH-----------H
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF-----------K 214 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~-----------~ 214 (301)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++. ||+|++ .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 120 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHH
Confidence 689999999999999988765 99999 8888877754 89999999977 6654 899887 8
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 215 ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 215 iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
+|++++++|+| ||.+++.+.... .. +...................++.++|.++|+++||+++++...
T Consensus 121 ~l~~~~~~L~p---gG~l~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 121 ALKEAYRILKK---GGYLIVGIVDRE-SF----LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHEEE---EEEEEEEEECSS-SH----HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHcCC---CcEEEEEEeCCc-cH----HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 99999999999 888888765321 11 1010000100000012234679999999999999999988765
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-13 Score=111.94 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=94.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc--chhH
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP--ANAF 211 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i 211 (301)
...++ +.+. ......+|||||||+|.++..++ .+++++|+.+. +++++.+|+.+ +++. ||+|
T Consensus 55 ~~~~~-~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v 119 (215)
T 2zfu_A 55 VDRIA-RDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVA 119 (215)
T ss_dssp HHHHH-HHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEE
T ss_pred HHHHH-HHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEE
Confidence 34455 5554 13456899999999999998883 68999998433 67888999987 6654 8998
Q ss_pred HH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCC
Q 043533 212 LF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAV 281 (301)
Q Consensus 212 ~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aG 281 (301)
++ .+|++++++|+| ||.+++.+... . ..+.+++.++++++|
T Consensus 120 ~~~~~l~~~~~~~~l~~~~~~L~~---gG~l~i~~~~~-------------~-------------~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 120 VFCLSLMGTNIRDFLEEANRVLKP---GGLLKVAEVSS-------------R-------------FEDVRTFLRAVTKLG 170 (215)
T ss_dssp EEESCCCSSCHHHHHHHHHHHEEE---EEEEEEEECGG-------------G-------------CSCHHHHHHHHHHTT
T ss_pred EEehhccccCHHHHHHHHHHhCCC---CeEEEEEEcCC-------------C-------------CCCHHHHHHHHHHCC
Confidence 87 899999999999 89998886321 0 118899999999999
Q ss_pred CceeEEEecCCceeEEEEeC
Q 043533 282 FSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 282 f~~~~~~~~~~~~~~i~a~~ 301 (301)
|+++.+....+...+++++|
T Consensus 171 f~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 171 FKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEEECCSTTCEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEEe
Confidence 99998776666667777653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=116.03 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=92.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-CCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------------------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~D~~~-~~p 206 (301)
+....+|||||||+|..+..|+++ +.+++++|+ +.+++.|++ ..+++++.+|+++ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 569999999 888887753 2589999999987 543
Q ss_pred --c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 207 --P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 207 --~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
. ||+|++ +++++++++|+| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 3 898873 689999999999 89855554332211000 00012588
Q ss_pred HHHHHHHHhCCCceeEEEec
Q 043533 271 SEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~~ 290 (301)
+|+.+++++ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999999 9998877665
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=114.35 Aligned_cols=133 Identities=12% Similarity=0.074 Sum_probs=97.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCC-----CCCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP----EADNLKYIAGDMLR-----FIPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~----~~~ri~~~~~D~~~-----~~p~-~D~i~~-- 213 (301)
+.+..+|||||||+|.++..+++.+|..+++++|. +.+++.++ ..+++.++.+|+.+ +++. +|+|+.
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEec
Confidence 55678999999999999999999988889999999 77775443 35789999999875 2233 898875
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+|+++++.|+| ||.+++. .........+ . . . ....+++. +|+++||+.++
T Consensus 152 ~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~-----~--~--~--------~~~~~~l~-~l~~~Gf~~~~ 209 (230)
T 1fbn_A 152 AQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK-----D--P--K--------EIFKEQKE-ILEAGGFKIVD 209 (230)
T ss_dssp CSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS-----C--H--H--------HHHHHHHH-HHHHHTEEEEE
T ss_pred CChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC-----C--H--H--------HhhHHHHH-HHHHCCCEEEE
Confidence 579999999999 8888887 2211111100 0 0 0 01136778 99999999999
Q ss_pred EEecCCc---eeEEEEeC
Q 043533 287 ITPIFGM---KSLIEVYP 301 (301)
Q Consensus 287 ~~~~~~~---~~~i~a~~ 301 (301)
+..+..+ +.++.+++
T Consensus 210 ~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 210 EVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEECTTTSTTEEEEEEEE
T ss_pred EEccCCCccceEEEEEEe
Confidence 8887543 67777653
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=107.16 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=95.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chh
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANA 210 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~ 210 (301)
..++ ..+ +....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +|+
T Consensus 37 ~~~l-~~~---~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~ 110 (195)
T 3cgg_A 37 ARLI-DAM---APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDL 110 (195)
T ss_dssp HHHH-HHH---SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEE
T ss_pred HHHH-HHh---ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeE
Confidence 3455 444 356789999999999999999988 568999999 888887775 4679999999987 6653 887
Q ss_pred HHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHH
Q 043533 211 FLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 276 (301)
Q Consensus 211 i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~l 276 (301)
|++ .+|+++++.|+| ||.+++.... ...++.+++.++
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~~~~--------------------------~~~~~~~~~~~~ 161 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGA---DGRAVIGFGA--------------------------GRGWVFGDFLEV 161 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEET--------------------------TSSCCHHHHHHH
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEEeCC--------------------------CCCcCHHHHHHH
Confidence 765 789999999999 8887775321 012578999999
Q ss_pred HHhCCCceeEEEec
Q 043533 277 FFDAVFSHYKITPI 290 (301)
Q Consensus 277 l~~aGf~~~~~~~~ 290 (301)
++++||+++++...
T Consensus 162 l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 162 AERVGLELENAFES 175 (195)
T ss_dssp HHHHTEEEEEEESS
T ss_pred HHHcCCEEeeeecc
Confidence 99999999988654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-13 Score=123.35 Aligned_cols=195 Identities=9% Similarity=0.004 Sum_probs=125.6
Q ss_pred HHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcc-hhhcCCCCChhhhhhhhcC-----
Q 043533 17 AQLYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAAST-LLIKDKPYCLSPTVSVFVD----- 79 (301)
Q Consensus 17 l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~-~L~~~~~~~l~~~~~~~~~----- 79 (301)
.++|..| .+|.|+.|||+.++++++.++ ++..++ |.+|+.+. +|...++.+..+.+.....
T Consensus 46 ~~ll~~L-~~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g~~ 123 (373)
T 2qm3_A 46 ENVLSAV-LASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFEDG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGKTVD 123 (373)
T ss_dssp HHHHHHH-HHCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSSS-SEECHHHHHHHHHHTCCCCCC------------
T ss_pred HHHHHHh-cCCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECCC-EEECHHHHHHHHhcCccccccccchhhcCCCcc
Confidence 3889999 689999999999999999888 144445 99999876 6665333222111110000
Q ss_pred -ccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecC
Q 043533 80 -PFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGG 158 (301)
Q Consensus 80 -~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGg 158 (301)
..+...|..+.+.++... .+. ..|+.. .+...... ..++ ...........+|||||
T Consensus 124 ~~~~~~~~~~l~~~~~~~~-~~~------~~~~~~--~~~~~~~~------------~~~l-~~~~~~~~~~~~VLDlG- 180 (373)
T 2qm3_A 124 LQAFADLLEQFREIVKDRP-EPL------HEFDQA--YVTPETTV------------ARVI-LMHTRGDLENKDIFVLG- 180 (373)
T ss_dssp CGGGHHHHHHHHHHHTTCC-CCC------GGGTCC--CBCHHHHH------------HHHH-HHHHTTCSTTCEEEEES-
T ss_pred hhhhHHHHHHHHHHHhcCC-ccc------hhcCCe--ecCHHHHH------------HHHH-HHhhcCCCCCCEEEEEC-
Confidence 011224556666666442 111 011100 00001111 1111 11110122458999999
Q ss_pred CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-----cchhHHH----------HHH
Q 043533 159 GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-----PANAFLF----------KIL 216 (301)
Q Consensus 159 G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-----~~D~i~~----------~iL 216 (301)
|+|.++..+++.+|+.+++++|+ |.+++.|++ -+||+++.+|+.+++| .||+|++ .+|
T Consensus 181 G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~~~l 260 (373)
T 2qm3_A 181 DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEAIRAFV 260 (373)
T ss_dssp CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHHHHHHH
Confidence 99999999999999889999999 899988875 2389999999987443 2899887 789
Q ss_pred HHHHHhcccCCCCcEEEEEeeee
Q 043533 217 KKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 217 ~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++++++|+| ||++++++...
T Consensus 261 ~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 261 GRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp HHHHHTBCS---TTCEEEEEECT
T ss_pred HHHHHHccc---CCeEEEEEEec
Confidence 999999999 89887777643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=110.36 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=91.5
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI--- 205 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~--- 205 (301)
..++ ..++ .....+|||||||+|.++..+++.+|..+++++|+ +++++.+++ .++++++.+|+.+..
T Consensus 30 ~~~l-~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 106 (204)
T 3e05_A 30 AVTL-SKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL 106 (204)
T ss_dssp HHHH-HHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS
T ss_pred HHHH-HHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC
Confidence 3355 5555 66778999999999999999999999999999999 888888775 378999999997643
Q ss_pred CcchhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHH
Q 043533 206 PPANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLF 277 (301)
Q Consensus 206 p~~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll 277 (301)
+.+|+|++ .+++++++.|+| ||++++...... +.+++.+++
T Consensus 107 ~~~D~i~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~~~~l 155 (204)
T 3e05_A 107 PDPDRVFIGGSGGMLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKAVEFL 155 (204)
T ss_dssp CCCSEEEESCCTTCHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHHHHHH
Confidence 33898887 899999999999 898887543110 345677888
Q ss_pred HhCCC
Q 043533 278 FDAVF 282 (301)
Q Consensus 278 ~~aGf 282 (301)
+++||
T Consensus 156 ~~~g~ 160 (204)
T 3e05_A 156 EDHGY 160 (204)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 99998
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=114.72 Aligned_cols=137 Identities=15% Similarity=0.055 Sum_probs=93.9
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEeCCCCC-C
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A----DNLKYIAGDMLR-F 204 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~----~ri~~~~~D~~~-~ 204 (301)
++ +.++ ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++ . .+++++.+|+.. +
T Consensus 21 l~-~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 21 VV-AALK--QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HH-HHHH--HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred HH-HHHH--hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 44 4444 45678999999999999999999999899999999 888887764 1 289999999865 4
Q ss_pred CC--cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCC
Q 043533 205 IP--PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERT 269 (301)
Q Consensus 205 ~p--~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt 269 (301)
.+ .||+|++ ++|++++++|+| ||.+++... .+ ... .........+........++
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~-~~---~~~---~~~~~~~~~~~~~~~~~~~~ 167 (217)
T 3jwh_A 98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN-IE---YNV---KFANLPAGKLRHKDHRFEWT 167 (217)
T ss_dssp GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB-HH---HHH---HTC-----------CCSCBC
T ss_pred ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC-cc---cch---hhcccccccccccccccccC
Confidence 43 3999886 889999999999 785554433 11 000 00000000001111223568
Q ss_pred HHHHH----HHHHhCCCceeEE
Q 043533 270 ESEWA----KLFFDAVFSHYKI 287 (301)
Q Consensus 270 ~~e~~----~ll~~aGf~~~~~ 287 (301)
.+++. ++++++||++...
T Consensus 168 ~~~l~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 168 RSQFQNWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHHHHHHcCceEEEE
Confidence 99998 8889999987544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=110.83 Aligned_cols=139 Identities=11% Similarity=0.062 Sum_probs=94.2
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCeEEEeCCCCC-C
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVAN----LPE------ADNLKYIAGDMLR-F 204 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~----a~~------~~ri~~~~~D~~~-~ 204 (301)
..+ +.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +
T Consensus 18 ~~~-~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~ 94 (218)
T 3mq2_A 18 AEF-EQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP 94 (218)
T ss_dssp HHH-HHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred HHH-HHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence 345 5555 56678999999999999999999999999999999 776654 221 3589999999987 6
Q ss_pred CC---c-chhHH-------------HHHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCcc
Q 043533 205 IP---P-ANAFL-------------FKILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE 267 (301)
Q Consensus 205 ~p---~-~D~i~-------------~~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~ 267 (301)
++ + +++++ ..+|++++++|+| ||++++.-. ....... ...+.-.. .-...
T Consensus 95 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~-~~~~~~~--------~~~~~~~~-~~~~~ 161 (218)
T 3mq2_A 95 PLSGVGELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRP---GASFLVALN-LHAWRPS--------VPEVGEHP-EPTPD 161 (218)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEE---EEEEEEEEE-GGGBTTB--------CGGGTTCC-CCCHH
T ss_pred CCCCCCEEEEEccchhhhhhhhccHHHHHHHHHHHcCC---CcEEEEEec-ccccccc--------ccccccCC-ccchH
Confidence 65 3 44333 1889999999999 887777322 1110000 00010000 00111
Q ss_pred CCHHHHHHHHHhCCCceeEEEecC
Q 043533 268 RTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 268 rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
...+++.++++++||++.++..+.
T Consensus 162 ~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 162 SADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCceeeeccc
Confidence 234568899999999999887653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-13 Score=116.89 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=94.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
+....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++. ||+|++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 566789999999999999999987 578999999 888877653 4789999999977 6654 999887
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh-hhhhhchhhccc-cCCccCCHHHHHHHHHhCCCce
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE-TKFLFDIVMSVN-ATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
.+|++++++|+| ||.+++. ...++......+.. ........-... .....++.+++.++|+++||++
T Consensus 115 ~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 190 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKP---GGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP 190 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEE---EEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred hhcCCHHHHHHHHHHHCCC---CcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCc
Confidence 899999999999 8888877 22111111000000 001111100000 0112457899999999999998
Q ss_pred eEEEe
Q 043533 285 YKITP 289 (301)
Q Consensus 285 ~~~~~ 289 (301)
+.+..
T Consensus 191 ~~~~~ 195 (263)
T 2yqz_A 191 RTREV 195 (263)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 76543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=116.28 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=78.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF---------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~---------- 213 (301)
+...+|||||||+|.++..|++.+ .+++++|+ +.+++.|++.++|+++.+|+.+ ++|+ +|+|++
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 445799999999999999999886 47999999 9999999988999999999987 7775 999987
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
+.+++++++|+| ||.|+++....+
T Consensus 116 ~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 RFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred HHHHHHHHHcCC---CCEEEEEECCCC
Confidence 999999999999 899988876443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=108.69 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=99.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~ 207 (301)
..++ +.++ .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 22 ~~l~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (199)
T 2xvm_A 22 SEVL-EAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDR 96 (199)
T ss_dssp HHHH-HHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCC
T ss_pred HHHH-HHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCC
Confidence 3456 6665 455679999999999999999988 569999999 888887764 2479999999987 5544
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
||+|++ .+|++++++|+| ||.+++++.........+ ......++.+++
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l 158 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGEL 158 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHH
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHH
Confidence 898876 899999999999 899888887654432110 011224588899
Q ss_pred HHHHHhCCCceeEEEec
Q 043533 274 AKLFFDAVFSHYKITPI 290 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~~ 290 (301)
+++|++ |++++....
T Consensus 159 ~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 159 RRYYEG--WERVKYNED 173 (199)
T ss_dssp HHHTTT--SEEEEEECC
T ss_pred HHHhcC--CeEEEeccc
Confidence 999987 999887543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-13 Score=112.21 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=99.8
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCc--
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR---FIPP-- 207 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~---~~p~-- 207 (301)
....++ +.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+ +++.
T Consensus 21 ~~~~l~-~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 21 VNPNLL-KHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp CCHHHH-TTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTC
T ss_pred HHHHHH-HHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCc
Confidence 345566 5554 45689999999999999999988 4 89999999 8888877742 24788899875 3443
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh-hhhhch---hhccccCCccCCHHH
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET-KFLFDI---VMSVNATGKERTESE 272 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~-~~~~d~---~~~~~~~g~~rt~~e 272 (301)
||+|++ .+|+++++.|+| ||.+++.......... .... ...+.. ..........++.++
T Consensus 94 fD~v~~~~~l~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFDPWAVIEKVKPYIKQ---NGVILASIPNVSHISV---LAPLLAGNWTYTEYGLLDKTHIRFFTFNE 167 (230)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHTGGGEEE---EEEEEEEEECTTSHHH---HHHHHTTCCCCBSSSTTBTTCCCCCCHHH
T ss_pred cCEEEECChhhhcCCHHHHHHHHHHHcCC---CCEEEEEeCCcchHHH---HHHHhcCCceeccCCCCCcceEEEecHHH
Confidence 899886 899999999999 8888887643221100 0000 000000 000011224579999
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
|.++++++||+++++...
T Consensus 168 ~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 168 MLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHcCCeEEEEEec
Confidence 999999999999988765
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-13 Score=115.33 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=96.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc-------chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP-------ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~-------~D~i~~- 213 (301)
.....+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +|+|++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45568999999999999999999988 8999999 888887764 4589999999987 3322 577765
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh----hhhhchhhccccCCccCCHHHHHHHH
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET----KFLFDIVMSVNATGKERTESEWAKLF 277 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~----~~~~d~~~~~~~~g~~rt~~e~~~ll 277 (301)
.+|++++++|+| ||+++|++...++...-..+... .......+-.......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 899999999999 99999999854432110000000 00000000000111246899999999
Q ss_pred HhCCCceeEEEec
Q 043533 278 FDAVFSHYKITPI 290 (301)
Q Consensus 278 ~~aGf~~~~~~~~ 290 (301)
+||+++....+
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999876543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=115.87 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=95.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-CCC-------c-c
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR-FIP-------P-A 208 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~-~~p-------~-~ 208 (301)
.+..+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++|+.+|+.+ +++ . |
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8999999999 888887764 4799999999987 432 3 8
Q ss_pred hhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc--ccCC-c-cCCHHHHH
Q 043533 209 NAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV--NATG-K-ERTESEWA 274 (301)
Q Consensus 209 D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g-~-~rt~~e~~ 274 (301)
|+|++ .+|++++++|+| ||.+++.+...+.....+.. ...+.-.+.. ..+. - ....+.++
T Consensus 115 D~V~~~~~l~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~p~~~~~~ 188 (299)
T 3g5t_A 115 DMITAVECAHWFDFEKFQRSAYANLRK---DGTIAIWGYADPIFPDYPEF---DDLMIEVPYGKQGLGPYWEQPGRSRLR 188 (299)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCGGG---TTHHHHHHHCTTTTGGGSCTTHHHHHH
T ss_pred eEEeHhhHHHHhCHHHHHHHHHHhcCC---CcEEEEEecCCccccCcHHH---HHHHHHhccCcccccchhhchhhHHHH
Confidence 98887 899999999999 89988865433221111101 1111111000 0011 1 14566789
Q ss_pred HHHHhCCC-----ceeEEEe
Q 043533 275 KLFFDAVF-----SHYKITP 289 (301)
Q Consensus 275 ~ll~~aGf-----~~~~~~~ 289 (301)
++++++|| ..+++..
T Consensus 189 ~~l~~~gfp~~~f~~v~~~~ 208 (299)
T 3g5t_A 189 NMLKDSHLDPELFHDIQVSY 208 (299)
T ss_dssp TTTTTCCCCTTTEEEEEEEE
T ss_pred HhhhccCCChHHcCcceEEE
Confidence 99999999 5555443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=108.86 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~------ 213 (301)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +|+|++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence 45679999999999999999987 568999999 888887764 3479999999987 5555 898863
Q ss_pred --------HHHHHHHHhcccCCCCcEEEE
Q 043533 214 --------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++|++++++|+| ||.+++
T Consensus 118 ~~~~~~~~~~l~~~~~~L~p---gG~li~ 143 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKP---GGVFIT 143 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCC---CeEEEE
Confidence 899999999999 776654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=111.84 Aligned_cols=132 Identities=8% Similarity=0.014 Sum_probs=85.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhcC---CC------CCCeEEEeCCCCCCCCc--ch---hH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL--PHAVANL---PE------ADNLKYIAGDMLRFIPP--AN---AF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl--p~~~~~a---~~------~~ri~~~~~D~~~~~p~--~D---~i 211 (301)
....+|||||||+|.++..+++++|+.+++++|+ +.+++.| ++ .+++.|+.+|+.+ +|. +| .+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 4567999999999999999999999999999999 4454444 43 3579999999865 232 23 22
Q ss_pred HH----------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHH
Q 043533 212 LF----------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 275 (301)
Q Consensus 212 ~~----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ 275 (301)
.+ .+|++++++|+| ||++++....... ... .. ....+... ........+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~--~~~-~~--~~~~~~~~---~~~~~~~~~el~~ 170 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS--YEE-AE--IKKRGLPL---LSKAYFLSEQYKA 170 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc--chh-ch--hhhcCCCC---CChhhcchHHHHH
Confidence 21 579999999999 8988884432222 110 00 00011100 0000112236999
Q ss_pred HHHhCCCceeEEEecC
Q 043533 276 LFFDAVFSHYKITPIF 291 (301)
Q Consensus 276 ll~~aGf~~~~~~~~~ 291 (301)
+++++||++..+....
T Consensus 171 ~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCCeeeeeecC
Confidence 9999999999887653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=100.43 Aligned_cols=112 Identities=12% Similarity=0.158 Sum_probs=89.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc--chhHHH-----------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP--ANAFLF----------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~--~D~i~~----------- 213 (301)
....+|||||||+|.++..++++. +++++|+ +.+++. .++++++.+|+.++++. ||+|++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 446799999999999999999987 9999999 888887 56899999999887663 898875
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
.+++++.+.+ | ||.+++..... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 5788888888 8 89888876211 14567899999999999
Q ss_pred eEEEec-CCceeEE
Q 043533 285 YKITPI-FGMKSLI 297 (301)
Q Consensus 285 ~~~~~~-~~~~~~i 297 (301)
+.+... .++..++
T Consensus 144 ~~~~~~~~~~e~~~ 157 (170)
T 3q87_B 144 RILKVRKILGETVY 157 (170)
T ss_dssp EEEEEEECSSSEEE
T ss_pred EEEEeeccCCceEE
Confidence 988765 3443333
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-12 Score=107.65 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=97.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCCC--CC---c-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLP----EADNLKYIAGDMLRF--IP---P-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~----~~~ri~~~~~D~~~~--~p---~-~D~i~~- 213 (301)
+.++.+|||+|||+|.++..+++. .|+-+++++|+ |++++.++ +..++..+.+|...+ .+ . +|+|++
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 677899999999999999999987 69999999999 88777554 357899999988763 22 2 787776
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+++++++.||| ||+++|.......+...+ . ....++-.+.|+++||+.+
T Consensus 155 ~~~~~~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p--------~-----------~~~~~~ev~~L~~~GF~l~ 212 (233)
T 4df3_A 155 VAQPEQAAIVVRNARFFLRD---GGYMLMAIKARSIDVTTE--------P-----------SEVYKREIKTLMDGGLEIK 212 (233)
T ss_dssp CCCTTHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTC--------C-----------CHHHHHHHHHHHHTTCCEE
T ss_pred ccCChhHHHHHHHHHHhccC---CCEEEEEEecccCCCCCC--------h-----------HHHHHHHHHHHHHCCCEEE
Confidence 789999999999 899888653222111110 0 0011234567899999999
Q ss_pred EEEecCC---ceeEEEEe
Q 043533 286 KITPIFG---MKSLIEVY 300 (301)
Q Consensus 286 ~~~~~~~---~~~~i~a~ 300 (301)
+...+.. .+.++.++
T Consensus 213 e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 213 DVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp EEEECTTTSTTEEEEEEC
T ss_pred EEEccCCCCCceEEEEEE
Confidence 9888743 46777665
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=106.94 Aligned_cols=120 Identities=8% Similarity=0.051 Sum_probs=91.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH---------
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF--------- 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~--------- 213 (301)
+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHH
Confidence 9999999999999999987 569999999 888887765 3489999999987 6653 898875
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+|++++++|+| ||.+++.+......... .... ......++.+++.++|+ ||+++++...
T Consensus 110 ~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 110 RQQLYPKVYQGLKP---GGVFILEGFAPEQLQYN---------TGGP---KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHTTCCS---SEEEEEEEECTTTGGGT---------SCCS---SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHhcCC---CcEEEEEEeccccccCC---------CCCC---CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 899999999999 88888877643221100 0000 01123579999999999 9999987654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=113.32 Aligned_cols=140 Identities=9% Similarity=-0.052 Sum_probs=96.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-Cc--chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI-PP--ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~-p~--~D~i~~- 213 (301)
+....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ +. ||+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 4669999999 888887764 2579999999987 66 33 888764
Q ss_pred --------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc-------cchhh-----------hh-hhhhhchhhc
Q 043533 214 --------------KILKKRREAIASNGERGKVIIIDIVINAEE-------EEHEL-----------TE-TKFLFDIVMS 260 (301)
Q Consensus 214 --------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~-------~~~~~-----------~~-~~~~~d~~~~ 260 (301)
.+|++++++|+| ||.+++......... ..+.. .. ....+.+.+.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 799999999999 888887764321100 00000 00 0000000000
Q ss_pred c---ccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 261 V---NATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 261 ~---~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
. ......++.++++++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0 01124568999999999999999998765
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-12 Score=113.65 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=81.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
..++ ..++ .....+|||+|||+|.++..+++. +|..+++++|+ +++++.|++ .++++++.+|+.++++
T Consensus 83 ~~i~-~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 83 ALIV-AYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HHHH-HhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 3455 5555 667789999999999999999999 89999999999 888888774 4669999999988766
Q ss_pred c--chhHHH------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P--ANAFLF------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. +|+|++ .+|++++++|+| ||++++..
T Consensus 160 ~~~~D~v~~~~~~~~~~l~~~~~~L~~---gG~l~~~~ 194 (255)
T 3mb5_A 160 EENVDHVILDLPQPERVVEHAAKALKP---GGFFVAYT 194 (255)
T ss_dssp CCSEEEEEECSSCGGGGHHHHHHHEEE---EEEEEEEE
T ss_pred CCCcCEEEECCCCHHHHHHHHHHHcCC---CCEEEEEE
Confidence 4 999998 799999999999 89888764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-12 Score=112.45 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=93.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC-------------------------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---AD------------------------------- 192 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~------------------------------- 192 (301)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3457899999999999999998876 68999999 888877753 11
Q ss_pred -Ce-EEEeCCCCCC-C--C---c-chhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh
Q 043533 193 -NL-KYIAGDMLRF-I--P---P-ANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL 248 (301)
Q Consensus 193 -ri-~~~~~D~~~~-~--p---~-~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~ 248 (301)
++ +++.+|+.+. . + . ||+|++ .+|++++++|+| ||.+++.+.... ...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~-~~~---- 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKS-SYY---- 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSC-CEE----
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCC-ceE----
Confidence 28 9999999872 2 2 3 898765 789999999999 898888874221 110
Q ss_pred hhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 249 TETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 249 ~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
..-+. .......+.+++.++|+++||+++++...+
T Consensus 206 ----~~~~~----~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 ----MIGEQ----KFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ----EETTE----EEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ----EcCCc----cccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00000 011234689999999999999999887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-12 Score=113.24 Aligned_cols=131 Identities=12% Similarity=0.147 Sum_probs=85.7
Q ss_pred CCCeEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCeEE--EeCCCCC-C------C
Q 043533 149 GLGSLVDVGGGNVSFSR----IISEAFPGIKC--TVLDL-PHAVANLPE-------ADNLKY--IAGDMLR-F------I 205 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~----~l~~~~P~~~~--~~~Dl-p~~~~~a~~-------~~ri~~--~~~D~~~-~------~ 205 (301)
+..+|||||||+|.++. .++.++|+.++ +++|. ++|++.+++ .+++++ ..+|..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 34689999999997654 45566788855 99999 888887653 134544 4555432 2 2
Q ss_pred Cc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 206 PP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 206 p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
+. ||+|++ +.|++++++|+| ||++++.+.. ++.. +......+.-.+-.......++.++
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp---gG~l~i~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGT---NAKMLIIVVS-GSSG----WDKLWKKYGSRFPQDDLCQYITSDD 203 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEE---EEEEEEEEEC-TTSH----HHHHHHHHGGGSCCCTTCCCCCHHH
T ss_pred CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCC---CcEEEEEEec-CCcc----HHHHHHHHHHhccCCCcccCCCHHH
Confidence 33 999987 899999999999 8999988643 1111 1111000100000001123578999
Q ss_pred HHHHHHhCCCceeEE
Q 043533 273 WAKLFFDAVFSHYKI 287 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~ 287 (301)
|.++|+++||+.+..
T Consensus 204 ~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 204 LTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 999999999998764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=109.05 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=95.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
.....+|||||||+|.++..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 455689999999999986555544 5679999999 888887764 4689999999987 6653 898875
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhch-hhccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
++|++++++|+| ||.+++.+...++.............+.. .......+..++.+|+.++++++||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 899999999999 89888887765443321000000000100 00000112456899999999999998
Q ss_pred eeEEE
Q 043533 284 HYKIT 288 (301)
Q Consensus 284 ~~~~~ 288 (301)
..+..
T Consensus 177 ~~~~~ 181 (209)
T 2p8j_A 177 FKEDR 181 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 77543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=119.62 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKYIAG 199 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~~~~ 199 (301)
..++ +.+. +....+|||||||+|.+++.++..++..+++++|+ +.+++.|++ .++|+|+.|
T Consensus 163 ~~il-~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 163 AQMI-DEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHH-HHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHH-HhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 4455 5555 67788999999999999999999987767999999 666665542 378999999
Q ss_pred CCCC-CCC----cchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc
Q 043533 200 DMLR-FIP----PANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEE 244 (301)
Q Consensus 200 D~~~-~~p----~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~ 244 (301)
|+++ +++ .+|+|++ +.|++++++|+| ||+|++.|.+.+++..
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE---GGRIVSSKPFAPLNFR 296 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCT---TCEEEESSCSSCTTCC
T ss_pred cccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCC---CcEEEEeecccCCCCC
Confidence 9998 553 3788764 888999999999 9999999998887643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-13 Score=118.51 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
..+.+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ..++.++.+|+.. ++++ ||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 55689999999999999999988775 8999999 999998874 5678889888753 3554 776642
Q ss_pred -------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhC
Q 043533 214 -------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA 280 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~a 280 (301)
.++++++++||| ||++++++....... ....++.. .....+.+...|.++
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkP---GG~l~f~~~~~~~~~-------~~~~~~~~-------~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLTSWGEL-------MKSKYSDI-------TIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHHHHHHH-------TTTTCSCH-------HHHHHHHTHHHHHHH
T ss_pred ecccchhhhcchhhhhhhhhheeCC---CCEEEEEecCCchhh-------hhhhhhhh-------hhhhHHHHHHHHHHc
Confidence 789999999999 887766542211100 00111100 011244567788899
Q ss_pred CCceeEE
Q 043533 281 VFSHYKI 287 (301)
Q Consensus 281 Gf~~~~~ 287 (301)
||+...+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9987644
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=109.92 Aligned_cols=120 Identities=5% Similarity=-0.019 Sum_probs=91.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLR 203 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~ 203 (301)
....+|||||||+|..+..|++. +.+++++|+ +.+++.|++ ..+|+|+.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 568999999 888887642 2579999999998
Q ss_pred -CCC--c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCc
Q 043533 204 -FIP--P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGK 266 (301)
Q Consensus 204 -~~p--~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 266 (301)
+.+ . ||+|+. .++++++++|+| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 543 3 998873 689999999999 89887666543321100 0001
Q ss_pred cCCHHHHHHHHHhCCCceeEEEec
Q 043533 267 ERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 267 ~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
..+.+|+.+++++ +|+++.+...
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2589999999988 5998877654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=111.21 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=87.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC--CCC-c--chhHHH-----HH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR--FIP-P--ANAFLF-----KI 215 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~--~~p-~--~D~i~~-----~i 215 (301)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ . ||+|++ .+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~ 124 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSV 124 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHHH
Confidence 55689999999999999999998 579999999 888888875 6789999999965 454 3 999998 99
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 216 LKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
|++++++|+| ||.++ .. +...+..++.++++++||+...+...
T Consensus 125 l~~~~~~Lkp---gG~l~----------~~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 125 ILRLPELAAP---DAHFL----------YV-------------------GPRLNVPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp GGGHHHHEEE---EEEEE----------EE-------------------ESSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHcCC---CcEEE----------Ee-------------------CCcCCHHHHHHHHHHCCCeEEEEEee
Confidence 9999999999 88777 00 00123456788888888888776543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-12 Score=109.68 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=93.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc--chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP--ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~--~D~i~~----- 213 (301)
..+..+|||+|||+|.+++.+++..+ +++++|+ |.+++.+++ .-.+++..+|+.++++. ||+|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35568999999999999999998866 9999999 888887764 11289999998765533 898876
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+++++++.|+| ||++++.+... .+.+++.++++++||+.+++...
T Consensus 196 ~~~~~l~~~~~~Lkp---gG~lils~~~~----------------------------~~~~~v~~~l~~~Gf~~~~~~~~ 244 (254)
T 2nxc_A 196 LHAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCC---CCEEEEEeecc----------------------------CCHHHHHHHHHHCCCEEEEEecc
Confidence 889999999999 88888764321 02678899999999999998887
Q ss_pred CCceeE
Q 043533 291 FGMKSL 296 (301)
Q Consensus 291 ~~~~~~ 296 (301)
..+..+
T Consensus 245 ~~W~~l 250 (254)
T 2nxc_A 245 GEWVLL 250 (254)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 665544
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-12 Score=109.91 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=95.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~D~i~~----- 213 (301)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++++ . ||+|++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3467999999999999999999999999999999 888887764 2579999999987553 3 777653
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 262 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 262 (301)
.+++++++.|+| ||.+++.. .
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~--------~----------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEH--------G----------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEEC--------C-----------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE--------C-----------------
Confidence 678899999999 77666531 0
Q ss_pred cCCccCCHHHHHHHHHhCCCceeEEEe-cCCceeEEEEeC
Q 043533 263 ATGKERTESEWAKLFFDAVFSHYKITP-IFGMKSLIEVYP 301 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~a~~ 301 (301)
..+.+++.++++++||+.+++.. ..+...++.+++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 12467889999999999887765 456666666653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-12 Score=114.31 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=74.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR- 203 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~- 203 (301)
+.+. +.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+.+
T Consensus 47 ~~l~-~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (293)
T 3thr_A 47 AWLL-GLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 121 (293)
T ss_dssp HHHH-HHHH--HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred HHHH-HHhc--ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence 4445 5555 4567899999999999999999984 49999999 888887753 2578899999877
Q ss_pred C---CCc--chhHHH-------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 204 F---IPP--ANAFLF-------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 204 ~---~p~--~D~i~~-------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+ ++. ||+|++ ++|++++++|+| ||.+++...
T Consensus 122 ~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 176 (293)
T 3thr_A 122 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR 176 (293)
T ss_dssp HHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 5 443 887753 689999999999 888877654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=112.31 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=77.4
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCeEEEeCCCCCCCCc
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE----A---DNLKYIAGDMLRFIPP 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~----~---~ri~~~~~D~~~~~p~ 207 (301)
.++ +.++ +.+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++ . ++++++.+|+.++++.
T Consensus 101 ~~~-~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 101 YII-MRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHH-HHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 455 5555 667789999999999999999998 88999999999 888876653 2 5899999999886664
Q ss_pred --chhHHH------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 --ANAFLF------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 --~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||+|++ .+|++++++|+| ||++++..
T Consensus 178 ~~fD~Vi~~~~~~~~~l~~~~~~Lkp---gG~l~i~~ 211 (275)
T 1yb2_A 178 QMYDAVIADIPDPWNHVQKIASMMKP---GSVATFYL 211 (275)
T ss_dssp CCEEEEEECCSCGGGSHHHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEEcCcCHHHHHHHHHHHcCC---CCEEEEEe
Confidence 999998 899999999999 89888876
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=103.49 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=91.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----CCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAV----ANLPEADNLKYIAGDMLRF-----IPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~----~~a~~~~ri~~~~~D~~~~-----~p~-~D~i~~-- 213 (301)
+.+..+|||||||+|.++..+++..++.+++++|+ |.++ +.++...++.++.+|+..+ ++. +|+|++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 134 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 134 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence 45678999999999999999999988779999999 6543 4444356899999998763 234 899887
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH----HHHHHhCCC
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW----AKLFFDAVF 282 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~----~~ll~~aGf 282 (301)
.+|++++++|+| ||++++.-... . .+.. .+.+++ .+.++++ |
T Consensus 135 ~~~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~---~-----------~~~~---------~~~~~~~~~~~~~l~~~-f 187 (210)
T 1nt2_A 135 AQKNQIEILKANAEFFLKE---KGEVVIMVKAR---S-----------IDST---------AEPEEVFKSVLKEMEGD-F 187 (210)
T ss_dssp CSTTHHHHHHHHHHHHEEE---EEEEEEEEEHH---H-----------HCTT---------SCHHHHHHHHHHHHHTT-S
T ss_pred cChhHHHHHHHHHHHHhCC---CCEEEEEEecC---C-----------cccc---------CCHHHHHHHHHHHHHhh-c
Confidence 358999999999 89888873211 0 0100 112222 1238888 9
Q ss_pred ceeEEEecCC---ceeEEEEeC
Q 043533 283 SHYKITPIFG---MKSLIEVYP 301 (301)
Q Consensus 283 ~~~~~~~~~~---~~~~i~a~~ 301 (301)
++++...... .+.++.+++
T Consensus 188 ~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 188 KIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp EEEEEEECTTTCTTEEEEEEEE
T ss_pred EEeeeecCCCCCCCcEEEEEEc
Confidence 9999887732 567777764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-12 Score=114.48 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=87.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-------------------------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----A------------------------------- 191 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~------------------------------- 191 (301)
.+..+|||||||+|.++..+++..- .+++++|+ +.+++.|++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3457899999999988776665432 26999999 888886542 0
Q ss_pred CCeE-EEeCCCCCC--C-----CcchhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh
Q 043533 192 DNLK-YIAGDMLRF--I-----PPANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL 248 (301)
Q Consensus 192 ~ri~-~~~~D~~~~--~-----p~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~ 248 (301)
.+|. ++.+|+.++ + +.||+|++ ++|++++++||| ||.+++.+... .....
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~-~~~~~--- 205 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLR-LPSYM--- 205 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-CCEEE---
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeec-Cccce---
Confidence 1244 889999872 2 23898776 679999999999 89888876432 11110
Q ss_pred hhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 249 TETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 249 ~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
..-. .......+.+++.++|+++||+++++...
T Consensus 206 ------~g~~---~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 206 ------VGKR---EFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ------ETTE---EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------eCCe---EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0000 01122458999999999999999988764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=107.14 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=96.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~- 207 (301)
..++ +.++ .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 110 ~~~~-~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 184 (286)
T 3m70_A 110 GDVV-DAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQEN 184 (286)
T ss_dssp HHHH-HHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSC
T ss_pred HHHH-HHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCC
Confidence 4466 6665 456789999999999999999998 569999999 888887764 2389999999987 4554
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ .+|+++++.|+| ||.++++.....+....+ ......++.++++
T Consensus 185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~ 246 (286)
T 3m70_A 185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELK 246 (286)
T ss_dssp EEEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHH
T ss_pred ccEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHH
Confidence 998876 899999999999 898787766444322110 0111245678888
Q ss_pred HHHHhCCCceeEEE
Q 043533 275 KLFFDAVFSHYKIT 288 (301)
Q Consensus 275 ~ll~~aGf~~~~~~ 288 (301)
++++. |+++...
T Consensus 247 ~~~~~--~~~~~~~ 258 (286)
T 3m70_A 247 EYYKD--WEFLEYN 258 (286)
T ss_dssp HHTTT--SEEEEEE
T ss_pred HHhcC--CEEEEEE
Confidence 88865 8887764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=107.21 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=90.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC----Cc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FI----PP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~----p~-~D~i~~ 213 (301)
+.+..+|||||||+|.++..++...|+.+++++|+ +.+++.+++ .++|+++.+|+.+ +. +. ||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34678999999999999999999999999999999 888887764 2479999999866 43 23 999987
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+++++++.|+| ||.+++.... ... . ...++.+.++++||+..+
T Consensus 148 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~g~----~~~-------~---------------~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 148 RAVARLSVLSELCLPLVKK---NGLFVALKAA----SAE-------E---------------ELNAGKKAITTLGGELEN 198 (240)
T ss_dssp ECCSCHHHHHHHHGGGEEE---EEEEEEEECC-----CH-------H---------------HHHHHHHHHHHTTEEEEE
T ss_pred eccCCHHHHHHHHHHhcCC---CCEEEEEeCC----Cch-------H---------------HHHHHHHHHHHcCCeEeE
Confidence 999999999999 8888775210 000 0 124677889999999988
Q ss_pred EEec
Q 043533 287 ITPI 290 (301)
Q Consensus 287 ~~~~ 290 (301)
+...
T Consensus 199 ~~~~ 202 (240)
T 1xdz_A 199 IHSF 202 (240)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=104.29 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=94.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---cchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP---PANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p---~~D~i~~--- 213 (301)
++..+|+|||||+|.+++.+++.+|..+++++|+ |.+++.|++ .++|++..+|.+++++ .+|+|++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4457999999999999999999999999999999 888888775 4689999999998665 2897764
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
.||..+.+.|++ +|++++ ... . .....+++|.+.||.+++.
T Consensus 94 Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~---~--------------------------~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 94 GGRLIARILEEGLGKLAN---VERLIL-QPN---N--------------------------REDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp CHHHHHHHHHHTGGGCTT---CCEEEE-EES---S--------------------------CHHHHHHHHHHTTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCC---CCEEEE-ECC---C--------------------------CHHHHHHHHHHCCCEEEEE
Confidence 888888889998 676555 332 0 1334588999999999876
Q ss_pred Eec--CC-ceeEEEEe
Q 043533 288 TPI--FG-MKSLIEVY 300 (301)
Q Consensus 288 ~~~--~~-~~~~i~a~ 300 (301)
.-+ .+ ++.+|.+.
T Consensus 141 ~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 141 SILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEEEECCEEEEEEEEE
Confidence 543 23 57777765
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.4e-11 Score=100.07 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=94.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcC----CCCCCeEEEeCCCCCC-----CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANL----PEADNLKYIAGDMLRF-----IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a----~~~~ri~~~~~D~~~~-----~p~-~D~i~~- 213 (301)
+.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++.+ +..++++++.+|+.++ .+. +|+|++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999884 6789999999 7555443 3357899999999762 234 899887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+++++++.|+| ||.+++. .........+ ... ....+++.++ +++ |+.+
T Consensus 151 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---------~~~--------~~~~~~l~~l-~~~-f~~~ 207 (227)
T 1g8a_A 151 VAQPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---------EPE--------QVFREVEREL-SEY-FEVI 207 (227)
T ss_dssp CCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---------CHH--------HHHHHHHHHH-HTT-SEEE
T ss_pred CCCHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---------Chh--------hhhHHHHHHH-Hhh-ceee
Confidence 349999999999 8888887 2211111000 000 1236677887 777 9999
Q ss_pred EEEecCCc---eeEEEEeC
Q 043533 286 KITPIFGM---KSLIEVYP 301 (301)
Q Consensus 286 ~~~~~~~~---~~~i~a~~ 301 (301)
+...+... +.++.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 208 ERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEECTTTSSSEEEEEEEC
T ss_pred eEeccCcccCCCEEEEEEe
Confidence 98877543 67777664
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-13 Score=115.21 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=91.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCC----CCCC----c-chhH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDML----RFIP----P-ANAF 211 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~----~~~p----~-~D~i 211 (301)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++ .++++++.+|+. ++++ . ||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988999999999 888887764 357999999953 3444 3 8887
Q ss_pred HH-------H-------------------HHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCC
Q 043533 212 LF-------K-------------------ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 265 (301)
Q Consensus 212 ~~-------~-------------------iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 265 (301)
++ . ++.+++++|+| ||++.+++.+..... .......++....+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~~~--------~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHDSL--------QLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHHHH--------HHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHHHH--------hcccceEEEEECCC
Confidence 76 1 34567788888 888877765432110 00111111111224
Q ss_pred ccCCHHHHHHHHHhCCCceeEEEec
Q 043533 266 KERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 266 ~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 4455689999999999999988766
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=106.29 Aligned_cols=132 Identities=9% Similarity=0.058 Sum_probs=92.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHH----HhcCCCCCCeEEEeCCCCCC--CC---c-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHA----VANLPEADNLKYIAGDMLRF--IP---P-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~----~~~a~~~~ri~~~~~D~~~~--~p---~-~D~i~~- 213 (301)
+....+|||||||+|.++..+++.+ |+.+++++|+ +.+ ++.++..++++++.+|+.++ +| . +|+|++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7889999999 554 44444357899999999872 22 2 899887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+++++++.|+| ||.+++ .......... ..... +-..+ .++|+++||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~---------~~~~~--------~~~~~-~~~l~~~Gf~~~ 212 (233)
T 2ipx_A 155 VAQPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDST---------ASAEA--------VFASE-VKKMQQENMKPQ 212 (233)
T ss_dssp CCCTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSS---------SCHHH--------HHHHH-HHTTGGGTEEEE
T ss_pred CCCccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccC---------CCHHH--------HHHHH-HHHHHHCCCceE
Confidence 458999999999 787777 3321100000 00000 00123 588999999999
Q ss_pred EEEecCC---ceeEEEEe
Q 043533 286 KITPIFG---MKSLIEVY 300 (301)
Q Consensus 286 ~~~~~~~---~~~~i~a~ 300 (301)
++..+.. .+.++.++
T Consensus 213 ~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 213 EQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEECTTTSSSEEEEEEE
T ss_pred EEEecCCccCCcEEEEEE
Confidence 9777643 36666654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=109.87 Aligned_cols=87 Identities=16% Similarity=0.309 Sum_probs=75.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCcchhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPPANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~----- 213 (301)
+....+|||||||+|.++..++.+.++.+++++|+ |++++.|++ .++|+|+.+|+.+ +-..||+|++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~ 199 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAE 199 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCS
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCcc
Confidence 56789999999999988877777778999999999 999998875 3799999999976 4223999986
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+++++++++|+| ||++++.+
T Consensus 200 d~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 200 PKRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp CHHHHHHHHHHHCCT---TCEEEEEE
T ss_pred CHHHHHHHHHHHcCC---CcEEEEEc
Confidence 899999999999 99998876
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-11 Score=105.93 Aligned_cols=114 Identities=14% Similarity=0.024 Sum_probs=91.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~--- 213 (301)
..+..+|||+|||+|.++..+++..+. +++++|+ |.+++.|++ .++++++.+|+++ +.+. ||+|++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 345789999999999999999999877 8999999 888887764 4579999999988 3344 999988
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+++++.++|+| ||.+++.+....... .....+++.++++++||+...
T Consensus 202 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 VRTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp SSGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCeeEE
Confidence 899999999999 888887776431100 012467788999999999876
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=106.18 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=80.5
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
.++ ..++ +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 87 ~~~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 87 AMV-TLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHH-HHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 455 5555 667789999999999999999998 78899999999 888877764 2689999999987 476
Q ss_pred c--chhHHH------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P--ANAFLF------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. +|+|++ .+|++++++|+| ||++++..
T Consensus 164 ~~~~D~v~~~~~~~~~~l~~~~~~L~~---gG~l~~~~ 198 (258)
T 2pwy_A 164 EAAYDGVALDLMEPWKVLEKAALALKP---DRFLVAYL 198 (258)
T ss_dssp TTCEEEEEEESSCGGGGHHHHHHHEEE---EEEEEEEE
T ss_pred CCCcCEEEECCcCHHHHHHHHHHhCCC---CCEEEEEe
Confidence 4 999998 899999999999 89888876
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-12 Score=108.00 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=84.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC---
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP--- 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p--- 206 (301)
..++ +.+. ......+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++++
T Consensus 19 ~~~~-~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 96 (215)
T 4dzr_A 19 EEAI-RFLK-RMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERA 96 (215)
T ss_dssp HHHH-HHHT-TCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHH
T ss_pred HHHH-HHhh-hcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhh
Confidence 3345 4444 125678999999999999999999999999999999 889988875 1268888888876432
Q ss_pred ---c-chhHHH-------------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccc
Q 043533 207 ---P-ANAFLF-------------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEE 245 (301)
Q Consensus 207 ---~-~D~i~~-------------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~ 245 (301)
. ||+|++ .+++++++.|+| ||.+++++..
T Consensus 97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~------- 166 (215)
T 4dzr_A 97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVG------- 166 (215)
T ss_dssp HTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECT-------
T ss_pred hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEEC-------
Confidence 3 787764 456777888898 8885665431
Q ss_pred hhhhhhhhhhchhhccccCCccCCHHHHHHHHH--hCCCceeEEEec-CCceeEEEEe
Q 043533 246 HELTETKFLFDIVMSVNATGKERTESEWAKLFF--DAVFSHYKITPI-FGMKSLIEVY 300 (301)
Q Consensus 246 ~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~-~~~~~~i~a~ 300 (301)
....+++.++++ ++||..+++... .+...++.++
T Consensus 167 ---------------------~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 167 ---------------------HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ---------------------TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ---------------------CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 012455677778 888888877654 3444555443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=102.70 Aligned_cols=120 Identities=9% Similarity=0.025 Sum_probs=94.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-C--cchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI-P--PANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~-p--~~D~i~~--- 213 (301)
++..+|+|||||+|.+++.+++.+|..+++++|+ |.+++.|++ .+||++..+|.++.+ | .+|+|++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4457999999999999999999999999999999 888888875 578999999999854 3 2898764
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
.||....+.|++ +|++++.-. . ...++++||.+.||.+++.
T Consensus 100 Gg~lI~~IL~~~~~~l~~---~~~lIlqp~-~-----------------------------~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 100 GGRLIADILNNDIDKLQH---VKTLVLQPN-N-----------------------------REDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp CHHHHHHHHHHTGGGGTT---CCEEEEEES-S-----------------------------CHHHHHHHHHHTTEEEEEE
T ss_pred chHHHHHHHHHHHHHhCc---CCEEEEECC-C-----------------------------ChHHHHHHHHHCCCEEEEE
Confidence 888888888887 675554321 0 1455689999999999986
Q ss_pred Eec---CCceeEEEEe
Q 043533 288 TPI---FGMKSLIEVY 300 (301)
Q Consensus 288 ~~~---~~~~~~i~a~ 300 (301)
.-+ .-++.+|.+.
T Consensus 147 ~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 147 DILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEC--CEEEEEEEE
T ss_pred EEEEECCEEEEEEEEE
Confidence 654 2367888775
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=104.01 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=93.1
Q ss_pred cc-CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CC-c-chhHH
Q 043533 147 FE-GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F--IP-P-ANAFL 212 (301)
Q Consensus 147 ~~-~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~--~p-~-~D~i~ 212 (301)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.|++ .+|++++.+|+.+ + ++ . ||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999876 9999999 888887764 4689999999987 3 33 3 88877
Q ss_pred H-------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc
Q 043533 213 F-------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV 261 (301)
Q Consensus 213 ~-------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (301)
+ .+++++.+.|+| ||+++++- +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RP-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CT--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cH--------------------
Confidence 6 389999999999 88888741 11
Q ss_pred ccCCccCCHHHHHHHHHhCCCceeEEEecC------CceeEEEEe
Q 043533 262 NATGKERTESEWAKLFFDAVFSHYKITPIF------GMKSLIEVY 300 (301)
Q Consensus 262 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~~i~a~ 300 (301)
....++.+++++.||...++..+. ....+++++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 217 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGI 217 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEE
Confidence 123456778888899888776651 235666665
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=114.44 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC------CCC-
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR------FIP- 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~------~~p- 206 (301)
+..++ +.+. .....+|||||||+|.++..++++ +.+++++|+ +.+++.+++. .+......+.. +++
T Consensus 96 ~~~l~-~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 96 ARDFL-ATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHH-HTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHH-HHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 44566 6665 566789999999999999999987 458999999 8888888753 33333322211 222
Q ss_pred c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 207 P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 207 ~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
. ||+|++ .+|++++++|+| ||.+++....... +.. ...++... ......++.++|.
T Consensus 170 ~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lkp---gG~l~i~~~~~~~------~~~-~~~~~~~~--~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYVQSVLEGVDALLAP---DGVFVFEDPYLGD------IVA-KTSFDQIF--DEHFFLFSATSVQ 237 (416)
T ss_dssp CCEEEEEEESCGGGCTTHHHHHHHHHHHEEE---EEEEEEEEECHHH------HHH-HTCGGGCS--TTCCEECCHHHHH
T ss_pred CCEEEEEECChHHhcCCHHHHHHHHHHHcCC---CeEEEEEeCChHH------hhh-hcchhhhh--hhhhhcCCHHHHH
Confidence 2 898887 899999999999 8877775432211 000 01111111 1223357999999
Q ss_pred HHHHhCCCceeEEEecC
Q 043533 275 KLFFDAVFSHYKITPIF 291 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~~ 291 (301)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=102.91 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=87.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chhHHH---------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANAFLF--------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~i~~--------- 213 (301)
...+|||||||+|.++..+ +. +++++|+ +.+++.+++ .++++++.+|+.+ +++. +|+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 5689999999999999888 45 8999999 888887765 3689999999987 6654 999887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh-hccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV-MSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++|++++++|+| ||.+++.+..... . +.......... .......+.+|.++++++|+ | .+++.
T Consensus 111 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G--~~~~~ 176 (211)
T 2gs9_A 111 VERVLLEARRVLRP---GGALVVGVLEALS-P----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P--PEAEG 176 (211)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEEECTTS-H----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S--CSEEE
T ss_pred HHHHHHHHHHHcCC---CCEEEEEecCCcC-c----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C--cceeE
Confidence 899999999999 8888887753221 1 11000000000 00011245679999999999 7 44443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=100.82 Aligned_cols=93 Identities=12% Similarity=0.224 Sum_probs=76.5
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC---
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP--- 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p--- 206 (301)
++ +.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .+++ ++.+|..+++|
T Consensus 17 ~~-~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 17 AI-SALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HH-HHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HH-HHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 45 5555 56677999999999999999999999999999999 888887763 2478 88899866433
Q ss_pred c-chhHHH-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 P-ANAFLF-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ~-~D~i~~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
. ||+|++ .+++++++.|+| ||++++.+.
T Consensus 93 ~~~D~i~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTAPGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTCTTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCCEEEECCcccHHHHHHHHHHhcCC---CCEEEEEee
Confidence 3 999987 699999999999 898887664
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-11 Score=99.25 Aligned_cols=94 Identities=15% Similarity=0.302 Sum_probs=76.5
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CeEEEeCCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------AD--NLKYIAGDMLRFIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~--ri~~~~~D~~~~~p 206 (301)
..++ +.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .+ |++++.+|+.++.+
T Consensus 42 ~~l~-~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (194)
T 1dus_A 42 KILV-ENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHH-HHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHH-HHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence 4456 6665 556789999999999999999988 779999999 888877764 22 59999999988554
Q ss_pred c--chhHHH------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 P--ANAFLF------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ~--~D~i~~------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
. ||+|++ .+++++++.|+| ||.+++...
T Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 158 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD---NGEIWVVIQ 158 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cCCceEEEECCCcccchhHHHHHHHHHHHHcCC---CCEEEEEEC
Confidence 3 888775 889999999999 888887764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=103.21 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-chhHHH-------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-ANAFLF------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~D~i~~------- 213 (301)
..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+..+ . ||+|++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~~~~ 145 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLN 145 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSSHH
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccCCHH
Confidence 67999999999999999999999999999999 888877764 2459999999987433 3 999887
Q ss_pred HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++++++.|+| ||.+++.
T Consensus 146 ~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 146 DMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp HHHHHHTTSEEE---EEEEEEE
T ss_pred HHHHHHHHhcCC---CcEEEEE
Confidence 899999999999 8877775
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-11 Score=107.74 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC---------------------------------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--AD--------------------------------- 192 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~--------------------------------- 192 (301)
...+|||||||+|.++ .++...+..+++++|+ +.+++.|++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4679999999999944 3444445569999999 888876543 00
Q ss_pred -CeEEEeCCCCC--C-----CCc--chhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh
Q 043533 193 -NLKYIAGDMLR--F-----IPP--ANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE 247 (301)
Q Consensus 193 -ri~~~~~D~~~--~-----~p~--~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~ 247 (301)
.+.++.+|+.+ | ++. ||+|++ ++|++++++|+| ||++++.+.. .....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~-~~~~~--- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGAL-EESWY--- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEE-SCCEE---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEec-CcceE---
Confidence 14567778876 2 222 898765 789999999999 8988887532 21110
Q ss_pred hhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 248 LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 248 ~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
..-+. ......++.++|.++|+++||+++++...
T Consensus 223 -----~~~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 223 -----LAGEA----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp -----EETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----EcCCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00000 01123468999999999999999987654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-12 Score=110.08 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=70.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.|++ ..+++++.+|+.+ ++++ ||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999976544 38999999 888887764 4679999999865 4553 898854
Q ss_pred -------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 214 -------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
.+|++++++|+| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 569999999999 8988887653
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=105.96 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=75.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC----c-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP----P-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p----~-~D~i~~ 213 (301)
..+..+|||||||+|..+..+++.+|+.+++++|+ +++++.|++ .++|+++.+|+.+..| . ||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 55678999999999999999999889999999999 888887764 3589999999987433 3 999988
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++++.+.|+| ||.+++.+...
T Consensus 149 ~~~~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAAKAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp ETTSSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred cCcHHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 899999999999 77776644433
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-11 Score=105.74 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=80.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
..++ ..++ +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+.++
T Consensus 102 ~~i~-~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 178 (277)
T 1o54_A 102 SFIA-MMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 178 (277)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHH-HHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc
Confidence 3455 5555 667789999999999999999999 78999999999 888887764 2689999999987665
Q ss_pred c--chhHHH------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P--ANAFLF------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. +|+|++ .+|+++.++|+| ||.+++..
T Consensus 179 ~~~~D~V~~~~~~~~~~l~~~~~~L~p---gG~l~~~~ 213 (277)
T 1o54_A 179 EKDVDALFLDVPDPWNYIDKCWEALKG---GGRFATVC 213 (277)
T ss_dssp CCSEEEEEECCSCGGGTHHHHHHHEEE---EEEEEEEE
T ss_pred CCccCEEEECCcCHHHHHHHHHHHcCC---CCEEEEEe
Confidence 3 999998 899999999999 88888776
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-11 Score=100.63 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=72.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~--~D~i~~--- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ .++++++.+|+.+ + ++. +|+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 888887764 3689999999986 4 543 888876
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|++++++|+| ||.+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 155 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK 155 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEE
Confidence 399999999999 8887764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=101.83 Aligned_cols=121 Identities=9% Similarity=0.088 Sum_probs=93.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--c-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP--P-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p--~-~D~i~~-- 213 (301)
.++..+|+|||||+|.+++.+++.+|..+++++|+ |.+++.|++ .++|++..+|.++.++ . ||+|++
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 34557999999999999999999999999999999 888888875 4689999999998543 3 898764
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.||....+.|++ ++++++.-. . ....+++||.+.||.+++
T Consensus 99 mGg~lI~~IL~~~~~~L~~---~~~lIlq~~-~-----------------------------~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 99 MGGTLIRTILEEGAAKLAG---VTKLILQPN-I-----------------------------AAWQLREWSEQNNWLITS 145 (244)
T ss_dssp ECHHHHHHHHHHTGGGGTT---CCEEEEEES-S-----------------------------CHHHHHHHHHHHTEEEEE
T ss_pred CchHHHHHHHHHHHHHhCC---CCEEEEEcC-C-----------------------------ChHHHHHHHHHCCCEEEE
Confidence 888888888887 666555421 0 134568899999999876
Q ss_pred EEec---CCceeEEEEe
Q 043533 287 ITPI---FGMKSLIEVY 300 (301)
Q Consensus 287 ~~~~---~~~~~~i~a~ 300 (301)
..-+ .-++-+|.+.
T Consensus 146 E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 146 EAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEE
Confidence 5543 2357777765
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=98.01 Aligned_cols=132 Identities=9% Similarity=0.058 Sum_probs=91.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHH----hcCCCCCCeEEEeCCCCCC-----CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAV----ANLPEADNLKYIAGDMLRF-----IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~----~~a~~~~ri~~~~~D~~~~-----~p~-~D~i~~- 213 (301)
+.+..+|||+|||+|.++..+++. .|+.+++++|+ +.++ +.+++..++.++.+|+..+ ++. +|+|++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567789999999999999999986 57889999999 6553 3343357899999998763 223 899887
Q ss_pred -------HHH-HHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 -------KIL-KKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 -------~iL-~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
++| +.+++.|+| ||++++.-.... .|...-. +-...+..+.|+++||+..
T Consensus 154 ~a~~~~~~il~~~~~~~Lkp---GG~lvisik~~~--------------~d~t~~~-----~e~~~~~~~~L~~~gf~~~ 211 (232)
T 3id6_C 154 IAQPDQTDIAIYNAKFFLKV---NGDMLLVIKARS--------------IDVTKDP-----KEIYKTEVEKLENSNFETI 211 (232)
T ss_dssp CCCTTHHHHHHHHHHHHEEE---EEEEEEEEC---------------------CCS-----SSSTTHHHHHHHHTTEEEE
T ss_pred CCChhHHHHHHHHHHHhCCC---CeEEEEEEccCC--------------cccCCCH-----HHHHHHHHHHHHHCCCEEE
Confidence 444 556669999 898888732111 1111000 0112334567788999999
Q ss_pred EEEecCC---ceeEEEEe
Q 043533 286 KITPIFG---MKSLIEVY 300 (301)
Q Consensus 286 ~~~~~~~---~~~~i~a~ 300 (301)
+...+.. .+.++.++
T Consensus 212 ~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 212 QIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEECTTTCSSCEEEEEE
T ss_pred EEeccCCCcCceEEEEEE
Confidence 9988733 47777765
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=98.43 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=89.6
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCC--CCCCc--chhHHH--
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDML--RFIPP--ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~--~~~p~--~D~i~~-- 213 (301)
+.+..+||||||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+. .+++. ||+|++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 789999999 888888774 337999999963 35553 898873
Q ss_pred ----------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCC
Q 043533 214 ----------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 265 (301)
Q Consensus 214 ----------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 265 (301)
.+|+++.+.|+| ||+++++-.. .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~---~----------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPD---K----------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEES---C-----------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecc---c-----------------------
Confidence 589999999999 8888875211 0
Q ss_pred ccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 266 KERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 266 ~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
.....++.+++++.||+...+....+
T Consensus 183 -~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 183 -EKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred -HhHHHHHHHHHHHcCCceEEEEecCC
Confidence 01246778999999998877766544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-11 Score=105.02 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=75.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-CC---cchhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--F-IP---PANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~-~p---~~D~i 211 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +++++.|++ .++|+++.+|+.+ + ++ .||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 55678999999999999999999998 899999999 888887764 3689999999865 2 22 39999
Q ss_pred HH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 212 LF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 212 ~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++ ..|+++++.|+| ||.+++.+...
T Consensus 141 ~~d~~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDADKPNNPHYLRWALRYSRP---GTLIIGDNVVR 173 (248)
T ss_dssp EECSCGGGHHHHHHHHHHTCCT---TCEEEEECCSG
T ss_pred EECCchHHHHHHHHHHHHhcCC---CeEEEEeCCCc
Confidence 85 899999999999 88776655543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=106.27 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=87.4
Q ss_pred HHHHhhhhhcc-cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCe--------EEEe-CCCCCC
Q 043533 137 FVVKSECKQIF-EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNL--------KYIA-GDMLRF 204 (301)
Q Consensus 137 ~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri--------~~~~-~D~~~~ 204 (301)
.++ +.++ . ....+|||||||+|.++..++++. ..+++++|+ +.+++.+.+ ..++ .+.. .|+..+
T Consensus 27 ~~L-~~~~--~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (232)
T 3opn_A 27 KAL-KEFH--LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG 102 (232)
T ss_dssp HHH-HHTT--CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred HHH-HHcC--CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence 345 5554 3 235699999999999999999883 349999999 777776543 2333 3333 333322
Q ss_pred CCc---chhHHH---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh-hccccCCccCCHHHHHHHH
Q 043533 205 IPP---ANAFLF---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV-MSVNATGKERTESEWAKLF 277 (301)
Q Consensus 205 ~p~---~D~i~~---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~g~~rt~~e~~~ll 277 (301)
.++ +|++++ .+|++++++|+| ||+++++- -|..... ....+-. .+........+.+++.+++
T Consensus 103 ~~d~~~~D~v~~~l~~~l~~i~rvLkp---gG~lv~~~--~p~~e~~------~~~~~~~G~~~d~~~~~~~~~~l~~~l 171 (232)
T 3opn_A 103 RPSFTSIDVSFISLDLILPPLYEILEK---NGEVAALI--KPQFEAG------REQVGKNGIIRDPKVHQMTIEKVLKTA 171 (232)
T ss_dssp CCSEEEECCSSSCGGGTHHHHHHHSCT---TCEEEEEE--CHHHHSC------HHHHC-CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEhhhHHHHHHHHHHhccC---CCEEEEEE--CcccccC------HHHhCcCCeecCcchhHHHHHHHHHHH
Confidence 232 788877 999999999999 89888842 1100000 0000000 0000001123788999999
Q ss_pred HhCCCceeEEEec
Q 043533 278 FDAVFSHYKITPI 290 (301)
Q Consensus 278 ~~aGf~~~~~~~~ 290 (301)
+++||++..+...
T Consensus 172 ~~aGf~v~~~~~~ 184 (232)
T 3opn_A 172 TQLGFSVKGLTFS 184 (232)
T ss_dssp HHHTEEEEEEEEC
T ss_pred HHCCCEEEEEEEc
Confidence 9999999987654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=101.40 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=88.4
Q ss_pred cCCCeEEEecCCc--cHHHHHH-HHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C--C---c-c
Q 043533 148 EGLGSLVDVGGGN--VSFSRII-SEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---I--P---P-A 208 (301)
Q Consensus 148 ~~~~~vlDvGgG~--G~~~~~l-~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~--p---~-~ 208 (301)
.+..+|||||||+ +.++.++ .+..|+.+++++|. |.|+++++. ..+++|+.+|+.++ + | . +
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 3344444 45689999999999 999999975 24799999999763 1 1 1 4
Q ss_pred h-----hHHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCC
Q 043533 209 N-----AFLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERT 269 (301)
Q Consensus 209 D-----~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt 269 (301)
| ++++ .+|++++++|+| ||.|++.+...+..... . ....+..-........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~~--~---~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQE--V---GRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHHH--H---HHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHHH--H---HHHHHHHHhcCCCCccCC
Confidence 4 2332 599999999999 89888888755432111 1 111221111112235689
Q ss_pred HHHHHHHHHhCCCceeE
Q 043533 270 ESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~ 286 (301)
.+|+.++|. ||+.++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999994 999764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-11 Score=109.83 Aligned_cols=94 Identities=24% Similarity=0.377 Sum_probs=78.7
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C--CCeEEEeCCCCCCCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A--DNLKYIAGDMLRFIP 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~--~ri~~~~~D~~~~~p 206 (301)
.++ +.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ . .+++|+.+|++++++
T Consensus 213 ~ll-~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~ 289 (375)
T 4dcm_A 213 FFM-QHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 289 (375)
T ss_dssp HHH-HTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred HHH-HhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence 355 6665 34458999999999999999999999999999999 888888775 1 268899999998766
Q ss_pred c--chhHHH----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P--ANAFLF----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~--~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. ||+|++ ++++++++.|+| ||.++++.
T Consensus 290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 4 999885 689999999999 89888864
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-11 Score=101.43 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=71.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~--~D~i~~--- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ .+++.++.+|+.+ + ++. +|.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 467999999999999999999999999999999 888887764 3679999999876 3 443 776643
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+++++.|+| ||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 589999999999 88887753
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-11 Score=97.73 Aligned_cols=92 Identities=17% Similarity=0.296 Sum_probs=75.2
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-- 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-- 206 (301)
.++ +.++ .....+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.++++
T Consensus 24 ~~~-~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 24 LIM-CLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHH-HHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHH-HhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 345 5555 5667899999999999999999987 79999999 888877764 2689999999866333
Q ss_pred -cchhHHH--------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 -PANAFLF--------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 -~~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.||+|++ .+++++++.|+| ||.+++..
T Consensus 99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~---gG~l~~~~ 134 (192)
T 1l3i_A 99 PDIDIAVVGGSGGELQEILRIIKDKLKP---GGRIIVTA 134 (192)
T ss_dssp CCEEEEEESCCTTCHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCEEEECCchHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 4898886 899999999999 88887765
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.7e-11 Score=98.79 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=89.1
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CC
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---IP 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~p 206 (301)
++ ..++ .....+|||||||+|.++..+++. ..+++++|+ +++++.|++ .++++++.+|+.+. .+
T Consensus 47 ~l-~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 47 TL-AALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HH-HHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HH-HhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 45 5555 666789999999999999999998 789999999 888887764 23899999999873 23
Q ss_pred cchhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhC
Q 043533 207 PANAFLF------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA 280 (301)
Q Consensus 207 ~~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~a 280 (301)
.||+|++ .+++++++.|+| ||++++..... .+..++.+++++.
T Consensus 122 ~~D~v~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~ 170 (204)
T 3njr_A 122 LPEAVFIGGGGSQALYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLTQLHARH 170 (204)
T ss_dssp CCSEEEECSCCCHHHHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHHHHHHHH
T ss_pred CCCEEEECCcccHHHHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHHHHHHhC
Confidence 4899887 489999999999 89887754311 0234566778888
Q ss_pred CCceeEEE
Q 043533 281 VFSHYKIT 288 (301)
Q Consensus 281 Gf~~~~~~ 288 (301)
|+++.++.
T Consensus 171 g~~i~~i~ 178 (204)
T 3njr_A 171 GGQLLRID 178 (204)
T ss_dssp CSEEEEEE
T ss_pred CCcEEEEE
Confidence 88777653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-11 Score=106.48 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=76.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~ 207 (301)
...++ +.++ ..+..+|||||||+|.++..+++..| .+++++|+ +.+++.+++ .++++++.+|+..+++.
T Consensus 80 ~~~~~-~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (235)
T 1jg1_A 80 VAIML-EIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 155 (235)
T ss_dssp HHHHH-HHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHH-HhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence 34455 5555 66678999999999999999999988 89999998 888887764 24699999998556553
Q ss_pred ---chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 ---ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 ---~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||+|++ .+.+++.+.|+| ||++++.-
T Consensus 156 ~~~fD~Ii~~~~~~~~~~~~~~~L~p---gG~lvi~~ 189 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPEPLIEQLKI---GGKLIIPV 189 (235)
T ss_dssp GCCEEEEEECSBBSSCCHHHHHTEEE---EEEEEEEE
T ss_pred CCCccEEEECCcHHHHHHHHHHhcCC---CcEEEEEE
Confidence 899987 677899999999 78777654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=100.99 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=73.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--CC-----cchhHHH-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRF--IP-----PANAFLF- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~--~p-----~~D~i~~- 213 (301)
.+..+|||||||+|..+..+++. +|+.+++++|+ +++++.|+. .++|+++.+|+.+. ++ .||+|++
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 34579999999999999999998 78999999999 888888764 57899999999763 22 2898885
Q ss_pred -------HHHHHHHH-hcccCCCCcEEEEEee
Q 043533 214 -------KILKKRRE-AIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -------~iL~~~~~-aL~p~~~gg~l~i~e~ 237 (301)
.+|+++++ .|+| ||++++.+.
T Consensus 160 ~~~~~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 160 NAHANTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp SSCSSHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred CchHhHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 88999997 9999 898888765
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-11 Score=111.60 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=80.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCeEE
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-----------------ADNLKY 196 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-----------------~~ri~~ 196 (301)
..++ ..++ .....+|||||||+|.++..+++. .|+.+++++|+ +.+++.|++ .+++++
T Consensus 95 ~~~l-~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 95 NMIL-SMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHH-HHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHH-HhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 3355 5555 667789999999999999999998 68899999999 888777654 268999
Q ss_pred EeCCCCCC---CCc--chhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhh---hhchhhccc
Q 043533 197 IAGDMLRF---IPP--ANAFLF------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKF---LFDIVMSVN 262 (301)
Q Consensus 197 ~~~D~~~~---~p~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~---~~d~~~~~~ 262 (301)
+.+|+.+. ++. ||+|++ .++++++++|+| ||.+++..........- ...... .+.......
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~ 246 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH---GGVCAVYVVNITQVIEL--LDGIRTCELALSCEKISE 246 (336)
T ss_dssp EESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEE---EEEEEEEESSHHHHHHH--HHHHHHHTCCEEEEEEEC
T ss_pred EECChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCC---CcEEEEEeCCHHHHHHH--HHHHHhcCCCcccceEEE
Confidence 99999872 343 999987 789999999999 89888766422111000 000000 000000000
Q ss_pred cCCc-------cCCHHHHHHHHHhCCCceeEEEec
Q 043533 263 ATGK-------ERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 263 ~~g~-------~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
...+ .+...+|.+.|+++||+++++...
T Consensus 247 ~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~ 281 (336)
T 2b25_A 247 VIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQ 281 (336)
T ss_dssp CCCCCEEECC-------------------------
T ss_pred ecccceEEEeecccccchhhhhccccccccccccc
Confidence 0000 122238999999999998886543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=97.44 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=74.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
+....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++. +|+|++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 355689999999999999999998765 8999999 888877664 3689999999987 6653 888761
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|++++++|+| ||.+++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 789999999999 89998887643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-11 Score=102.57 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CCc--chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF----IPP--ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~----~p~--~D~i~~-- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ .++++++.+|+.+. ++. +|.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999 888877653 35799999997652 443 787765
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++++++++|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 399999999999 88777654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=104.41 Aligned_cols=116 Identities=11% Similarity=0.128 Sum_probs=90.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC-CC---Cc-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR-FI---PP-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~-~~---p~-~D~i 211 (301)
++..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+ .. +. ||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998878889999999 888877653 4789999999876 21 33 8988
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHH
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 276 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~l 276 (301)
++ .++++++++|+| ||.+++... .. + ++ .....++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~----~~----~------~~----------~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGE----SI----W------LD----------LELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEEC----CT----T------TC----------HHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecC----Cc----c------cc----------hHHHHHHHHH
Confidence 85 679999999999 787776521 00 0 10 1145678899
Q ss_pred HHhCCCceeEEEec
Q 043533 277 FFDAVFSHYKITPI 290 (301)
Q Consensus 277 l~~aGf~~~~~~~~ 290 (301)
++++||..+++...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999999887654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=94.76 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~- 207 (301)
..++ +.++ ..+..+|||||||+|.++..+++ +..+++++|. +.+++.+++ .++++++.+|+.++++.
T Consensus 25 ~~~~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 99 (183)
T 2yxd_A 25 AVSI-GKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKL 99 (183)
T ss_dssp HHHH-HHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGC
T ss_pred HHHH-HHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCC
Confidence 3455 5555 56678999999999999999998 7889999999 888887765 26899999999775553
Q ss_pred -chhHHH-------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh
Q 043533 208 -ANAFLF-------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD 279 (301)
Q Consensus 208 -~D~i~~-------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~ 279 (301)
||+|++ .+++++++. | ||.+++..... . +..++.+++++
T Consensus 100 ~~D~i~~~~~~~~~~~l~~~~~~--~---gG~l~~~~~~~-----~-----------------------~~~~~~~~l~~ 146 (183)
T 2yxd_A 100 EFNKAFIGGTKNIEKIIEILDKK--K---INHIVANTIVL-----E-----------------------NAAKIINEFES 146 (183)
T ss_dssp CCSEEEECSCSCHHHHHHHHHHT--T---CCEEEEEESCH-----H-----------------------HHHHHHHHHHH
T ss_pred CCcEEEECCcccHHHHHHHHhhC--C---CCEEEEEeccc-----c-----------------------cHHHHHHHHHH
Confidence 898886 889999888 8 89888876311 0 13556788899
Q ss_pred CCCceeEE
Q 043533 280 AVFSHYKI 287 (301)
Q Consensus 280 aGf~~~~~ 287 (301)
+||+...+
T Consensus 147 ~g~~~~~~ 154 (183)
T 2yxd_A 147 RGYNVDAV 154 (183)
T ss_dssp TTCEEEEE
T ss_pred cCCeEEEE
Confidence 99876654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=103.16 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=88.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CeEEEeCCCCC---------CCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----AD-------NLKYIAGDMLR---------FIP 206 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~-------ri~~~~~D~~~---------~~p 206 (301)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++ .. +++|..+|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46799999999998777766643 468999999 899998875 21 26787887722 234
Q ss_pred c--chhHHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc----------ch-----hhhhhh-hh
Q 043533 207 P--ANAFLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEE----------EH-----ELTETK-FL 254 (301)
Q Consensus 207 ~--~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~----------~~-----~~~~~~-~~ 254 (301)
. ||+|++ .+|++++++|+| ||.+++..+....-.. .+ .+.... ..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 2 898864 799999999999 8888776542111000 00 000000 00
Q ss_pred hchhhccccCC-------ccCCHHHHHHHHHhCCCceeEEEec
Q 043533 255 FDIVMSVNATG-------KERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 255 ~d~~~~~~~~g-------~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+........+ ...+.+++.++++++||+.+.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000000111 2467899999999999999988654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=101.43 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=100.9
Q ss_pred HHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------
Q 043533 121 QRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------- 190 (301)
Q Consensus 121 ~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------- 190 (301)
+.|+..+.. .....++ +.+........+|||||||+|.++..+++. +..+++++|+ +.+++.+++
T Consensus 10 r~~~~~~k~---~l~~~~~-~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 84 (313)
T 3bgv_A 10 RNFNNWMKS---VLIGEFL-EKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRR 84 (313)
T ss_dssp HHHHHHHHH---HHHHHHH-HHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred hhccHHHHH---HHHHHHH-HHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence 345544433 2233444 444322346789999999999999999884 6779999999 888877764
Q ss_pred ----CCCeEEEeCCCCC-C----C--C--cchhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 191 ----ADNLKYIAGDMLR-F----I--P--PANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 191 ----~~ri~~~~~D~~~-~----~--p--~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
..+++++.+|+.+ + + + .+|+|++ .+|++++++|+| ||.+++.......-
T Consensus 85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~l 161 (313)
T 3bgv_A 85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPNSFEL 161 (313)
T ss_dssp CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHH
T ss_pred cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCChHHH
Confidence 1379999999976 4 3 2 3888764 789999999999 88877765422100
Q ss_pred ----------ccchhhhhhhhhhch------------hh-c-cccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 243 ----------EEEHELTETKFLFDI------------VM-S-VNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 243 ----------~~~~~~~~~~~~~d~------------~~-~-~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
...+.... ..+.+. .+ . +.......+.+++.+++++.||+.+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 162 IRRLEASETESFGNEIYT-VKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp HHHHTTSSSSEEECSSEE-EEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred HHHHHhhccCccCCeeEE-EEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 00000000 000000 00 0 000112357899999999999999988754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-11 Score=103.45 Aligned_cols=124 Identities=10% Similarity=-0.013 Sum_probs=93.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC----Cc-chhHHH-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FI----PP-ANAFLF- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~----p~-~D~i~~- 213 (301)
....+|||||||+|..++.++..+|+.+++++|. +.+++.+++ -++|+++.+|+.+ +. .. ||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999999999999999999999999 888887764 3469999999876 33 23 999988
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
.+++.+++.|+| ||++++.... .... ...++.+.+++.||+..++
T Consensus 159 a~~~~~~ll~~~~~~Lkp---gG~l~~~~g~----~~~~----------------------e~~~~~~~l~~~G~~~~~~ 209 (249)
T 3g89_A 159 AVAPLCVLSELLLPFLEV---GGAAVAMKGP----RVEE----------------------ELAPLPPALERLGGRLGEV 209 (249)
T ss_dssp SSCCHHHHHHHHGGGEEE---EEEEEEEECS----CCHH----------------------HHTTHHHHHHHHTEEEEEE
T ss_pred CcCCHHHHHHHHHHHcCC---CeEEEEEeCC----CcHH----------------------HHHHHHHHHHHcCCeEEEE
Confidence 899999999999 8988875521 1100 0123566778889998887
Q ss_pred Eec--CC---ceeEEEEe
Q 043533 288 TPI--FG---MKSLIEVY 300 (301)
Q Consensus 288 ~~~--~~---~~~~i~a~ 300 (301)
..+ ++ .+.++...
T Consensus 210 ~~~~~p~~~~~R~l~~~~ 227 (249)
T 3g89_A 210 LALQLPLSGEARHLVVLE 227 (249)
T ss_dssp EEEECTTTCCEEEEEEEE
T ss_pred EEeeCCCCCCcEEEEEEE
Confidence 654 32 35555543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-11 Score=101.77 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=74.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-----Ccch
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I-----PPAN 209 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~-----p~~D 209 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++++++.+|+.+. + ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45678999999999999999999998 789999999 888887764 46799999998652 1 2389
Q ss_pred hHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 210 AFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 210 ~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+|++ .+|+++.+.|+| ||.+++.+...
T Consensus 136 ~v~~d~~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 170 (223)
T 3duw_A 136 FIFIDADKQNNPAYFEWALKLSRP---GTVIIGDNVVR 170 (223)
T ss_dssp EEEECSCGGGHHHHHHHHHHTCCT---TCEEEEESCSG
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCC---CcEEEEeCCCc
Confidence 9885 899999999999 88666655443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=102.89 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=70.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc-c---hhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP-A---NAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~-~---D~i~~-- 213 (301)
....+|||||||+|.++..+++. |+.+++++|+ +.+++.|++ .+|++|+.+|++++++. | |+|++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 35679999999999999999999 9999999999 888888774 34799999999886554 7 88765
Q ss_pred ----------------------------HHHHHHH-HhcccCCCCcEEEE
Q 043533 214 ----------------------------KILKKRR-EAIASNGERGKVII 234 (301)
Q Consensus 214 ----------------------------~iL~~~~-~aL~p~~~gg~l~i 234 (301)
.+++++. +.++| ||.+++
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 5799999 99999 786664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-11 Score=98.98 Aligned_cols=86 Identities=14% Similarity=0.273 Sum_probs=71.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc-chhHHH------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-ANAFLF------ 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-~D~i~~------ 213 (301)
.....+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ .++++++.+|+.+ +.+. ||+|++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4456799999999999999999885 48999999 888877764 4689999999987 4233 998887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++|+++++.|+| ||.+++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 669999999999 888877654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=95.11 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=84.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC-Cc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR--FI-PP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~--~~-p~-~D~i~~-- 213 (301)
+....+|||||||+|.++..++++ ..+++++|+ +.+++.|++ .++++++.+|+.. ++ +. ||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999988 789999999 889988875 2789999977654 13 33 887653
Q ss_pred ------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHH
Q 043533 214 ------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 275 (301)
Q Consensus 214 ------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ 275 (301)
.+|+++++.|+| ||++++............ . ....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----~----------------~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDME----K----------------DAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CHH----H----------------HHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHHH----H----------------HHHHHHHH
Confidence 578999999999 898888765322211110 0 01234455
Q ss_pred HHHhCCCceeEEEec
Q 043533 276 LFFDAVFSHYKITPI 290 (301)
Q Consensus 276 ll~~aGf~~~~~~~~ 290 (301)
.+...+|.+......
T Consensus 155 ~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 155 GLDQRVFTAMLYQPL 169 (185)
T ss_dssp HSCTTTEEEEEEEES
T ss_pred hCCCceEEEEEehhh
Confidence 555667888877665
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=99.76 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=70.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC--C--CCc--c
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------EADNLKYIAGDMLR--F--IPP--A 208 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------~~~ri~~~~~D~~~--~--~p~--~ 208 (301)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++. +
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4457899999999999999999999999999999 77776442 24689999999976 3 443 7
Q ss_pred hhHHH-------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 209 NAFLF-------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 209 D~i~~-------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|.|++ .+|++++++|+| ||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 87654 499999999999 88877653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-11 Score=103.13 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=76.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chhHHH----HHHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANAFLF----KILKK 218 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~i~~----~iL~~ 218 (301)
....+|||||||+|.++..+++..|+.+++++|+ +.+++.+++ ..++.++.+|+.+ +++. ||+|++ ..+++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~l~~ 163 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEE 163 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChhhHHH
Confidence 4567999999999999999999998899999999 888888775 5789999999976 6554 999988 88999
Q ss_pred HHHhcccCCCCcEEEEEeee
Q 043533 219 RREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 219 ~~~aL~p~~~gg~l~i~e~~ 238 (301)
++++|+| ||++++....
T Consensus 164 ~~~~L~p---gG~l~~~~~~ 180 (269)
T 1p91_A 164 LARVVKP---GGWVITATPG 180 (269)
T ss_dssp HHHHEEE---EEEEEEEEEC
T ss_pred HHHhcCC---CcEEEEEEcC
Confidence 9999999 8999888754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-11 Score=105.43 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=71.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC-c-chhHHH-----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIP-P-ANAFLF----- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p-~-~D~i~~----- 213 (301)
.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ . ||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 999988764 4789999999865 343 3 998886
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++++++++|+| ||.+++.-
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~ 200 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANC 200 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEe
Confidence 789999999999 77665544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-11 Score=103.39 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=75.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-----Cc-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--F-I-----PP-A 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~-~-----p~-~ 208 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +++++.|++ .++|+++.+|+.+ + + +. |
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 45678999999999999999999986 889999999 888877764 4689999999876 2 2 23 9
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ ..|+++.+.|+| ||.+++.+....
T Consensus 138 D~V~~d~~~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~ 174 (242)
T 3r3h_A 138 DFIFIDADKTNYLNYYELALKLVTP---KGLIAIDNIFWD 174 (242)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHEEE---EEEEEEECSSSS
T ss_pred eEEEEcCChHHhHHHHHHHHHhcCC---CeEEEEECCccC
Confidence 99987 889999999999 776666555544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-11 Score=101.33 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=75.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I------PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 208 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++++++.+|+.+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 45578999999999999999999988 889999999 888887764 36799999998652 2 339
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ .+++++++.|+| ||.+++.+...+
T Consensus 142 D~v~~~~~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDADKANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSCGGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cEEEECCCHHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 99886 889999999999 887777665543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=105.80 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=77.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc-c
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP-A 208 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~-~ 208 (301)
..++ +.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++..+. |
T Consensus 186 ~~ll-~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 186 QLLL-STLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHH-HHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHH-HhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 4456 6664 33457999999999999999999999999999999 788887764 33467889999874344 8
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|+|++ ++|++++++|+| ||.++++..
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 88765 789999999999 899888765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=107.13 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=79.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC--------CCCeEEEeC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANL-------PE--------ADNLKYIAG 199 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a-------~~--------~~ri~~~~~ 199 (301)
..++ +.++ .....+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ .++|+++.+
T Consensus 232 ~~ml-~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 232 SDVY-QQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHH-HHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHH-HhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 3455 5554 56778999999999999999999988889999999 7776666 32 268999988
Q ss_pred CCCC-C--C----CcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 200 DMLR-F--I----PPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 200 D~~~-~--~----p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
|.+. + + ..||+|++ ..|+++.+.|+| ||++++.+.+.+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred CccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 6543 2 2 23888876 788999999999 99999998776654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-10 Score=95.68 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CC-c-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F-IP-P-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~-~p-~-~D~i~~ 213 (301)
.....+|||+|||+|.++..+++++ |..+++++|+ +.+++.+++ .++++++.+|+.+ + .. . ||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4566899999999999999999985 7789999999 888888765 2689999999865 2 33 3 888764
Q ss_pred --------------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 214 --------------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 --------------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
++++++++.|+| ||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEcc
Confidence 689999999999 8988887653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=108.75 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=74.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
...++ +.+. ..+..+|||||||+|.++..+++ .|..+++++|+.++++.|++ .++|+++.+|+.+ ++|
T Consensus 147 ~~~il-~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~ 222 (480)
T 3b3j_A 147 QRAIL-QNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP 222 (480)
T ss_dssp HHHHH-HTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred HHHHH-Hhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC
Confidence 34456 5554 45568999999999999998887 57789999999657776654 3789999999988 677
Q ss_pred c-chhHHH-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 207 P-ANAFLF-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 207 ~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
. +|+|++ ..+.++++.|+| ||.+++
T Consensus 223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 6 998876 567788899999 787763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=96.26 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=67.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~--- 213 (301)
+....+|||||||+|.++..++...|+.+++++|+ +.+++.++. ..++++ .|... +.+. ||+|++
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35578999999999999999999999999999999 889988874 235665 67755 4444 898876
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..+.+++++|+| ||.++-++
T Consensus 125 LHlL~~~~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVLKQQDVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHHHHTTCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhhhhhHHHHHHHHHHhCC---CCEEEEeC
Confidence 455589999999 56544444
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=100.02 Aligned_cols=90 Identities=9% Similarity=0.258 Sum_probs=75.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--Cc-chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I--PP-ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~--p~-~D~i~ 212 (301)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ .++++++.+|+.+. . +. ||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 45678999999999999999999999999999999 888887764 26899999998762 2 23 89988
Q ss_pred H--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 213 F--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 213 ~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+ .+|+++.+.|+| ||.+++.+...
T Consensus 132 ~~~~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKGQYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGSCHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHHHHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 7 899999999999 88777765433
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-10 Score=103.33 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=70.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
.....+|||||||+|.++..++++ +..+++++|+.++++.|++ .++|+++.+|+.+ ++|. +|+|++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 445689999999999999999988 6679999999667777764 4679999999988 7773 999885
Q ss_pred -----------HHHHHHHHhcccCCCCcEEE
Q 043533 214 -----------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.+|+++.+.|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 889999999999 78765
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=103.24 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=71.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-c-chh
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIP-P-ANA 210 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p-~-~D~ 210 (301)
+... ..+..+|||||||+|.++..++++ +..+++++|..++++.|++ .++|+++.+|+.+ ++| . +|+
T Consensus 58 ~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 134 (340)
T 2fyt_A 58 QNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDV 134 (340)
T ss_dssp HCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred hhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEE
Confidence 4444 556789999999999999999987 4569999999558777764 3789999999987 677 3 998
Q ss_pred HHH--------------HHHHHHHHhcccCCCCcEEE
Q 043533 211 FLF--------------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 211 i~~--------------~iL~~~~~aL~p~~~gg~l~ 233 (301)
|++ .+|+++++.|+| ||.++
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 884 689999999999 88776
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-10 Score=99.54 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 043533 149 GLGSLVDVGGGNVS----FSRIISEAFP----GIKCTVLDL-PHAVANLPEA---------------------------- 191 (301)
Q Consensus 149 ~~~~vlDvGgG~G~----~~~~l~~~~P----~~~~~~~Dl-p~~~~~a~~~---------------------------- 191 (301)
+..+|+|+|||||. +++.|++..| +.+++++|+ +.+++.|+++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34689999999998 6677777755 468999999 8888877531
Q ss_pred ---------CCeEEEeCCCCC-CCC--c-chhHHH-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 192 ---------DNLKYIAGDMLR-FIP--P-ANAFLF-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 192 ---------~ri~~~~~D~~~-~~p--~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++|+|..+|+.+ ++| . +|+|++ +++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 369999999998 565 3 999887 899999999999 776655
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.7e-10 Score=109.76 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=73.8
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCeEEEeCCCCC-CC
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------------~~ri~~~~~D~~~-~~ 205 (301)
+.+. ..+..+|||||||+|.++..|++.. |..+++++|+ +.+++.|++ ..+|+|+.+|+.+ +.
T Consensus 715 elL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~ 792 (950)
T 3htx_A 715 KHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS 792 (950)
T ss_dssp HHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT
T ss_pred HHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc
Confidence 4444 3467899999999999999999998 5679999999 888887753 2579999999987 65
Q ss_pred Cc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 206 PP--ANAFLF-------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 206 p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+. ||+|++ .+++++++.|+| | .++|..+
T Consensus 793 ~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTP 835 (950)
T 3htx_A 793 RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTP 835 (950)
T ss_dssp TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEEC
T ss_pred ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEec
Confidence 53 999886 589999999999 6 5555543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-10 Score=98.98 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=88.8
Q ss_pred HHHHhhhhhccc-CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCeEEEe-CCCCC----CCCc-
Q 043533 137 FVVKSECKQIFE-GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVAN-LPEADNLKYIA-GDMLR----FIPP- 207 (301)
Q Consensus 137 ~~~~~~~~~~~~-~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~-a~~~~ri~~~~-~D~~~----~~p~- 207 (301)
.++ +.+. .. ...+|||||||||.++..+++. +..+++++|+ +.|++. ++..+|+.... .|+.. .+|.
T Consensus 75 ~~l-~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 75 KAL-AVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHH-HHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHH-HhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 355 5554 33 3569999999999999999887 4568999999 788876 33356665443 34422 1332
Q ss_pred -chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-ccCCccCCHHHHHHHH
Q 043533 208 -ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-NATGKERTESEWAKLF 277 (301)
Q Consensus 208 -~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~g~~rt~~e~~~ll 277 (301)
+|++++ .+|+++++.|+| ||+++++- -|+-.... ...+..=.+ ......++.+++.+++
T Consensus 151 ~fD~v~~d~sf~sl~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~~------~~~~~~G~vrd~~~~~~~~~~v~~~~ 219 (291)
T 3hp7_A 151 LPSFASIDVSFISLNLILPALAKILVD---GGQVVALV--KPQFEAGR------EQIGKNGIVRESSIHEKVLETVTAFA 219 (291)
T ss_dssp CCSEEEECCSSSCGGGTHHHHHHHSCT---TCEEEEEE--CGGGTSCG------GGCC-CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeHhhHHHHHHHHHHHcCc---CCEEEEEE--CcccccCh------hhcCCCCccCCHHHHHHHHHHHHHHH
Confidence 676554 899999999999 89998862 11111110 001100000 0001124678899999
Q ss_pred HhCCCceeEEEec
Q 043533 278 FDAVFSHYKITPI 290 (301)
Q Consensus 278 ~~aGf~~~~~~~~ 290 (301)
+++||++..+...
T Consensus 220 ~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 220 VDYGFSVKGLDFS 232 (291)
T ss_dssp HHTTEEEEEEEEC
T ss_pred HHCCCEEEEEEEC
Confidence 9999999887654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-10 Score=99.89 Aligned_cols=90 Identities=7% Similarity=0.061 Sum_probs=74.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I------PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 208 (301)
..+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++++++.+|+.+. + ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999987 789999999 888877764 36899999998652 2 338
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
|+|++ .+++++.+.|+| ||.+++.+...
T Consensus 147 D~v~~d~~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDADKENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCCHHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99887 789999999999 78777665443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-10 Score=97.57 Aligned_cols=83 Identities=7% Similarity=0.116 Sum_probs=69.3
Q ss_pred eEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCC---CC-Cc-chhHHH---
Q 043533 152 SLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMLR---FI-PP-ANAFLF--- 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~D~~~---~~-p~-~D~i~~--- 213 (301)
+|||||||+|..+..+++..| +.+++++|+ +++++.|++ . +||+++.+|+.+ .+ +. ||+|++
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~ 138 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVS 138 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCc
Confidence 999999999999999999875 889999999 888887764 3 689999999865 24 33 999987
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..++++.+.|+| ||.+++.+.
T Consensus 139 ~~~~~~~l~~~~~~Lkp---GG~lv~dn~ 164 (221)
T 3dr5_A 139 PMDLKALVDAAWPLLRR---GGALVLADA 164 (221)
T ss_dssp TTTHHHHHHHHHHHEEE---EEEEEETTT
T ss_pred HHHHHHHHHHHHHHcCC---CcEEEEeCC
Confidence 789999999999 676555443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.7e-10 Score=98.72 Aligned_cols=96 Identities=13% Similarity=0.226 Sum_probs=79.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLR- 203 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~- 203 (301)
..++ ..++ .....+|||+|||+|.++..+++. .|..+++++|+ +++++.+++ .++++++.+|+.+
T Consensus 89 ~~i~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 89 AQIV-HEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHH-HHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 3455 5555 666789999999999999999996 68899999999 888777653 2589999999987
Q ss_pred CCCc--chhHHH------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 204 FIPP--ANAFLF------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 204 ~~p~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+++. +|+|++ .+|+++.++|+| ||++++...
T Consensus 166 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVLDMLAPWEVLDAVSRLLVA---GGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEEESSCGGGGHHHHHHHEEE---EEEEEEEES
T ss_pred CCCCCceeEEEECCcCHHHHHHHHHHhCCC---CCEEEEEeC
Confidence 5543 999988 899999999999 898888764
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=7e-10 Score=91.95 Aligned_cols=86 Identities=8% Similarity=-0.007 Sum_probs=69.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--C-Cc-chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--I-PP-ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~-p~-~D~i~~-- 213 (301)
....+|||+|||+|.++..+++. +..+++++|+ +++++.+++ .++++++.+|+.+ . + +. ||+|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999988874 5668999999 889888875 2689999999876 2 3 23 888876
Q ss_pred ----------HHHHHHHH--hcccCCCCcEEEEEee
Q 043533 214 ----------KILKKRRE--AIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------~iL~~~~~--aL~p~~~gg~l~i~e~ 237 (301)
++++++.+ .|+| ||.+++...
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~ 154 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTRE---GTVAVVERA 154 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCT---TCEEEEEEE
T ss_pred CCCcchhhHHHHHHHHHhcCccCC---CeEEEEEec
Confidence 78999998 9999 887777544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=99.31 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=68.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-c-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIP-P-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p-~-~D~i~~--- 213 (301)
..+..+|||||||+|.++..++++ +..+++++|..++++.|++ .++|+++.+|+.+ ++| . +|+|++
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 445689999999999999999886 5569999999667776654 4689999999987 677 3 998874
Q ss_pred -----------HHHHHHHHhcccCCCCcEEE
Q 043533 214 -----------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.+|+++.+.|+| ||.++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 788999999999 78775
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-10 Score=96.10 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=76.8
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-- 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-- 206 (301)
.++ +.+. .....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ .++++++.+|+..+++
T Consensus 68 ~~~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 144 (215)
T 2yxe_A 68 MMC-ELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL 144 (215)
T ss_dssp HHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred HHH-HhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence 455 5554 5667899999999999999999987 7789999999 888887764 2579999999866554
Q ss_pred c-chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P-ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~-~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. ||+|++ .+.+++++.|+| ||++++..
T Consensus 145 ~~fD~v~~~~~~~~~~~~~~~~L~p---gG~lv~~~ 177 (215)
T 2yxe_A 145 APYDRIYTTAAGPKIPEPLIRQLKD---GGKLLMPV 177 (215)
T ss_dssp CCEEEEEESSBBSSCCHHHHHTEEE---EEEEEEEE
T ss_pred CCeeEEEECCchHHHHHHHHHHcCC---CcEEEEEE
Confidence 2 999987 666899999999 88888764
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-10 Score=95.56 Aligned_cols=85 Identities=18% Similarity=0.306 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCC----CCc-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------------ADNLKYIAGDMLRF----IPP- 207 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------------~~ri~~~~~D~~~~----~p~- 207 (301)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++. ++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999998 777765532 25899999998763 332
Q ss_pred -chhHHH-------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 208 -ANAFLF-------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 208 -~D~i~~-------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+|.|++ .+++++.+.|+| ||.+++.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 565543 599999999999 8887774
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=91.02 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=65.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C-------------------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP--GIKCTVLDLPHAVANLPEADNLKYIAGDMLR-F------------------- 204 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P--~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~------------------- 204 (301)
+....+|||||||+|.++..+++++| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhhH
Confidence 35567999999999999999999998 6899999995532 24679999999977 4
Q ss_pred ------CCc--chhHHH----------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 205 ------IPP--ANAFLF----------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 205 ------~p~--~D~i~~----------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
++. ||+|++ .+|++++++|+| ||.+++.
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~ 153 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVK 153 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 342 888763 278999999999 8877663
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-10 Score=97.15 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=73.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--FIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~~p~-~D~i~~- 213 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|+.+ +... ||+|++
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 133 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD 133 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence 34568999999999999999999988 889999999 888887764 3589999999865 3222 899886
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++++++.|+| ||.+++.+...
T Consensus 134 ~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 134 CDVFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp TTTSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred CChhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 899999999999 78776655443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=93.37 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=77.9
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-Cc
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI-PP 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~-p~ 207 (301)
.++ ..++ .....+|||+|||+|.++..+++. ..+++++|+ +++++.+++ .++++++.+|+.+.. +.
T Consensus 82 ~~~-~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 82 YIA-LKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHH-HhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 345 5555 566789999999999999999998 779999998 888877764 278999999998855 43
Q ss_pred --chhHHH------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 --ANAFLF------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 --~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+|+|++ .+++++.+.|+| ||++++...
T Consensus 157 ~~~D~v~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFVDVREPWHYLEKVHKSLME---GAPVGFLLP 191 (248)
T ss_dssp TCBSEEEECSSCGGGGHHHHHHHBCT---TCEEEEEES
T ss_pred CcccEEEECCcCHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 999987 899999999999 898888774
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-10 Score=96.51 Aligned_cols=89 Identities=9% Similarity=0.174 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC------cc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR---FIP------PA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~---~~p------~~ 208 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ .++|+++.+|+.+ .++ .|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 45678999999999999999999864 889999999 888888775 3679999999743 232 38
Q ss_pred hhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 209 NAFLF-----------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 209 D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
|+|++ .+++.+ +.|+| ||.+++.+...
T Consensus 136 D~V~~d~~~~~~~~~~~~~~~~-~~Lkp---gG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLEKC-GLLRK---GTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT-TCCCT---TCEEEESCCCC
T ss_pred EEEEEcCCcccchHHHHHHHhc-cccCC---CeEEEEeCCCC
Confidence 98887 466666 89999 88776655543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-10 Score=95.47 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=75.9
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-- 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-- 206 (301)
..++ +.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+..+
T Consensus 67 ~~~~-~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 67 ARMT-ELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHH-HhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 4455 5555 667789999999999999999998 579999999 888887764 3579999999987432
Q ss_pred c-chhHHH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 P-ANAFLF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ~-~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
. ||+|++ .+..++++.|+| ||++++.-.
T Consensus 142 ~~~D~i~~~~~~~~~~~~~~~~L~p---gG~lv~~~~ 175 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPTALMTQLDE---GGILVLPVG 175 (210)
T ss_dssp CCEEEEEESSBCSSCCTHHHHTEEE---EEEEEEEEC
T ss_pred CCccEEEEccchhhhhHHHHHhccc---CcEEEEEEc
Confidence 2 999988 666789999999 888777543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-10 Score=98.96 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=73.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I--------- 205 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~--------- 205 (301)
..+..+|||||||+|..+..+++..| ..+++++|. +.+++.+++ .++++++.+|+.+. +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45678999999999999999999988 789999999 888877764 25699999998652 1
Q ss_pred --------CcchhHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 206 --------PPANAFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 206 --------p~~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
..||+|++ .+|+++.+.|+| ||.+++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 23899887 889999999999 78777655443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=88.03 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=68.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-C--------CCc--chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-F--------IPP--ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~--------~p~--~D~i~~- 213 (301)
.....+|||||||+|.++..+++. .|+.+++++|+..+++ ..+++++.+|+.+ + ++. ||+|++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 355679999999999999999999 4789999999954433 2689999999987 4 553 887765
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++++.|+| ||.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence 679999999999 888887664
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-10 Score=96.62 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=72.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------Cc-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--F-I------PP- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~-~------p~- 207 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++|+++.+|+.+ + + +.
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 45678999999999999999999987 789999999 888877764 3589999999865 2 2 33
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
||+|++ .+++++.+.|+| ||.+++.+.
T Consensus 148 fD~I~~d~~~~~~~~~l~~~~~~L~p---GG~lv~d~~ 182 (237)
T 3c3y_A 148 YDFGFVDADKPNYIKYHERLMKLVKV---GGIVAYDNT 182 (237)
T ss_dssp EEEEEECSCGGGHHHHHHHHHHHEEE---EEEEEEECT
T ss_pred cCEEEECCchHHHHHHHHHHHHhcCC---CeEEEEecC
Confidence 999987 899999999999 675554443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.7e-10 Score=96.78 Aligned_cols=86 Identities=10% Similarity=0.214 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC--------CC-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF--------IP- 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~--------~p- 206 (301)
.....+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ .+|++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45567999999999999999999999999999999 887776653 13699999999764 33
Q ss_pred c-chhHHH-----------------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 P-ANAFLF-----------------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 ~-~D~i~~-----------------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
. ||+|++ .+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 2 887765 468999999999 8888774
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-10 Score=96.57 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF---------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~---------- 213 (301)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++. ||+|++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 35689999999999999999987 568999999 8888877651111388899987 6653 887765
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccc----hhhhhhhhhhchhhcc------ccCCccCCHHHHHHHHHhCC
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEE----HELTETKFLFDIVMSV------NATGKERTESEWAKLFFDAV 281 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~----~~~~~~~~~~d~~~~~------~~~g~~rt~~e~~~ll~~aG 281 (301)
.+|++++++|+| ||.+++........... ..+............. ......++.+++.++ +|
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aG 204 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EG 204 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TT
T ss_pred HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cC
Confidence 889999999999 88888766432110000 0000000000000000 000114678888888 99
Q ss_pred CceeEEEecCC
Q 043533 282 FSHYKITPIFG 292 (301)
Q Consensus 282 f~~~~~~~~~~ 292 (301)
|+++++..+.+
T Consensus 205 f~~~~~~~~~~ 215 (260)
T 2avn_A 205 FETVDIRGIGV 215 (260)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEECCCC
Confidence 99999887643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-10 Score=98.97 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=74.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C------Cc-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--F-I------PP- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~-~------p~- 207 (301)
..+..+|||||||+|..+..+++..| +.+++++|+ +++++.|++ .++|+++.+|+.+ + + +.
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 45678999999999999999999988 789999999 888877764 3689999999865 2 2 23
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
||+|++ .+++++++.|+| ||.+++.+...
T Consensus 157 fD~V~~d~~~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADKDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCSTTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEEcCchHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 999986 899999999999 88776655443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.4e-10 Score=100.47 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
..++ .... +.+..+|||+|||+|.+++.++... |+.+++++|+ +.+++.|++ -++|+|+.+|+.+ +.+
T Consensus 193 ~~l~-~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 193 QALL-RLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHH-HHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHH-HHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 4455 5555 5667899999999999999999987 8999999999 888888875 2389999999987 433
Q ss_pred --cchhHHH-------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 --PANAFLF-------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 --~~D~i~~-------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+|++ .+++++++.|+| ||+++++.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 2687765 688999999999 89888864
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-10 Score=97.49 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=68.9
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CC----
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FI---- 205 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~---- 205 (301)
....++ +.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ... ++.+|+.+ +.
T Consensus 33 ~~~~il-~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 33 DRENDI-FLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPK 105 (261)
T ss_dssp HHHHHH-HTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCG
T ss_pred HHHHHH-HhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeeccccccc
Confidence 345566 6666 677789999999999999999987 468999999 889988775 111 22333332 22
Q ss_pred --Cc-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 206 --PP-ANAFLF-------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 206 --p~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+. ||+|++ .+|++++++| | ||++++.-.
T Consensus 106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 23 888775 6899999999 9 898887643
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-10 Score=91.93 Aligned_cols=96 Identities=7% Similarity=0.059 Sum_probs=72.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--- 204 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--- 204 (301)
..++ +.+. ......+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+.
T Consensus 20 ~~~~-~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (177)
T 2esr_A 20 GAIF-NMIG-PYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 96 (177)
T ss_dssp HHHH-HHHC-SCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHH-HHHH-hhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence 3444 4443 1345679999999999999999987 6679999999 888887764 25799999998762
Q ss_pred CCc-chhHHH----------HHHHHHH--HhcccCCCCcEEEEEee
Q 043533 205 IPP-ANAFLF----------KILKKRR--EAIASNGERGKVIIIDI 237 (301)
Q Consensus 205 ~p~-~D~i~~----------~iL~~~~--~aL~p~~~gg~l~i~e~ 237 (301)
.+. ||+|++ .+++.+. +.|+| ||.+++...
T Consensus 97 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~---gG~l~~~~~ 139 (177)
T 2esr_A 97 LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSE---QVMVVCETD 139 (177)
T ss_dssp BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCC---CcEEEEEEC
Confidence 233 887776 6677776 88999 777666543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-10 Score=101.04 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=72.6
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc-
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~- 207 (301)
.++ +.+. ..+..+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ +.|.
T Consensus 41 ~i~-~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 41 AIL-QNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHH-HTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHH-hccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 355 5554 456789999999999999999886 5679999999657666653 3789999999987 6666
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
+|+|++ ..+.++++.|+| ||.+++
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~ 153 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 153 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEES
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEE
Confidence 998886 678888999999 787764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-10 Score=97.53 Aligned_cols=92 Identities=21% Similarity=0.175 Sum_probs=77.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-CCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF-IPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~-~p~-~D~i~~---- 213 (301)
+.+..+|||+|||+|.++..+++..+..+++++|+ |.+++.+++ -++++++.+|+.+. .+. +|+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999998889999999 888887774 25789999999773 333 999988
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.+++++.+.|+| ||.+++......+
T Consensus 197 ~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 KTHKFLDKTFEFLKD---RGVIHYHETVAEK 224 (272)
T ss_dssp SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence 899999999999 8888877765433
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.1e-10 Score=102.24 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~---- 213 (301)
.....+|||||||+|.++..++++. ..+++++|...+++.+++ .++|+++.+|+.+ ++|. +|+|++
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4557899999999999999999884 349999999877776654 4779999999987 6666 998875
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++++.|+| ||.+++.+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecC
Confidence 689999999999 787765443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-10 Score=96.90 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPE---AD-------N---------------------- 193 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~---~~-------r---------------------- 193 (301)
...+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++ .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4579999999999999999998 78889999999 888887773 22 2
Q ss_pred ---eE-------------EEeCCCCCCC------C--cchhHHH--------------------HHHHHHHHhcccCCCC
Q 043533 194 ---LK-------------YIAGDMLRFI------P--PANAFLF--------------------KILKKRREAIASNGER 229 (301)
Q Consensus 194 ---i~-------------~~~~D~~~~~------p--~~D~i~~--------------------~iL~~~~~aL~p~~~g 229 (301)
++ |+.+|++++. + .||+|++ .++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 67 9999998854 3 3898875 689999999999 8
Q ss_pred cEEEEEee
Q 043533 230 GKVIIIDI 237 (301)
Q Consensus 230 g~l~i~e~ 237 (301)
|.++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 98887543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=99.93 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH-------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~------- 213 (301)
.++|||||||+|.++...+++. ..+++++|..++++.|++ .++|+++.+|+.+ ++|+ +|+|++
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 5799999999999998777764 358999999667776654 6889999999988 7887 999876
Q ss_pred -------HHHHHHHHhcccCCCCcEEE
Q 043533 214 -------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.++....+.|+| ||.++
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred cccchhhhHHHHHHhhCCC---CceEC
Confidence 778888899999 77654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.89 E-value=7.1e-10 Score=94.68 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=75.8
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCC--c-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRFIP--P- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~~p--~- 207 (301)
..++ +.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+..+ .
T Consensus 60 ~~~~-~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (231)
T 1vbf_A 60 IFML-DELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (231)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHH-HhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence 3455 5555 5667899999999999999999986 78999999 888887764 2289999999977443 2
Q ss_pred chhHHH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 ANAFLF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 ~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
||+|++ .+..++++.|+| ||++++...
T Consensus 135 fD~v~~~~~~~~~~~~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 135 YDRVVVWATAPTLLCKPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEEEEESSBBSSCCHHHHHTEEE---EEEEEEEEC
T ss_pred ccEEEECCcHHHHHHHHHHHcCC---CcEEEEEEc
Confidence 999887 667889999999 888887753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-10 Score=101.53 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=69.0
Q ss_pred cCCCeEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC-------c-chh
Q 043533 148 EGLGSLVDVGGG------NVSFSRIISEA-FPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIP-------P-ANA 210 (301)
Q Consensus 148 ~~~~~vlDvGgG------~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p-------~-~D~ 210 (301)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+.. ..++|+|+.+|+.+ +++ . ||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 346899999999 77777777765 69999999999 66632 36799999999987 554 3 899
Q ss_pred HHH----------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 211 FLF----------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 211 i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
|++ +.|++++++||| ||.+++.|..
T Consensus 292 VisdgsH~~~d~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDGSHINAHVRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECSCCCHHHHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECCcccchhHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 876 889999999999 8877777764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-10 Score=97.91 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=70.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
++..+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|+++. .+. ||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4568999999999999999998877889999999 888887653 47899999998752 233 89888
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ .++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 7 689999999999 7766554
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.6e-10 Score=93.68 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=73.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-----PGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRFI---- 205 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-----P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~~---- 205 (301)
.....+|||||||+|.++..+++.. |+.+++++|. +++++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4566899999999999999999986 6789999999 888877764 258999999997743
Q ss_pred C---cchhHHH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 206 P---PANAFLF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 206 p---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+ .||+|++ .+++++++.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELPEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSCCHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHHHHHHHhcCC---CcEEEEEEc
Confidence 2 2899987 788999999999 888777643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-10 Score=92.00 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=67.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC------Cc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI------PP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~------p~-~D~i~ 212 (301)
....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+.. +. ||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4567999999999999999887 45679999999 888888774 257999999987621 33 88877
Q ss_pred H----------HHHHHH--HHhcccCCCCcEEEEEe
Q 043533 213 F----------KILKKR--REAIASNGERGKVIIID 236 (301)
Q Consensus 213 ~----------~iL~~~--~~aL~p~~~gg~l~i~e 236 (301)
+ ..++.+ ++.|+| ||.+++..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~~~L~~---gG~l~~~~ 154 (187)
T 2fhp_A 122 LDPPYAKQEIVSQLEKMLERQLLTN---EAVIVCET 154 (187)
T ss_dssp ECCCGGGCCHHHHHHHHHHTTCEEE---EEEEEEEE
T ss_pred ECCCCCchhHHHHHHHHHHhcccCC---CCEEEEEe
Confidence 6 677777 778999 77766554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-09 Score=89.21 Aligned_cols=89 Identities=10% Similarity=0.313 Sum_probs=67.0
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC------------
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFI------------ 205 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~------------ 205 (301)
+. +.+. .+.+..+|||||||+|.++..++++ ..+++++|+.++. ..++++++.+|+.+..
T Consensus 16 i~-~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 16 LL-DRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----EIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HH-HHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----CCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HH-HHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----cCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 44 4444 2456789999999999999999988 7799999994331 2468999999987631
Q ss_pred --CcchhHHH----------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 206 --PPANAFLF----------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 206 --p~~D~i~~----------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+|+|++ .+|+.+.+.|+| ||.+++.-.
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 23677653 688999999999 887775443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-09 Score=98.45 Aligned_cols=95 Identities=12% Similarity=0.201 Sum_probs=76.5
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP- 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p- 206 (301)
..++ +.++ ..+..+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ .++++++.+|+.+..+
T Consensus 65 ~~l~-~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 65 ALFM-EWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHH-HhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 3455 5555 56678999999999999999999987 488999999 888887764 2569999999977332
Q ss_pred -c-chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 -P-ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 -~-~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. ||+|++ .+.+++.+.|+| ||++++..
T Consensus 142 ~~~fD~Iv~~~~~~~~~~~~~~~Lkp---gG~lvi~~ 175 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVPETWFTQLKE---GGRVIVPI 175 (317)
T ss_dssp GCCEEEEEECSBBSCCCHHHHHHEEE---EEEEEEEB
T ss_pred CCCeEEEEEcCCHHHHHHHHHHhcCC---CcEEEEEE
Confidence 2 999988 566888999999 88888764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-10 Score=96.28 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=73.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I------PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 208 (301)
..+..+|||||||+|..+..+++..| +.+++++|. +++++.|++ .++|+++.+|+.+. + ..|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 44578999999999999999999987 789999999 888887764 35899999997541 2 338
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
|+|++ .+++++.+.|+| ||.+++.+...
T Consensus 150 D~V~~d~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 185 (232)
T 3cbg_A 150 DLIFIDADKRNYPRYYEIGLNLLRR---GGLMVIDNVLW 185 (232)
T ss_dssp EEEEECSCGGGHHHHHHHHHHTEEE---EEEEEEECTTG
T ss_pred CEEEECCCHHHHHHHHHHHHHHcCC---CeEEEEeCCCc
Confidence 99886 889999999999 77776655443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-09 Score=91.83 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCC---cchh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRFIP---PANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~~p---~~D~ 210 (301)
.....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+....+ .||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4556899999999999999999884 7789999999 888877753 2489999999876322 2999
Q ss_pred HHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|++ .+++++++.|+| ||++++..
T Consensus 155 i~~~~~~~~~~~~~~~~Lkp---gG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAPVVPQALIDQLKP---GGRLILPV 182 (226)
T ss_dssp EEECSBBSSCCHHHHHTEEE---EEEEEEEE
T ss_pred EEECCchHHHHHHHHHhcCC---CcEEEEEE
Confidence 887 788999999999 88887754
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-09 Score=93.96 Aligned_cols=83 Identities=8% Similarity=0.087 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCCCcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRFIPPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~~p~~D~i~~--- 213 (301)
+.+.+|||||||+|.++..+++. + .+++++|+ +.+++.|++ .+|++++.+|..+-...||+|++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~ 148 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQE 148 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSC
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCC
Confidence 45689999999999999999988 7 89999999 999998875 35899999999763334999988
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ---KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..+++++++|+| ||.+++.
T Consensus 149 dp~~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 149 PDIHRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp CCHHHHHHHHTTEEE---EEEEEEE
T ss_pred ChHHHHHHHHHhcCC---CcEEEEE
Confidence 789999999999 7766664
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.7e-10 Score=89.57 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-------cchhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP-------PANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p-------~~D~i~~-- 213 (301)
...+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ .-+++++.+|+.+..+ .||+|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999999776 999999 888888775 2289999999876221 3888776
Q ss_pred -------HHHHHHH--HhcccCCCCcEEEEEee
Q 043533 214 -------KILKKRR--EAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -------~iL~~~~--~aL~p~~~gg~l~i~e~ 237 (301)
.+++.+. +.|+| ||.+++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~~ 148 (171)
T 1ws6_A 119 PYAMDLAALFGELLASGLVEA---GGLYVLQHP 148 (171)
T ss_dssp CTTSCTTHHHHHHHHHTCEEE---EEEEEEEEE
T ss_pred CCchhHHHHHHHHHhhcccCC---CcEEEEEeC
Confidence 6777777 99999 787666543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=87.70 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=74.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CC---Cc--chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FI---PP--ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~---p~--~D~i~~---- 213 (301)
+....+|||||||. +.+|. +.+++.|++ ..+++++.+|+.+ ++ +. ||+|++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 66778999999996 23888 888887775 3469999999977 54 44 998886
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVF 282 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf 282 (301)
++|++++++|+| ||++++.+....... . ....++.++|.++|+++||
T Consensus 74 ~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~--------~-----------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRP---GGCLFLKEPVETAVD--------N-----------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEE---EEEEEEEEEEESSSC--------S-----------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCHHHHHHHHHHHCCC---CEEEEEEcccccccc--------c-----------ccccCCHHHHHHHHHHCCC
Confidence 899999999999 899888554322110 0 1123688999999999999
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-09 Score=97.84 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC--C-CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR--F-IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~--~-~p~-~D~i~ 212 (301)
.+..+|||||||+|.++..++++.|..+++++|+ +.+++.+++ .+|++++.+|+++ + .+. ||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888899999999 888877653 4789999999865 2 233 89888
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 213 F---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+ .++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 5 579999999999 77666543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-09 Score=97.99 Aligned_cols=83 Identities=11% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCC-c-chhHHH------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIP-P-ANAFLF------ 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p-~-~D~i~~------ 213 (301)
...+|||+|||+|.++..+++. +.+++++|. +.+++.+++ .-+++++.+|+.+ +.+ . ||+|++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4679999999999999999998 569999999 888888775 3358999999988 444 3 998886
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++++.|+| ||.++|+.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 789999999999 88888764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=98.71 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-c-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIP-P-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p-~-~D~i 211 (301)
....+|||||||+|.++..++++.|..+++++|+ +.+++.|++ .+|++++.+|+++ ..+ . ||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888899999999 888887763 3689999999765 233 3 8988
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
++ .++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 85 789999999999 7766654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=91.45 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C---CCeEEEeCCCCC-C--C--Cc-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----A---DNLKYIAGDMLR-F--I--PP-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~---~ri~~~~~D~~~-~--~--p~-~D~i~~ 213 (301)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.|++ . ++++++.+|+.+ . . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999999887753 58999999 889888774 1 689999999865 2 1 25 898886
Q ss_pred ----------HHHHHH--HHhcccCCCCcEEEEEee
Q 043533 214 ----------KILKKR--REAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------~iL~~~--~~aL~p~~~gg~l~i~e~ 237 (301)
.+++.+ .+.|+| ||.+++...
T Consensus 132 ~~~~~~~~~~~~l~~~~~~~~Lkp---gG~l~i~~~ 164 (201)
T 2ift_A 132 DPPFHFNLAEQAISLLCENNWLKP---NALIYVETE 164 (201)
T ss_dssp CCCSSSCHHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred CCCCCCccHHHHHHHHHhcCccCC---CcEEEEEEC
Confidence 778888 556999 787766554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.3e-10 Score=94.27 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCc-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP------GIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P------~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~~p~- 207 (301)
.....+|||||||+|.++..+++..+ ..+++++|+ +++++.+++ .++++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45567999999999999999998765 369999999 888887764 25899999999875542
Q ss_pred --chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 --ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 --~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||+|++ .+++++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTPTELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCCHHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHHHHHHHHhcC---CCEEEEEE
Confidence 999987 788999999999 78777653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-09 Score=89.74 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=67.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CCC-c-chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR--FIP-P-ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~--~~p-~-~D~i~~---- 213 (301)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+ . ||+|++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 457999999999999999888753 48999999 889888774 2589999999876 333 3 898886
Q ss_pred ------HHHHHHHHh--cccCCCCcEEEEEee
Q 043533 214 ------KILKKRREA--IASNGERGKVIIIDI 237 (301)
Q Consensus 214 ------~iL~~~~~a--L~p~~~gg~l~i~e~ 237 (301)
.+++.+.+. |+| ||.+++...
T Consensus 133 ~~~~~~~~l~~l~~~~~L~p---gG~l~i~~~ 161 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLAD---EALIYVESE 161 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred CCCcHHHHHHHHHhcCccCC---CcEEEEEEC
Confidence 678888764 999 777665543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-09 Score=85.83 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=66.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCeEEE-eCCCCC-C--------CC-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG---------IKCTVLDLPHAVANLPEADNLKYI-AGDMLR-F--------IP- 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~---------~~~~~~Dlp~~~~~a~~~~ri~~~-~~D~~~-~--------~p- 206 (301)
+....+|||||||+|.++..++++++. .+++++|+.++. ..++++++ .+|+.. + ++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 455789999999999999999999865 899999995431 13578999 899876 2 23
Q ss_pred -cchhHHH----------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 -PANAFLF----------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 -~~D~i~~----------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.||+|++ .++++++++|+| ||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 2888772 679999999999 888877654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-09 Score=94.26 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=74.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CCc-ch
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F-IPP-AN 209 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~-~p~-~D 209 (301)
..++ .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+. ||
T Consensus 112 ~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 112 VALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp HHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred HHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence 4444 56678999999999999999999875 589999999 888877764 3479999999876 3 233 78
Q ss_pred hHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 210 AFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 210 ~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+|++ ++|+++++.|+| ||++++....+
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 7663 789999999999 88887765433
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-09 Score=95.74 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=70.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
+...+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|+.+. .+. ||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998888899999999 888876653 36899999998652 233 88887
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ .++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 5 889999999999 7766655
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.2e-09 Score=95.81 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=81.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC-c-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP-P-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p-~-~D~i~~-- 213 (301)
+.+..+|||+|||+|.+++.++...+..+++++|+ +.+++.|++ .++|+++.+|+.+ +.+ . +|+|++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 35568999999999999999999988779999999 899888875 2589999999987 554 2 787765
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHH
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 276 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~l 276 (301)
.+++.+++.| + |+ ++++.. +.+.+++.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~-~~~i~~-------------------------------~~~~~~~~ 338 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL-E---KR-GVFITT-------------------------------EKKAIEEA 338 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE-E---EE-EEEEES-------------------------------CHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc-C---Ce-EEEEEC-------------------------------CHHHHHHH
Confidence 4556666666 4 23 222211 34556678
Q ss_pred HHhCCCceeEEEec
Q 043533 277 FFDAVFSHYKITPI 290 (301)
Q Consensus 277 l~~aGf~~~~~~~~ 290 (301)
+.+.||+..+...+
T Consensus 339 ~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 339 IAENGFEIIHHRVI 352 (373)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEE
Confidence 88899998887766
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-09 Score=95.99 Aligned_cols=85 Identities=8% Similarity=0.116 Sum_probs=69.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. .+. ||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 4468999999999999999999888889999999 888876653 36899999997652 233 88877
Q ss_pred H----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ .++++++++|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4 688999999999 7766654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=88.70 Aligned_cols=121 Identities=11% Similarity=0.004 Sum_probs=85.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~------ 213 (301)
..+.+|||||||.|-++..+...+|..+++++|+ +.+++.++. +.+.++...|+.. +.+. +|++++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 5578999999999999999999999999999999 888887764 5668899999988 4455 999865
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeee-eCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIV-INAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
..+ ++.++|+| +|.++-++.- +..... . ++- .=...|++.+.+.|+..
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ksl~Grs~--------g-m~~----------~Y~~~~e~~~~~~g~~~- 266 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPTKSLGQRSK--------G-MFQ----------NYSQSFESQARERSCRI- 266 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEECC---------------C-HHH----------HHHHHHHHHHHHHTCCE-
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccchhhcCCCc--------c-hhh----------HHHHHHHHHHHhcCCce-
Confidence 555 89999999 5544444431 111110 0 100 11466888899999944
Q ss_pred EEEecCC
Q 043533 286 KITPIFG 292 (301)
Q Consensus 286 ~~~~~~~ 292 (301)
+...+++
T Consensus 267 ~~~~~~n 273 (281)
T 3lcv_B 267 QRLEIGN 273 (281)
T ss_dssp EEEEETT
T ss_pred eeeeecC
Confidence 4344433
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-09 Score=95.29 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=68.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCeEEEeCCCCCCC--Cc-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP----------------EADNLKYIAGDMLRFI--PP- 207 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~----------------~~~ri~~~~~D~~~~~--p~- 207 (301)
....+|||||||+|.++..++++ |..+++++|+ |.+++.|+ ..+|++++.+|..+.+ +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 88877654 2468999999975421 33
Q ss_pred chhHHH---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 208 ANAFLF---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 208 ~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
||+|++ .++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 888775 679999999999 7766554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-09 Score=97.85 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=69.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
+...+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|+++. .+. ||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 4568999999999999999998878899999999 888876653 36899999998652 233 88887
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ .++++++++|+| ||.+++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4 789999999999 6766554
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=89.62 Aligned_cols=113 Identities=14% Similarity=0.043 Sum_probs=86.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-c-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-P-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-~-~D~i~~--- 213 (301)
+..+.+|||+|||+|.+++.++++. ..+++++|+ |.+++.+++ .++|+++.+|.++-.+ . ||.|+|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4567899999999999999999874 578999999 888887764 6889999999987323 3 998888
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
..|..+.+.|++ ||.+.+++........ ....+.++++.++.|++..
T Consensus 202 ~~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~----------------------~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 VRTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYDVE 252 (278)
T ss_dssp SSGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHcCC---CCEEEEEeeecccccc----------------------hhHHHHHHHHHHHcCCcEE
Confidence 889999999999 7877666654321110 1234567788889998764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-09 Score=97.14 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
....+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .+|++++.+|+.+. .+. ||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999888899999999 888876653 36899999998752 223 88887
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ .++++++++|+| ||.+++.
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~ 221 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ 221 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEE
Confidence 4 779999999999 7766654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-09 Score=91.45 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=73.9
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----C
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FI-----P 206 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~-----p 206 (301)
..++ .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ +. +
T Consensus 77 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 77 IVLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp HHHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTT
T ss_pred HHhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcc
Confidence 4444 566789999999999999999999876 89999999 777776654 3489999999865 32 3
Q ss_pred c-chhHHH-----------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 207 P-ANAFLF-----------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 207 ~-~D~i~~-----------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
. ||+|++ ++|+++++.|+| ||++++....+
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~ 214 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM 214 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence 3 777653 689999999999 88877766543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-09 Score=95.13 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=70.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC---CCc-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRF---IPP-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~---~p~-~D~i 211 (301)
+...+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|+.+. .+. ||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999888889999999 888876653 36899999998652 233 8877
Q ss_pred HH------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 212 LF------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 212 ~~------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++ .++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 64 579999999999 78777653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-08 Score=89.64 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE--AD------NLKYI--AGDMLR-FIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~--~~------ri~~~--~~D~~~-~~p~-~D~i~~- 213 (301)
+.+..+|||||||+|.++..++++ .+++++|+..++..+++ .. +++++ .+|+.+ + +. +|+|++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~sd 147 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMCD 147 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEEC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEEe
Confidence 455679999999999999999887 68999999446443332 11 68999 899976 4 33 787765
Q ss_pred ----------------HHHHHHHHhcccCCCCc--EEEEEee
Q 043533 214 ----------------KILKKRREAIASNGERG--KVIIIDI 237 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg--~l~i~e~ 237 (301)
.+|+.++++|+| || .+++-..
T Consensus 148 ~~~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~ 186 (265)
T 2oxt_A 148 VGESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL 186 (265)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred CcccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence 278999999999 88 7776443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.6e-09 Score=90.63 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=63.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--eCCCCC-CCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE--AD------NLKYI--AGDMLR-FIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~--~~------ri~~~--~~D~~~-~~p~-~D~i~~- 213 (301)
+.+..+|||||||+|.++..++++ .+++++|+..++..+++ .. +++++ .+|+.+ + +. ||+|++
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd 155 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCD 155 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEEC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEEC
Confidence 455679999999999999999987 58999999446443332 11 78999 999876 4 33 787765
Q ss_pred ----------------HHHHHHHHhcccCCCCc--EEEEEe
Q 043533 214 ----------------KILKKRREAIASNGERG--KVIIID 236 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg--~l~i~e 236 (301)
.+|+.++++|+| || .+++..
T Consensus 156 ~~~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~ 193 (276)
T 2wa2_A 156 IGESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV 193 (276)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred CCcCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence 368999999999 88 777743
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-08 Score=90.39 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCeEEEeC-CCCC-CCCcchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-----PHAVANLPE----ADNLKYIAG-DMLR-FIPPANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-----p~~~~~a~~----~~ri~~~~~-D~~~-~~p~~D~i~~-- 213 (301)
+.+..+|||||||+|.++..++++ .+++++|+ +..++.+.. .++|+++.+ |+.. +...+|+|++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 455679999999999999999987 47999998 544433321 267999999 9876 3323777765
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|+.++++|+| ||.+++ ....+
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~-kv~~~ 194 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV-KVLNP 194 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE-EESCC
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE-EeCCC
Confidence 368889999999 886665 44333
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-08 Score=90.51 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=59.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
+..++ +.++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 17 ~~~i~-~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 17 INSII-DKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHH-HHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHH-HhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 45566 6665 5667899999999999999999985 48999999 888876654 1589999999987 67
Q ss_pred CcchhHHH
Q 043533 206 PPANAFLF 213 (301)
Q Consensus 206 p~~D~i~~ 213 (301)
+.+|+|++
T Consensus 92 ~~fD~vv~ 99 (285)
T 1zq9_A 92 PFFDTCVA 99 (285)
T ss_dssp CCCSEEEE
T ss_pred hhhcEEEE
Confidence 77887765
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-08 Score=91.15 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=73.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC-c-chh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIP-P-ANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p-~-~D~ 210 (301)
+..++ +.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++.+|+++..+ . ||+
T Consensus 28 ~~~~~-~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 28 VDFMV-SLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHH-HHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHH-Hhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCE
Confidence 34455 5554 3345699999999999999999987 6789999999 8888776 689999999987322 3 787
Q ss_pred HHH----------------------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 211 FLF----------------------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~----------------------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|++ .+++++.+.|+| ||+++++-+
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 765 348889999999 888777654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-10 Score=96.11 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=85.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C--CCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----A--DNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~--~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ . ++++++.+|+.+ +.+. ||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999974 89999999 888888774 1 589999999987 4223 999887
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
..+.+++++|+| ||. ++++...... -+..+. -.+....+++..++...|.-.+..
T Consensus 156 ~~~~~~~~~~~~~~~L~p---gG~-~i~~~~~~~~------------~~~~~~---lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSP---DGF-EIFRLSKKIT------------NNIVYF---LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGGGSSSBCTTTSCSS---CHH-HHHHHHHHHC------------SCEEEE---EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred CcchhhhHHHHHHhhcCC---cce-eHHHHHHhhC------------CceEEE---CCCCCCHHHHHHHhccCCCEEEEe
Confidence 366678889999 786 3333211000 000000 012335677778888777766665
Q ss_pred EecCC
Q 043533 288 TPIFG 292 (301)
Q Consensus 288 ~~~~~ 292 (301)
....+
T Consensus 217 ~~~~~ 221 (241)
T 3gdh_A 217 NFLNN 221 (241)
T ss_dssp EEETT
T ss_pred hhhcC
Confidence 55544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-08 Score=84.24 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=66.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~------ 213 (301)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++. +.+.++..+|... +.|. +|++++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 557899999999999999988 8999999999 888888775 6778899999987 6666 999865
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++ ++.++|++ ++ ++|.-
T Consensus 181 LE~q~~~~~~-~ll~aL~~---~~-vvVsf 205 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT---PR-MAVSF 205 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC---SE-EEEEE
T ss_pred hhhhchhhHH-HHHHHhcC---CC-EEEEc
Confidence 444 88889999 44 54443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-08 Score=91.64 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=76.4
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CC-c-
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IP-P- 207 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p-~- 207 (301)
..++ .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ .++++++.+|+.+ + ++ .
T Consensus 253 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 253 IVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 4444 566789999999999999999999887 89999999 777766653 3579999999976 3 44 3
Q ss_pred chhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 208 ANAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 208 ~D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
||+|++ ++|+++.+.|+| ||++++.+..+.
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 888873 589999999999 898888776443
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-07 Score=84.20 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=64.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCeEEEeCCCCCC---C
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL--PHAVANLPE------------A----DNLKYIAGDMLRF---I 205 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl--p~~~~~a~~------------~----~ri~~~~~D~~~~---~ 205 (301)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++..|+.+. +
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888864 348999999 577765542 1 4788886665431 2
Q ss_pred -----Cc-chhHHH-----------HHHHHHHHhcc---cCCCCcEEEEE
Q 043533 206 -----PP-ANAFLF-----------KILKKRREAIA---SNGERGKVIII 235 (301)
Q Consensus 206 -----p~-~D~i~~-----------~iL~~~~~aL~---p~~~gg~l~i~ 235 (301)
+. ||+|++ .+++.+++.|+ | ++||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 23 898875 89999999999 7 346876663
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-08 Score=89.42 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=71.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCcchhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPPANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~------ 213 (301)
....+|||+|||+|.++.. ++ ...+++++|+ |.+++.+++ .++++++.+|+++....||+|++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKFA 270 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTTG
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHhH
Confidence 4568999999999999999 76 4779999999 888887764 36899999999874444999888
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++.+.+.|+| ||.+++.+...
T Consensus 271 ~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 271 HKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp GGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred HHHHHHHHHHcCC---CCEEEEEEeec
Confidence 899999999999 78777777643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-08 Score=89.33 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=67.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCCC------C-cchhHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------AD-NLKYIAGDMLRFI------P-PANAFL 212 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~-ri~~~~~D~~~~~------p-~~D~i~ 212 (301)
...+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+ +++++.+|+++.. . .||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998754 9999999 888887764 22 5999999987621 2 388775
Q ss_pred H---------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 213 F---------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 213 ~---------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+ .+++++.+.|+| ||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEEC
Confidence 4 789999999999 887666543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-08 Score=92.84 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=72.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CC-c-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-F--IP-P-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~--~p-~-~D~i~~-- 213 (301)
.....+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ +-+++++.+|+.+ + ++ . ||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 55678999999999999999999999899999999 776666553 3358899999976 3 33 3 888862
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++.+.|+| ||++++....+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 779999999999 88888877544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.5e-08 Score=85.15 Aligned_cols=85 Identities=12% Similarity=0.221 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCC---Cc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRFI---PP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~~---p~-~D~ 210 (301)
-+++++||-||||.|..+.++++..|..+++++|+ |.|++.+++ .+|++++.+|.++-+ +. ||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 36689999999999999999998877789999999 999887653 689999999988732 23 999
Q ss_pred HHH---------------HHHHHHHHhcccCCCCcEEEE
Q 043533 211 FLF---------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 211 i~~---------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
|++ ..++.++++|+| ||.++.
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~ 196 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVA 196 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEE
Confidence 987 899999999999 664444
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.2e-08 Score=91.81 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=72.3
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-c
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-A 208 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~ 208 (301)
..++ .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. |.++.+|+.+ + .+. |
T Consensus 95 ~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 95 VLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp HHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCE
T ss_pred HhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccC
Confidence 4444 566789999999999999999999765 79999999 888877764 23 8999999765 2 334 8
Q ss_pred hhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 209 NAFLF---------------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 209 D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|+|++ ++|+++.+.|+| ||+|+....
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTC 230 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTC 230 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEES
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEec
Confidence 87772 799999999999 887776554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=88.69 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~--- 213 (301)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ + .+. ||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 579999999 788777664 3579999999876 3 344 787753
Q ss_pred ------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++.+.|+| ||+|++....+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccC
Confidence 589999999999 88887765433
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=86.52 Aligned_cols=99 Identities=6% Similarity=-0.035 Sum_probs=74.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeE
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG--------------------------------------IKC 176 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--------------------------------------~~~ 176 (301)
+..++ .... +.+...|||.+||+|.++++.+....+ .++
T Consensus 190 Aa~ll-~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 190 AAALV-LLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHH-HHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHH-HHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 34455 5555 566789999999999999998876443 579
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH---------------HHHHHHHHhcccCCCCcE
Q 043533 177 TVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF---------------KILKKRREAIASNGERGK 231 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~---------------~iL~~~~~aL~p~~~gg~ 231 (301)
+++|+ +.+++.|+. .++|+++.+|+++ +.+. +|+|++ .+.+++.+.|++ -+|++
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~ 345 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWS 345 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCE
Confidence 99999 889888874 4579999999987 5555 898887 455555566654 23788
Q ss_pred EEEEee
Q 043533 232 VIIIDI 237 (301)
Q Consensus 232 l~i~e~ 237 (301)
++|+..
T Consensus 346 ~~iit~ 351 (393)
T 3k0b_A 346 VYVLTS 351 (393)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888754
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-07 Score=79.74 Aligned_cols=67 Identities=13% Similarity=0.318 Sum_probs=54.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p 206 (301)
...++ +.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~~i~-~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 19 IDKIM-TNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHH-TTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC
T ss_pred HHHHH-HhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcc
Confidence 44566 6555 5667899999999999999999986 68999999 888877654 3689999999987 665
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.9e-08 Score=90.80 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=72.6
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-c
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-A 208 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~ 208 (301)
..++ .....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..+|.++.+|..+ + .+. |
T Consensus 99 ~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 99 TAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp HHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCE
T ss_pred HHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccC
Confidence 4445 56678999999999999999998865 479999999 777776664 3579999999765 2 334 7
Q ss_pred hhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 209 NAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 209 D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
|+|++ ++|+++.+.|+| ||+|+.....
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs 236 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCT 236 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESC
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEee
Confidence 87753 789999999999 8887765543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=82.59 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=60.9
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc-
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~- 207 (301)
+..++ +.++ .....+|||||||+|.++..|+++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 39 ~~~Iv-~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 39 VNKAV-ESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred HHHHH-HhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 45566 6665 666789999999999999999998 468999999 888887765 4789999999988 7765
Q ss_pred -chhHHH
Q 043533 208 -ANAFLF 213 (301)
Q Consensus 208 -~D~i~~ 213 (301)
+|+|++
T Consensus 114 ~fD~Iv~ 120 (295)
T 3gru_A 114 DFNKVVA 120 (295)
T ss_dssp CCSEEEE
T ss_pred CccEEEE
Confidence 787765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-07 Score=84.52 Aligned_cols=99 Identities=11% Similarity=0.031 Sum_probs=75.3
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeE
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG--------------------------------------IKC 176 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--------------------------------------~~~ 176 (301)
+..++ .... +.+...|+|.+||+|.++++.+....+ .++
T Consensus 183 Aaall-~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 183 AAAII-LLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHH-HHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHH-HHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 34455 5555 566789999999999999998875443 579
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH---------------HHHHHHHHhcccCCCCcE
Q 043533 177 TVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF---------------KILKKRREAIASNGERGK 231 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~---------------~iL~~~~~aL~p~~~gg~ 231 (301)
+++|+ +.+++.|+. .++|+++.+|+++ +.+. +|+|++ .+.+++.+.|++ -+|++
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~ 338 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWS 338 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcE
Confidence 99999 889888874 4579999999987 5554 898887 566666666664 33788
Q ss_pred EEEEee
Q 043533 232 VIIIDI 237 (301)
Q Consensus 232 l~i~e~ 237 (301)
++|+..
T Consensus 339 ~~iit~ 344 (384)
T 3ldg_A 339 QFILTN 344 (384)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888764
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-07 Score=86.36 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=73.9
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeE
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG--------------------------------------IKC 176 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--------------------------------------~~~ 176 (301)
+..++ .... +.+..+|||++||+|.++++++....+ .++
T Consensus 184 Aa~ll-~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 184 AAGLI-YLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHH-HTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHH-HhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34455 5555 566789999999999999999876332 679
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH---------------HHHHHHHHhcccCCCCcE
Q 043533 177 TVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF---------------KILKKRREAIASNGERGK 231 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~---------------~iL~~~~~aL~p~~~gg~ 231 (301)
+++|+ +.+++.|+. .++|+|..+|+++ +.+. +|+|++ .+.+++.+.|++ -+|++
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~ 339 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWS 339 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCE
Confidence 99999 899988875 3479999999987 4554 898887 556666666654 23788
Q ss_pred EEEEee
Q 043533 232 VIIIDI 237 (301)
Q Consensus 232 l~i~e~ 237 (301)
++|+..
T Consensus 340 ~~iit~ 345 (385)
T 3ldu_A 340 YYLITS 345 (385)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887754
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-07 Score=78.24 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=53.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +|. +|+|++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~ 116 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM 116 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEE
Confidence 345689999999999999999987 5558999999 888887775 2389999999976 344 888876
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-08 Score=85.28 Aligned_cols=94 Identities=12% Similarity=0.251 Sum_probs=71.1
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC-
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIP- 206 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p- 206 (301)
....++ +.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 17 ~~~~i~-~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 17 VLNQII-KQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHH-HHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHH-HhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 345566 6665 5667899999999999999999985 78999999 888888876 3689999999987 655
Q ss_pred -c-chhH-----------HHHHH--------------HHHHHhcccCCCCcEEEEE
Q 043533 207 -P-ANAF-----------LFKIL--------------KKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 -~-~D~i-----------~~~iL--------------~~~~~aL~p~~~gg~l~i~ 235 (301)
. ++++ +..++ +.+.+.|+| ||++.++
T Consensus 92 ~~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~ 144 (245)
T 1yub_A 92 KQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL 144 (245)
T ss_dssp SSEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred CCCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence 2 5221 11333 558889998 7877654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-07 Score=83.92 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=55.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
...++ +.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 31 ~~~i~-~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 31 LDKII-YAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHH-HHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHH-HhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 45566 6665 566789999999999999999987 468999999 888877664 2689999999987 666
Q ss_pred cchhHHH
Q 043533 207 PANAFLF 213 (301)
Q Consensus 207 ~~D~i~~ 213 (301)
.+|+|++
T Consensus 106 ~~D~Vv~ 112 (299)
T 2h1r_A 106 KFDVCTA 112 (299)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 6887776
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-08 Score=88.70 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=66.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCCC------C-cchhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------AD-NLKYIAGDMLRFI------P-PANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~-ri~~~~~D~~~~~------p-~~D~i 211 (301)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ .+ +++|+.+|+++.+ . .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999863 348999999 888887764 23 8999999987621 2 38887
Q ss_pred HH--------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 212 LF--------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 212 ~~--------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++ ++++.+.+.|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 75 477888999999 77665543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-07 Score=81.24 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=61.2
Q ss_pred ccCCCeEEEecC------CccHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEE-EeCCCCC-CCCc-chhHHH---
Q 043533 147 FEGLGSLVDVGG------GNVSFSRIISEAFP-GIKCTVLDLPHAVANLPEADNLKY-IAGDMLR-FIPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGg------G~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~~~ri~~-~~~D~~~-~~p~-~D~i~~--- 213 (301)
+....+|||||| |+|. ..+++..| +.+++++|+.+.+ +++++ +.+|+.+ +++. ||+|++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 4477 55566766 6899999993332 47889 9999987 5554 888775
Q ss_pred -------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|++++++|+| ||++++..
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~ 171 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKI 171 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 589999999999 88887754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-07 Score=86.27 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CCc-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF---IPP-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~---~p~-~D~i~~----- 213 (301)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ +-...+..+|+++. .+. ||+|++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 36899999999999999999974 44999999 888887774 22235668898762 233 888874
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++.+.+.|+| ||.++++..
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~ 327 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSC 327 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 889999999999 887776654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.31 E-value=9.4e-08 Score=88.49 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=68.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC------Cc-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI------PP-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~------p~-~D~i~~ 213 (301)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++.. +. ||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999987 4458999999 888887764 238999999987621 22 787765
Q ss_pred --------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++.+.|+| ||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 688999999999 787776654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=9.5e-07 Score=82.51 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=64.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP-ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~-~D~i~~----- 213 (301)
..+..+|||+|||+|.++..+++. ..+++++|+ +++++.|++ -+ ++|+.+|+++..+. ||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 455689999999999999999987 458999999 888888774 23 99999999875454 999988
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++.+. .|+| +|.+++.
T Consensus 365 g~~~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 365 GLHPRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp CSCHHHHHHHH-HHCC---SEEEEEE
T ss_pred chHHHHHHHHH-hcCC---CcEEEEE
Confidence 4666665 5899 6655553
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-07 Score=89.41 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=68.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C--CCeEEEeCCCCC---CCC-c-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----A--DNLKYIAGDMLR---FIP-P-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~--~ri~~~~~D~~~---~~p-~-~D~i~~- 213 (301)
+..+.+|||||||.|.++..|++. +.+++++|+ +.+++.|+. . -+|+|..+|+.+ +.+ . ||+|++
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345679999999999999999998 678999999 888887763 2 369999998854 233 3 999987
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.-+.++.+.|++ +++.+++.....+
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e 178 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE 178 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence 334456777888 6777777665443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-07 Score=83.76 Aligned_cols=85 Identities=8% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-c-chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPG-----IKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP-P-ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~-----~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p-~-~D~i~~-- 213 (301)
...+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+. +.++.++.+|.+.+.+ . ||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999998765 78999999 888877764 3468999999987543 3 887765
Q ss_pred ---------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++.+.|+| ||+++++-
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~ 256 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLV 256 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEE
Confidence 368999999999 88777765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.7e-08 Score=88.03 Aligned_cols=84 Identities=10% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC------Cc-chhHHH-
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI------PP-ANAFLF- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~------p~-~D~i~~- 213 (301)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ -++++++.+|+++.. +. ||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 888887764 245999999987621 33 787776
Q ss_pred -------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 588999999999 787776653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.8e-07 Score=80.08 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=57.2
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~-- 207 (301)
+..++ +..+ .... +|||||||+|.++..|+++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 36 ~~~Iv-~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~ 109 (271)
T 3fut_A 36 LRRIV-EAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVP 109 (271)
T ss_dssp HHHHH-HHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSC
T ss_pred HHHHH-HhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhcc
Confidence 34566 6665 5666 99999999999999999985 68999999 888877654 4689999999987 6652
Q ss_pred -chhHHH
Q 043533 208 -ANAFLF 213 (301)
Q Consensus 208 -~D~i~~ 213 (301)
+|.|+.
T Consensus 110 ~~~~iv~ 116 (271)
T 3fut_A 110 QGSLLVA 116 (271)
T ss_dssp TTEEEEE
T ss_pred CccEEEe
Confidence 555544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5e-07 Score=87.86 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=79.7
Q ss_pred hhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhc--ccCCCeEEEecCCccHHHHHHH---HHC-CCCeEEEeech
Q 043533 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI--FEGLGSLVDVGGGNVSFSRIIS---EAF-PGIKCTVLDLP 182 (301)
Q Consensus 109 ~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~---~~~-P~~~~~~~Dlp 182 (301)
.||-+++|+-.-..|++|+.. .+. +..+.. -.+...|+|||||+|-+....+ ++. -++++.+++-.
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~-d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLL-DRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHH-HHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHH-HhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 578888888777778887642 133 332211 1223579999999999844433 332 23478999986
Q ss_pred HHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH-------------HHHHHHHHhcccCCCCcEE
Q 043533 183 HAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF-------------KILKKRREAIASNGERGKV 232 (301)
Q Consensus 183 ~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l 232 (301)
.++..+++ .++|+++.||+.+ .+|+ +|+|++ .+|....+.|+| ||.+
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 56666554 7899999999998 8898 999987 777777788999 6643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.27 E-value=6.4e-07 Score=74.77 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=51.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc-chhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ .-+++++.+|+.+ +|. +|+|++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~ 118 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM 118 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEE
Confidence 3567999999999999999998843 48999999 888887764 1279999999976 343 888776
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=9.2e-07 Score=82.84 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=60.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-----C--cchhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI-----P--PANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~-----p--~~D~i~ 212 (301)
..+..+|||+|||+|.++..+++. ..+++++|+ +++++.|+. -++++|+.+|+.+.+ + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456689999999999999999987 678999999 888887764 258999999998732 2 289988
Q ss_pred H--------HHHHHHHHhccc
Q 043533 213 F--------KILKKRREAIAS 225 (301)
Q Consensus 213 ~--------~iL~~~~~aL~p 225 (301)
+ .+++.+.+ ++|
T Consensus 362 ~dPPr~g~~~~~~~l~~-~~p 381 (433)
T 1uwv_A 362 LDPARAGAAGVMQQIIK-LEP 381 (433)
T ss_dssp ECCCTTCCHHHHHHHHH-HCC
T ss_pred ECCCCccHHHHHHHHHh-cCC
Confidence 7 55555543 577
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=78.27 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=55.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR 203 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~ 203 (301)
...++ +.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.|++ ++|++++.+|+.+
T Consensus 15 l~e~l-~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 15 VREVI-EFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp HHHHH-HHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHH-HhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 45566 6665 56678999999999999999999999899999999 889887764 3799999999853
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.9e-07 Score=90.32 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=67.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMLRF---IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~D~~~~---~p~-~D~i~~ 213 (301)
.....+|||+|||+|.++..+++... .+++++|+ +.+++.+++ . ++++++.+|+++. ... ||+|++
T Consensus 537 ~~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 537 MSKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp HCTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred hcCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 34568999999999999999998543 47999999 888887764 2 5899999998862 223 888875
Q ss_pred ----------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ----------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ----------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++++.+.|+| ||.+++.
T Consensus 616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s 656 (703)
T 3v97_A 616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFS 656 (703)
T ss_dssp CCCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 679999999999 7766643
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-07 Score=85.76 Aligned_cols=85 Identities=7% Similarity=0.056 Sum_probs=67.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CeEEEeCCCCCCC------C-cchhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------A-D-NLKYIAGDMLRFI------P-PANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~-~-ri~~~~~D~~~~~------p-~~D~i 211 (301)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ - + +++++.+|+++.. + .||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999875 458999999 888887764 2 3 7999999987621 2 38887
Q ss_pred HH--------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 212 LF--------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 212 ~~--------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++ .++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 76 678889999999 77666544
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.2e-07 Score=80.19 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=56.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~p~ 207 (301)
...++ +.++ .....+|||||||+|.++..|+++.+. .+++++|+ +.+++.+++ .++++++.+|+.+ ++++
T Consensus 31 ~~~iv-~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 31 IDAIV-AAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHH-HHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHH-HhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 34466 6665 666789999999999999999998654 56999999 888888765 4789999999987 6654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=75.90 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=56.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~p~ 207 (301)
...++ +.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++++
T Consensus 20 ~~~iv-~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 20 LKKIA-EELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHH-HHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred HHHHH-HhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 44566 6665 566789999999999999999987 4579999999 888887765 4689999999987 6654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.20 E-value=8.5e-07 Score=77.16 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=55.2
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p 206 (301)
+..++ +.++ .....+|||||||+|.++..|+++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv-~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIV-SAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHH-HHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHH-HhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 44566 6665 6667899999999999999999885 68999999 888887764 4799999999987 553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-06 Score=82.83 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=72.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC-----C---CC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-------------PGIKCTVLDL-PHAVANLPE-----A---DN 193 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------P~~~~~~~Dl-p~~~~~a~~-----~---~r 193 (301)
..++ +.+. .....+|+|.|||+|.++..+++.. +..+++++|+ |.++..|+. + .+
T Consensus 161 ~~mv-~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 161 QAMV-DCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHH-HHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHH-HHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 4445 5444 3456799999999999999988763 4578999999 887776653 1 26
Q ss_pred eEEEeCCCCC-CCCc-chhHHH----------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 194 LKYIAGDMLR-FIPP-ANAFLF----------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 194 i~~~~~D~~~-~~p~-~D~i~~----------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+.+..+|.+. +... ||+|++ ..++++.+.|+| ||++.++-+
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 7889999987 4433 888776 358999999999 898887764
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=9.1e-07 Score=81.35 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=68.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCeEEEeCCCCCC--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----A-----------------DNLKYIAGDMLRF-- 204 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~-----------------~ri~~~~~D~~~~-- 204 (301)
...+|||+|||+|..++.++++.+..+++++|+ +++++.+++ . ++++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999988889999999 777766653 1 2389999998652
Q ss_pred -CCc-chhHHH-------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 205 -IPP-ANAFLF-------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 205 -~p~-~D~i~~-------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+. ||+|++ .+|..+.+.++| ||.+++.-
T Consensus 127 ~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPFGSPMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCSSCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHHHhcCC---CCEEEEEe
Confidence 333 898887 899999999999 78665543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.5e-07 Score=81.31 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=64.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CC-------------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---IP------------- 206 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~p------------- 206 (301)
..+|||+|||+|.++..+++.. .+++++|. +++++.|++ -++++|+.+|+.+- ++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998753 48999999 888887764 25899999998651 11
Q ss_pred ---cchhHHH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 ---PANAFLF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.||+|++ .+..++.+.|++ +|+++++..
T Consensus 292 ~~~~fD~Vv~dPPr~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPRSGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCTTCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECcCccccHHHHHHHHhC---CCEEEEEEC
Confidence 4788887 356667777777 788877653
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-06 Score=73.56 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=77.7
Q ss_pred CCCeEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEA-------FPG-----IKCTVLDL-P---HAVANL-----------P------------ 189 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~-------~P~-----~~~~~~Dl-p---~~~~~a-----------~------------ 189 (301)
+..+|||||+|+|..+..+++. +|+ ++++.+|. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3469999999999999887765 784 68999997 4 222211 1
Q ss_pred ------C--CCCeEEEeCCCCC--C-CC-----cchhHHH--------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 190 ------E--ADNLKYIAGDMLR--F-IP-----PANAFLF--------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 190 ------~--~~ri~~~~~D~~~--~-~p-----~~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
. ..+++++.||+.+ + ++ .+|+|++ .+|+.+++.|+| ||.++.+..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tysa-- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFTS-- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESCC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEeC--
Confidence 1 2457788999765 2 32 3788886 699999999999 776653110
Q ss_pred CCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEE
Q 043533 240 NAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEV 299 (301)
Q Consensus 240 ~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a 299 (301)
...+++.|.++||++.++...+.-..++.+
T Consensus 215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 012467788889987766544444444444
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-06 Score=73.02 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=52.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~ 207 (301)
+..++ +.++ .....+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ ++++
T Consensus 10 ~~~iv-~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 10 IDSIV-SAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHH-HHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHH
T ss_pred HHHHH-HhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHH
Confidence 45566 6665 5667899999999999999 64 555445999999 888887765 2589999999987 5543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=5.5e-06 Score=82.12 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=70.4
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH------------------------------------------CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA------------------------------------------FP 172 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~P 172 (301)
+..++ .... +.+...|||.+||+|.++++.+.. .|
T Consensus 179 Aa~ll-~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 179 AAAIV-MRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHH-HHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 34455 5555 566789999999999999998864 23
Q ss_pred CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----cchhHHH---------------HHHH---HHHH
Q 043533 173 GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP----PANAFLF---------------KILK---KRRE 221 (301)
Q Consensus 173 ~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~---------------~iL~---~~~~ 221 (301)
+.+++++|+ |.+++.|+. .++|+|..+|+.+ ..| .+|+|++ .+.+ ++.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 468999999 999988875 4569999999976 223 3788887 2333 3444
Q ss_pred hcccCCCCcEEEEEee
Q 043533 222 AIASNGERGKVIIIDI 237 (301)
Q Consensus 222 aL~p~~~gg~l~i~e~ 237 (301)
.+.| ||+++|+..
T Consensus 336 ~~~~---g~~~~ilt~ 348 (703)
T 3v97_A 336 NQFG---GWNLSLFSA 348 (703)
T ss_dssp HHCT---TCEEEEEES
T ss_pred hhCC---CCeEEEEeC
Confidence 4457 899988753
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=82.79 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=75.0
Q ss_pred hhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH----C---------CCCe
Q 043533 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA----F---------PGIK 175 (301)
Q Consensus 109 ~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------P~~~ 175 (301)
.||-+.+|+-.-..|.+|+... +. +.++ .-.+...|+|||||+|.++...+++ . ...+
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~-d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LK-DLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HH-HHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HH-Hhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 4777777777777777776431 22 2221 0123468999999999997543222 2 2458
Q ss_pred EEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC------Cc-chhHHH-------------HHHHHHHHhcccCC
Q 043533 176 CTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FI------PP-ANAFLF-------------KILKKRREAIASNG 227 (301)
Q Consensus 176 ~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~------p~-~D~i~~-------------~iL~~~~~aL~p~~ 227 (301)
++++|. |.++...+. .++|+++.+|+.+ .. |+ +|+|++ .+|..+.+.|+|
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-- 526 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-- 526 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT--
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC--
Confidence 999998 443322221 6889999999988 56 55 999886 677778888999
Q ss_pred CCcEE
Q 043533 228 ERGKV 232 (301)
Q Consensus 228 ~gg~l 232 (301)
||.+
T Consensus 527 -~Gi~ 530 (745)
T 3ua3_A 527 -TTIS 530 (745)
T ss_dssp -TCEE
T ss_pred -CcEE
Confidence 7743
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-06 Score=78.50 Aligned_cols=86 Identities=7% Similarity=-0.084 Sum_probs=68.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCC--C--CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------ADN-LKYIAGDMLR--F--IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-------~~r-i~~~~~D~~~--~--~p~-~D~i~ 212 (301)
.+..+|||++||+|.+++.++++.++ .+++.+|+ +..++.+++ .++ ++++.+|.++ . .+. ||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 34679999999999999999998765 57999999 888877764 345 9999999865 2 233 99998
Q ss_pred H-------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 213 F-------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 213 ~-------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+ .++..+.+.|+| ||.|++.-
T Consensus 131 lDP~g~~~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDPFGTPVPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECCSSCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCcCHHHHHHHHHHHhCC---CCEEEEEe
Confidence 8 799999999999 77555443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=71.28 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=54.4
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CC-----C
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FI-----P 206 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~-----p 206 (301)
..++ .....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ .++|+++.+|+.+ +. .
T Consensus 96 ~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 96 MLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp HHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred HHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccC
Confidence 4444 5667899999999999999999874 5689999999 777776654 3579999999865 21 1
Q ss_pred cchhHHH
Q 043533 207 PANAFLF 213 (301)
Q Consensus 207 ~~D~i~~ 213 (301)
.||.|++
T Consensus 174 ~fD~Vl~ 180 (309)
T 2b9e_A 174 EVHYILL 180 (309)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 2677664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.6e-05 Score=68.25 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCeEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechH
Q 043533 150 LGSLVDVGGGNVSFSRII--------SEAF-------PGIKCTVLDLPH 183 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l--------~~~~-------P~~~~~~~Dlp~ 183 (301)
.-+|+|+|||+|..+..+ .+++ |++++..-|+|.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ 101 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS 101 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence 468999999999988876 3343 889999999953
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.8e-06 Score=73.97 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=45.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCeEEEeCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-P-------HAVANLPE-------ADNLKYIAGDMLR 203 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p-------~~~~~a~~-------~~ri~~~~~D~~~ 203 (301)
.....+|||+|||+|..+..+++. ..+++++|+ | ++++.++. .+||+++.+|+.+
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~ 150 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE 150 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH
Confidence 455689999999999999999986 568999999 7 77777653 3579999999864
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=67.29 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=28.3
Q ss_pred CCeEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech
Q 043533 150 LGSLVDVGGGNVSFSRIISEA-----------------FPGIKCTVLDLP 182 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~-----------------~P~~~~~~~Dlp 182 (301)
.-+|+|+||++|..+..+... .|+++++.-|+|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 568999999999999887776 578899999997
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.2e-05 Score=67.34 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=55.5
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR 203 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~ 203 (301)
..+++ +.+. ......+||..+|.|..+..|+++ .|+.+++++|. |++++.++. .+|++++.++|.+
T Consensus 46 l~Evl-~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAV-NGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHH-HHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHH-HhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 46677 7776 666789999999999999999988 58899999999 888887643 5789999998754
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=72.85 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEeCCCCCCC-------C
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------------ADNLKYIAGDMLRFI-------P 206 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------------~~ri~~~~~D~~~~~-------p 206 (301)
++++||-||||.|..+.++++. |.-+++++|+ |.|++.+++ .+|++++.+|.++-+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3689999999999999999975 5578999999 888886653 356888888875311 1
Q ss_pred cchhHHH---------------------HHHHHHHHhcccCCCCcEEE
Q 043533 207 PANAFLF---------------------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 207 ~~D~i~~---------------------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.||+|++ .+++.++++|+| ||.++
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv 328 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYF 328 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEE
Confidence 2666653 778999999999 66443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.65 E-value=5.5e-05 Score=59.45 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=47.7
Q ss_pred hhhhhcccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC----cchhHHH
Q 043533 141 SECKQIFEGLGSLVDVGGGNV-SFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIP----PANAFLF 213 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G-~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p----~~D~i~~ 213 (301)
+.+..+.....+|||||||.| ..+..|++. -+..++++|+ |..++ ++..|+|+|.. .||+|..
T Consensus 27 eYI~~~~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYs 95 (153)
T 2k4m_A 27 VYIIRCSGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYS 95 (153)
T ss_dssp HHHHHHSCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEE
T ss_pred HHHHhcCCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEE
Confidence 444433455679999999999 588888874 3688999998 66554 88899999755 4898855
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=5.7e-05 Score=65.66 Aligned_cols=89 Identities=11% Similarity=0.121 Sum_probs=56.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh-cCCC----CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVA-NLPE----ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~-~a~~----~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
+....+|||||||+|.++..++++.+-.++.++|+..-+. .... ..++.+...++.. .++. +|+|++
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 5666799999999999999988876655666666631111 1111 1133334444321 3332 676665
Q ss_pred ------------HHHHHHHHhcccCCCC-cEEEEEeeee
Q 043533 214 ------------KILKKRREAIASNGER-GKVIIIDIVI 239 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~g-g~l~i~e~~~ 239 (301)
.+|+.+.+.|+| | |.+++ ..+-
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence 578899999999 8 76666 5544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=66.15 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=87.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCeEEEeCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE---------------------------ADNLKYIAGD 200 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~---------------------------~~ri~~~~~D 200 (301)
.+...||.+|||.......|...+|+++++=+|+|++++.-++ .++..++++|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3567999999999999999999989999999999998764321 2789999999
Q ss_pred CCC-CC----------Cc-chhH-----HH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhh
Q 043533 201 MLR-FI----------PP-ANAF-----LF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLF 255 (301)
Q Consensus 201 ~~~-~~----------p~-~D~i-----~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~ 255 (301)
+.+ +. +. ..++ ++ ++|+.+.+.. | +|.++++|.+.+.....+ +.. ....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~~-fg~-~m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPNDR-FGA-IMQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTCC-HHH-HHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcch-HHH-HHHH
Confidence 986 22 11 1222 22 8888888876 5 688889999877322211 111 0000
Q ss_pred chhh---ccccC-CccCCHHHHHHHHHhCCCc
Q 043533 256 DIVM---SVNAT-GKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 256 d~~~---~~~~~-g~~rt~~e~~~ll~~aGf~ 283 (301)
.+.- ....+ ....+.++..+.|.++||+
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0100 00111 1346889999999999997
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=5.7e-05 Score=68.60 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=59.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH-------HHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF-------KIL 216 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~-------~iL 216 (301)
+..+.++||+|+++|.++..++++ +.+++++|..++-......++|+++.+|.+. ..+. +|+|++ +++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~p~~~~ 286 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVA 286 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSCHHHHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCChHHhH
Confidence 456789999999999999999988 5799999985444444446899999999998 3332 898887 566
Q ss_pred HHHHHhccc
Q 043533 217 KKRREAIAS 225 (301)
Q Consensus 217 ~~~~~aL~p 225 (301)
.-+.+.+..
T Consensus 287 ~l~~~wl~~ 295 (375)
T 4auk_A 287 ALMAQWLVN 295 (375)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 666666655
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.60 E-value=1.1e-05 Score=70.18 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHhhhhhcccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------HhcCCC-----C---CCeEEE
Q 043533 136 SFVVKSECKQIFEGL--GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHA-------VANLPE-----A---DNLKYI 197 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~-------~~~a~~-----~---~ri~~~ 197 (301)
+.+. +.+. ..+. .+|||+|||+|..+..++++ +.+++++|. |.+ ++.++. . +|++++
T Consensus 76 e~l~-~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 76 EAVA-KAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (258)
T ss_dssp SHHH-HHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred HHHH-HHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence 4455 5555 5555 79999999999999999998 568999999 644 332221 1 579999
Q ss_pred eCCCCC---CCCc-chhHHH
Q 043533 198 AGDMLR---FIPP-ANAFLF 213 (301)
Q Consensus 198 ~~D~~~---~~p~-~D~i~~ 213 (301)
.+|..+ .++. ||+|++
T Consensus 151 ~~D~~~~L~~~~~~fDvV~l 170 (258)
T 2oyr_A 151 HASSLTALTDITPRPQVVYL 170 (258)
T ss_dssp ESCHHHHSTTCSSCCSEEEE
T ss_pred ECCHHHHHHhCcccCCEEEE
Confidence 999865 2343 888777
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.3e-05 Score=75.30 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=69.9
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP------------------GIKCTVLDL-PHAVANLPE------ 190 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P------------------~~~~~~~Dl-p~~~~~a~~------ 190 (301)
..++ +.++ .....+|+|.|||+|.++..+.+... ..++.++|+ +.++..|+.
T Consensus 159 ~~mv-~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 159 KTII-HLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHH-HHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHH-HHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC
Confidence 4445 5444 34567999999999999998886521 247999999 777776652
Q ss_pred CC-----CeEEEeCCCCC-C-C--CcchhHHH-------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 191 AD-----NLKYIAGDMLR-F-I--PPANAFLF-------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 191 ~~-----ri~~~~~D~~~-~-~--p~~D~i~~-------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+ ++.+..+|.+. + . +.||+|++ ..++++.+.|+| ||++.++-
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~ 312 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV 312 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEe
Confidence 12 27888999886 3 2 23888776 378999999999 89888775
Q ss_pred e
Q 043533 237 I 237 (301)
Q Consensus 237 ~ 237 (301)
+
T Consensus 313 p 313 (541)
T 2ar0_A 313 P 313 (541)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00041 Score=62.99 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=78.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-----HHhcCCC---CCCeE---EEeCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA----------------FPGIKCTVLDLPH-----AVANLPE---ADNLK---YIAGD 200 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~----------------~P~~~~~~~Dlp~-----~~~~a~~---~~ri~---~~~~D 200 (301)
++.-+|+|+||++|..+..+... .|++++..-|+|. +-..... ..+-. -++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34468999999999766543332 5778899999953 3322221 11323 34456
Q ss_pred CCC-CCCc--chhHHH--------------------------------------------HHHHHHHHhcccCCCCcEEE
Q 043533 201 MLR-FIPP--ANAFLF--------------------------------------------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 201 ~~~-~~p~--~D~i~~--------------------------------------------~iL~~~~~aL~p~~~gg~l~ 233 (301)
|.. .+|. +|++++ .+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 655 4554 555543 459999999999 88887
Q ss_pred EEeeeeCCCcc-c----hhhhh-hhhhhchhhcc----------ccCCccCCHHHHHHHHHhCCC-ceeEEE
Q 043533 234 IIDIVINAEEE-E----HELTE-TKFLFDIVMSV----------NATGKERTESEWAKLFFDAVF-SHYKIT 288 (301)
Q Consensus 234 i~e~~~~~~~~-~----~~~~~-~~~~~d~~~~~----------~~~g~~rt~~e~~~ll~~aGf-~~~~~~ 288 (301)
+.-...++... . .-+.. ...+.|+..-- ..--..++.+|+++++++.|. ++....
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 76654443211 0 00100 01122221100 011235789999999999965 666543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.41 E-value=8.4e-05 Score=64.69 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=56.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhcCCC----CCC-eEEEeC-CCCCCCC-c-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLP-HAVANLPE----ADN-LKYIAG-DMLRFIP-P-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp-~~~~~a~~----~~r-i~~~~~-D~~~~~p-~-~D~i~~---- 213 (301)
+....+|||||||+|.++...+++.+-..++++|+. .....+.. ..+ +.+... |+. .++ . +|+|++
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEVIPGDTLLCDIGE 166 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCCCCCSEEEECCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCCCCcCEEEecCcc
Confidence 566779999999999999999988777778888882 22111111 222 223322 332 222 2 666665
Q ss_pred -------------HHHHHHHHhcccCCCC--cEEEEEeeee
Q 043533 214 -------------KILKKRREAIASNGER--GKVIIIDIVI 239 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~g--g~l~i~e~~~ 239 (301)
.+|.-+.+.|+| | |.+++ -.+-
T Consensus 167 nsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~-KvF~ 203 (282)
T 3gcz_A 167 SSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI-KVLC 203 (282)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE-EESC
T ss_pred CCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE-EEec
Confidence 678888899999 6 76555 4433
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00033 Score=58.40 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC------------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLRF------------ 204 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~~------------ 204 (301)
..+.++||++|+| .-++.+++ .++.+++.+|. ++..+.+++ .++|+++.||..+-
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 5667899999984 55555555 46889999998 666665543 45899999995431
Q ss_pred ------------CC--c-chhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccc
Q 043533 205 ------------IP--P-ANAFLF------KILKKRREAIASNGERGKVIIIDIVINAEEEE 245 (301)
Q Consensus 205 ------------~p--~-~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~ 245 (301)
.+ . ||+|++ ..+..+.+.|+| || ++|+|.+.......
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~---GG-~Iv~DNv~~r~~y~ 162 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITR---PV-TLLFDDYSQRRWQH 162 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSS---CE-EEEETTGGGCSSGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCC---Ce-EEEEeCCcCCcchH
Confidence 22 3 899998 566667788999 55 55777655444433
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00032 Score=61.28 Aligned_cols=63 Identities=25% Similarity=0.229 Sum_probs=52.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDML 202 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~ 202 (301)
.+.++ +.+. ......+||.+||.|..+..|+++ +.+++++|. |.+++.+++ .+|++++.+||.
T Consensus 11 l~e~l-e~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~ 76 (285)
T 1wg8_A 11 YQEAL-DLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFR 76 (285)
T ss_dssp HHHHH-HHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGG
T ss_pred HHHHH-HhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcc
Confidence 46677 7776 667789999999999999999998 789999999 888765542 369999999985
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00025 Score=70.35 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC---CCeEEEeec-hHHHhcC--CC----------CCCeEEEeCCCCCC--CC--cc
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFP---GIKCTVLDL-PHAVANL--PE----------ADNLKYIAGDMLRF--IP--PA 208 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P---~~~~~~~Dl-p~~~~~a--~~----------~~ri~~~~~D~~~~--~p--~~ 208 (301)
...+|+|.|||+|.++..++++.+ ..++.++|+ +.+++.| +. .+...+...|++.+ .+ .|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999999999876 357999999 7666655 10 12234555566542 11 26
Q ss_pred hhHHH----------------------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 209 NAFLF----------------------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 209 D~i~~----------------------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|+|++ .+++++.+.|+| ||++.++-+
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 66655 256778889999 898877654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.7e-05 Score=64.81 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=54.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH--CCC--CeEEEeechHHHhcCCCCCCe---EEEeC-CCCCCCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA--FPG--IKCTVLDLPHAVANLPEADNL---KYIAG-DMLRFIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~--~P~--~~~~~~Dlp~~~~~a~~~~ri---~~~~~-D~~~~~p~-~D~i~~---- 213 (301)
+....+|||+||+.|.++.-.+++ -.. -.++++|+ +..+......++ .|..+ |+++.-+. +|+|++
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvVLSDMAP 149 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGE 149 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCCCEEEeCCCC
Confidence 667789999999999999999886 211 12344443 111111112454 55557 99873343 888887
Q ss_pred -------------HHHHHHHHhcccCCCCc-EEEE
Q 043533 214 -------------KILKKRREAIASNGERG-KVII 234 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg-~l~i 234 (301)
.+|.-+.+.|+| || .+++
T Consensus 150 nSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 150 SSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 456667789999 77 5555
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=68.90 Aligned_cols=86 Identities=15% Similarity=0.008 Sum_probs=66.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-CCC----c-chh
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAF---PGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR-FIP----P-ANA 210 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~---P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~-~~p----~-~D~ 210 (301)
...+|+|.+||+|.++..+++.. +..++.++|+ +.+...|+. .+++.+..+|.+. ++| . ||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999999884 4678999999 777766653 2567899999886 322 2 787
Q ss_pred HHH----------------------------------HHHHHHHHhcc-cCCCCcEEEEEee
Q 043533 211 FLF----------------------------------KILKKRREAIA-SNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~----------------------------------~iL~~~~~aL~-p~~~gg~l~i~e~ 237 (301)
|++ ..++++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence 775 26888999999 8 898876643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.08 E-value=8.8e-05 Score=71.27 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=64.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------C
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP---------------GIKCTVLDL-PHAVANLPE-------A 191 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P---------------~~~~~~~Dl-p~~~~~a~~-------~ 191 (301)
+..++ +.+. . ...+|+|.+||+|.++..+++..+ ..++.++|+ +.++..|+. .
T Consensus 234 v~lmv-~ll~--p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 309 (544)
T 3khk_A 234 VTLIV-EMLE--P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID 309 (544)
T ss_dssp HHHHH-HHHC--C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHH-HHHh--c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 34444 4444 2 234999999999999988765432 468999999 777766652 2
Q ss_pred CCeEEEeCCCCC-C-CCc--chhHHH----------------------------------------HHHHHHHHhcccCC
Q 043533 192 DNLKYIAGDMLR-F-IPP--ANAFLF----------------------------------------KILKKRREAIASNG 227 (301)
Q Consensus 192 ~ri~~~~~D~~~-~-~p~--~D~i~~----------------------------------------~iL~~~~~aL~p~~ 227 (301)
.++.+..+|.+. + .+. ||+|++ ..++++.+.|+|
T Consensus 310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~-- 387 (544)
T 3khk_A 310 FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP-- 387 (544)
T ss_dssp CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE--
T ss_pred cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc--
Confidence 334446777765 3 222 676665 257888899999
Q ss_pred CCcEEEEEe
Q 043533 228 ERGKVIIID 236 (301)
Q Consensus 228 ~gg~l~i~e 236 (301)
||++.++-
T Consensus 388 -gGr~aiVl 395 (544)
T 3khk_A 388 -TGSMALLL 395 (544)
T ss_dssp -EEEEEEEE
T ss_pred -CceEEEEe
Confidence 88877664
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00069 Score=57.39 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=65.8
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhc---CCC---CCCeEEEeC-CCCCCCCc-c
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVAN---LPE---ADNLKYIAG-DMLRFIPP-A 208 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~---a~~---~~ri~~~~~-D~~~~~p~-~ 208 (301)
++. +.+. +....+||||||++|.++.-.+....-.++.++|+-..-.. ..+ -+.|+|..+ |++.--|. +
T Consensus 69 ei~-ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 69 WFV-ERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHH-HTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHH-HhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 344 4443 56667999999999999998887766568999999322211 111 477999999 97652223 8
Q ss_pred hhHHH-----------------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 209 NAFLF-----------------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 209 D~i~~-----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
|.+++ ++|.-+.+.|++ |.++| -.+-|.
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~-KVl~py 190 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI-KVLNPY 190 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE-EESCCC
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE-EEccCC
Confidence 88887 566666788887 45555 444343
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=65.08 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=51.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCeEEEeCCCCCC---CC--cchhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----A----DNLKYIAGDMLRF---IP--PANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~----~ri~~~~~D~~~~---~p--~~D~i~~ 213 (301)
....+|||+|||+|..+..+++. ..+++++|+ +.+++.|+. . ++++++.+|+++. .+ .||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 33689999999999999999887 469999999 888887764 1 5799999999863 22 3888887
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00063 Score=59.60 Aligned_cols=85 Identities=12% Similarity=0.152 Sum_probs=52.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhcCC--C--C-CCeEEEeC-CCCCCCCc-chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH-AVANLP--E--A-DNLKYIAG-DMLRFIPP-ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~-~~~~a~--~--~-~ri~~~~~-D~~~~~p~-~D~i~~----- 213 (301)
+.+..+||||||++|.++..++++.+-..++++|+.. ...... . . +-+.+..+ |++.-.+. +|+|++
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 5667899999999999999999877666788888831 111100 0 1 11223222 33221111 444443
Q ss_pred ------------HHHHHHHHhcccCCCC-cEEEE
Q 043533 214 ------------KILKKRREAIASNGER-GKVII 234 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~g-g~l~i 234 (301)
.+|.-+.+.|+| | |.+++
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 678888999999 8 76665
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=53.10 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=89.2
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCeEEEe
Q 043533 149 GLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDLPHAVANLP-----------------------------EADNLKYIA 198 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dlp~~~~~a~-----------------------------~~~ri~~~~ 198 (301)
+...||-+|||.=....+|... .++++++=+|+|++++.=+ ..++..+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999999876 3688899999999876211 147889999
Q ss_pred CCCCCC--C-------------Cc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh
Q 043533 199 GDMLRF--I-------------PP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK 252 (301)
Q Consensus 199 ~D~~~~--~-------------p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~ 252 (301)
.|+.+. + |. +..+++ ++|+.+.+..++ |.++++|.+.+.+..+..+....
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~fg~~M~~~l 245 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDRFGQIMIENL 245 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCHHHHHHHHHH
Confidence 998751 1 11 122222 888888887665 78888999866543221110000
Q ss_pred hhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 253 FLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 253 ~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
......+... ....+.++..++|.++||+.+++..+
T Consensus 246 ~~~g~pl~sl--~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 246 RRRQCDLAGV--ETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HTTTCCCTTG--GGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHhCCCCccc--ccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0011111100 12357888999999999999887665
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0015 Score=57.39 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=62.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhcCCC-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAF-----PGIKCTVLDL----PH-----------------------AVANLPE----- 190 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~-----P~~~~~~~Dl----p~-----------------------~~~~a~~----- 190 (301)
..++.||++|+..|..++.+++.. |+.+++++|. |+ .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999988887653 5788999994 11 0111211
Q ss_pred ---CCCeEEEeCCCCCC---CC-c-chhHHH---------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 191 ---ADNLKYIAGDMLRF---IP-P-ANAFLF---------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 191 ---~~ri~~~~~D~~~~---~p-~-~D~i~~---------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
.++|+++.||+.+. .+ . +|++++ ..|..++..|+| |.++|+|..
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~p----GGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSV----GGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEE----EEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCC----CEEEEEcCC
Confidence 38999999998762 33 2 677666 789999999999 557777764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0018 Score=56.61 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=60.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHH--H-hcCCC---CCCeEEEeC-CCCC-CCCcchhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHA--V-ANLPE---ADNLKYIAG-DMLR-FIPPANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~--~-~~a~~---~~ri~~~~~-D~~~-~~p~~D~i~~----- 213 (301)
+.....||||||++|.++.-.+....-.++.++|+-.. . +...+ -+-|.|+.+ |++. +...+|++++
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDigeS 171 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIGES 171 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCEEEEECccC
Confidence 55667999999999999997777765557999999322 1 11111 234788888 8765 2222777776
Q ss_pred ------------HHHHHHHHhcccCCCC-cEEEEEeeeeC
Q 043533 214 ------------KILKKRREAIASNGER-GKVIIIDIVIN 240 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~g-g~l~i~e~~~~ 240 (301)
++|.-+-+.|++ | |.++| -.+-|
T Consensus 172 s~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~-KVl~p 207 (321)
T 3lkz_A 172 SSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV-KVLCP 207 (321)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE-EESCT
T ss_pred CCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE-EEcCC
Confidence 677777788988 5 55555 44333
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=59.24 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEeCCCCC-C--CCc-ch
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------EADNLKYIAGDMLR-F--IPP-AN 209 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------~~~ri~~~~~D~~~-~--~p~-~D 209 (301)
...+.+|||+.+|.|.=+..|+...++.+++.+|. +.-+...+ ...++.+...|... + .+. ||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999999887778999998 44333221 13578888888754 1 233 66
Q ss_pred hHHH-----------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 210 AFLF-----------------------------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 210 ~i~~-----------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.|++ +||+++.+.|+| ||+|+.....+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCc
Confidence 6654 899999999999 776665554333
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0085 Score=53.27 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=81.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDLPHAVANLPE---------ADNLKYIAGDMLRFI------------ 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~---------~~ri~~~~~D~~~~~------------ 205 (301)
.+...||+||||.=..+..+. .| +++++-+|.|++++..++ .++..++.+|+.+.+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 456789999999999877776 35 588999999998875542 567899999987521
Q ss_pred -Cc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhh-c-hhhcc-----c-cCC
Q 043533 206 -PP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLF-D-IVMSV-----N-ATG 265 (301)
Q Consensus 206 -p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~-d-~~~~~-----~-~~g 265 (301)
|. .-.+++ .+|+.+.+.+.| |..+++|.+.++..... ....... . +.-.. . .+-
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~l~~~ 252 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEWR--EQMQLRFRRVSDALGFEQAVDVQEL 252 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHHH--HHHHHHHHHHHC-----------CC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcchh--HHHHHHHHHHHHHcCCcCCCCcccc
Confidence 11 111221 899999998888 45677787665432110 0000000 0 00000 0 011
Q ss_pred cc-CC-HHHHHHHHHhCCCcee
Q 043533 266 KE-RT-ESEWAKLFFDAVFSHY 285 (301)
Q Consensus 266 ~~-rt-~~e~~~ll~~aGf~~~ 285 (301)
.. ++ .++..++|.+.||+.+
T Consensus 253 ~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 253 IYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCTTCCCHHHHHTTTTEEEE
T ss_pred ccCCCChHHHHHHHHHCcCccc
Confidence 12 25 7889999999999988
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0058 Score=55.27 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=48.3
Q ss_pred hHHHHHhhhhhccc------CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 043533 135 TSFVVKSECKQIFE------GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP---EADNLKYIAGDMLR 203 (301)
Q Consensus 135 ~~~~~~~~~~~~~~------~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~---~~~ri~~~~~D~~~ 203 (301)
++.++ +..+ .. +...|||||.|.|.++..|+++...-+++++++ +..++..+ ..+|++++.+|+++
T Consensus 41 ~~~Iv-~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 41 YNKIF-DKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHH-HHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHH-Hhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 45566 5554 33 247899999999999999998754457999988 44444332 25799999999964
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0035 Score=54.78 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=55.0
Q ss_pred ccCCCeEEEecC------CccHHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGG------GNVSFSRIISEAFPG-IKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGg------G~G~~~~~l~~~~P~-~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~-~D~i~~---- 213 (301)
.+...+|||+|+ -.|. ..+.+..|+ ..++.+|+.++...+. .++.||+.+ .... +|+|++
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 456789999995 6777 355566886 6999999966553322 447788654 2222 677665
Q ss_pred ------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|.=+.+.|+| ||.+++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 667778899999 7877664
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0093 Score=52.73 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=65.2
Q ss_pred CCeEEEecCCccHHHHHH----HHHCCCCe--EEEeechHH--H---------------hcCCC--CCCe--EEEeCCCC
Q 043533 150 LGSLVDVGGGNVSFSRII----SEAFPGIK--CTVLDLPHA--V---------------ANLPE--ADNL--KYIAGDML 202 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l----~~~~P~~~--~~~~Dlp~~--~---------------~~a~~--~~ri--~~~~~D~~ 202 (301)
.-+|+|+|=|+|...... .+..|+.+ ++.+|...+ . ..... ..+| ++.-||+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 357999999999865433 34578765 455553100 0 00000 2343 45567765
Q ss_pred CC---CCc--chhHHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcccc
Q 043533 203 RF---IPP--ANAFLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA 263 (301)
Q Consensus 203 ~~---~p~--~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 263 (301)
+. ++. +|++++ .+|+++++.++| ||++.-.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTY---------------------------- 225 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSY---------------------------- 225 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEES----------------------------
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEE----------------------------
Confidence 42 222 566665 777777777777 5543211
Q ss_pred CCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 264 TGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 264 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
-.....++-|.+|||++.++...++-...+.|.
T Consensus 226 ----taag~VRR~L~~aGF~V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 226 ----SSSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS 258 (308)
T ss_dssp ----CCCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred ----eCcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence 012345778899999988776665545555553
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0075 Score=57.67 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCe
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-------------PGIKCTVLDL-PHAVANLPE------ADNL 194 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------P~~~~~~~Dl-p~~~~~a~~------~~ri 194 (301)
+..++ +.++ .....+|+|-+||+|.++....+.- ....+.++|+ +.+...|+. .+..
T Consensus 206 v~lmv-~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 206 VRFMV-EVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHH-HHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHH-Hhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccc
Confidence 44455 5554 4456799999999999998876531 1356899999 666555542 2233
Q ss_pred EEEeCCCCC-CC----C--cchhHHH---------------------------HHHHHHHHhcc-------cCCCCcEEE
Q 043533 195 KYIAGDMLR-FI----P--PANAFLF---------------------------KILKKRREAIA-------SNGERGKVI 233 (301)
Q Consensus 195 ~~~~~D~~~-~~----p--~~D~i~~---------------------------~iL~~~~~aL~-------p~~~gg~l~ 233 (301)
.+..+|.+. +. + .||+|+. ..++.+.+.|+ | ||++.
T Consensus 283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~a 359 (530)
T 3ufb_A 283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAA 359 (530)
T ss_dssp EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEE
T ss_pred cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEE
Confidence 556777664 32 1 1787776 45777777776 5 88887
Q ss_pred EEee
Q 043533 234 IIDI 237 (301)
Q Consensus 234 i~e~ 237 (301)
++=+
T Consensus 360 vVlP 363 (530)
T 3ufb_A 360 VVVP 363 (530)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.014 Score=51.40 Aligned_cols=41 Identities=15% Similarity=0.004 Sum_probs=34.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE 190 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~ 190 (301)
.....|||++||+|.++.++++. +.+++++|+ |.+++.|++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 34679999999999999998887 468999999 888777663
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.27 Score=38.76 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC---
Q 043533 119 INQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-----PHAVANLPE--- 190 (301)
Q Consensus 119 ~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-----p~~~~~a~~--- 190 (301)
+.+.|..-|.+.- ....+.. ..+. .-...|+|+|=|.|.+=-.|.+.+|+-++.++|. |+.+.....
T Consensus 15 RLDsfirRltaQR-~~L~~a~-~~v~---~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~il 89 (174)
T 3iht_A 15 RLDLFIDRMVSQR-ACLEHAI-AQTA---GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLIL 89 (174)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH-HHTT---TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEE
T ss_pred HHHHHHHHHHHHH-HHHHHHH-HHhc---CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheec
Confidence 4456666665321 1122233 3322 2357899999999999999999999999999997 444333221
Q ss_pred --------------CCCeEEEeCCCCCCCCcchhHHHHHH-HHHHHhcccCCCCcEEEEEeeee
Q 043533 191 --------------ADNLKYIAGDMLRFIPPANAFLFKIL-KKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 191 --------------~~ri~~~~~D~~~~~p~~D~i~~~iL-~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+..+.+...|+=.-.++-|+.+..-| .-+...|.| |.++|...-+
T Consensus 90 Gdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~----GGi~vS~~pl 149 (174)
T 3iht_A 90 GDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQ----GGLMVSSDRM 149 (174)
T ss_dssp SCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEE----EEEEEESSCC
T ss_pred ccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcC----CcEEEeCCcc
Confidence 45677777777544555677777444 445578899 5566665433
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.069 Score=46.54 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=68.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC----CC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRF----IP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~----~p 206 (301)
..++ +.+.. + +...+||+=+|||.+++++++ +.-+++.+|+ +..++..++ .++++++..|.++- .|
T Consensus 81 ~~yf-~~l~~-~-n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~ 155 (283)
T 2oo3_A 81 LEYI-SVIKQ-I-NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP 155 (283)
T ss_dssp HHHH-HHHHH-H-SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS
T ss_pred HHHH-HHHHH-h-cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC
Confidence 3455 55541 3 356789999999999999998 3478999999 777665554 57899999996541 12
Q ss_pred --c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 207 --P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 207 --~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
. +|+|++ ++++.+.+..+- .++|.++|-=++...
T Consensus 156 ~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 156 PPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVNK 203 (283)
T ss_dssp CTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHH-CTTSEEEEEEEESSH
T ss_pred CCCCccEEEECCCCCCCcHHHHHHHHHHHhCcc-CCCeEEEEEEeccch
Confidence 2 888888 556556554432 126777776666554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.019 Score=64.41 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=59.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCeEEEeCCCCCC---CCc-chhHHH---
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPG-----IKCTVLDL-PHAVANLPEA---DNLKYIAGDMLRF---IPP-ANAFLF--- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~-----~~~~~~Dl-p~~~~~a~~~---~ri~~~~~D~~~~---~p~-~D~i~~--- 213 (301)
.-+||+||+|+|..+..+++...+ .+.+..|. +...+.+++. -.++...-|...+ .+. ||+|++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 358999999999877776665432 25677777 5555555541 1233221233222 223 888875
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
..|+++++.|+| ||++++.+..... ..+ .....++-. ...++...+.++|.++|.++||..+
T Consensus 1321 l~~t~~~~~~l~~~~~lL~p---~G~l~~~e~~~~~-~~g----~~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf~~~ 1390 (2512)
T 2vz8_A 1321 LATLGDPAVAVGNMAATLKE---GGFLLLHTLLAGH-PLG----EMVGFLTSP--EQGGRHLLSQDQWESLFAGASLHLV 1390 (2512)
T ss_dssp -----------------------CCEEEEEEC---------------------------------CTTTTSSTTTTEEEE
T ss_pred ccccccHHHHHHHHHHhcCC---CcEEEEEeccccc-ccc----ccccccccc--cccCCcccCHHHHHHHHHhCCCcee
Confidence 678999999999 8998887753210 000 000001000 0011223467789999999999987
Q ss_pred EEEe
Q 043533 286 KITP 289 (301)
Q Consensus 286 ~~~~ 289 (301)
....
T Consensus 1391 ~~~~ 1394 (2512)
T 2vz8_A 1391 ALKR 1394 (2512)
T ss_dssp EEEE
T ss_pred eecc
Confidence 6643
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.49 Score=46.47 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=86.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFP--------GIKCTVLDLPHAVANLPE------------------------------ 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P--------~~~~~~~Dlp~~~~~a~~------------------------------ 190 (301)
+...||-||||.=....+|...+| ++++.=+|+|++++.=++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999999998766 677888888987652110
Q ss_pred CCCeEEEeCCCCCC--C-----------Cc------chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 191 ADNLKYIAGDMLRF--I-----------PP------ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 191 ~~ri~~~~~D~~~~--~-----------p~------~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
.++..+++.|+.+. + +. +..+++ ++|+.+.+ + + ++.++++|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 15889999999862 1 11 122222 88888874 4 5 588999998877543
Q ss_pred cchhhhhhhhhhchhhcc--c-cCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 244 EEHELTETKFLFDIVMSV--N-ATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 244 ~~~~~~~~~~~~d~~~~~--~-~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.++ +.. .+...+...- . .-....+.++..+.|.+.||+.+....+
T Consensus 262 ~d~-f~~-~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSK-QMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHH-HHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHH-HHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 332 111 0000110000 0 0012347999999999999998776543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.87 E-value=0.3 Score=41.84 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=33.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP 189 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~ 189 (301)
.....|||..||+|.++.+..+. +.+++++|+ |..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 45679999999999999999887 468999999 76666544
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.21 Score=42.88 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=60.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec----hHHH------------------------h------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA-------FPGIKCTVLDL----PHAV------------------------A------ 186 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~-------~P~~~~~~~Dl----p~~~------------------------~------ 186 (301)
.-++.|+++|+-.|..++.++.. +++-++.++|. |+.- .
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 33579999999999988887652 56789999995 3310 0
Q ss_pred -cCCC----CCCeEEEeCCCCCCC-------Cc--chhHHH---------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 187 -NLPE----ADNLKYIAGDMLRFI-------PP--ANAFLF---------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 187 -~a~~----~~ri~~~~~D~~~~~-------p~--~D~i~~---------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
..+. .++|+++.|++.+.+ |. +|++++ ..|..+...|+| |.++|+|..
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~----GGvIv~DD~ 218 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTK----GSIVAFDEL 218 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE----EEEEEESST
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCC----CcEEEEcCC
Confidence 0001 378999999986522 22 455544 788999999999 557777654
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.31 Score=35.51 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=32.3
Q ss_pred CChHHH--HHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 7 QGAKEL--FQGQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 7 ~~~~~~--~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.++.|. ++.|++|+..|.+|+.|..|||+.+|++...+.
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stIS 76 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATIT 76 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhh
Confidence 366676 456999999999889999999999999876554
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=87.75 E-value=0.22 Score=35.62 Aligned_cols=44 Identities=11% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------e-ecCCCeEEcChhcc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------V-NGQEEAYGLTAAST 60 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------v-e~~~~~y~~t~~s~ 60 (301)
.++.|+..| +++.|+.|||+.++++...+. | ... |.|.+++.++
T Consensus 32 ~r~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~ 87 (96)
T 1y0u_A 32 VRRKILRML-DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGK 87 (96)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEECTTTC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEECCCch
Confidence 467889999 899999999999999888776 2 223 6899998765
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=87.36 E-value=0.78 Score=42.05 Aligned_cols=54 Identities=7% Similarity=-0.032 Sum_probs=40.5
Q ss_pred cCCCeEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHHhcCCC---------C-CCeEEEeCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIIS-EAFPG-IKCTVLDL-PHAVANLPE---------A-DNLKYIAGDM 201 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~-~~~P~-~~~~~~Dl-p~~~~~a~~---------~-~ri~~~~~D~ 201 (301)
.+...|+|||++.|.++..++ +.++. .+++.++- |...+..++ . ++++++..-.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 567899999999999999988 66775 79999998 765554432 2 5677666433
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.29 Score=36.32 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhc--CCCCCCce-----------ee-cCCCeEEcChhcchhhc
Q 043533 15 GQAQLYKLIHG-RAITLSELVSAL--DIQPTKTT-----------VN-GQEEAYGLTAASTLLIK 64 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~--~~~~~~l~-----------ve-~~~~~y~~t~~s~~L~~ 64 (301)
++..|.+.|.+ |++|+.+||+.+ +++...+. |+ ...+.|.+|+.+..+..
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 35677888864 999999999999 88888776 22 33458999999984443
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=84.95 E-value=0.79 Score=32.89 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=28.1
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.++.|...|.++|.|+.|||+.+|++...+.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~is~~tvs 54 (102)
T 3pqk_A 24 VRLMLVCTLVEGEFSVGELEQQIGIGQPTLS 54 (102)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCHHHHH
Confidence 4888899998899999999999999998776
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=0.65 Score=45.37 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=23.9
Q ss_pred CeEEEecCCccHHHHHHHHHC-------CC-----CeEEEeec
Q 043533 151 GSLVDVGGGNVSFSRIISEAF-------PG-----IKCTVLDL 181 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~-------P~-----~~~~~~Dl 181 (301)
-+|+|+|-|+|.......+.+ |+ ++++.++.
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 110 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 110 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeC
Confidence 489999999999888776642 32 56888886
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=0.74 Score=45.11 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred CCeEEEecCCccHHHHHHHHHC-------CC-----CeEEEeec
Q 043533 150 LGSLVDVGGGNVSFSRIISEAF-------PG-----IKCTVLDL 181 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~-------P~-----~~~~~~Dl 181 (301)
.-+|+|+|-|+|.....+.+.+ |+ ++++.++.
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 102 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEK 102 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeC
Confidence 3589999999999888876642 33 67888886
|
| >3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=81.62 E-value=1.3 Score=33.13 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=31.4
Q ss_pred ChHHH--HHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 8 GAKEL--FQGQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 8 ~~~~~--~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
++.|+ |+.|+.|+..|.+| .|..|||+.+|++..-+.
T Consensus 55 T~~E~~aLs~R~eV~klL~~G-~syreIA~~~g~S~aTIs 93 (119)
T 3kor_A 55 TVNEIQSLSQRLQVAKMIKQG-YTYATIEQESGASTATIS 93 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHCCCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHH
Confidence 56666 66789999999977 999999999999877664
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=80.55 E-value=0.3 Score=32.58 Aligned_cols=31 Identities=6% Similarity=0.220 Sum_probs=25.4
Q ss_pred HHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG--RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~ 45 (301)
.+..|.++|.+ +|+|..|||+.+|++...+.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~ 43 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLN 43 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHH
Confidence 46677888853 68999999999999987766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 301 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 5e-72 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 9e-60 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 4e-46 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 5e-29 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-23 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 1e-06 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 220 bits (561), Expect = 5e-72
Identities = 108/246 (43%), Positives = 154/246 (62%), Gaps = 16/246 (6%)
Query: 69 CLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA 128
CL+P V +DP + L W +LTL+ G FW+F+++NP N FN+AMA
Sbjct: 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61
Query: 129 SDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANL 188
SDS+++ + +C +F+GL S+VDVGGG + ++II E FP +KC V D P V NL
Sbjct: 62 SDSKLINLALR--DCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119
Query: 189 PEADNLKYIAGDMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIII 235
++NL Y+ GDM IP A+A L K ILKK +EA+ ++G+RGKV II
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179
Query: 236 DIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKS 295
D+VI+ +++E+++T+ K L D+ M+ GKER E EW KLF +A F HYKI+P+ G S
Sbjct: 180 DMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 296 LIEVYP 301
LIE+YP
Sbjct: 239 LIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 189 bits (480), Expect = 9e-60
Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 19/245 (7%)
Query: 70 LSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMAS 129
L+ + P + + + ++ L++ VHG+ +EFM ++ +NQ FN++M
Sbjct: 4 LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD 63
Query: 130 DSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189
++ E FEG+ +LVDVGGG+ +I +P IK DLP + N P
Sbjct: 64 VCATEMKRML--EIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 121
Query: 190 EADNLKYIAGDMLRFIPPANAFLF-------------KILKKRREAIASNGERGKVIIID 236
++++ GDM +P +A + + L +A+ GKVII++
Sbjct: 122 PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVE 178
Query: 237 IVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT-PIFGMKS 295
++ E E ++ D +M + G+ERTE ++ KL + FS +++ F
Sbjct: 179 FILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLG 238
Query: 296 LIEVY 300
++E Y
Sbjct: 239 VMEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 153 bits (388), Expect = 4e-46
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 14/241 (5%)
Query: 69 CLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA 128
+S + D + + L + +G+ +E+ +P N+ FN+ M+
Sbjct: 4 SISALNLMNQDKVLMESWYHLKDAVL-DGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMS 62
Query: 129 SDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANL 188
S I ++ E FEGL SLVDVGGG + I +P IK DLPH + +
Sbjct: 63 DHSTITMKKIL--ETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 189 PEADNLKYIAGDMLRFIPPANAFLFKI----------LKKRREAIASNGERGKVIIIDIV 238
P ++++ GDM IP A+A K LK + + + GKVI+ + +
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 239 INAEEEEHELTETKFLFDIVM-SVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLI 297
+ + T+ D++M + N GKERT+ E+ L A F +K+ ++
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 298 E 298
E
Sbjct: 241 E 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 109 bits (272), Expect = 5e-29
Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 28/224 (12%)
Query: 101 WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGN 160
+ +G FWE ++ + A+ F+ M+ D ++ + + + ++DVGGGN
Sbjct: 36 YAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD---WSAVRHVLDVGGGN 92
Query: 161 VSFSRIISEAFPGIKCTVLDLPHAV-------ANLPEADNLKYIAGDMLRFIPPANAFLF 213
I+ P ++ T+++L A+ AD + GD + +P +
Sbjct: 93 GGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVL 152
Query: 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 262
L R + + G+++++D + T L D+ M
Sbjct: 153 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFST--LLDLRMLTF 210
Query: 263 ATGKERTESEWAKLFFDAVFSHYKITPIFGMK-----SLIEVYP 301
G+ RT E L A + S++E
Sbjct: 211 MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 94.0 bits (232), Expect = 3e-23
Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 29/224 (12%)
Query: 101 WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGN 160
+E+++G F+E + P + F+ +A D ++ + + ++DVGGG
Sbjct: 35 YESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA---AAYDWTNVRHVLDVGGGK 91
Query: 161 VSFSRIISEAFPGIKCTVLDLPH----AVANLPEADNLKYIAGDMLRFIPPANAFLF--- 213
F+ I+ P + TVL++ A + L + + F P
Sbjct: 92 GGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII 151
Query: 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 262
++ + G+++I + E+ E D+ M V
Sbjct: 152 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD---LHENSFNEQFTELDLRMLVF 208
Query: 263 ATGKERTESEWAKLFFDAVFSHYKITPIFG-----MKSLIEVYP 301
G RT +W L A ++ + SL+ + P
Sbjct: 209 LGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 43.7 bits (103), Expect = 1e-06
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 40/99 (40%)
Query: 7 QGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTK 43
+ E+F+ QA LYK I HG+ I+LS LVS L + +K
Sbjct: 1 RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK 60
Query: 44 -----------------TTVNGQEEAYGLTAASTLLIKD 65
+ +EE+Y LT AS LL++
Sbjct: 61 IGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRG 99
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.75 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.72 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.66 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.65 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.61 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.61 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.59 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.53 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.53 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.48 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.48 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.45 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.42 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.36 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.33 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.33 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.32 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.3 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.3 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.25 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.24 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.23 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.2 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.19 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.19 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.17 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.17 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.16 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.16 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.16 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.15 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.12 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.11 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.09 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.08 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.07 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.96 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.96 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.95 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.95 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.93 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.9 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.85 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.85 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.81 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.8 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.65 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.64 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.57 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.53 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.45 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.45 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.38 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.38 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.37 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.37 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.34 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.31 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.29 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.28 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.27 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.26 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.25 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.24 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.2 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.19 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.17 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.15 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.15 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.06 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.04 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.0 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.97 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.94 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.94 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.94 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.92 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.89 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.7 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.48 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.34 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.25 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.21 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.2 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.09 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.08 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.04 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.95 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.93 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.87 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.4 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.34 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.93 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.67 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.49 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.46 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.96 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.62 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.86 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.81 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.58 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.97 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.56 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.52 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.71 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.38 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.07 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.49 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 89.4 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.99 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 87.74 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.59 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 87.07 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 85.27 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.78 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.68 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 84.39 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.01 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.01 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 80.8 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.1e-45 Score=320.61 Aligned_cols=228 Identities=27% Similarity=0.483 Sum_probs=194.5
Q ss_pred ChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhccc
Q 043533 69 CLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFE 148 (301)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~ 148 (301)
|+++++.+++.+.++++|.+|++++++|++++|+.++|.++|||+.++|+..+.|+++|...+...++.++ +.++ .++
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~-~~~~-~f~ 80 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYT-GFE 80 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHH-HHCC-TTT
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-ccc
Confidence 78999999888889999999999999988788999999999999999999999999999998888888899 8887 378
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH-------------HH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF-------------KI 215 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~-------------~i 215 (301)
+.++|||||||+|.++++++++||+++++++|+|++++.+...+||+++.||+++++|.+|+|++ ++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~i 160 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEF 160 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHH
Confidence 88999999999999999999999999999999999999998899999999999999999999887 99
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec-CCce
Q 043533 216 LKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI-FGMK 294 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~ 294 (301)
|++++++|+| ||+|+|+|.++++....+........+|+.|++..+|++||.+||++||++|||+.+++.+. .+..
T Consensus 161 L~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~ 237 (244)
T d1fp1d2 161 LSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 237 (244)
T ss_dssp HHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTE
T ss_pred HHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCE
Confidence 9999999999 99999999999887654422223457888998888999999999999999999999999765 5778
Q ss_pred eEEEEeC
Q 043533 295 SLIEVYP 301 (301)
Q Consensus 295 ~~i~a~~ 301 (301)
+|||+||
T Consensus 238 ~viE~~K 244 (244)
T d1fp1d2 238 GVMEFYK 244 (244)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=6.3e-44 Score=309.56 Aligned_cols=227 Identities=46% Similarity=0.865 Sum_probs=203.1
Q ss_pred ChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhccc
Q 043533 69 CLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFE 148 (301)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~ 148 (301)
|+..++.++.++.++.+|..|++++++|.+++|+.++|.++|+|+.++|+..+.|+++|...+......+. +. .|.++
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~-~~-~~~~~ 79 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALR-DC-DFVFD 79 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHH-TC-HHHHT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHh-hh-ccccc
Confidence 57778888888888999999999999998889999999999999999999999999999988776655555 43 23478
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH-------------HH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF-------------KI 215 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~-------------~i 215 (301)
+..+|||||||+|.+++.++++||+++++++|+|++++.+...+||+++.||+++++|.+|+|++ +|
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i 159 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI 159 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence 88999999999999999999999999999999999999999899999999999999888999987 89
Q ss_pred HHHHHHhcccCCCC---cEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 216 LKKRREAIASNGER---GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 216 L~~~~~aL~p~~~g---g~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
|++++++|+| | |+++|+|.++++....+........+|++|++ .+|++||.+||++||++|||+.++++++++
T Consensus 160 L~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~ 235 (244)
T d1fp2a2 160 LKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTG 235 (244)
T ss_dssp HHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence 9999999999 7 89999999999877654332334567888875 689999999999999999999999999999
Q ss_pred ceeEEEEeC
Q 043533 293 MKSLIEVYP 301 (301)
Q Consensus 293 ~~~~i~a~~ 301 (301)
..++||+||
T Consensus 236 ~~svIE~~p 244 (244)
T d1fp2a2 236 FLSLIEIYP 244 (244)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.2e-43 Score=308.06 Aligned_cols=228 Identities=28% Similarity=0.429 Sum_probs=204.3
Q ss_pred CCChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhc
Q 043533 67 PYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI 146 (301)
Q Consensus 67 ~~~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~ 146 (301)
+.|+++++.++.++.+++.|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|+++|...+....+.++ +.++|
T Consensus 2 ~~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~-~~~~~- 78 (243)
T d1kyza2 2 GVSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKIL-ETYTG- 78 (243)
T ss_dssp SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHH-HHCCT-
T ss_pred CCcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHH-Hhccc-
Confidence 3589999999877788999999999999998 78999999999999999999999999999998887788888 88873
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH-------------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLF------------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~------------- 213 (301)
+++.++|||||||+|.++++++++||+++++++|+|++++.+...+|++++.+|+++++|.+|+|++
T Consensus 79 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~ 158 (243)
T d1kyza2 79 FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCL 158 (243)
T ss_dssp TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHH
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHH
Confidence 4667899999999999999999999999999999999999999899999999999999998887776
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
++|++++++|+| ||+++|+|.++++....+........+|+.||+. .+|++||.+||++||++|||+.+++++.++
T Consensus 159 ~iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~ 235 (243)
T d1kyza2 159 KFLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAF 235 (243)
T ss_dssp HHHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEET
T ss_pred HHHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999999999 9999999999987665432222335689998876 489999999999999999999999999988
Q ss_pred ceeEEEEe
Q 043533 293 MKSLIEVY 300 (301)
Q Consensus 293 ~~~~i~a~ 300 (301)
.++|||.+
T Consensus 236 ~~~viE~~ 243 (243)
T d1kyza2 236 NTYIMEFL 243 (243)
T ss_dssp TEEEEEEC
T ss_pred CCEEEEeC
Confidence 89999963
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=6.9e-40 Score=286.53 Aligned_cols=227 Identities=19% Similarity=0.261 Sum_probs=194.6
Q ss_pred CCCChhhhhhhhcCccc-hhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhh
Q 043533 66 KPYCLSPTVSVFVDPFF-VAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECK 144 (301)
Q Consensus 66 ~~~~l~~~~~~~~~~~~-~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~ 144 (301)
+|.++++++.+...... ..+|.+|.+++|+|+ ++|+..+|.++|+|+.++|+..+.|+++|...+...++.++ +.++
T Consensus 1 hp~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~-~~~d 78 (256)
T d1qzza2 1 HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPA-DAYD 78 (256)
T ss_dssp CTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHH-HTSC
T ss_pred CcHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHH-hcCC
Confidence 47788999977532222 347999999999998 57999999999999999999999999999999888889999 9998
Q ss_pred hcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH---
Q 043533 145 QIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF--- 213 (301)
Q Consensus 145 ~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~--- 213 (301)
|++.++|||||||+|.++..++++||+++++++|+|++++.+++ .+|++++.+|+++++|. +|+|++
T Consensus 79 --~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~v 156 (256)
T d1qzza2 79 --WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 156 (256)
T ss_dssp --CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESC
T ss_pred --CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccc
Confidence 89999999999999999999999999999999999999887763 68999999999998886 999887
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
++|++++++|+| ||+++|+|.+.+++....+ .....+|+.|+...+|++||.+||+++|++|||+
T Consensus 157 Lh~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~~--~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR--FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H--HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred ccccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCcccH--HHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence 889999999999 9999999987665433221 2346789999988899999999999999999999
Q ss_pred eeEEEecCC-----ceeEEEEeC
Q 043533 284 HYKITPIFG-----MKSLIEVYP 301 (301)
Q Consensus 284 ~~~~~~~~~-----~~~~i~a~~ 301 (301)
+++++.++. ..+|||+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 232 LASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEEEECCSSCSSCEEEEEEEE
T ss_pred eeEEEEeCCcCccCceEEEEEEe
Confidence 999987642 469999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=1.1e-37 Score=272.11 Aligned_cols=209 Identities=23% Similarity=0.381 Sum_probs=184.2
Q ss_pred hhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccH
Q 043533 83 VAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVS 162 (301)
Q Consensus 83 ~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~ 162 (301)
..+|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|.++|...+....+.++ +.++ |++.++|||||||+|.
T Consensus 18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~-~~~d--~~~~~~VLDvGcG~G~ 93 (253)
T d1tw3a2 18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA-AAYD--WTNVRHVLDVGGGKGG 93 (253)
T ss_dssp GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHH-HHSC--CTTCSEEEEETCTTSH
T ss_pred cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHH-hhcC--CccCCEEEEeCCCCCH
Confidence 467999999999998 57999999999999999999999999999998888889999 9999 8999999999999999
Q ss_pred HHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-------------HHHHHHHH
Q 043533 163 FSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF-------------KILKKRRE 221 (301)
Q Consensus 163 ~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~-------------~iL~~~~~ 221 (301)
++..+++++|+++++++|+|++++.+++ .+||+++.+|++++.|. ||+|++ ++|+++++
T Consensus 94 ~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~ 173 (253)
T d1tw3a2 94 FAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAE 173 (253)
T ss_dssp HHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHH
Confidence 9999999999999999999988887764 58999999999987776 999887 78999999
Q ss_pred hcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCC-----ceeE
Q 043533 222 AIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFG-----MKSL 296 (301)
Q Consensus 222 aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-----~~~~ 296 (301)
+|+| ||+|+|.|...++....+ .....+|+.|+...+|++||.+||+++|++|||++++++.++. ...+
T Consensus 174 ~LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~l 247 (253)
T d1tw3a2 174 ALEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSL 247 (253)
T ss_dssp TEEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEE
T ss_pred hcCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEE
Confidence 9999 999999998766554432 2345688898888899999999999999999999999887642 3567
Q ss_pred EEEeC
Q 043533 297 IEVYP 301 (301)
Q Consensus 297 i~a~~ 301 (301)
|+..|
T Consensus 248 i~~~P 252 (253)
T d1tw3a2 248 LVLAP 252 (253)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 77654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.75 E-value=4.1e-18 Score=144.35 Aligned_cols=151 Identities=11% Similarity=0.061 Sum_probs=109.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~-- 213 (301)
.+...+|||||||+|..+..|++. +|+.+++++|+ ++|++.|++ ..++.+..+|+.+ +.+.+|++++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 456689999999999999999986 58999999999 999998874 4678888889876 5555777665
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc--------------cCCccC
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--------------ATGKER 268 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~--------------~~g~~r 268 (301)
++|++++++|+| ||.+++.|...+.+........ .....+..... ..-...
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLI-DLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHHHH-HHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhHHH-HHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 899999999999 9999999988776654321100 01111100000 001346
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 269 TESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 269 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
+.+++.++|+++||+.++++.-......+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 899999999999999998764433344455654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.72 E-value=6.2e-18 Score=148.10 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=110.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
+..+. ...+ +++..+|||||||+|.++..|++++ +.+++++|+ |.+++.|++ .++|+|+.+|+.+ |+
T Consensus 56 ~~~l~-~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 56 ASELA-MTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHH-HTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHH-HhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 34455 5555 7788999999999999999999876 679999999 888887774 5799999999988 77
Q ss_pred Cc--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 206 PP--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 206 p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
|. ||+|++ ++|++++++|+| ||++++.+....+..... ......+...+ ....+..+
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~s~~~ 201 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRIKL----HDMGSLGL 201 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHHTC----SSCCCHHH
T ss_pred cccccchhhccchhhhccCHHHHHHHHHHhcCC---CcEEEEEEeecCCCCchh---HHHHHHHHhcc----CCCCCHHH
Confidence 75 999887 999999999999 999999998777654332 11112222211 12357899
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
|.++++++||+.+.+...
T Consensus 202 ~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 202 YRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHcCCceEEEEEC
Confidence 999999999999887754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=5.9e-18 Score=143.40 Aligned_cols=141 Identities=13% Similarity=0.245 Sum_probs=108.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~ 207 (301)
..++ +..+ +.+..+|||||||+|.++..++++.+ +++++|+ +++++.|++ .++++|+.+|+.+ |+|.
T Consensus 5 ~~ll-~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 5 AKLM-QIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHH-HHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHH-HhcC--CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccc
Confidence 3466 6666 88889999999999999999998864 7999999 888888764 5889999999987 7765
Q ss_pred --chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh--hccccCCccCCHHH
Q 043533 208 --ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV--MSVNATGKERTESE 272 (301)
Q Consensus 208 --~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~g~~rt~~e 272 (301)
||+|++ ++|++++++|+| ||++++.+...+...... ..++.. .......+.++..+
T Consensus 80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 150 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKK---GGQLLLVDNSAPENDAFD------VFYNYVEKERDYSHHRAWKKSD 150 (231)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEEEBCSSHHHH------HHHHHHHHHHCTTCCCCCBHHH
T ss_pred cccccccccccccccCCHHHHHHHHHHhcCC---CcEEEEEeCCCCCCHHHH------HHHHHHHhhcccCcccCCCHHH
Confidence 999987 999999999999 999999988766543211 111111 01112234678899
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
|.++|+++||+++++...
T Consensus 151 ~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEe
Confidence 999999999998876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.4e-16 Score=136.48 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=107.5
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~ 207 (301)
..+. +.+. +.+..+|||||||+|.++..++++++ ++++++|+ +.+++.+++ .+||+|+.+|+.+..++
T Consensus 23 ~~l~-~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~ 98 (245)
T d1nkva_ 23 ATLG-RVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98 (245)
T ss_dssp HHHH-HHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHH-HHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence 3455 6666 77789999999999999999998875 79999999 888887764 57899999999874443
Q ss_pred --chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 --ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 --~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ ++|++++++|+| ||++++.+.......... ........ .......+..++.
T Consensus 99 ~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~ 168 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGGFAGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQACGV----SSTSDFLTLPGLV 168 (245)
T ss_dssp SCEEEEEEESCGGGTSSSHHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTTTC----SCGGGSCCHHHHH
T ss_pred CceeEEEEEehhhccCCHHHHHHHHHHHcCc---CcEEEEEeccccCCCChH---HHHHHhcc----CCCcccCCHHHHH
Confidence 998886 999999999999 999999887665543322 11111111 1122356889999
Q ss_pred HHHHhCCCceeEEEec
Q 043533 275 KLFFDAVFSHYKITPI 290 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~ 290 (301)
++++++||+.+.....
T Consensus 169 ~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 169 GAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHTTTBCCCEEEEC
T ss_pred HHHHHcCCEEEEEEeC
Confidence 9999999998876543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=1.6e-16 Score=135.15 Aligned_cols=139 Identities=14% Similarity=0.234 Sum_probs=107.9
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc-
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~- 207 (301)
-++ +.++ +++..+|||||||+|.++..++++++ +++++|+ +.+++.|++ .+++.++.+|+.+ |+|.
T Consensus 7 ~l~-~~~~--~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 7 LMI-KTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHH-HHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred HHH-HHhC--CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence 356 7777 88899999999999999999999864 7999999 888888764 4789999999988 7775
Q ss_pred -chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhch-hhc-cccCCccCCHHHH
Q 043533 208 -ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMS-VNATGKERTESEW 273 (301)
Q Consensus 208 -~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~-~~~-~~~~g~~rt~~e~ 273 (301)
||+|++ .+|++++++|+| ||++++.+...++...-. ..++. ... .....+..+..+|
T Consensus 82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T d1xxla_ 82 SFDIITCRYAAHHFSDVRKAVREVARVLKQ---DGRFLLVDHYAPEDPVLD------EFVNHLNRLRDPSHVRESSLSEW 152 (234)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHH------HHHHHHHHHHCTTCCCCCBHHHH
T ss_pred ccceeeeeceeecccCHHHHHHHHHHeeCC---CcEEEEEEcCCCCCHHHH------HHHHHHHhhCCCcccccCCHHHH
Confidence 999887 999999999999 899999887665433211 11111 111 1123456789999
Q ss_pred HHHHHhCCCceeEEEe
Q 043533 274 AKLFFDAVFSHYKITP 289 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~ 289 (301)
..+++++||....+..
T Consensus 153 ~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 153 QAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEE
Confidence 9999999998876644
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=8.7e-16 Score=127.95 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=93.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF---------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~---------- 213 (301)
.+..+|||||||+|.++..+. +.+++|+ +.+++.+++ .+++++.+|+.+ ++++ ||+|++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence 334689999999999988774 4589999 999998874 479999999987 6664 999987
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
++|++++++|+| ||.+++.+...... ... . .......... ......+|.+++.++|+++||+++++..
T Consensus 108 ~~~l~~~~~~L~p---gG~l~i~~~~~~~~-~~~-~--~~~~~~~~~~-~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 ERALKEAYRILKK---GGYLIVGIVDRESF-LGR-E--YEKNKEKSVF-YKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHEEE---EEEEEEEEECSSSH-HHH-H--HHHTTTC-CC-STTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhhhhhcCCC---CceEEEEecCCcch-hHH-h--hhhccccccc-cccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 899999999999 89888887533211 100 0 0011111111 1234567999999999999999998765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.61 E-value=5.1e-16 Score=133.89 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=103.2
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--c
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP--A 208 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~--~ 208 (301)
.++ +.++ ..+..+|||||||+|.++..|+..+++ +++++|. +.+++.|++ .++++|+.+|+.+ +++. |
T Consensus 84 ~fl-~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 84 NFI-ASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHH-HTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHH-hhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence 455 5555 566789999999999999999887755 7999999 889988874 4668999999977 5553 9
Q ss_pred hhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHH
Q 043533 209 NAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 275 (301)
Q Consensus 209 D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ 275 (301)
|+|++ ++|++++++|+| ||.++|.+......... +|.. .+...||.++|++
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~~----d~~~~rs~~~~~~ 223 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDKE----DSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EETT----TTEEEBCHHHHHH
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------eccc----CCceeCCHHHHHH
Confidence 99987 779999999999 89999988755433211 1111 2233579999999
Q ss_pred HHHhCCCceeEEEec
Q 043533 276 LFFDAVFSHYKITPI 290 (301)
Q Consensus 276 ll~~aGf~~~~~~~~ 290 (301)
+|+++||++++...-
T Consensus 224 l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 224 LFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHTCCEEEEEEC
T ss_pred HHHHcCCEEEEEEee
Confidence 999999999987653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.8e-16 Score=130.64 Aligned_cols=126 Identities=12% Similarity=0.132 Sum_probs=99.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
..+..+|||||||+|.++..+++.++. +++++|+ +.+++.|++ ..+++|+.+|+.+ +++. ||+|++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 355689999999999999999877764 8999999 899988764 3568999999987 5543 898887
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
++|+++++.|+| ||.+++.+...++...- +- ......|+.++|+++|+++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~----------~~----~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVIL----------DD----VDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEE----------ET----TTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEEEccccccccc----------cc----CCceeeCCHHHHHHHHHHcCCE
Confidence 799999999999 89999988765543211 10 0122346899999999999999
Q ss_pred eeEEEec
Q 043533 284 HYKITPI 290 (301)
Q Consensus 284 ~~~~~~~ 290 (301)
+++....
T Consensus 200 ii~~~~q 206 (222)
T d2ex4a1 200 LLAEERQ 206 (222)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9987664
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.53 E-value=5.7e-15 Score=129.05 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=99.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~---- 213 (301)
+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++ ..+++|+.+|+.+ ++++ ||+|++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 677889999999999999999998874 78999999 888888774 4479999999987 6666 999987
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCC--------ccchhhhhhhhhhchh-hccccCCccC-CHHHHHHH
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAE--------EEEHELTETKFLFDIV-MSVNATGKER-TESEWAKL 276 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~--------~~~~~~~~~~~~~d~~-~~~~~~g~~r-t~~e~~~l 276 (301)
++|++++++|+| ||.+++.|+..... ...+.+.....+..+. ......|... ...++..+
T Consensus 105 ~~~~d~~~~l~~~~~~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 181 (281)
T d2gh1a1 105 LHMTTPETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 181 (281)
T ss_dssp GGCSSHHHHHHHHHHTEEE---EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHHHH
T ss_pred hcCCCHHHHHHHHHHHcCc---CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 899999999999 99999998532111 0000000000000110 0011223322 22467889
Q ss_pred HHhCCCceeEEEec
Q 043533 277 FFDAVFSHYKITPI 290 (301)
Q Consensus 277 l~~aGf~~~~~~~~ 290 (301)
|+++||+.+++.-.
T Consensus 182 l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 182 LSELGVKNIECRVS 195 (281)
T ss_dssp HHHTTCEEEEEEEC
T ss_pred HHHcCCeEEEEEEe
Confidence 99999999987644
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=8.1e-15 Score=125.25 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
..+.++|||||||+|.++..|+++. .+++++|+ +.|++.|++ ..+++++.+|+.+ +++. ||+|++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhh
Confidence 4566799999999999999999975 57999999 899998875 4589999999987 7776 998765
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ---------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~L~~~~~~Lkp---gG~lii~ 144 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 899999999999 7877653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=7.7e-15 Score=125.39 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-chhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-ANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-~D~i~~------ 213 (301)
....+|||||||+|.++..+++++. +++++|+ +.|++.|++ ..+++++.+|+.+ +++. ||+|++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 3457999999999999999999864 7999999 899988864 5689999999987 5565 997764
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEE
Q 043533 214 ---------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++|+++++.|+| ||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 799999999999 776554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=7.5e-14 Score=121.81 Aligned_cols=148 Identities=11% Similarity=0.140 Sum_probs=109.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.+. +.++.+|||||||.|.++..+++++ +++++++++ ++.++.|++ .+++++..+|+.+ +|
T Consensus 51 ~~~~~-~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~ 125 (285)
T d1kpga_ 51 IDLAL-GKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FD 125 (285)
T ss_dssp HHHHH-TTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CC
T ss_pred HHHHH-HHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-cc
Confidence 35567 7776 8888999999999999999999998 589999999 665555442 6899999999854 34
Q ss_pred c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh----hh-hhhhhhch-hhccccCCc
Q 043533 207 P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE----LT-ETKFLFDI-VMSVNATGK 266 (301)
Q Consensus 207 ~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~----~~-~~~~~~d~-~~~~~~~g~ 266 (301)
. ||.|++ .++++++++|+| ||+++|.+.....+..... .. ......++ .-.+..+|.
T Consensus 126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~ 202 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGR 202 (285)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCC
T ss_pred ccccceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCC
Confidence 4 776665 899999999999 9999998877554322100 00 00111121 112236778
Q ss_pred cCCHHHHHHHHHhCCCceeEEEec
Q 043533 267 ERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 267 ~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.++..++.++++++||++..+..+
T Consensus 203 lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 203 LPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp CCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCChhhHHHHHHHhchhhcccccc
Confidence 889999999999999999998775
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=5.1e-14 Score=119.18 Aligned_cols=132 Identities=10% Similarity=0.057 Sum_probs=100.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC--CCc--chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRF--IPP--ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~--~p~--~D~i~~---- 213 (301)
+.+..+|||||||+|.++..|++..|+.+++++|+ |.+++.+.. .+++..+.+|...+ ++. +|++++
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 67788999999999999999999999999999999 877776553 67888899988763 222 343332
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+++++++.|+| ||+++|.+.....+...++ ....+++.+.|+++||++++
T Consensus 152 ~~~~~~~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~~-------------------~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 152 AQPNQAEILIKNAKWFLKK---GGYGMIAIKARSIDVTKDP-------------------KEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp CSTTHHHHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSCH-------------------HHHHHHHHHHHHHHTEEEEE
T ss_pred cchHHHHHHHHHHHHhccc---CceEEEEeeccccCCCCCH-------------------HHHHHHHHHHHHHcCCEEEE
Confidence 789999999999 8998888765444332210 01236788999999999999
Q ss_pred EEecCC---ceeEEEEe
Q 043533 287 ITPIFG---MKSLIEVY 300 (301)
Q Consensus 287 ~~~~~~---~~~~i~a~ 300 (301)
...+.+ .+.++.++
T Consensus 210 ~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 210 EVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEECTTTSTTEEEEEEE
T ss_pred EecCCCCcCCeEEEEEE
Confidence 988743 36666653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=9.4e-14 Score=121.53 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=110.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.+. +.++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ .+++.+...|+..+-.
T Consensus 50 ~~~~~-~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 125 (291)
T d1kpia_ 50 RKLAL-DKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE 125 (291)
T ss_dssp HHHHH-HTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCC
T ss_pred HHHHH-HhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccc
Confidence 35567 7776 88899999999999999999999985 69999999 665555442 6789998888743222
Q ss_pred cchhHHH--------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhh-----hhhhhhchh-hc
Q 043533 207 PANAFLF--------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELT-----ETKFLFDIV-MS 260 (301)
Q Consensus 207 ~~D~i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~-----~~~~~~d~~-~~ 260 (301)
.||.|++ .+|++++++|+| ||++++.....++........ ......++. -.
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky 202 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE 202 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH
Confidence 3887775 579999999999 999999988776543221000 001111211 11
Q ss_pred cccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 261 VNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 261 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
...+|...+..++...++++||++..+....
T Consensus 203 iFpgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 203 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred hcCCCCCCCHHHHHhhhcccccccceeeecc
Confidence 2367888999999999999999999987764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=9.4e-14 Score=121.02 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=107.9
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.+. +.++.+|||||||.|.++..++++++ ++++++|+ ++.++.|++ ..++.+...|+.+ ++
T Consensus 41 ~~~~~-~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~ 115 (280)
T d2fk8a1 41 VDLNL-DKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FA 115 (280)
T ss_dssp HHHHH-TTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CC
T ss_pred HHHHH-HHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hc
Confidence 34567 7776 88889999999999999999988874 69999999 777766553 5678888888753 44
Q ss_pred c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch----hhh-hhhhhhchhh-ccccCCc
Q 043533 207 P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH----ELT-ETKFLFDIVM-SVNATGK 266 (301)
Q Consensus 207 ~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~----~~~-~~~~~~d~~~-~~~~~g~ 266 (301)
. ||.|++ .+|++++++|+| ||+++|.+.+..+..... ... ......|+.. ....+|.
T Consensus 116 ~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~ 192 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGR 192 (280)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCc
Confidence 4 887775 789999999999 999999886654432110 000 0011122211 1236778
Q ss_pred cCCHHHHHHHHHhCCCceeEEEec
Q 043533 267 ERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 267 ~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.++.+++.+.++++||++..+...
T Consensus 193 lPS~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 193 LPSTEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp CCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred ccchHhhhhhHHhhccccceeeec
Confidence 899999999999999999987764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.42 E-value=1.1e-13 Score=116.60 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=94.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCc-chhHHH--------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FIPP-ANAFLF-------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~p~-~D~i~~-------- 213 (301)
+...++|||||||+|.++..++++.. +++++|+ +++++.|++ .++++++.+|+.+ +.+. ||+|++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 44567999999999999999998764 6999999 889998875 5689999999876 4555 999987
Q ss_pred ---HHHHHHH-HhcccCCCCcEEEEEeeeeCCCccchhhhhh----hhhhchh--hccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 ---KILKKRR-EAIASNGERGKVIIIDIVINAEEEEHELTET----KFLFDIV--MSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 ---~iL~~~~-~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~----~~~~d~~--~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
.+|++++ +.|+| ||.+++.-+... ......... .....+. -......+.++.++++++++++||+
T Consensus 96 d~~~~l~~i~~~~Lk~---gG~l~i~~pn~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~ 170 (225)
T d2p7ia1 96 DPVALLKRINDDWLAE---GGRLFLVCPNAN--AVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 170 (225)
T ss_dssp SHHHHHHHHHHTTEEE---EEEEEEEEECTT--CHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHhcCC---CceEEEEeCCcc--cHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCE
Confidence 8899998 68999 787777543211 110000000 0000000 0000122467899999999999999
Q ss_pred eeEEEe
Q 043533 284 HYKITP 289 (301)
Q Consensus 284 ~~~~~~ 289 (301)
+++...
T Consensus 171 i~~~~~ 176 (225)
T d2p7ia1 171 VTYRSG 176 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=4.4e-13 Score=114.91 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=91.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc--chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP--ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~--~D~i~~----- 213 (301)
..+..+|||+|||+|.+++.+++. +.+++++|+ |.+++.|++ +-++.+..+|+.+..+. ||+|++
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence 355689999999999999988876 468999999 999988875 44677889998765443 898876
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.++++++++|+| ||++++.+... ...+++.+.++++||+.++....
T Consensus 196 ~l~~l~~~~~~~Lkp---GG~lilSgil~----------------------------~~~~~v~~~~~~~Gf~~~~~~~~ 244 (254)
T d2nxca1 196 LHAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEEEEEEE
T ss_pred cHHHHHHHHHHhcCC---CcEEEEEecch----------------------------hhHHHHHHHHHHCCCEEEEEEEE
Confidence 888999999999 89888754321 02456788999999999998877
Q ss_pred CCcee
Q 043533 291 FGMKS 295 (301)
Q Consensus 291 ~~~~~ 295 (301)
..+..
T Consensus 245 ~~Wv~ 249 (254)
T d2nxca1 245 GEWVL 249 (254)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 66543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.7e-13 Score=117.37 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chhHHH----HHHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANAFLF----KILKK 218 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~i~~----~iL~~ 218 (301)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ .++++|+.+|+.+ |+++ +|+|++ .-+++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~e 162 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEE 162 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHHHHH
Confidence 4568999999999999999999999999999999 889988876 6889999999988 7765 999987 66799
Q ss_pred HHHhcccCCCCcEEEEEee
Q 043533 219 RREAIASNGERGKVIIIDI 237 (301)
Q Consensus 219 ~~~aL~p~~~gg~l~i~e~ 237 (301)
++++||| ||.+++..+
T Consensus 163 ~~rvLkp---gG~l~~~~p 178 (268)
T d1p91a_ 163 LARVVKP---GGWVITATP 178 (268)
T ss_dssp HHHHEEE---EEEEEEEEE
T ss_pred HHHHhCC---CcEEEEEee
Confidence 9999999 898888765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=8.7e-13 Score=110.19 Aligned_cols=87 Identities=21% Similarity=0.400 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.|++ ..++.++.+|+.+ +++. +|+|++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 355679999999999999999986 568999999 899988874 5678899999988 7764 998887
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
++|++++++|+| ||+++|....
T Consensus 113 ~~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKP---SGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence 789999999999 8988876653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.32 E-value=2.3e-12 Score=106.17 Aligned_cols=94 Identities=22% Similarity=0.233 Sum_probs=76.5
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc-
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~- 207 (301)
.++ .... +..+++|||||||+|..+..++++. .+++++|+ +.+++.+++ -+++.+..+|+.+ +.+.
T Consensus 21 ~~~-~~~~--~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (198)
T d2i6ga1 21 DVL-AAAK--VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGE 95 (198)
T ss_dssp HHH-HHHT--TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCC
T ss_pred HHH-HHcc--cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccc
Confidence 456 5555 4456799999999999999999985 57999999 788887653 4679999999987 4444
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
||+|++ ++|++++++|+| ||.+++....
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~ 136 (198)
T d2i6ga1 96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAM 136 (198)
T ss_dssp EEEEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred ccEEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 998886 799999999999 8888887654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=8e-13 Score=111.85 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=69.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF--------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~--------- 213 (301)
.++..+|||||||+|.++..|++. +.+++++|+ +.+++.|++.....++.+|+.+ ++++ ||+|++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 456789999999999999999876 568999999 9999988863333467789877 7764 998774
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+++++.|+| ||.+++..
T Consensus 118 d~~~~l~~i~r~Lk~---gG~~ii~~ 140 (246)
T d2avna1 118 NKDKAFSEIRRVLVP---DGLLIATV 140 (246)
T ss_dssp CHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hHHHHHHHHHhhcCc---CcEEEEEE
Confidence 899999999999 78776654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.30 E-value=3.4e-12 Score=106.21 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=94.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC-CCc-----chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRF-IPP-----ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~-~p~-----~D~i~~-- 213 (301)
+.+..+|||||||+|.++..|++..|+.+++++|+ |.+++.+++ .+++.++.+|...+ .+. +|+++.
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 77889999999999999999999999999999999 899887764 67899999998763 221 454433
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+++++++.|+| ||+++|.+.....+...++ ...+ .+..+.+ ++||+.++
T Consensus 134 ~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~~----~~~~---------------~~~~~~l-~~gf~i~E 190 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKE---KGEVVIMVKARSIDSTAEP----EEVF---------------KSVLKEM-EGDFKIVK 190 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSCH----HHHH---------------HHHHHHH-HTTSEEEE
T ss_pred cChhhHHHHHHHHHHHhcc---CCeEEEEEEccccCCCCCH----HHHH---------------HHHHHHH-HcCCEEEE
Confidence 789999999999 8999888643322221110 0000 1112233 47999999
Q ss_pred EEecCC---ceeEEEEe
Q 043533 287 ITPIFG---MKSLIEVY 300 (301)
Q Consensus 287 ~~~~~~---~~~~i~a~ 300 (301)
...+.+ .+.+|.++
T Consensus 191 ~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 191 HGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEECTTTCTTEEEEEEE
T ss_pred EEccCCCccCcEEEEEE
Confidence 888743 46677665
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.25 E-value=5.9e-12 Score=107.62 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=69.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC-Cc--chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI-PP--ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~-p~--~D~i~~-- 213 (301)
+...+|||||||+|..+..+++..+ .+++++|+ +++++.|++ ..++.|..+|+.. ++ +. ||+|++
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 5678999999999999999988754 47999999 889888763 4579999999976 43 22 998876
Q ss_pred -------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
++|+++++.|+| ||.+++.
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~ 133 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMT 133 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCC---CCEEEEE
Confidence 789999999999 8877664
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.24 E-value=3.3e-12 Score=105.03 Aligned_cols=90 Identities=14% Similarity=0.326 Sum_probs=74.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCCCc-
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~p~- 207 (301)
++ +.++ ..+..+|||||||+|.++..+++.+| +++++|+ +.+++.+++ ..+++++.+|+++++++
T Consensus 44 Li-~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 44 LV-ENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HH-HHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HH-HhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 55 6665 56788999999999999999999876 5888999 888887763 45799999999886554
Q ss_pred -chhHHH------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 208 -ANAFLF------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 208 -~D~i~~------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
||+|++ ++++++.+.|+| ||.+++.
T Consensus 119 ~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp CEEEEEECCCSTTCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CceEEEEcccEEecchhhhhHHHHHHHhcCc---CcEEEEE
Confidence 998887 789999999999 8887764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.4e-11 Score=106.30 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=91.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc--chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP--ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~--~D~i~~----- 213 (301)
....+|||+|||+|..++.++..+|+++++++|+ +.+++.|++ -+||+|+.+|++++++. ||+|++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 888888875 36899999999987664 998887
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 262 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 262 (301)
++++++.+.|+| ||. +++|.-
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~-l~lEig------------------------ 238 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGF-LLLEHG------------------------ 238 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEE-EEEECC------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCE-EEEEEC------------------------
Confidence 566666777777 443 333320
Q ss_pred cCCccCCHHHHHHHHHhCCCceeEEE-ecCCceeEEEEe
Q 043533 263 ATGKERTESEWAKLFFDAVFSHYKIT-PIFGMKSLIEVY 300 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~a~ 300 (301)
......+.+++++.||..+++. ...+..-+|.|+
T Consensus 239 ----~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 239 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----chHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 0123456788899999877654 456655566654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.22 E-value=1.9e-12 Score=105.76 Aligned_cols=91 Identities=19% Similarity=0.333 Sum_probs=75.9
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--C
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI--P 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~--p 206 (301)
++ ..+. ..+..+|||||||+|.+++.+++.+ .+++++|. |++++.|++ .+||+++.+|+.+ .. +
T Consensus 25 il-~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 25 IM-CLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HH-HHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HH-HhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 55 5555 7788999999999999999998775 48999999 899998875 4799999999876 33 3
Q ss_pred cchhHHH--------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 PANAFLF--------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+|++ .+++++.+.|+| ||++++..
T Consensus 100 ~~D~v~~~~~~~~~~~~~~~~~~~Lkp---gG~lvi~~ 134 (186)
T d1l3ia_ 100 DIDIAVVGGSGGELQEILRIIKDKLKP---GGRIIVTA 134 (186)
T ss_dssp CEEEEEESCCTTCHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CcCEEEEeCccccchHHHHHHHHHhCc---CCEEEEEe
Confidence 4998887 899999999999 88887654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.20 E-value=6.3e-12 Score=107.91 Aligned_cols=111 Identities=12% Similarity=0.250 Sum_probs=91.3
Q ss_pred HHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------
Q 043533 123 FNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ 190 (301)
Q Consensus 123 f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~------ 190 (301)
|...|...++.+ +..++ ..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|. +++++.|++
T Consensus 69 ~~~~~~r~tqiiypkD~s~Ii-~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~ 145 (264)
T d1i9ga_ 69 YVMSMPRGPQVIYPKDAAQIV-HEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 145 (264)
T ss_dssp HHTTSCSCSCCCCHHHHHHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHhhccCCccccchHHHHHHH-HHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc
Confidence 445566655543 33456 6666 888999999999999999999988 89999999999 888888864
Q ss_pred ---CCCeEEEeCCCCC-CCCc--chhHHH------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 191 ---ADNLKYIAGDMLR-FIPP--ANAFLF------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 191 ---~~ri~~~~~D~~~-~~p~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++.++.+|+.+ ++++ ||.|++ .++.+++++||| ||+++++.+..
T Consensus 146 ~~~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~Lkp---GG~lv~~~P~i 203 (264)
T d1i9ga_ 146 GQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVA---GGVLMVYVATV 203 (264)
T ss_dssp TSCCTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEE---EEEEEEEESSH
T ss_pred cCCCceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCC---CCEEEEEeCcc
Confidence 4789999999987 6775 999988 899999999999 89988876433
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=7.8e-13 Score=111.76 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=66.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
..+.+|||||||+|..+..++++.| .+++++|+ |.+++.|++ ..++.++.+|+.. +++. ||.|++
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4567999999999999999998765 48999999 899988864 4667888777543 4553 666542
Q ss_pred -------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.++++++++|+| ||.+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~Lkp---GG~~~~~ 162 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYC 162 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEEC
T ss_pred ccccccccccCHHHHHHHHHHHcCC---CcEEEEE
Confidence 799999999999 8877653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.2e-12 Score=110.12 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC----------------------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADN---------------------------- 193 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~r---------------------------- 193 (301)
.+..+|||||||+|.++..+++.+. .+++++|+ +.+++.|++ ...
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 4457899999999998877766542 37999999 888887753 110
Q ss_pred --e-EEEeCC----CC-CCCCc--chhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh
Q 043533 194 --L-KYIAGD----ML-RFIPP--ANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL 248 (301)
Q Consensus 194 --i-~~~~~D----~~-~~~p~--~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~ 248 (301)
+ .....+ .. .+.+. +|+|++ .+++++++.|+| ||.+++.+..... ...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~-~~~--- 201 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLP-SYM--- 201 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCC-EEE---
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccc-cce---
Confidence 1 111111 11 13333 888764 689999999999 8888887753222 111
Q ss_pred hhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 249 TETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 249 ~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
..+.. ......+.++++++|++|||+++++...
T Consensus 202 -----~~~~~----~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 202 -----VGKRE----FSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp -----ETTEE----EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----ecccc----ccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00000 1122458999999999999998887543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.17 E-value=1.2e-11 Score=100.82 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=72.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCCCC--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------------------ADNLKYIAGDMLRFI-- 205 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~D~~~~~-- 205 (301)
++++.+|||||||+|..+..|+++ +.+++++|+ +.+++.|++ ...++|..+|++...
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 677889999999999999999998 689999999 888887763 345788899998732
Q ss_pred Cc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 206 PP--ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 206 p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
+. +|+|+. ..+++++++|+| ||++++......
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~ 142 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYD 142 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSC
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEcccc
Confidence 22 777654 889999999999 898887665443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.17 E-value=8.9e-12 Score=106.23 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=80.1
Q ss_pred HHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------
Q 043533 123 FNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ 190 (301)
Q Consensus 123 f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~------ 190 (301)
|...|...++.+ +..++ ...+ ...+.+|||+|||+|.++..|++. .|+.+++.+|. ++.++.|++
T Consensus 58 ~~~~~~r~~qiiypkD~~~Ii-~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~ 134 (250)
T d1yb2a1 58 FGRVIRRNTQIISEIDASYII-MRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134 (250)
T ss_dssp HHHHC-------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred HHhhCCCCCcccCHHHHHHHH-HHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc
Confidence 444555554432 23355 5555 788899999999999999999987 78999999999 778887764
Q ss_pred -CCCeEEEeCCCCCCCCc--chhHHH------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 191 -ADNLKYIAGDMLRFIPP--ANAFLF------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 191 -~~ri~~~~~D~~~~~p~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++..+|+.+.+++ ||.|++ .+|++++++|+| ||+++++.
T Consensus 135 ~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~p~~~l~~~~~~LKp---GG~lv~~~ 186 (250)
T d1yb2a1 135 DIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKP---GSVATFYL 186 (250)
T ss_dssp CCTTEEEECSCTTTCCCSCCEEEEEECCSCGGGSHHHHHHTEEE---EEEEEEEE
T ss_pred CCCceEEEEeeeecccccceeeeeeecCCchHHHHHHHHHhcCC---CceEEEEe
Confidence 57899999999876665 999988 899999999999 88887753
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.7e-12 Score=111.14 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKYIAG 199 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~~~~ 199 (301)
..++ +.+. +.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.|++ ..+|+|+.+
T Consensus 141 ~~~~-~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 141 AQMI-DEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHH-HHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHH-HHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 4566 6665 77788999999999999999999999889999999 777776642 468999999
Q ss_pred CCCC-CCCc----chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 200 DMLR-FIPP----ANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 200 D~~~-~~p~----~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
|+.+ ++.+ +|+|++ +.|+++++.||| ||++++.+.+.+.+
T Consensus 218 d~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE---GGRIVSSKPFAPLN 272 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred cccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCC---CcEEEEecccCCCC
Confidence 9987 5443 566664 889999999999 99999888766543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=3.7e-11 Score=101.10 Aligned_cols=119 Identities=5% Similarity=-0.044 Sum_probs=87.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDML 202 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~ 202 (301)
.....+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++..+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 456789999999999999999987 568999999 888865421 468999999998
Q ss_pred C-C-CC-c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCC
Q 043533 203 R-F-IP-P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 265 (301)
Q Consensus 203 ~-~-~p-~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 265 (301)
+ + .+ . +|+|+. ..+++++++|+| ||++++.....+...... ..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~g------pp----------- 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHPG------PP----------- 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCCC------SS-----------
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCCC------CC-----------
Confidence 7 2 32 2 787653 899999999999 898887766544322110 00
Q ss_pred ccCCHHHHHHHHHhCCCceeEEE
Q 043533 266 KERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 266 ~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
...+.+|+++++.. +|.+..+.
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEEE
Confidence 12478999999965 67665543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.16 E-value=1.3e-11 Score=102.19 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc--chhHHH----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP--ANAFLF---- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~--~D~i~~---- 213 (301)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ .++|.++.+|+.. . +|. +|.|++
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 46899999999999999999999999999998 776665543 5789999999865 2 443 665554
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+.++++|+| ||.|+|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 699999999999 89887753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=1.7e-11 Score=105.48 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=86.7
Q ss_pred HHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------
Q 043533 123 FNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ 190 (301)
Q Consensus 123 f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~------ 190 (301)
|...|...++.+ +..++ ..++ +.++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++
T Consensus 76 ~~~~~~r~~qiiypkd~~~Ii-~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g 152 (266)
T d1o54a_ 76 EIMNMKRRTQIVYPKDSSFIA-MMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG 152 (266)
T ss_dssp HHHTCCC-CCCCCHHHHHHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred HHhhccCCccccchHHHHHHH-HhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc
Confidence 445666555533 23456 6666 888999999999999999999987 58999999999 899888875
Q ss_pred -CCCeEEEeCCCCCCCCc--chhHHH------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 191 -ADNLKYIAGDMLRFIPP--ANAFLF------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 191 -~~ri~~~~~D~~~~~p~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++.+..+|+...++. +|.|++ .+|++++++||| ||+++++.
T Consensus 153 ~~~~v~~~~~d~~~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKp---GG~lv~~~ 204 (266)
T d1o54a_ 153 LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKG---GGRFATVC 204 (266)
T ss_dssp CGGGEEEECCCGGGCCSCCSEEEEEECCSCGGGTHHHHHHHEEE---EEEEEEEE
T ss_pred cccCcEEEeccccccccccceeeeEecCCCHHHHHHHHHhhcCC---CCEEEEEe
Confidence 47899999998665553 888877 999999999999 89888764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.12 E-value=1.1e-10 Score=98.00 Aligned_cols=132 Identities=12% Similarity=0.046 Sum_probs=95.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCC--CC----cchhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRF--IP----PANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~--~p----~~D~i~~- 213 (301)
+.++.+|||+|||+|.++..|++. .|+-+++++|+ |.+++.++. ..++..+.+|...+ ++ .+|++++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence 677899999999999999999997 48899999999 888776653 56788888887652 21 2676665
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+++++++.|+| ||+++|.......+...++ .. ...+..++ .+.||+.+
T Consensus 151 ~~~~~~~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~~----~~---------------v~~~v~~l-~~~gf~ii 207 (227)
T d1g8aa_ 151 VAQPTQAKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKEP----EQ---------------VFREVERE-LSEYFEVI 207 (227)
T ss_dssp CCSTTHHHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSCH----HH---------------HHHHHHHH-HHTTSEEE
T ss_pred ccccchHHHHHHHHHHhccc---CCeEEEEEECCccCCCCCH----HH---------------HHHHHHHH-HHcCCEEE
Confidence 789999999999 8988876543222211110 00 11223344 46799999
Q ss_pred EEEecCC---ceeEEEEeC
Q 043533 286 KITPIFG---MKSLIEVYP 301 (301)
Q Consensus 286 ~~~~~~~---~~~~i~a~~ 301 (301)
+...+.+ .+.+|.++|
T Consensus 208 e~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 208 ERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEECTTTSSSEEEEEEEC
T ss_pred EEEcCCCCCCceEEEEEEe
Confidence 9888743 488899886
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=8.1e-11 Score=101.83 Aligned_cols=128 Identities=15% Similarity=0.148 Sum_probs=81.8
Q ss_pred CeEEEecCCccHHHHHHHH----HCCCC--eEEEeec-hHHHhcCCC-------CCCeEE--EeCCCC-------CCCC-
Q 043533 151 GSLVDVGGGNVSFSRIISE----AFPGI--KCTVLDL-PHAVANLPE-------ADNLKY--IAGDML-------RFIP- 206 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~----~~P~~--~~~~~Dl-p~~~~~a~~-------~~ri~~--~~~D~~-------~~~p- 206 (301)
-+|||||||+|.++..|++ .+|+. +++++|. +.+++.+++ ..++.+ ...++. .+.+
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 3799999999998777654 46654 5789998 788877653 234443 333321 1223
Q ss_pred c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCccCCHHHH
Q 043533 207 P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEW 273 (301)
Q Consensus 207 ~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~rt~~e~ 273 (301)
. ||+|++ .+|+++++.|+| ||.++|.... +...... + ...+. ..+.. .....++..++
T Consensus 122 ~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkp---gG~l~i~~~~-~~~~~~~-l--~~~~~--~~~~~~~~~~~~~~~~~ 192 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGT---NAKMLIIVVS-GSSGWDK-L--WKKYG--SRFPQDDLCQYITSDDL 192 (280)
T ss_dssp CCEEEEEEESCGGGCSCHHHHHHHHHHTEEE---EEEEEEEEEC-TTSHHHH-H--HHHHG--GGSCCCTTSCCCCHHHH
T ss_pred CceeEEEEccceecCCCHHHHHHHHHhhCCC---CCEEEEEEec-CcchHHH-H--HHHHH--HhcCCCcccccCCHHHH
Confidence 2 999887 999999999999 8887776542 1111110 0 00111 11111 23446788999
Q ss_pred HHHHHhCCCceeEE
Q 043533 274 AKLFFDAVFSHYKI 287 (301)
Q Consensus 274 ~~ll~~aGf~~~~~ 287 (301)
.++|.+.||+....
T Consensus 193 ~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 193 TQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHCCCceEEE
Confidence 99999999986543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.09 E-value=7.4e-11 Score=97.56 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=69.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~--~D~i~~--- 213 (301)
....|||||||+|.++..+++.+|+..++++|+ +.++..|.+ -++|.++.+|+.. . +|. +|.|++
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 356899999999999999999999999999999 666666543 5789999999865 2 453 666555
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|+.+++.|+| ||.|++.
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~ 145 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK 145 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence 789999999999 8988764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.3e-11 Score=102.89 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=83.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC----------------------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADN---------------------------- 193 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~r---------------------------- 193 (301)
.++.+|||||||+|.+....+..+.. +++++|. +.+++.+++ ...
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 34679999999999887655555433 7999999 888886642 100
Q ss_pred ---eEEEeCCCCCC-------CC--cchhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch
Q 043533 194 ---LKYIAGDMLRF-------IP--PANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEH 246 (301)
Q Consensus 194 ---i~~~~~D~~~~-------~p--~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~ 246 (301)
......|..++ .+ .+|+|++ ++|+++++.||| ||.+++.+..... ...
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~-~~~- 206 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEES-WYL- 206 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCC-EEE-
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCc-ccc-
Confidence 12344566542 11 2888865 789999999999 8888877764322 111
Q ss_pred hhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 247 ELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 247 ~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
...... .....|.++++++|+++||++++..
T Consensus 207 --------~~~~~~---~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 207 --------AGEARL---TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp --------ETTEEE---ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --------cCCccc---ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 010100 1124699999999999999988654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=2.3e-11 Score=101.46 Aligned_cols=94 Identities=12% Similarity=0.220 Sum_probs=77.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP- 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p- 206 (301)
..++ +.++ +.+..+|||||||+|.++..+++.. |+.+++.+|. +++++.|++ .+++.++.+|..+..+
T Consensus 65 a~~l-~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 65 ALFM-EWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (213)
T ss_dssp HHHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHH-Hhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence 3456 6666 8888999999999999999999875 7889999999 888888875 5789999999877333
Q ss_pred -c-chhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 -P-ANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 -~-~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
. ||+|++ .+..++.+.|+| ||++++.
T Consensus 142 ~~~fD~I~~~~~~~~~p~~l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEVPETWFTQLKE---GGRVIVP 174 (213)
T ss_dssp GCCEEEEEECSBBSCCCHHHHHHEEE---EEEEEEE
T ss_pred ccchhhhhhhccHHHhHHHHHHhcCC---CcEEEEE
Confidence 2 999988 666778899999 8988773
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3e-10 Score=100.16 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=88.0
Q ss_pred HHHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----
Q 043533 122 RFNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE----- 190 (301)
Q Consensus 122 ~f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~----- 190 (301)
.|...|...++.+ +..++ ..++ +.++.+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++
T Consensus 70 d~~~~~~r~tqiiypkD~~~Il-~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~ 146 (324)
T d2b25a1 70 DYVVLMKRGTAITFPKDINMIL-SMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW 146 (324)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHH-HHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccccHHHHH-HHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh
Confidence 3556677666543 33466 6677 888999999999999999999987 79999999999 887777653
Q ss_pred ------------CCCeEEEeCCCCCC---CCc--chhHHH------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 191 ------------ADNLKYIAGDMLRF---IPP--ANAFLF------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 191 ------------~~ri~~~~~D~~~~---~p~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++++..+|+... ++. +|.|++ .+|.+++++||| ||+++++-+.+
T Consensus 147 ~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKp---GG~lv~~~P~i 215 (324)
T d2b25a1 147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH---GGVCAVYVVNI 215 (324)
T ss_dssp HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEE---EEEEEEEESSH
T ss_pred hhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccC---CCEEEEEeCCH
Confidence 47899999998652 333 898887 799999999999 89888875433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.5e-10 Score=100.80 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=66.7
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR-- 203 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~-- 203 (301)
.+. +.+. ..+..+|||||||+|.++..|+++ +.+++++|+ +++++.|++ ..+..+...|+..
T Consensus 47 ~l~-~~l~--~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T d1xvaa_ 47 WLL-GLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 121 (292)
T ss_dssp HHH-HHHH--HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHH-HHhh--hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence 344 5554 455789999999999999999987 578999999 899988764 1234556666643
Q ss_pred -CCC--c-chhHHH-------------------HHHHHHHHhcccCCCCcEEEE
Q 043533 204 -FIP--P-ANAFLF-------------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 204 -~~p--~-~D~i~~-------------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++| . +|+|++ ++|++++++|+| ||.+++
T Consensus 122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~ 172 (292)
T d1xvaa_ 122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVI 172 (292)
T ss_dssp HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEE
Confidence 122 3 776653 589999999999 776555
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.5e-10 Score=97.08 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=77.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDML 202 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~ 202 (301)
..++ +.+...+.+..+|||||||+|..+..|++. .|..+++++|. +++++.|++ ..++.++.+|..
T Consensus 64 a~~l-e~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 64 AYAL-ELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHH-HHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHH-HHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 3455 655322677789999999999999999985 68889999999 888887763 468999999988
Q ss_pred CCCC-c--chhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 203 RFIP-P--ANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 203 ~~~p-~--~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
...+ . ||+|++ .+...+.+.|+| ||++++.
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip~~l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKP---GGRLILP 180 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCCHHHHHTEEE---EEEEEEE
T ss_pred cccchhhhhhhhhhhcchhhcCHHHHhhcCC---CcEEEEE
Confidence 7433 2 999988 777888999999 8988873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=2.5e-10 Score=103.38 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=77.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEE-Ee
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKY-IA 198 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~-~~ 198 (301)
..++ +.++ +.+..+|||||||+|..+..+++.+|..+++|+|+ +.+++.|+. ...+.+ ..
T Consensus 206 ~~Il-~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 206 SDVY-QQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHH-HHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHH-HHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 4455 5555 77888999999999999999999999879999999 888887763 223343 45
Q ss_pred CCCCC-C-----CCcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 199 GDMLR-F-----IPPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 199 ~D~~~-~-----~p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
+|++. + ++.+|++++ +.|+++++.||| ||++++.+.+.+..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKV---GCKIISLKSLRSLT 339 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred echhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence 66665 2 222566554 889999999999 99999888766544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=4.8e-10 Score=98.78 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
+.++|||||||+|.++..++++.+ .+++++|..++...+.+ .++|+++.+|+.+ +.|. +|+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468999999999999998888754 38999999444333322 6889999999988 6663 898865
Q ss_pred ---------HHHHHHHHhcccCCCCcEEE
Q 043533 214 ---------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.++..+.+.|+| ||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp---~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAP---DGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence 788999999999 78765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=5.6e-10 Score=98.85 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=66.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
.+.++|||||||+|.++..++++.. .+++++|..+++..|++ .++|+++.+|+.+ ++|. +|+|++
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 3468999999999999988887653 48999999666655543 6789999999988 7764 898865
Q ss_pred ----------HHHHHHHHhcccCCCCcEEE
Q 043533 214 ----------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.++..+.+.|+| ||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence 788888999999 77654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=4.7e-10 Score=91.65 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=83.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C---
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-F--- 204 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~--- 204 (301)
..+++ +.+. ......+||++||+|.++..+++++|+.+++++|. |++++.+++ .+|+.++.++|.+ .
T Consensus 12 l~evi-~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 12 VREVI-EFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp HHHHH-HHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHH-HhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 45677 7776 67778999999999999999999999999999999 999998875 6799999998854 1
Q ss_pred --CC--cchhHHH--------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 205 --IP--PANAFLF--------------------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 205 --~p--~~D~i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
++ .+|.|++ ..|..+.+.|+| ||+++++.+...++
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s~Ed 147 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHSLED 147 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSHHHH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeeccccHHH
Confidence 22 2565543 889999999999 99999988765443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.85 E-value=4.3e-10 Score=94.04 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=74.8
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCCc---c
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRFIPP---A 208 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~~p~---~ 208 (301)
.++ +.++ +.+..+|||||||+|.++..|++.. .+++.+|. ++.++.|++ ..+++++.+|.....|+ |
T Consensus 61 ~ml-~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 61 FML-DELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHH-HHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHH-HHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhH
Confidence 356 7777 8888999999999999999998875 57999998 777776654 68999999998774443 9
Q ss_pred hhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 209 NAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 209 D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
|+|++ .+...+.+.|+| ||++++.
T Consensus 136 D~Iiv~~a~~~ip~~l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 136 DRVVVWATAPTLLCKPYEQLKE---GGIMILP 164 (224)
T ss_dssp EEEEESSBBSSCCHHHHHTEEE---EEEEEEE
T ss_pred HHHHhhcchhhhhHHHHHhcCC---CCEEEEE
Confidence 99987 777778889999 8988773
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.6e-09 Score=94.99 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=64.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
..+.++|||||||+|.++..++++.+ .+++++|..+....+.+ .++|+++.+|+.+ +.|. +|+|++
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34568999999999999999998865 48999999433322221 6889999999987 6663 998875
Q ss_pred -----------HHHHHHHHhcccCCCCcEEE
Q 043533 214 -----------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~ 233 (301)
.++....+.|+| ||+++
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~ii 139 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 139 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEe
Confidence 677777889999 78765
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.81 E-value=4.2e-10 Score=79.52 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=48.2
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------e-ecCCCeEEcChhcchhhcCC
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------V-NGQEEAYGLTAASTLLIKDK 66 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------v-e~~~~~y~~t~~s~~L~~~~ 66 (301)
+++|||||+|.+||+|++|||+++|+++..+. + +.++|.|.+|+.|+.|++|+
T Consensus 21 av~L~ifd~l~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~~s~~L~~Dh 85 (85)
T d1tw3a1 21 AATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDH 85 (85)
T ss_dssp HHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTS
T ss_pred HHHcCcHHHhccCCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecCCCeEecCHHHHHhhcCC
Confidence 47999999999999999999999999999887 1 56789999999999999875
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=8.2e-09 Score=88.14 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=86.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~--- 213 (301)
..++.+|||+|||+|.+++.++++. ..+++++|+ |..++.+++ .++|+++.+|+++-.+. +|.|+|
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 4567899999999999999999874 679999999 888887764 57899999999873333 998887
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
..|.++.+.|++ ||.+.+.+....... .....+.+.++..+.|+++.
T Consensus 184 ~~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~~----------------------~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 VRTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp SSGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred CchHHHHHHHHhhcCC---CCEEEEEeccccccc----------------------hhhHHHHHHHHHHHcCCceE
Confidence 889999999999 787766554321110 01234556788888999875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=3.9e-09 Score=87.56 Aligned_cols=93 Identities=23% Similarity=0.303 Sum_probs=75.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~- 207 (301)
..++ +.++ +.+..+|||||||+|..+..|++.. +.+++++|. +++++.+++ -+++.++.+|..+..|.
T Consensus 68 a~ml-~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 68 AIML-EIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHH-HHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHH-Hhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 4466 7777 8888999999999999999998865 356889998 888887774 58999999999875443
Q ss_pred --chhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 208 --ANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 208 --~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
||.|++ .+-..+.+.|+| ||++++.
T Consensus 144 ~pfD~Iiv~~a~~~ip~~l~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKIPEPLIEQLKI---GGKLIIP 175 (215)
T ss_dssp CCEEEEEECSBBSSCCHHHHHTEEE---EEEEEEE
T ss_pred CcceeEEeecccccCCHHHHHhcCC---CCEEEEE
Confidence 999988 555667778999 8988763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.64 E-value=5e-09 Score=87.43 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=73.7
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH------CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEe
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA------FPGIKCTVLDL-PHAVANLPE-----------ADNLKYIA 198 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~ 198 (301)
.++ ..+...+.+..+|||||||+|.++..|++. ++..+++.+|. ++.++.+++ ..++.++.
T Consensus 69 ~~l-~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 69 FAL-EYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHH-HHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHH-HHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 455 655212677899999999999999888875 45668999999 888777753 35899999
Q ss_pred CCCCCCCC---cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 199 GDMLRFIP---PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 199 ~D~~~~~p---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+|..+..+ .||.|++ .+-..+.+.|+| ||++++.
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLAS---GGRLIVP 189 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEE---EEEEEEE
T ss_pred cccccccccccceeeEEEEeechhchHHHHHhcCC---CcEEEEE
Confidence 99987433 2999988 566677899999 8988764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.57 E-value=6.7e-09 Score=81.47 Aligned_cols=84 Identities=7% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC--cchhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--FIP--PANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~~p--~~D~i~~--- 213 (301)
...+|||+|||+|.++++.+.+... +++.+|. +.+++.+++ .++++++.+|.++ +.+ .||+|++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4689999999999999999888764 9999999 888776653 5789999999865 222 2899887
Q ss_pred -------HHHHHHHH--hcccCCCCcEEEEEee
Q 043533 214 -------KILKKRRE--AIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -------~iL~~~~~--aL~p~~~gg~l~i~e~ 237 (301)
.+|..+.+ .|+| || ++++|.
T Consensus 93 y~~~~~~~~l~~i~~~~~L~~---~g-~iiiE~ 121 (152)
T d2esra1 93 YAKETIVATIEALAAKNLLSE---QV-MVVCET 121 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCEEE---EE-EEEEEE
T ss_pred hccchHHHHHHHHHHCCCcCC---Ce-EEEEEe
Confidence 66666653 4888 44 566665
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.8e-07 Score=77.91 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=54.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC----C---Cc--chh
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF----I---PP--ANA 210 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~----~---p~--~D~ 210 (301)
....++||||||+|..+..|++++|+++++++|+ +++++.|++ .+|+.+...+.... + .. ||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4457999999999999999999999999999999 899988875 68899887654332 1 22 899
Q ss_pred HHH
Q 043533 211 FLF 213 (301)
Q Consensus 211 i~~ 213 (301)
|++
T Consensus 140 ivs 142 (250)
T d2h00a1 140 CMC 142 (250)
T ss_dssp EEE
T ss_pred EEe
Confidence 988
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.45 E-value=2.2e-08 Score=87.56 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=70.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCC---CCCc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLR---FIPP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~---~~p~-~D~ 210 (301)
.+++++||.||+|.|..+..+++..|..+++++|+ |+|++.+++ .+|++++.+|.++ ..+. ||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 36678999999999999999999888889999999 999886653 5799999999876 2333 888
Q ss_pred HHH------------------HHHHHHHHhcccCCCCcEEEE
Q 043533 211 FLF------------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 211 i~~------------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
|++ ..++.+++.|+| ||.+++
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~ 193 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGM 193 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCC---CceEEE
Confidence 875 789999999999 665544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=7e-08 Score=82.50 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=54.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC----cchhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP----PANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p----~~D~i~~ 213 (301)
.+..+++|+|||+|..+..++ ++|+.+++++|. |++++.|++ .+++.+..+|++++.+ .||+|++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVs 185 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS 185 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred ccccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEE
Confidence 446789999999999999987 579999999999 888888874 5789999999988544 2788887
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=5.3e-08 Score=83.95 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=72.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i 211 (301)
.+.+++||-||||.|..+..+++..|..+++++|+ |+|++.+++ .+|++++.+|.++ ..+. ||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 45678999999999999999998878889999999 999988864 6899999999775 2334 9998
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++ ..++.+++.|+| || ++++..
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~---~G-i~v~q~ 192 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKE---DG-VLCCQG 192 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEE---EE-EEEEEE
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCC---CC-eEEEec
Confidence 86 889999999999 66 445444
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=7e-08 Score=84.88 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=69.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---Cc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I---PP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~---p~-~D~i 211 (301)
.++..+|||+|||+|.+++.+++... .+++.+|+ +.+++.+++ .++++++.+|+++. + .. ||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 35578999999999999999998754 48999999 888887764 46899999998752 1 22 8988
Q ss_pred HH--------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 212 LF--------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 212 ~~--------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++ ++++.+.+.|+| ||.|+...
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s 263 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCS 263 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence 87 688999999999 78776665
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.37 E-value=5.5e-08 Score=84.16 Aligned_cols=87 Identities=8% Similarity=0.103 Sum_probs=72.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i 211 (301)
.+++++||-||||.|..+..+++..|..+++++|+ |.|++.+++ .+|++++.+|.++ ..+. ||+|
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 36679999999999999999998878889999999 999988764 5899999999876 2333 8988
Q ss_pred HH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++ ..++.+++.|+| ||. ++...
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi-~v~q~ 204 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKE---DGV-FSAET 204 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEE---EEE-EEEEC
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCC---CcE-EEEec
Confidence 86 899999999999 664 44443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.37 E-value=5.8e-08 Score=79.12 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=52.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCc-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
+++|||+|||+|.+++.++...+. +++++|. +.+++.|++ ..+++++.+|+.+ ++. ||+|++
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~ 113 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM 113 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEe
Confidence 589999999999999988887654 8999999 888888876 6789999999864 444 898876
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=9.8e-08 Score=81.82 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=72.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i 211 (301)
.+++++||-||||.|..+..+++..|..+++++|+ |+|++.+++ .+|++++.+|.++ ..+. ||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 45678999999999999999998877789999999 999887753 6899999999876 2333 9999
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++ ..++.+++.|+| || +++.-.
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~---~G-v~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKE---DG-IFVAQT 189 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEE---EE-EEEEEC
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCC---Cc-eEEEec
Confidence 86 899999999999 66 444433
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.31 E-value=5.6e-08 Score=70.44 Aligned_cols=53 Identities=36% Similarity=0.587 Sum_probs=43.8
Q ss_pred HHHHHHhHHhc--CCCCCHHHHHHhcCCCCCC---ce----------e----ecCCCeEEcChhcchhhcCC
Q 043533 14 QGQAQLYKLIH--GRAITLSELVSALDIQPTK---TT----------V----NGQEEAYGLTAASTLLIKDK 66 (301)
Q Consensus 14 ~~~l~lF~~L~--~~p~t~~elA~~~~~~~~~---l~----------v----e~~~~~y~~t~~s~~L~~~~ 66 (301)
+++|||||+|. ++|+|++|||+++++++.. +. + ++++++|.||+.|++|++++
T Consensus 29 aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~~~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 29 AVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGS 100 (101)
T ss_dssp HHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTS
T ss_pred HHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecCCCCeEecCHHHHHhhcCC
Confidence 47999999995 4899999999999998754 32 1 35668999999999999876
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.29 E-value=1.2e-07 Score=81.92 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc--chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP--ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~--~D~ 210 (301)
.+++++||=||+|.|..+.++++..|-.+++++|+ |+|++.+++ .+|++++.+|.++ ..++ ||+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 36678999999999999999999777778999999 999888864 6899999999765 2332 999
Q ss_pred HHH---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 211 FLF---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 211 i~~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
|++ ..++.+++.|+| ||.+++.
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 194 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 194 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence 886 899999999999 6644443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.28 E-value=9.3e-08 Score=83.11 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i 211 (301)
.+++++||-||||.|..+..+++..|-.+++++|+ |.|++.+++ .+|++++.+|.++ .-+. ||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 46678999999999999999998777779999999 999887763 5899999999876 2233 8988
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++ ..++.+++.|+| || +++.-
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~---~G-i~v~q 219 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKE---DG-ILSSQ 219 (312)
T ss_dssp EECCC-------------HHHHHHHHEEE---EE-EEEEE
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCC---Cc-EEEEe
Confidence 86 889999999999 66 44443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.3e-07 Score=78.32 Aligned_cols=90 Identities=7% Similarity=0.001 Sum_probs=72.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--------CCc-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--------IPP-A 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--------~p~-~ 208 (301)
..++++||+||+|+|..+..+++.-| +.+++.+|. |+..+.|++ .++++++.||+.+. .+. |
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 56789999999999999999999876 789999999 777666653 68999999997651 123 8
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ ..+..+.+.|+| | .++|+|.++.
T Consensus 137 D~ifiD~dk~~y~~~~~~~~~lL~~---G-Gvii~Dn~l~ 172 (219)
T d2avda1 137 DVAVVDADKENCSAYYERCLQLLRP---G-GILAVLRVLW 172 (219)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEE---E-EEEEEECCSG
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhcC---C-cEEEEeCCcc
Confidence 99888 778899999999 4 5666665554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.26 E-value=1e-07 Score=81.87 Aligned_cols=86 Identities=12% Similarity=0.198 Sum_probs=69.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEeCCCCCC---CC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------------ADNLKYIAGDMLRF---IP 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------------~~ri~~~~~D~~~~---~p 206 (301)
.+++++||.||||.|..+..+++ +|..+++++|+ |.|++.+++ .+|++++.+|.++- -.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 46678999999999999999986 56679999999 999887752 57999999998651 22
Q ss_pred cchhHHH---------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 PANAFLF---------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.||+|++ ..++.+++.|+| ||. +++..
T Consensus 149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~---~Gv-~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGI-YVTQA 190 (276)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEE-EEEEE
T ss_pred CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCC---Cce-EEEec
Confidence 3898886 889999999999 664 44443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.25 E-value=9.5e-08 Score=79.00 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC---------Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI---------PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~---------p~~ 208 (301)
..++++||+||||+|..+..+++..+ +.+++.+|. ++.++.|+. .++|+++.||..+-+ ..+
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 45678999999999999999999865 689999999 788877764 578999999986522 127
Q ss_pred hhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 209 NAFLF----------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 209 D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
|+|++ ..+.++.+.|+| || ++|+|.++..
T Consensus 134 D~ifiD~~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl~~ 172 (214)
T d2cl5a1 134 DMVFLDHWKDRYLPDTLLLEKCGLLRK---GT-VLLADNVIVP 172 (214)
T ss_dssp EEEEECSCGGGHHHHHHHHHHTTCEEE---EE-EEEESCCCCC
T ss_pred ceeeecccccccccHHHHHHHhCccCC---Cc-EEEEeCcCCC
Confidence 88877 346667778999 55 7777766544
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.24 E-value=1.1e-07 Score=67.67 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=43.4
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----------e-ec---CCCeEEcChhcchhhc
Q 043533 13 FQGQAQLYKLIHGRAITLSELVSALDIQPTKTT----------V-NG---QEEAYGLTAASTLLIK 64 (301)
Q Consensus 13 ~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----------v-e~---~~~~y~~t~~s~~L~~ 64 (301)
-+++|||||+|.+||+|++|||+++|++++.+. + ++ +.+.|++|+.++.|..
T Consensus 26 ~aveL~ifd~L~~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 26 VAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLAD 91 (92)
T ss_dssp HHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGST
T ss_pred HHHHcCchHHHhCCCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeecCCCceecccHHHHhccC
Confidence 347999999999999999999999999999887 1 32 3457999999988764
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=4.1e-07 Score=73.19 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=65.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--CC-Cc-chhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR--FI-PP-ANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~--~~-p~-~D~i~~----- 213 (301)
..+|||++||+|.++++.+.+... +++.+|. +.+++.+++ ..+++++.+|+++ .. .. ||+|++
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 479999999999999999988754 8999999 777776654 5678999999876 22 22 999998
Q ss_pred -----HHHHHHHH--hcccCCCCcEEEEEeee
Q 043533 214 -----KILKKRRE--AIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 -----~iL~~~~~--aL~p~~~gg~l~i~e~~ 238 (301)
+++..+.+ .|++ +.++++|..
T Consensus 123 ~~~~~~~l~~l~~~~~L~~----~~iIiiE~~ 150 (183)
T d2fpoa1 123 RGLLEETINLLEDNGWLAD----EALIYVESE 150 (183)
T ss_dssp TTTHHHHHHHHHHTTCEEE----EEEEEEEEE
T ss_pred cchHHHHHHHHHHCCCCCC----CeEEEEEec
Confidence 66777665 4888 457777753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.19 E-value=6.3e-07 Score=73.16 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCcchhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPPANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~ 213 (301)
+.+|||+|||+|.+++.++.+.+ .+++++|+ +.+++.+++ ..+++++.+|..+.-..||+|++
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~ 115 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIM 115 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEE
T ss_pred CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEE
Confidence 57999999999999999887644 58999999 888877764 56788999998643223888776
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.17 E-value=1.2e-07 Score=83.16 Aligned_cols=84 Identities=10% Similarity=0.079 Sum_probs=67.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C---Cc-chhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---I---PP-ANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~---p~-~D~i~~ 213 (301)
...++|||++||+|.+++.+++. ..+++.+|. +.+++.+++ -++++++.+|.++- + .. ||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 34689999999999999998865 458999999 888888875 36799999998651 1 22 898885
Q ss_pred --------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++.+.+.|+| ||.|++..
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 789999999999 78666544
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=1.4e-07 Score=75.11 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=59.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC----C-CcchhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF----I-PPANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~----~-p~~D~i~~ 213 (301)
.....+|||+|||+|.++++.+.+. .+++.+|. +.+++.+++ .+++....+|.+.+ . ..||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 4567899999999999999988874 58889999 888887764 45555555554321 1 12888876
Q ss_pred ---------HHHHHHH--HhcccCCCCcEEEEEee
Q 043533 214 ---------KILKKRR--EAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---------~iL~~~~--~aL~p~~~gg~l~i~e~ 237 (301)
+++.++. ..|+| || ++++|.
T Consensus 117 DPPY~~~~~~~l~~l~~~~ll~~---~g-~ivie~ 147 (171)
T d1ws6a1 117 APPYAMDLAALFGELLASGLVEA---GG-LYVLQH 147 (171)
T ss_dssp CCCTTSCTTHHHHHHHHHTCEEE---EE-EEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCcCC---Ce-EEEEEe
Confidence 5555554 35788 55 666665
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.15 E-value=4.5e-07 Score=78.67 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=68.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC------Cc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI------PP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~------p~-~D~ 210 (301)
.....+|||+.||+|.++..+++. +.+++.+|. +.+++.|++ ..+++|+.+|+++-+ .. ||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999998876 458999999 888887774 357999999987521 22 899
Q ss_pred HHH---------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 211 FLF---------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~---------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|++ .+++.+.+.|+| ||.++++..
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEec
Confidence 887 566778888998 776666654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.06 E-value=3.7e-07 Score=79.83 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCC------CCc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRF------IPP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~------~p~-~D~ 210 (301)
....++|||+.||+|.+++.++... ..+++.+|+ +..++.+++ ..+++++.+|.++- -.. ||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4557899999999999998877653 347999999 777776653 46899999998752 123 899
Q ss_pred HHH--------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF--------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|++ ++++.+.+.|+| ||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 886 689999999999 77555533
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.04 E-value=3.6e-07 Score=76.04 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC---------C-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI---------P-P 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~---------p-~ 207 (301)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .++|+++.||+.+-+ . .
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 56789999999999999999999987 689999998 777666664 678999999986521 2 2
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
||+|++ ..+..+.+.|+| || ++|+|.++
T Consensus 137 fD~iFiDa~k~~y~~~~e~~~~ll~~---gG-iii~DNvl 172 (227)
T d1susa1 137 YDFIFVDADKDNYLNYHKRLIDLVKV---GG-VIGYDNTL 172 (227)
T ss_dssp BSEEEECSCSTTHHHHHHHHHHHBCT---TC-CEEEETTT
T ss_pred eeEEEeccchhhhHHHHHHHHhhcCC---Cc-EEEEccCC
Confidence 899998 888999999999 55 66666544
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.00 E-value=1.6e-06 Score=70.13 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=59.6
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHC----CCCeEEEeec-hHHHhcCCC----------------------------
Q 043533 148 EGLGSLVDVGGGNVS----FSRIISEAF----PGIKCTVLDL-PHAVANLPE---------------------------- 190 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~----~~~~l~~~~----P~~~~~~~Dl-p~~~~~a~~---------------------------- 190 (301)
.+.-+|+++|||+|. +++.+.+.. ..+++++.|+ +.+++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999998 444445432 2457999999 888876652
Q ss_pred ---------CCCeEEEeCCCCCC-C-C--cchhHHH-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 191 ---------ADNLKYIAGDMLRF-I-P--PANAFLF-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 191 ---------~~ri~~~~~D~~~~-~-p--~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
..++.+...+...+ . + .+|+|+| ++|++++++|+| ||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 13356666776652 2 2 2999988 999999999999 775554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.97 E-value=5.2e-06 Score=69.19 Aligned_cols=69 Identities=13% Similarity=0.304 Sum_probs=55.3
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEeCCCCC-CCCc
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP----EADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~----~~~ri~~~~~D~~~-~~p~ 207 (301)
.+..++ +..+ .....+||+||||+|.++..|++.. .+++++|+ +..++.++ ..++++++.+|+.+ +++.
T Consensus 9 i~~~iv-~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 9 NIDKIM-TNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHH-TTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHH-HhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 345567 6666 7788999999999999999999984 47999998 66666554 36899999999998 6654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.94 E-value=5e-06 Score=66.52 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=77.4
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-C-----C
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-F-----I 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~-----~ 205 (301)
..+++ +.+. ......++|..+|.|.++..++++ +.+++++|. |+++..++. .+|+.++.++|-+ . .
T Consensus 7 l~Evl-~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 7 YQEAL-DLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHH-HHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHH-HhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 45677 7766 677889999999999999999997 468999999 988887764 6899999988754 1 1
Q ss_pred --CcchhHHH--------------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 206 --PPANAFLF--------------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 206 --p~~D~i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
..+|.|++ ..|....+.|+| ||+++++.+...
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fhs~ 135 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFHSL 135 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECSHH
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecccc
Confidence 12566654 678999999999 899998887443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.94 E-value=2.5e-06 Score=71.63 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=65.8
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~ 207 (301)
.+..++ +..+ ..+..+||+||||+|.++..|++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 17 ii~kIv-~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 17 VLNQII-KQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHH-HHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHH-HhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccc
Confidence 456677 7776 7778899999999999999999984 47999999 777777765 4789999999998 7765
Q ss_pred --chhHHH--------HHHHHHHHhccc
Q 043533 208 --ANAFLF--------KILKKRREAIAS 225 (301)
Q Consensus 208 --~D~i~~--------~iL~~~~~aL~p 225 (301)
.+.++. .|+.++...-.+
T Consensus 92 ~~~~~vv~NLPY~Ist~il~~~l~~~~~ 119 (245)
T d1yuba_ 92 KQRYKIVGNIPYHLSTQIIKKVVFESRA 119 (245)
T ss_dssp SSEEEEEEECCSSSCHHHHHHHHHHCCC
T ss_pred ceeeeEeeeeehhhhHHHHHHHhhhchh
Confidence 333333 666665544333
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.94 E-value=1.3e-06 Score=70.05 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=66.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC------CC-cchhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF------IP-PANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~------~p-~~D~i~~ 213 (301)
...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|+++- .. .||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 4689999999999999999998643 7999999 777776654 46899999998651 12 2898888
Q ss_pred ----------HHHHHHHH--hcccCCCCcEEEEEeeee
Q 043533 214 ----------KILKKRRE--AIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ----------~iL~~~~~--aL~p~~~gg~l~i~e~~~ 239 (301)
.+|..+.+ .|++ +| ++|+|...
T Consensus 120 DPPY~~~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~ 153 (182)
T d2fhpa1 120 DPPYAKQEIVSQLEKMLERQLLTN---EA-VIVCETDK 153 (182)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEE---EE-EEEEEEET
T ss_pred chhhhhhHHHHHHHHHHHCCCCCC---CE-EEEEEcCC
Confidence 77787765 4888 44 77788643
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.92 E-value=7.3e-06 Score=66.99 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=62.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc-chh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP-ANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~-~D~ 210 (301)
+..++ +.+. .....+|+|.|||+|.++..+.++++. .++.++|+ +..+..++ +..++.+|++. +... +|+
T Consensus 8 ~~~m~-~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd~ 81 (223)
T d2ih2a1 8 VDFMV-SLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFDL 81 (223)
T ss_dssp HHHHH-HHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEEE
T ss_pred HHHHH-HhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccce
Confidence 34455 5555 566789999999999999999887665 57999999 55444433 34445555544 1111 443
Q ss_pred HHH----------------------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF----------------------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~----------------------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++. .++.++.+.|+| ||++.++-
T Consensus 82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~ 144 (223)
T d2ih2a1 82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVV 144 (223)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEE
Confidence 332 567888899999 89877664
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.89 E-value=3.9e-06 Score=73.30 Aligned_cols=87 Identities=9% Similarity=0.112 Sum_probs=67.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHH-----CCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC--cchhHHH-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA-----FPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP--PANAFLF- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~-----~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p--~~D~i~~- 213 (301)
....+|+|.|||+|.++..+.++ .++.+++++|+ +.++..|+. .....+..+|.+...+ .||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 44578999999999999998764 35568999999 777776653 5667788888876433 3888887
Q ss_pred ----------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+.++.+.|+| ||++.++-+
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p 244 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 244 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence 469999999999 898766543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=1.9e-05 Score=64.31 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=66.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHhcCCC---CCCeEEEeCCCCCCCC--cchhHHH------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH---AVANLPE---ADNLKYIAGDMLRFIP--PANAFLF------ 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~---~~~~a~~---~~ri~~~~~D~~~~~p--~~D~i~~------ 213 (301)
...+++|||+|.|.=++-++-.+|+++++.+|. .. .++.+.. -++++++.++..+..+ .||+|++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~~ 144 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASL 144 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSSH
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcCH
Confidence 457999999999999999999999999999998 22 2222221 4689999988876322 3999987
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++.-+...+++ +|++++.-
T Consensus 145 ~~ll~~~~~~l~~---~g~~~~~K 165 (207)
T d1jsxa_ 145 NDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp HHHHHHHTTSEEE---EEEEEEEE
T ss_pred HHHHHHHHHhcCC---CcEEEEEC
Confidence 888888888898 78877765
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.00012 Score=57.98 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=59.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CC---------C
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FI---------P 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~---------p 206 (301)
+. +.++ -+.+..+||||||+.|.++..+++. .+..+++++|+..+- .-+++.++.+|+.. .. .
T Consensus 13 I~-~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 13 IQ-QSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HH-HHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HH-HHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----ccCCceEeecccccchhhhhhhhhccC
Confidence 44 5554 2567789999999999999998876 456789999984432 23456666666653 10 1
Q ss_pred -cchhHHH----------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 -PANAFLF----------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 -~~D~i~~----------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|+|++ ..|.-+.+.|++ ||.+++=
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~K 135 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVK 135 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEEE
Confidence 1455443 666777788898 6766543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00013 Score=61.90 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=52.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
+..++ +..+ ......||+||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ ++
T Consensus 10 ~~kIv-~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 10 INSII-DKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHH-HHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHH-HHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 45566 6665 66778999999999999999999964 7888888 555554432 3689999999998 66
Q ss_pred Cc
Q 043533 206 PP 207 (301)
Q Consensus 206 p~ 207 (301)
|.
T Consensus 85 ~~ 86 (278)
T d1zq9a1 85 PF 86 (278)
T ss_dssp CC
T ss_pred hh
Confidence 65
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.25 E-value=0.00011 Score=58.46 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC----C--CCcchhHHH-
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR----F--IPPANAFLF- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~----~--~p~~D~i~~- 213 (301)
..+|||+-||||.++.+.+.+... +++.+|. +.++..+++ ...+.+...|.++ . .+.||+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 469999999999999999998744 8999999 666554442 3456777776543 1 122899988
Q ss_pred ---------HHHHHHHH--hcccCCCCcEEEEEeeeeC
Q 043533 214 ---------KILKKRRE--AIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 ---------~iL~~~~~--aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|..+.+ .|++ +.++++|....
T Consensus 123 PPY~~~~~~~~l~~l~~~~~L~~----~~liiiE~~~~ 156 (183)
T d2ifta1 123 PPFHFNLAEQAISLLCENNWLKP----NALIYVETEKD 156 (183)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred hhHhhhhHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence 77777764 5788 55788886443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=7.3e-05 Score=62.00 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=65.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHhcCCC---CCCeEEEeCCCCC-----CCCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH---AVANLPE---ADNLKYIAGDMLR-----FIPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~---~~~~a~~---~~ri~~~~~D~~~-----~~p~-~D~i~~ 213 (301)
+....+++|||+|.|.=++-|+-.+|+++++.+|. .. .+..+.. -+++.++.+...+ +..+ ||+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34568999999999999999999999999999997 22 2222221 4678887776532 2333 899997
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++.-+...+++ ||++++.-
T Consensus 148 RAva~l~~ll~~~~~~l~~---~g~~i~~K 174 (239)
T d1xdza_ 148 RAVARLSVLSELCLPLVKK---NGLFVALK 174 (239)
T ss_dssp ECCSCHHHHHHHHGGGEEE---EEEEEEEE
T ss_pred hhhhCHHHHHHHHhhhccc---CCEEEEEC
Confidence 888888899999 78777665
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.20 E-value=0.00017 Score=59.54 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHH---HhcCCC---CCCeEEEeCCCCCCC-Cc-chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHA---VANLPE---ADNLKYIAGDMLRFI-PP-ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~---~~~a~~---~~ri~~~~~D~~~~~-p~-~D~i~~----- 213 (301)
+....+|||+|||.|.++..++.+.+...+.++|+-.- .+.... .+-+++...+-.... +. +|+|++
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES 143 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCC
Confidence 56667999999999999999998877667777776211 111111 223455555333322 22 666655
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|.-+.+.|+| ||-+++ -.+-
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv-KVl~ 177 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSN---NTQFCV-KVLN 177 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE-EESC
T ss_pred CCCchhhhhhHHHHHHHHHHHccc---CCEEEE-EECC
Confidence 788888899999 786544 4443
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.09 E-value=0.00016 Score=52.29 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=38.6
Q ss_pred HHHHHHhHHhcC-C-C---CCHHHHHHhcCCC---CCC---ce----------e------ecCCC----eEEcChhcchh
Q 043533 14 QGQAQLYKLIHG-R-A---ITLSELVSALDIQ---PTK---TT----------V------NGQEE----AYGLTAASTLL 62 (301)
Q Consensus 14 ~~~l~lF~~L~~-~-p---~t~~elA~~~~~~---~~~---l~----------v------e~~~~----~y~~t~~s~~L 62 (301)
+++|||||+|+. | | +|++|||.++.++ +.. |. | +.++| .|.+||.+++|
T Consensus 26 AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltpvsk~L 105 (110)
T d1fp1d1 26 AIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYL 105 (110)
T ss_dssp HHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGG
T ss_pred HHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccCCCCCeeeEEecchhhHhh
Confidence 479999999963 3 3 7999999998863 332 22 1 11222 59999999999
Q ss_pred hcCC
Q 043533 63 IKDK 66 (301)
Q Consensus 63 ~~~~ 66 (301)
++|.
T Consensus 106 v~de 109 (110)
T d1fp1d1 106 VPDE 109 (110)
T ss_dssp STTC
T ss_pred cCCC
Confidence 9875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00014 Score=60.90 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=51.8
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR 203 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~ 203 (301)
.++.++ +..+ ..+...||+||||+|.++..|++.. .+++++|+ +..++..+. .++++++.+|+.+
T Consensus 9 ~~~~Iv-~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 9 VIDSIV-SAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHH-HHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHH-HhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence 345567 6666 6778899999999999999999875 47888998 666665433 5789999999986
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.04 E-value=0.00034 Score=57.66 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCCeEEEecCCccHHHHHHHH----HCCCCeEEEeec-hHHHhcCC-CCCCeEEEeCCCCCC-----CCc--chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISE----AFPGIKCTVLDL-PHAVANLP-EADNLKYIAGDMLRF-----IPP--ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~----~~P~~~~~~~Dl-p~~~~~a~-~~~ri~~~~~D~~~~-----~p~--~D~i~~-- 213 (301)
++++||+||++.|.-+.-++. ..++.+++++|+ +....... ..+||+++.||..++ +.. +|+|++
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 378999999999986654443 357889999998 44433332 268999999997652 222 566665
Q ss_pred -----HHHH--HHHHhcccCCCCcEEEEEeee
Q 043533 214 -----KILK--KRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 -----~iL~--~~~~aL~p~~~gg~l~i~e~~ 238 (301)
..+. +....|++ ||.++|-|.+
T Consensus 160 ~H~~~~v~~~~~~~~lLk~---GG~iIveD~i 188 (232)
T d2bm8a1 160 AHANTFNIMKWAVDHLLEE---GDYFIIEDMI 188 (232)
T ss_dssp SCSSHHHHHHHHHHHTCCT---TCEEEECSCH
T ss_pred CcchHHHHHHHHHhcccCc---CCEEEEEcCC
Confidence 2222 35578898 7766666654
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.95 E-value=0.00021 Score=51.35 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=39.4
Q ss_pred HHHHHHhHHhcC----CCCCHHHHHHhcCCC-CCC---ce-------------e---ecCCC----eEEcChhcchhhcC
Q 043533 14 QGQAQLYKLIHG----RAITLSELVSALDIQ-PTK---TT-------------V---NGQEE----AYGLTAASTLLIKD 65 (301)
Q Consensus 14 ~~~l~lF~~L~~----~p~t~~elA~~~~~~-~~~---l~-------------v---e~~~~----~y~~t~~s~~L~~~ 65 (301)
+++|||||+|+. +|+|..|||.++..+ +.. +. | ..++| +|.+||.+++|++|
T Consensus 27 AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 27 ALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp HHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHSCC
T ss_pred HHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCCCCCeeeEEecchhHHhhcCC
Confidence 479999999963 368999999999884 443 32 1 12222 69999999999987
Q ss_pred C
Q 043533 66 K 66 (301)
Q Consensus 66 ~ 66 (301)
.
T Consensus 107 e 107 (107)
T d1kyza1 107 E 107 (107)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.93 E-value=0.00021 Score=64.31 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=69.7
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-------------CCeEEEeec-hHHHhcCCC--------C
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-------------GIKCTVLDL-PHAVANLPE--------A 191 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-------------~~~~~~~Dl-p~~~~~a~~--------~ 191 (301)
++..++ +.++ .....+|+|-+||+|.++..+.++.. ...+.++|. +.+...++. .
T Consensus 150 Iv~~mv-~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~ 226 (425)
T d2okca1 150 LIQAMV-DCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT 226 (425)
T ss_dssp HHHHHH-HHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred hhHhhh-eecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence 345555 5555 45568999999999999998877532 134888998 655554431 3
Q ss_pred CCeEEEeCCCCCCCC-c-chhHHH----------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 192 DNLKYIAGDMLRFIP-P-ANAFLF----------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 192 ~ri~~~~~D~~~~~p-~-~D~i~~----------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+...+..+|.+...+ . ||+|++ ..+.++.+.|++ ||++.++=+
T Consensus 227 ~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p 299 (425)
T d2okca1 227 DRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 299 (425)
T ss_dssp SCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence 456677888887433 2 888887 589999999999 888776643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00067 Score=59.29 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=51.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-------chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP-------ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~-------~D~i~ 212 (301)
..+..+|+|+-||+|.++..|+++. -+++++|. ++.++.|+. -.+++|+.+|..+.++. +|+++
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 5567899999999999999999864 57999999 888887764 57899999998764321 56665
Q ss_pred H
Q 043533 213 F 213 (301)
Q Consensus 213 ~ 213 (301)
+
T Consensus 288 l 288 (358)
T d1uwva2 288 L 288 (358)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.00089 Score=56.77 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=63.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~-- 213 (301)
.....+|||+.++.|.=+..++....+.+++.+|. +.-+...++ .+.+.....|... . .+. ||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56678999999999999999999988889999998 333322221 2334444444432 1 223 777776
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+||+++.+.|+| ||+|+.....+
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecC
Confidence 999999999999 77666555433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.34 E-value=0.0018 Score=55.66 Aligned_cols=90 Identities=10% Similarity=0.087 Sum_probs=65.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C-CCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F-IPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~-~p~-~D~i~~-- 213 (301)
...+.+|||+.+|.|.=+..++.... +..++..|. +.-+...+. ..++.+...|... + .+. ||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999999999988754 668999998 544443332 4567777777654 2 222 777775
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++.+.++| ||+++.....+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccC
Confidence 999999999999 77666555433
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.93 E-value=0.0019 Score=56.80 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=65.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------------CCCeEEEeCCCCC---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------------ADNLKYIAGDMLR--- 203 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------------~~ri~~~~~D~~~--- 203 (301)
+..+|||..||+|..+++.++..+..+++..|+ +..++.+++ ...+.+...|+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999999998888778999999 777776653 1235666667543
Q ss_pred CCCc-chhHHH-------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 204 FIPP-ANAFLF-------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 204 ~~p~-~D~i~~-------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.... ||+|-+ ..|..+.++++. ||.|.|.-
T Consensus 125 ~~~~~fDvIDiDPfGs~~pfldsAi~a~~~---~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDPFGSPMEFLDTALRSAKR---RGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECCSSCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hhcCcCCcccCCCCCCcHHHHHHHHHHhcc---CCEEEEEe
Confidence 1334 888887 999999999998 77666654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0063 Score=52.26 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEeCCCCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP---EADNLKYIAGDMLR 203 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~---~~~ri~~~~~D~~~ 203 (301)
...+|||||.|.|.++..|+++.---++++++. +...+..+ ..+|++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 356899999999999999998732238999988 44444332 36789999999874
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.011 Score=49.83 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=48.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC--C-CC---cchhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR--F-IP---PANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~--~-~p---~~D~i~ 212 (301)
.....+|||+++|.|.-+..++.. .+..+++++|. +.-+..+++ ..++.+...|+.. + .+ .||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 566789999999999999888876 56778999998 554444432 4678888888754 1 11 267666
Q ss_pred H
Q 043533 213 F 213 (301)
Q Consensus 213 ~ 213 (301)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.0058 Score=56.05 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=63.0
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC----CC--------------CeEEEeec-hHHHhcCCC----
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF----PG--------------IKCTVLDL-PHAVANLPE---- 190 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~----P~--------------~~~~~~Dl-p~~~~~a~~---- 190 (301)
++..++ +.++ .....+|+|-+||+|.++....+.- .. ..+.++|+ +.+...++.
T Consensus 152 Iv~~mv-~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l 228 (524)
T d2ar0a1 152 LIKTII-HLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 228 (524)
T ss_dssp HHHHHH-HHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred hhHhhh-hccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence 445555 5555 4456799999999999998876531 11 25789998 655544331
Q ss_pred -------CCCeEEEeCCCCC-C---CCcchhHHH-------------------------HHHHHHHHhcccCCCCcEEEE
Q 043533 191 -------ADNLKYIAGDMLR-F---IPPANAFLF-------------------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~---~p~~D~i~~-------------------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
...-.+..+|.+. + .+.||+|+. ..+.++.+.|++ ||++.+
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~ai 305 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAV 305 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEE
Confidence 1122344455554 2 223777776 588999999999 898777
Q ss_pred Eee
Q 043533 235 IDI 237 (301)
Q Consensus 235 ~e~ 237 (301)
+=+
T Consensus 306 IlP 308 (524)
T d2ar0a1 306 VVP 308 (524)
T ss_dssp EEE
T ss_pred EEe
Confidence 643
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.46 E-value=0.019 Score=48.58 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=60.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCCCc------ch---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP---------EADNLKYIAGDMLRFIPP------AN--- 209 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~---------~~~ri~~~~~D~~~~~p~------~D--- 209 (301)
.+...||.+|||.=.....+ ...++++++=+|+|+|++.-+ ...+..++..|+..++++ +|
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678999999999988877 346788999999999887322 245677888887643221 12
Q ss_pred -------hHHH--------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 210 -------AFLF--------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 210 -------~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++ ++|+.+.+...| |+ .+++|...
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS-~l~~d~~~ 207 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GS-RIAVETSP 207 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TC-EEEEECCC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CC-EEEEEecc
Confidence 1111 999999999888 55 55666543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.96 E-value=0.31 Score=41.82 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCeEEEecCCccHHH-------HH-HHHH--------CCCCeEEEeechH-----HHhcCCC---CC-C--eEEEeCCC
Q 043533 149 GLGSLVDVGGGNVSFS-------RI-ISEA--------FPGIKCTVLDLPH-----AVANLPE---AD-N--LKYIAGDM 201 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~-------~~-l~~~--------~P~~~~~~~Dlp~-----~~~~a~~---~~-r--i~~~~~D~ 201 (301)
+.-+|.|+||.+|..+ +. +.++ -|+.++..-|+|. +...... .. . +.-++|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 3457999999999876 33 3221 3577888889963 3443332 11 1 34455666
Q ss_pred CCC-CCc--chhHHH--------------------------------------------HHHHHHHHhcccCCCCcEEEE
Q 043533 202 LRF-IPP--ANAFLF--------------------------------------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 202 ~~~-~p~--~D~i~~--------------------------------------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
... +|. .+++++ .+|+.=++-|.| ||++++
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mvl 207 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEE
Confidence 652 342 232222 788888899999 999999
Q ss_pred EeeeeCCCccchh-----hhh-hhhhhchhhccc----------cCCccCCHHHHHHHHHhCC-CceeEEE
Q 043533 235 IDIVINAEEEEHE-----LTE-TKFLFDIVMSVN----------ATGKERTESEWAKLFFDAV-FSHYKIT 288 (301)
Q Consensus 235 ~e~~~~~~~~~~~-----~~~-~~~~~d~~~~~~----------~~g~~rt~~e~~~ll~~aG-f~~~~~~ 288 (301)
.-...++...... +.. ...+.|+.-... .--.-+|.+|+++.+++.| |++.++.
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence 8776665322110 000 011222211100 1112479999999999876 5555543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.0082 Score=46.17 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=56.6
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCC---CCCCCc-chhHHH------
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDM---LRFIPP-ANAFLF------ 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~---~~~~p~-~D~i~~------ 213 (301)
.....+|+-+|+| .|.++..+++.. +++++++|. ++-++.+++ +....+...+- .+.... +|+++-
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6777899999987 677888888765 789999997 666666654 21222221111 111222 565443
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+..+.+.++| +|+++++-.
T Consensus 104 ~~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1piwa2 104 DIDFNIMPKAMKV---GGRIVSISI 125 (168)
T ss_dssp TCCTTTGGGGEEE---EEEEEECCC
T ss_pred cchHHHHHHHhhc---cceEEEecc
Confidence 246778899999 899988864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.86 E-value=0.034 Score=43.01 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=59.7
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCC--CCC--------CCCc-chhHH
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGD--MLR--------FIPP-ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D--~~~--------~~p~-~D~i~ 212 (301)
.....+||-+|+| .|.++..+++..---+++++|. ++-.+.+++ +....+...+ ..+ .-+. +|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5567899999887 4778888998864337999998 666666654 2222222211 100 0122 66655
Q ss_pred H-----HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 213 F-----KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 213 ~-----~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
- ..++.+.+.|++ ||+++++-...+
T Consensus 106 d~vG~~~~~~~a~~~l~~---~G~iv~~G~~~~ 135 (182)
T d1vj0a2 106 EATGDSRALLEGSELLRR---GGFYSVAGVAVP 135 (182)
T ss_dssp ECSSCTTHHHHHHHHEEE---EEEEEECCCCSC
T ss_pred ecCCchhHHHHHHHHhcC---CCEEEEEeecCC
Confidence 3 788999999999 899988875433
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.84 E-value=0.22 Score=38.82 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CC---------Cc-chhHHH
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FI---------PP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~---------p~-~D~i~~ 213 (301)
.....+||.+|||. |.++..+++.....+++++|. ++-++.|++..- ..+. |..+ ++ +. +|+++-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-~~~~-~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-EIAD-LSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-EEEE-TTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-cEEE-eCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 67788999999988 667888888887779999998 777776664111 1111 1111 00 10 232221
Q ss_pred --------------------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 --------------------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 --------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
..|+.+.++++| ||++.++-...++
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~~ 145 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVTE 145 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCSC
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCCC
Confidence 689999999999 9999988764443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.81 E-value=0.23 Score=37.38 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=59.2
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC-----------CCc-chhH
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRF-----------IPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~-----------~p~-~D~i 211 (301)
.....+|+-+|+| .|.++..+++.. +.+++++|. ++-++.+++ .....+..-+..++ .+. +|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667889999977 677888888776 579999998 666666664 22333322111111 122 5665
Q ss_pred HH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+- ..+..+.+.++| +|+++++-.
T Consensus 103 id~~g~~~~~~~a~~~~~~---~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCSGNEKCITIGINITRT---GGTLMLVGM 130 (170)
T ss_dssp EECSCCHHHHHHHHHHSCT---TCEEEECSC
T ss_pred eecCCChHHHHHHHHHHhc---CCceEEEec
Confidence 53 789999999999 899998874
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.27 Score=41.66 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC---------------------------CCCCeEEEeCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP---------------------------EADNLKYIAGDML 202 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~---------------------------~~~ri~~~~~D~~ 202 (301)
...||-+|||.=.....+...+|+++++=+|+|++++.=+ ..++..++..|+.
T Consensus 97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~ 176 (328)
T d1rjda_ 97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 176 (328)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred CcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCCC
Confidence 4589999999999999999999999999999998876211 0468889999987
Q ss_pred C-C-------------CCc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 203 R-F-------------IPP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 203 ~-~-------------~p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
+ . .|. +.++++ ++|+.+.+..+. +.+++.|.+.+..
T Consensus 177 d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~ 237 (328)
T d1rjda_ 177 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQ 237 (328)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCS
T ss_pred CcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCC
Confidence 5 1 121 223333 888888888765 8899999986543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.97 E-value=0.05 Score=41.36 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=49.0
Q ss_pred eEEEecCCc-c-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH--------HHHHHH
Q 043533 152 SLVDVGGGN-V-SFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPPANAFLF--------KILKKR 219 (301)
Q Consensus 152 ~vlDvGgG~-G-~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~--------~iL~~~ 219 (301)
+|+=||||. | .++..|.+.++..+++++|. ++.++.+++...+....-+... ....+|+|++ .++.++
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~l 82 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKL 82 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence 577789985 3 35667777888889999999 7888777653333322223222 1223676665 778888
Q ss_pred HHhccc
Q 043533 220 REAIAS 225 (301)
Q Consensus 220 ~~aL~p 225 (301)
...+++
T Consensus 83 ~~~~~~ 88 (171)
T d2g5ca2 83 SYILSE 88 (171)
T ss_dssp HHHSCT
T ss_pred hccccc
Confidence 888887
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.018 Score=44.30 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=57.1
Q ss_pred ccCCCeEEEecC--CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCCCCC-----CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGG--GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA---GDMLRF-----IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGg--G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~---~D~~~~-----~p~-~D~i~~- 213 (301)
+.+..+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++. .|+.+. -+. +|+++-
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 667789999984 6788899999887 678888876 65555555411111121 122111 122 566554
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..+.+..++|+| +|+++.+-
T Consensus 105 ~g~~~~~~~~~~l~~---~G~iv~~G 127 (174)
T d1yb5a2 105 LANVNLSKDLSLLSH---GGRVIVVG 127 (174)
T ss_dssp CHHHHHHHHHHHEEE---EEEEEECC
T ss_pred ccHHHHHHHHhccCC---CCEEEEEe
Confidence 889999999999 89999875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.52 E-value=0.34 Score=36.91 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=59.4
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCCC-CC-----CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA---GDML-RF-----IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~---~D~~-~~-----~p~-~D~i~~- 213 (301)
.+...+|+=+|||. |.++..+++..-..++++.|. ++-.+.+++..--.++. .|-. .. .+. +|+++-
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66778999999987 889999999886667889998 66666666522222221 1110 00 011 455543
Q ss_pred ----HHHHHHHHhcccCCCC-cEEEEEee
Q 043533 214 ----KILKKRREAIASNGER-GKVIIIDI 237 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~g-g~l~i~e~ 237 (301)
..+.+..+.+++ | |+++++-.
T Consensus 106 ~G~~~~~~~a~~~~~~---g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AGTAQTLKAAVDCTVL---GWGSCTVVGA 131 (174)
T ss_dssp SCCHHHHHHHHHTBCT---TTCEEEECCC
T ss_pred cccchHHHHHHHHhhc---CCeEEEecCC
Confidence 889999999999 6 88888764
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.71 E-value=0.037 Score=45.38 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=51.2
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------C--------CCCeEEEeCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP-------E--------ADNLKYIAGD 200 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-------~--------~~ri~~~~~D 200 (301)
.+. +++........+|||.=||.|.-+..++.. +.+++.++. |.+....+ . ..|++++.+|
T Consensus 77 ~l~-kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVA-KAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHH-HHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHH-HHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 355 666511233458999999999999999998 478999998 44332222 1 2489999999
Q ss_pred CCC---CCCc-chhHHH
Q 043533 201 MLR---FIPP-ANAFLF 213 (301)
Q Consensus 201 ~~~---~~p~-~D~i~~ 213 (301)
..+ .... +|+|++
T Consensus 154 s~~~L~~~~~~~DvIYl 170 (250)
T d2oyra1 154 SLTALTDITPRPQVVYL 170 (250)
T ss_dssp HHHHSTTCSSCCSEEEE
T ss_pred HHHHHhccCCCCCEEEE
Confidence 654 2323 888887
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.058 Score=41.02 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=56.2
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCC--CC-CCcchhHHH-----HH
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDML--RF-IPPANAFLF-----KI 215 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~--~~-~p~~D~i~~-----~i 215 (301)
.+...+|+=+|+| .|.++..+++.. +.+.+++|. ++-.+.+++ +....+...+-. .. ...+|+++- ..
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~ 106 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 106 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh
Confidence 6777888888875 477888899886 678888887 554555544 222222111110 01 112776654 67
Q ss_pred HHHHHHhcccCCCCcEEEEEee
Q 043533 216 LKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++...+.+++ +|+++++-.
T Consensus 107 ~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1uufa2 107 LDDFTTLLKR---DGTMTLVGA 125 (168)
T ss_dssp HHHHHTTEEE---EEEEEECCC
T ss_pred HHHHHHHHhc---CCEEEEecc
Confidence 8889999999 899998764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.07 E-value=0.11 Score=39.31 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=58.2
Q ss_pred ccCCCeEEEecC--CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCC---CCCC-----CCc-chhHHH
Q 043533 147 FEGLGSLVDVGG--GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGD---MLRF-----IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGg--G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D---~~~~-----~p~-~D~i~~ 213 (301)
.....+|+=+|| |.|.++..+++.....++++.|. ++-.+.+++ +... ++..+ +.+. .+. +|+++-
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-VINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-eeccCCcCHHHHHHHHhhcccchhhhc
Confidence 667789999995 46777888888876678999997 655555553 2122 22221 1111 123 666554
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..++.+.+.++| ||+++++-.
T Consensus 104 ~~g~~~~~~~a~~~l~~---~G~iv~~G~ 129 (170)
T d1jvba2 104 LNNSEKTLSVYPKALAK---QGKYVMVGL 129 (170)
T ss_dssp SCCCHHHHTTGGGGEEE---EEEEEECCS
T ss_pred ccccchHHHhhhhhccc---CCEEEEecc
Confidence 788999999999 899988864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.49 E-value=0.19 Score=38.22 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=57.5
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC---CCCCC----CCc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG---DMLRF----IPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~---D~~~~----~p~-~D~i~~--- 213 (301)
.+...+|+=+|+|. |.++..+++.....++++.|. ++-++.+++..-..++.. |+.+. .+. +|+++-
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 66778888899864 446777777776667888887 666666665211122222 11110 122 676663
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..++.+.+.++| +|+++++-.
T Consensus 106 ~~~~~~~~~~~~~~---~G~i~~~G~ 128 (174)
T d1f8fa2 106 SPEILKQGVDALGI---LGKIAVVGA 128 (174)
T ss_dssp CHHHHHHHHHTEEE---EEEEEECCC
T ss_pred cHHHHHHHHhcccC---ceEEEEEee
Confidence 889999999999 899988754
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=89.40 E-value=0.4 Score=41.13 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=36.2
Q ss_pred CchHHHHHHHHhhcccccchHHHHHhhhhh-cccCCCeEEEecCCccHHHHHHHHHC-------CCCeEEEeec
Q 043533 116 NPAINQRFNEAMASDSEIMTSFVVKSECKQ-IFEGLGSLVDVGGGNVSFSRIISEAF-------PGIKCTVLDL 181 (301)
Q Consensus 116 ~~~~~~~f~~am~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~-------P~~~~~~~Dl 181 (301)
.|+....|.+..+. +++ ..+.. +.++.-.||++|+|+|.++..+++.. -.+++..++.
T Consensus 53 sp~is~~Fg~~ia~-------~~~-~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 53 SPEISQMFGELLGL-------WSA-SVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp HHHHCHHHHHHHHH-------HHH-HHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCchHHHHHHHHHH-------HHH-HHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 45566666666542 233 32221 13345689999999999999887652 2345777777
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.96 Score=33.77 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=58.1
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC--CCCC-------CCCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAG--DMLR-------FIPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~--D~~~-------~~p~-~D~i~~ 213 (301)
.....+|+=+|+|. |.++..+++....-+++++|. ++-++.+++ +........ |..+ ..+. +|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56678899999865 556666777765448999998 777776665 222111111 1100 0122 566554
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
..++.+.+.+++ ||+++++-...
T Consensus 104 ~~G~~~~~~~a~~~~~~---gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTGAEASIQAGIYATRS---GGTLVLVGLGS 131 (171)
T ss_dssp CSCCHHHHHHHHHHSCT---TCEEEECSCCC
T ss_pred ccCCchhHHHHHHHhcC---CCEEEEEecCC
Confidence 789999999999 99999887543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.74 E-value=0.021 Score=44.15 Aligned_cols=89 Identities=11% Similarity=-0.020 Sum_probs=59.1
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC--CCCC---C--CCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAG--DMLR---F--IPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~--D~~~---~--~p~-~D~i~~-- 213 (301)
.+...+|+=+|||. |.++..+++..--.+++++|. ++-.+.+++ +....+... |+.+ . -.. +|+++-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66678888899886 888888888764447999998 666666664 211111111 1111 0 112 676654
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
..+.++.+.++| +|+++++-..
T Consensus 105 g~~~~~~~a~~~~~~---~G~iv~~G~~ 129 (174)
T d1jqba2 105 GGSETLSQAVKMVKP---GGIISNINYH 129 (174)
T ss_dssp SCTTHHHHHHHHEEE---EEEEEECCCC
T ss_pred CCHHHHHHHHHHHhc---CCEEEEEeec
Confidence 788999999999 8999887653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.59 E-value=0.36 Score=36.80 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC--------CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRF--------IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~--------~p~-~D~i~~- 213 (301)
.+...+|+=+|+|. |.++..+++..-..+++++|. ++-++.|++ +....+-.-|.-.. .+. +|+++-
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 66678899999764 556677777776678999998 888887776 22222221121100 112 554443
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHH
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 278 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~ 278 (301)
..+++....+.+ .+|+++++-......... +.....+....+.-...|.-++..++.++++
T Consensus 107 ~g~~~~~~~a~~~~~~--~~G~~v~vG~~~~~~~~~--~~~~~~~~~~~i~Gs~~G~~~~~~dip~li~ 171 (176)
T d1d1ta2 107 IGHLETMIDALASCHM--NYGTSVVVGVPPSAKMLT--YDPMLLFTGRTWKGCVFGGLKSRDDVPKLVT 171 (176)
T ss_dssp SCCHHHHHHHHTTSCT--TTCEEEECSCCCTTCCEE--ECTHHHHTTCEEEECSGGGCCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhc--CCeEEEEEEccccccccC--CCHHHHhCCCEEEEEEEeCCCcHHHHHHHHH
Confidence 667777777765 058888876543332221 1001111222222223344455667766655
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.07 E-value=0.1 Score=34.14 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHhHHhc--CCCCCHHHHHHhcCCCCCCce-----------ee-cCCCeEEcChhc
Q 043533 16 QAQLYKLIH--GRAITLSELVSALDIQPTKTT-----------VN-GQEEAYGLTAAS 59 (301)
Q Consensus 16 ~l~lF~~L~--~~p~t~~elA~~~~~~~~~l~-----------ve-~~~~~y~~t~~s 59 (301)
-+.|.+.+. .+|+|++|||+++|++...+. ++ ..+++|.+++..
T Consensus 7 ~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l 64 (75)
T d1mkma1 7 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCEeecHHH
Confidence 356677775 368999999999999988776 13 346889998754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=85.27 E-value=1.2 Score=33.41 Aligned_cols=89 Identities=11% Similarity=-0.047 Sum_probs=54.5
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-CCCCCC--------CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA-GDMLRF--------IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~-~D~~~~--------~p~-~D~i~~- 213 (301)
.+...+||=+|+| .|..+..+++..-..++++.|. ++-.+.+++.....++. .+--+. -+. +|+++-
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 6677889999774 4557777888887789999998 66565555422222221 111111 111 565554
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
..++.+...+++ +|+.+++-..
T Consensus 106 ~G~~~~~~~a~~~~~~---~~g~~~~~~~ 131 (176)
T d2jhfa2 106 IGRLDTMVTALSCCQE---AYGVSVIVGV 131 (176)
T ss_dssp SCCHHHHHHHHHHBCT---TTCEEEECSC
T ss_pred CCchhHHHHHHHHHhc---CCcceEEecC
Confidence 778888889988 6555544433
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.78 E-value=0.79 Score=34.29 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=54.5
Q ss_pred ccCCCeEEEecC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCC--------CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGG-GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG-DMLRF--------IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGg-G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~-D~~~~--------~p~-~D~i~~- 213 (301)
.+...+||=+|| |.|.++..+++..-..++++.|. ++-.+.+++-.--.++.. +-.++ .+. +|+++-
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 666788888776 45667788888876668888887 566666664111112211 11001 122 566664
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..++.+...+++ ||+++++-.
T Consensus 106 ~G~~~~~~~~~~~~~~---g~~~~~v~~ 130 (176)
T d2fzwa2 106 IGNVKVMRAALEACHK---GWGVSVVVG 130 (176)
T ss_dssp SCCHHHHHHHHHTBCT---TTCEEEECS
T ss_pred CCCHHHHHHHHHhhcC---CceeEEEEe
Confidence 888899999998 777665543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.68 E-value=0.33 Score=36.33 Aligned_cols=87 Identities=8% Similarity=0.047 Sum_probs=54.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRF-------IPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~-------~p~-~D~i~~--- 213 (301)
.....+|+=+|+|. |.++..+++.. +.+++++|. ++-++.+++..--.++..+-.+. .+. .++|..
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc
Confidence 66677888888754 56677777776 589999998 66666666522112222111110 011 222222
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+..+.+.|+| ||+++++-.
T Consensus 104 ~~~~~~~~~~l~~---~G~iv~~G~ 125 (166)
T d1llua2 104 NSAFGQAIGMARR---GGTIALVGL 125 (166)
T ss_dssp HHHHHHHHTTEEE---EEEEEECCC
T ss_pred chHHHHHHHHhcC---CcEEEEEEe
Confidence 888999999999 899988753
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=84.39 E-value=0.25 Score=37.04 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=43.9
Q ss_pred eEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH--------HHHHHHH
Q 043533 152 SLVDVGGG--NVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPPANAFLF--------KILKKRR 220 (301)
Q Consensus 152 ~vlDvGgG--~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~--------~iL~~~~ 220 (301)
+|.=||+| -+.++..|.++ +.+++++|. ++.++.+.+...+.... +..+....+|+|++ .+++++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIilavp~~~~~~vl~~l~ 78 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLCTPIQLILPTLEKLI 78 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEECSCHHHHHHHHHHHG
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceee-eecccccccccccccCcHhhhhhhhhhhh
Confidence 35557776 33455566555 467999999 77777666433232222 22233445788776 8888888
Q ss_pred Hhccc
Q 043533 221 EAIAS 225 (301)
Q Consensus 221 ~aL~p 225 (301)
..+++
T Consensus 79 ~~l~~ 83 (165)
T d2f1ka2 79 PHLSP 83 (165)
T ss_dssp GGSCT
T ss_pred hhccc
Confidence 88887
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.01 E-value=1.6 Score=32.83 Aligned_cols=92 Identities=7% Similarity=-0.057 Sum_probs=57.3
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE---eCCCCC-C-----CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYI---AGDMLR-F-----IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~---~~D~~~-~-----~p~-~D~i~~- 213 (301)
.....+|+=+|+|. |..+..+++..-..+++++|. ++-++.+++..--.++ ..|... . -+. +|+++-
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 56678999999865 456666777776678999998 6667766652222222 122110 0 111 455443
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
..+.+....+++ ++|+++++-...+
T Consensus 105 ~g~~~~~~~~~~~~~~--~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 105 AGRIETMMNALQSTYC--GSGVTVVLGLASP 133 (174)
T ss_dssp SCCHHHHHHHHHTBCT--TTCEEEECCCCCT
T ss_pred CCCchHHHHHHHHHHH--hcCceEEEEEecC
Confidence 788888888866 1588888775443
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| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.01 E-value=1.1 Score=33.04 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=52.1
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-C--CCCCC----CCc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNV-SFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA-G--DMLRF----IPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G-~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~-~--D~~~~----~p~-~D~i~~--- 213 (301)
.....+||=.|+|.- ..+..+++. .+.+++++|. ++-++.+++..--.++. . |+.+. .+. .|+|..
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 103 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS 103 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC
Confidence 566778888887654 455556665 4668999997 66555555411111111 1 11100 112 233322
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+..+.++|+| +|+++++-.
T Consensus 104 ~~~~~~a~~~l~~---~G~i~~~g~ 125 (168)
T d1rjwa2 104 KPAFQSAYNSIRR---GGACVLVGL 125 (168)
T ss_dssp HHHHHHHHHHEEE---EEEEEECCC
T ss_pred HHHHHHHHHHhcc---CCceEeccc
Confidence 889999999999 899888764
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| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.80 E-value=0.57 Score=35.73 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=58.0
Q ss_pred ccCCCeEEEec--CCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C----CCc-chhHHH---
Q 043533 147 FEGLGSLVDVG--GGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-F----IPP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvG--gG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~----~p~-~D~i~~--- 213 (301)
.+...+||=.| ||.|.+++.|++.. ++++++... ++-.+.+++ +....+-.-+.+. . -+. +|+|+=
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 45567788877 57778999999886 788877765 444444433 1111111111111 1 122 776554
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
..+.+..+.|+| ||+++++-.......
T Consensus 108 g~~~~~~l~~l~~---~Griv~~G~~~g~~~ 135 (176)
T d1xa0a2 108 GRTLATVLSRMRY---GGAVAVSGLTGGAEV 135 (176)
T ss_dssp TTTHHHHHHTEEE---EEEEEECSCCSSSCC
T ss_pred chhHHHHHHHhCC---CceEEEeecccCccc
Confidence 889999999999 899999887655443
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