Citrus Sinensis ID: 043542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
SSFTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEcccccccccccccccccccHHHccccEEEEccHHHHHHHHcccccEEEEEcccccccccccHHHccccccccccc
Coil and Loop (DISEMBL)
ssfthartasqqgsgkVGKWFINFLSTqkwenplmgwtstgdpyanvgeaglcfDSEAAARAFAEKhgweytvrkfhapllkpksygdnfkwkgppkdd
Flexible Loop (DISEMBL)
ssfthartasqqgsgkvgKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKfhapllkpksygdnfkwkgppkdd
Low Complexity Region (SEG)
SSFTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD
Disordered region (IsUnstruct)
****************VGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNF*********
Disordered Region (DISOPRED)
SSFTHART******GK*GKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPL*KPKSYGD****K******
Disordered Region (DISEMBL)
**************GKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD
Disordered Region (DISPRO)
***************KVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SSFTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.959	0.616	0.715	3e-36
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	no	0.878	0.497	0.477	1e-16
Q02375	175	NADH dehydrogenase [ubiqu	yes	no	0.878	0.497	0.466	2e-16
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.878	0.497	0.455	4e-16
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.878	0.497	0.455	6e-16
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.878	0.497	0.455	6e-16
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.878	0.497	0.444	6e-16
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.878	0.497	0.444	6e-16
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.878	0.497	0.433	4e-15
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.878	0.497	0.466	7e-14

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/95 (71%), Positives = 82/95 (86%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTA+Q GSGK+GKW INF+ST KWENPLMGWTSTGDPYANVG++ L FDSE AA++
Sbjct: 57  YSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKS 116

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPK 97
           FAE+HGW+Y V+K + PLLK KSY DNFKWKG P+
Sbjct: 117 FAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQ 151

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAVA 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEKHGW Y V     P  K KSYG NF W
Sbjct: 137 FAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNL---VLTFSTKEDAVA 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y V +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW+ST DP +N+    L F ++  A A
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNL---VLTFSTKEDAVA 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW + V +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSFDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVS 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y V +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVS 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y V +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVS 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y + +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A +
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVS 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y + +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L   ++  A +
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTXSTKEDAVS 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y + +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct: 80  FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAIA 136

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
           FAEK+GW Y V +   P  K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
226502326	157	LOC100281028 [Zea mays] gi|195611248|gb|	0.979	0.617	0.793	4e-41
326492291	158	predicted protein [Hordeum vulgare subsp	0.979	0.613	0.793	6e-41
242050704	157	hypothetical protein SORBIDRAFT_02g03778	0.979	0.617	0.793	8e-41
357122195	158	PREDICTED: NADH dehydrogenase [ubiquinon	0.979	0.613	0.793	1e-40
195642452	157	NADH-ubiquinone oxidoreductase 18 kDa su	0.979	0.617	0.793	2e-40
212722756	157	NADH-ubiquinone oxidoreductase subunit [	0.979	0.617	0.793	2e-40
223974149	115	unknown [Zea mays]	0.979	0.843	0.793	2e-40
225438227	154	PREDICTED: NADH dehydrogenase [ubiquinon	0.979	0.629	0.804	4e-40
115473055	159	Os07g0585800 [Oryza sativa Japonica Grou	0.979	0.610	0.783	6e-40
296088915	114	unnamed protein product [Vitis vinifera]	0.979	0.850	0.804	6e-40

>gi|226502326|ref|NP_001147419.1| LOC100281028 [Zea mays] gi|195611248|gb|ACG27454.1| NADH-ubiquinone oxidoreductase 18 kDa subunit [Zea mays] gi|414887349|tpg|DAA63363.1| TPA: NADH-ubiquinone oxidoreductase subunit [Zea mays]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INFLSTQKWENPLMGWTSTGDPYANVGEAGL FDS  +A+A
Sbjct: 59  YSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYANVGEAGLTFDSAESAKA 118

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW Y VRK HAPLL+PK+Y +NFKW+GPPK +
Sbjct: 119 FAEKHGWNYVVRKRHAPLLRPKAYAENFKWRGPPKAE 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492291|dbj|BAK01929.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INF+STQKWENPLMGWTSTGDPYANVGEAGL FDS  +A+A
Sbjct: 59  YSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSAESAKA 118

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FA+KHGWEY VRK H PLLKPK+Y +NFKWKGPPK +
Sbjct: 119 FADKHGWEYVVRKRHTPLLKPKTYAENFKWKGPPKTE 155

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050704|ref|XP_002463096.1| hypothetical protein SORBIDRAFT_02g037780 [Sorghum bicolor] gi|241926473|gb|EER99617.1| hypothetical protein SORBIDRAFT_02g037780 [Sorghum bicolor]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 86/97 (88%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INFLSTQKWENPLMGWTSTGDPYANVGEAGL FDS  +A+A
Sbjct: 59  YSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYANVGEAGLTFDSAESAKA 118

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW Y VRK H PLLKPK+Y +NFKW+GPPK +
Sbjct: 119 FAEKHGWNYVVRKRHTPLLKPKAYAENFKWRGPPKAE 155

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122195|ref|XP_003562801.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Brachypodium distachyon]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INF+STQKWENPLMGWTSTGDPYANVGEAGL FDS  +A+A
Sbjct: 59  YSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKA 118

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW+Y VRK H PLLKPK+Y +NFKWKGPPK +
Sbjct: 119 FAEKHGWDYVVRKRHTPLLKPKTYAENFKWKGPPKTE 155

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

>gi|195642452|gb|ACG40694.1| NADH-ubiquinone oxidoreductase 18 kDa subunit [Zea mays]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 86/97 (88%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INFLSTQKWENPLMGWTSTGDPYANVGEAGL F+S  +A+A
Sbjct: 59  YSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYANVGEAGLTFNSAESAKA 118

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW Y VRK H PLLKPK+Y +NFKWKGPPK +
Sbjct: 119 FAEKHGWNYVVRKRHTPLLKPKAYAENFKWKGPPKAE 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722756|ref|NP_001132398.1| NADH-ubiquinone oxidoreductase subunit [Zea mays] gi|194694272|gb|ACF81220.1| unknown [Zea mays] gi|195608562|gb|ACG26111.1| NADH-ubiquinone oxidoreductase 18 kDa subunit [Zea mays] gi|414590683|tpg|DAA41254.1| TPA: NADH-ubiquinone oxidoreductase subunit [Zea mays]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 86/97 (88%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INFLSTQKWENPLMGWTSTGDPYANVGEAGL F+S  +A+A
Sbjct: 59  YSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYANVGEAGLTFNSAESAKA 118

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW Y VRK H PLLKPK+Y +NFKWKGPPK +
Sbjct: 119 FAEKHGWNYVVRKRHTPLLKPKAYAENFKWKGPPKAE 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223974149|gb|ACN31262.1| unknown [Zea mays]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INFLSTQKWENPLMGWTSTGDPYANVGEAGL FDS  +A+A
Sbjct: 17  YSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYANVGEAGLTFDSAESAKA 76

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW Y VRK HAPLL+PK+Y +NFKW+GPPK +
Sbjct: 77  FAEKHGWNYVVRKRHAPLLRPKAYAENFKWRGPPKAE 113

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438227|ref|XP_002265704.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Vitis vinifera] gi|147858131|emb|CAN83933.1| hypothetical protein VITISV_035766 [Vitis vinifera]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F+ ARTA+QQGSGKVG+W INF+STQKWENPLMGWTSTGDPYANVG+AGL FDSE AA+A
Sbjct: 57  FSPARTATQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLGFDSEEAAKA 116

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGWEYTV+K   PLLK K+Y DNFKWKGPPK +
Sbjct: 117 FAEKHGWEYTVKKRQTPLLKTKAYADNFKWKGPPKTE 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|115473055|ref|NP_001060126.1| Os07g0585800 [Oryza sativa Japonica Group] gi|50509945|dbj|BAD30267.1| NADH-ubiquinone oxidoreductase-related-like protein [Oryza sativa Japonica Group] gi|113611662|dbj|BAF22040.1| Os07g0585800 [Oryza sativa Japonica Group] gi|218199922|gb|EEC82349.1| hypothetical protein OsI_26657 [Oryza sativa Indica Group] gi|222637356|gb|EEE67488.1| hypothetical protein OsJ_24916 [Oryza sativa Japonica Group]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 86/97 (88%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           ++ ARTASQQGSGKVG+W INF+STQKWENPLMGWTSTGDPYANVGEAGL FDS  +A+A
Sbjct: 61  YSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKA 120

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGW+Y VRK H PLLK KSY +NFKW+GPPK +
Sbjct: 121 FAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAE 157

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088915|emb|CBI38470.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (423), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 87/97 (89%)

Query: 3   FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
           F+ ARTA+QQGSGKVG+W INF+STQKWENPLMGWTSTGDPYANVG+AGL FDSE AA+A
Sbjct: 17  FSPARTATQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLGFDSEEAAKA 76

Query: 63  FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
           FAEKHGWEYTV+K   PLLK K+Y DNFKWKGPPK +
Sbjct: 77  FAEKHGWEYTVKKRQTPLLKTKAYADNFKWKGPPKTE 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.979	0.629	0.701	1.7e-36
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.878	0.75	0.477	9.5e-18
RGD|1594380	175	Ndufs4 "NADH dehydrogenase (ub	0.878	0.497	0.477	9.5e-18
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.878	0.517	0.466	9.5e-18
WB|WBGene00003061	176	lpd-5 [Caenorhabditis elegans	0.898	0.505	0.455	1.2e-17
UNIPROTKB|Q02375	175	NDUFS4 "NADH dehydrogenase [ub	0.878	0.497	0.466	2.5e-17
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	0.878	0.497	0.455	2.5e-17
MGI|MGI:1343135	175	Ndufs4 "NADH dehydrogenase (ub	0.878	0.497	0.466	2.5e-17
UNIPROTKB|F1SLQ3	134	F1SLQ3 "Uncharacterized protei	0.878	0.649	0.455	5.3e-17
UNIPROTKB|Q66XS7	175	NDUFS4 "NADH dehydrogenase [ub	0.878	0.497	0.455	5.3e-17

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 68/97 (70%), Positives = 83/97 (85%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             ++ ARTA+Q GSGK+GKW INF+ST KWENPLMGWTSTGDPYANVG++ L FDSE AA++
Sbjct:    57 YSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKS 116

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPKDD 99
             FAE+HGW+Y V+K + PLLK KSY DNFKWKG P+ +
Sbjct:   117 FAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPE 153

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/90 (47%), Positives = 53/90 (58%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR A Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct:    21 FVPARNAMQAGVNNTKKWKMEFDNRERWENPLMGWASTADPLSNMV---LTFSTKEDAIA 77

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW Y V +   P  K KSYG NF W
Sbjct:    78 FAEKNGWNYDVEEKKIPKPKSKSYGANFSW 107

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1594380 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/90 (47%), Positives = 51/90 (56%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct:    80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMV---LTFSAKEDAVA 136

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEKHGW Y V     P  K KSYG NF W
Sbjct:   137 FAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0045333 "cellular respiration" evidence=IEA;ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 42/90 (46%), Positives = 55/90 (61%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR A Q G     KW I+F + ++WENPLMGW+ST DP +N+    L F ++  A A
Sbjct:    73 FVPARNAMQSGVKNTHKWKIDFDTRERWENPLMGWSSTADPLSNMV---LTFSTKEDAIA 129

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW Y + +   P  + KSYG NF W
Sbjct:   130 FAEKNGWSYDITEKRVPKPRVKSYGANFSW 159

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

WB|WBGene00003061 lpd-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 41/90 (45%), Positives = 53/90 (58%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR  +Q   G    W I   + Q+WENPLMGW+ T DP +NVG   L F ++  A A
Sbjct:    79 FRPARETTQSAWGNTKSWTIELDNRQRWENPLMGWSGTADPLSNVG-MDLKFATKEDAIA 137

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             F EK+ WE+ V + H   +KPK+YG NF W
Sbjct:   138 FCEKNRWEFDVEEPHERKIKPKNYGQNFSW 167

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q02375 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 42/90 (46%), Positives = 52/90 (57%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct:    80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLV---LTFSTKEDAVA 136

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW Y V +   P  K KSYG NF W
Sbjct:   137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

GO:0051591 "response to cAMP" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 41/90 (45%), Positives = 52/90 (57%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct:    80 FVPARDNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMV---LTFSTKEDAAA 136

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW Y + +   P  K KSYG NF W
Sbjct:   137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:1343135 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 42/90 (46%), Positives = 52/90 (57%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR   Q G     KW + F + ++WENPLMGW ST DP +N+    L F ++  A A
Sbjct:    80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMV---LTFSAKEDAIA 136

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW Y V +   P  K KSYG NF W
Sbjct:   137 FAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0045271 "respiratory chain complex I" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0051591 "response to cAMP" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|F1SLQ3 F1SLQ3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/90 (45%), Positives = 53/90 (58%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR   Q G     KW + F + ++WENPLMGW+ST DP +N+    L F ++  A A
Sbjct:    39 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLV---LTFSTKEDAVA 95

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW + V +   P  K KSYG NF W
Sbjct:    96 FAEKNGWSFDVEERKVPKPKSKSYGANFSW 125

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0051591 "response to cAMP" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0045333 "cellular respiration" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|Q66XS7 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gekko japonicus (taxid:146911)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/90 (45%), Positives = 53/90 (58%)

Query:     3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
             F  AR   Q G     KW + F + ++WENPLMGW+ST DP +N+    L F ++  A A
Sbjct:    80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLV---LTFSTKEDAVA 136

Query:    63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
             FAEK+GW + V +   P  K KSYG NF W
Sbjct:   137 FAEKNGWSFDVEERKVPKPKSKSYGANFSW 166

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJW4	NDUS4_ARATH	No assigned EC number	0.7157	0.9595	0.6168	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BRADI1G23160.1	annotation not avaliable (158 aa)
		(Brachypodium distachyon)
Predicted Functional Partners:
	BRADI1G07150.1	annotation not avaliable (223 aa)			•	•	•	•	•		0.928
	BRADI1G11520.1	annotation not avaliable (745 aa)			•	•		•	•		0.876
	BRADI3G55340.1	annotation not avaliable (412 aa)			•	•		•	•		0.849
	BRADI2G20370.1	annotation not avaliable (282 aa)				•		•	•		0.815
	BRADI1G53800.1	annotation not avaliable (535 aa)				•		•	•		0.742
	BRADI1G64250.1	annotation not avaliable (173 aa)				•		•	•		0.673
	BRADI3G42710.1	annotation not avaliable (305 aa)				•		•			0.671
	BRADI3G34560.1	annotation not avaliable (208 aa)			•	•		•			0.638
	BRADI3G16290.1	annotation not avaliable (114 aa)				•		•	•		0.618
	BRADI1G71700.1	annotation not avaliable (143 aa)				•		•			0.582

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	2e-35
cd08586	279	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of B	0.003

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  116 bits (291), Expect = 2e-35
 Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 3  FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
          +  AR A Q G  +  KW + F  + +WENPLMGWTSTGDP +N  E  L F ++ AA A
Sbjct: 6  YRPARNAMQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQME--LTFPTKEAAIA 63

Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPK 97
          FAE+ GWEY V + +AP  KPK+Y DNF W    +
Sbjct: 64 FAERQGWEYDVEEPNAPKAKPKAYSDNFSWNRRTR 98

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

>gnl|CDD|176528 cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 4   THARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYAN 46
            H   A+   S    K +INF S      PL G         N
Sbjct: 200 AHLDKAASNSSSS-NKLYINFTSGSGGGFPLGGGPGKYAEGIN 241

This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which contains a single TIM-barrel type catalytic domain, X domain. They are similar to bacterial PI-PLCs, and distinct from typical eukaryotic PI-PLCs, which have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains, and strictly require Ca2+ for their catalytic activities. The prototype of this family is Bacillus cereus PI-PLC, which has a moderate thermal stability and is active as a monomer. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	100.0
PF09954	62	DUF2188: Uncharacterized protein conserved in bact	88.64
PHA02552	151	4 head completion protein; Provisional	85.73
PRK05370	447	argininosuccinate synthase; Validated	83.29
PF08727	57	P3A: Poliovirus 3A protein like; InterPro: IPR0148	81.69
PF05573	149	NosL: NosL; InterPro: IPR008719 NosL is one of the	80.02

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=1.4e-53  Score=293.33  Aligned_cols=93  Identities=44%  Similarity=0.896  Sum_probs=58.8

Q ss_pred             CCccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCcCcCCCCCcccc-cCCceeecCCHHHHHHHHHHhCCcEEEeecCCC
Q 043542            1 SSFTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYAN-VGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAP   79 (99)
Q Consensus         1 rIy~p~k~a~QSG~~~~~~W~lefe~~~~~~dPLMGWtss~D~~sq-v~~~~l~F~ske~Ai~yaek~G~~y~V~~p~~~   79 (99)
                      |||+|+|+|||||+++++.|+|||+..++|+|||||||||+||++| |   +|+|+|+|+||+||++|||+|+|++|+.+
T Consensus         4 rIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~p~~r   80 (101)
T PF04800_consen    4 RIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEEPKKR   80 (101)
T ss_dssp             EEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-STT-
T ss_pred             EEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeCCCCC
Confidence            7999999999999999999999999889999999999999999998 8   99999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCCC
Q 043542           80 LLKPKSYGDNFKWKGPP   96 (99)
Q Consensus        80 ~~~~ksYadNF~~~~~~   96 (99)
                      ++++|||||||+|++..
T Consensus        81 ~~~~ksY~dNF~~~r~~   97 (101)
T PF04800_consen   81 KRRPKSYADNFSWNRRT   97 (101)
T ss_dssp             -----------------
T ss_pred             cCCcccHHHhCCcCCCC
Confidence            99999999999999865

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=100.00  E-value=1.6e-47  Score=280.43  Aligned_cols=97  Identities=56%  Similarity=1.032  Sum_probs=94.3

Q ss_pred             CCccCCCCCCCCCCCCCCCcEEEecCCCCCCCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecCCCC
Q 043542            1 SSFTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPL   80 (99)
Q Consensus         1 rIy~p~k~a~QSG~~~~~~W~lefe~~~~~~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~~~~   80 (99)
                      |||.|+|++||||.+|+++|.|||+.+.+|+||||||+|++||+++|+ +.|.|+|+|+|++|||||||+|.|++|+.++
T Consensus        79 rIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDPlsNvg-m~L~F~tkEdA~sFaEkngW~ydveep~~pk  157 (178)
T KOG3389|consen   79 RIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADPLSNVG-MALAFDTKEDAKSFAEKNGWDYDVEEPNTPK  157 (178)
T ss_pred             EEecchhhhhhcccCCccceEEEecchhhccCccccccccCCcccccc-eeeeeccHHHHHHHHHHcCCcccccCCCCCc
Confidence            799999999999999999999999999999999999999999999996 5899999999999999999999999999999


Q ss_pred             CCCccccccCCCCCCCCC
Q 043542           81 LKPKSYGDNFKWKGPPKD   98 (99)
Q Consensus        81 ~~~ksYadNF~~~~~~~~   98 (99)
                      +++||||+||+|||++..
T Consensus       158 ~K~KsYg~NFsWn~rtr~  175 (178)
T KOG3389|consen  158 LKVKSYGDNFSWNGRTRP  175 (178)
T ss_pred             cccccccccccccCCCCC
Confidence            999999999999999854

>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function

Probab=88.64  E-value=0.36  Score=29.53  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=19.7

Q ss_pred             eeecCCHHHHHHHHHH----h-CCcEEEeecC
Q 043542           51 GLCFDSEAAARAFAEK----H-GWEYTVRKFH   77 (99)
Q Consensus        51 ~l~F~ske~Ai~yaek----~-G~~y~V~~p~   77 (99)
                      ...|+|+++||++|++    + +-+..|....
T Consensus        22 ~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~d   53 (62)
T PF09954_consen   22 SKTFDTKAEAIEAARELAKNQGGGELIIHGRD   53 (62)
T ss_pred             ccccCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            5789999999998764    3 5666666544

>PHA02552 4 head completion protein; Provisional

Probab=85.73  E-value=0.75  Score=33.80  Aligned_cols=21  Identities=38%  Similarity=0.661  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhCCcEEEeecC
Q 043542           57 EAAARAFAEKHGWEYTVRKFH   77 (99)
Q Consensus        57 ke~Ai~yaek~G~~y~V~~p~   77 (99)
                      -++|.+||+++||.|.|....
T Consensus       120 ~~Aa~~~a~~~Gw~F~iiTE~  140 (151)
T PHA02552        120 WKAARALCEKKGWKFKIITED  140 (151)
T ss_pred             HHHHHHHHHHcCCEEEEEEHH
Confidence            478999999999999988754

>PRK05370 argininosuccinate synthase; Validated

Probab=83.29  E-value=0.79  Score=38.99  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             eecCCHHHHHHHHHHhCCcEEEe
Q 043542           52 LCFDSEAAARAFAEKHGWEYTVR   74 (99)
Q Consensus        52 l~F~ske~Ai~yaek~G~~y~V~   74 (99)
                      -.|+|+++.|+||++|||+..+.
T Consensus       164 ~~f~sR~e~i~Ya~~hGIpv~~~  186 (447)
T PRK05370        164 DELGGRAEMSEFLIAHGFDYKMS  186 (447)
T ss_pred             cccCCHHHHHHHHHHcCCCCCcc
Confidence            36899999999999999998543

>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses

Probab=81.69  E-value=1.1  Score=28.37  Aligned_cols=16  Identities=25%  Similarity=0.715  Sum_probs=11.1

Q ss_pred             HHHHHHHHHhCCcEEE
Q 043542           58 AAARAFAEKHGWEYTV   73 (99)
Q Consensus        58 e~Ai~yaek~G~~y~V   73 (99)
                      ++-+.||+++||-..+
T Consensus        30 ~eV~~YC~~~GWIip~   45 (57)
T PF08727_consen   30 PEVREYCEEQGWIIPA   45 (57)
T ss_dssp             HHHHHHHHHHT--TT-
T ss_pred             HHHHHHHHHCCccccC
Confidence            5689999999996544

It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.

>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster

Probab=80.02  E-value=2.2  Score=30.39  Aligned_cols=51  Identities=25%  Similarity=0.574  Sum_probs=28.2

Q ss_pred             CCCcEEEecCCCCCCCCCc-CcCCC--------CCcccccCCceeecCCHHHHHHHHHHhC
Q 043542           17 VGKWFINFLSTQKWENPLM-GWTST--------GDPYANVGEAGLCFDSEAAARAFAEKHG   68 (99)
Q Consensus        17 ~~~W~lefe~~~~~~dPLM-GWtss--------~D~~sqv~~~~l~F~ske~Ai~yaek~G   68 (99)
                      ...|+-+|.. ..|.+|-- -|...        +|-.+-++..-+-|.++++|.+|+++||
T Consensus        76 ~~~~V~D~~~-~~~~~p~~~~~Ida~~A~yV~gs~~~~pMg~~~~aF~~~~~A~~F~~~~G  135 (149)
T PF05573_consen   76 AAIYVTDYST-TDWDQPGDGEWIDAKKAYYVVGSDVRGPMGPDLIAFASKEDAEAFAKEHG  135 (149)
T ss_dssp             EEEEEEES-T-S-TT-S---EEEEGGGSEEEEESSSS-TTS--EEEES-HHHHHHHHHHTE
T ss_pred             cEEEEEeccc-ccccCCCCCceEEcceEEEEECCCcCCCCCCcccccCCHHHHHHHHHHcC
Confidence            3568888877 44555442 33332        2222222334688999999999999998

NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		7e-08
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		2e-07

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 6  ARTASQQGSGKVGKWFINF-LSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFA 64
          A+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L F+++  A A+A
Sbjct: 12 AKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFETQEQAEAYA 68
Query: 65 EKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
          ++ G EY V        K  SY DNF++
Sbjct: 69 QRKGIEYRVILPKEATRKVVSYTDNFRF 96

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 6   ARTASQQGSGKVGKWFINFL-STQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFA 64
           A++  Q G  K+  W + F  S  ++  PLM WT + D    V    L F +   A A+A
Sbjct: 20  AKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVC---LSFTTRELAIAYA 76
Query: 65  EKHGWEYTVRKFHAPLLKPKSYGDNF 90
             H  +YTV + +   + PKSY DNF
Sbjct: 77  VAHKIDYTVLQDNPRTIVPKSYADNF 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	6e-28
2lju_A	108	Putative oxidoreductase; structural genomics, seat	8e-28

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score = 96.7 bits (241), Expect = 6e-28
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 6  ARTASQQGSGKVGKWFINFL-STQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFA 64
          A+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L F+++  A A+A
Sbjct: 12 AKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFETQEQAEAYA 68

Query: 65 EKHGWEYTVRKFHAPLLKPKSYGDNFKWK 93
          ++ G EY V        K  SY DNF++ 
Sbjct: 69 QRKGIEYRVILPKEATRKVVSYTDNFRFN 97

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score = 96.3 bits (240), Expect = 8e-28
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 6   ARTASQQGSGKVGKWFINFL-STQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFA 64
           A++  Q G  K+  W + F  S  ++  PLM WT + D    V    L F +   A A+A
Sbjct: 20  AKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVC---LSFTTRELAIAYA 76

Query: 65  EKHGWEYTVRKFHAPLLKPKSYGDNFKWK 93
             H  +YTV + +   + PKSY DNF   
Sbjct: 77  VAHKIDYTVLQDNPRTIVPKSYADNFTKP 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	88.94
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	85.17
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	84.35
2hpu_A	175	NOSL protein; alpha beta topology, metal transport	81.76

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=1.2e-54  Score=300.93  Aligned_cols=92  Identities=32%  Similarity=0.550  Sum_probs=89.5

Q ss_pred             CCccCCCCCCCCCCCCCCCcEEEecCC-CCCCCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecCCC
Q 043542            1 SSFTHARTASQQGSGKVGKWFINFLST-QKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAP   79 (99)
Q Consensus         1 rIy~p~k~a~QSG~~~~~~W~lefe~~-~~~~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~~~   79 (99)
                      |||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+|||+|||+|+|++|+.+
T Consensus        15 rIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~ep~~~   91 (108)
T 2lju_A           15 RIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYAVAHKIDYTVLQDNPR   91 (108)
T ss_dssp             EEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEecCCcc
Confidence            799999999999999999999999996 69999999999999999999   99999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCC
Q 043542           80 LLKPKSYGDNFKWKGP   95 (99)
Q Consensus        80 ~~~~ksYadNF~~~~~   95 (99)
                      ++++|+|||||+|+.+
T Consensus        92 ~~r~ksYadNF~~~r~  107 (108)
T 2lju_A           92 TIVPKSYADNFTKPRD  107 (108)
T ss_dssp             CCCCCCCCCCCCCCCC
T ss_pred             cCCcCchHHHCCccCC
Confidence            9999999999999865

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=1.4e-54  Score=299.73  Aligned_cols=92  Identities=33%  Similarity=0.553  Sum_probs=74.7

Q ss_pred             CCccCCCCCCCCCCCCCCCcEEEecCC-CCCCCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecCCC
Q 043542            1 SSFTHARTASQQGSGKVGKWFINFLST-QKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAP   79 (99)
Q Consensus         1 rIy~p~k~a~QSG~~~~~~W~lefe~~-~~~~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~~~   79 (99)
                      |||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+|||+|||+|+|++|+.+
T Consensus         7 rIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~ep~~~   83 (106)
T 2jya_A            7 KIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVILPKEA   83 (106)
T ss_dssp             EEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECCCTTC
T ss_pred             EEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeCCCcC
Confidence            799999999999999999999999996 79999999999999999998   99999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCC
Q 043542           80 LLKPKSYGDNFKWKGP   95 (99)
Q Consensus        80 ~~~~ksYadNF~~~~~   95 (99)
                      ++++|+|||||+|+.+
T Consensus        84 ~~r~ksYadNF~~~r~   99 (106)
T 2jya_A           84 TRKVVSYTDNFRFNRT   99 (106)
T ss_dssp             ----------------
T ss_pred             cCCcCchHHhCCcCCC
Confidence            9999999999999865

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=88.94  E-value=0.19  Score=36.91  Aligned_cols=22  Identities=23%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             eeecCCHHHHHHHHHHhCCcEE
Q 043542           51 GLCFDSEAAARAFAEKHGWEYT   72 (99)
Q Consensus        51 ~l~F~ske~Ai~yaek~G~~y~   72 (99)
                      .|.|+|.++++.||+++||...
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i~  220 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDIR  220 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEEe
Confidence            5889999999999999999764

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=85.17  E-value=0.43  Score=37.09  Aligned_cols=22  Identities=18%  Similarity=0.170  Sum_probs=20.7

Q ss_pred             eeecCCHHHHHHHHHHhCCcEE
Q 043542           51 GLCFDSEAAARAFAEKHGWEYT   72 (99)
Q Consensus        51 ~l~F~ske~Ai~yaek~G~~y~   72 (99)
                      .|.|+|.|+|++||+.+||.+.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~  254 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII  254 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe
Confidence            4889999999999999999996

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.35  E-value=0.37  Score=36.52  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             eeecCCHHHHHHHHHHhCCcE
Q 043542           51 GLCFDSEAAARAFAEKHGWEY   71 (99)
Q Consensus        51 ~l~F~ske~Ai~yaek~G~~y   71 (99)
                      .|.|+|.+++++||+++||..
T Consensus       208 ~L~F~s~~e~~~F~~~~gW~~  228 (274)
T 4b4t_T          208 LLFFNNEKETEKFALERNWPI  228 (274)
T ss_dssp             HHTCCSHHHHHHHHHHTTCCC
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            588999999999999999975

>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A

Probab=81.76  E-value=1  Score=32.28  Aligned_cols=53  Identities=21%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             CCCcEEEecC-CCCCCCCCcC-cCC--------CCCcccccC-CceeecCCHHHHHHHHHHhCC
Q 043542           17 VGKWFINFLS-TQKWENPLMG-WTS--------TGDPYANVG-EAGLCFDSEAAARAFAEKHGW   69 (99)
Q Consensus        17 ~~~W~lefe~-~~~~~dPLMG-Wts--------s~D~~sqv~-~~~l~F~ske~Ai~yaek~G~   69 (99)
                      ...||-+|.. ...|+.|--+ |..        .+|-..-++ ..-+-|.++++|.+|++++|=
T Consensus        69 ~aiyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG  132 (175)
T 2hpu_A           69 LVIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG  132 (175)
T ss_dssp             EEEEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred             eEEEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCC
Confidence            3568999987 3556555221 421        123222222 236899999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	91.13

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.029  Score=35.10  Aligned_cols=24  Identities=13%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eecCCHHHHHHHHHHhCCcEEEee
Q 043542           52 LCFDSEAAARAFAEKHGWEYTVRK   75 (99)
Q Consensus        52 l~F~ske~Ai~yaek~G~~y~V~~   75 (99)
                      |.|.||+|=++||++||++|....
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~~~~  186 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYKMSV  186 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCCCCC
Confidence            446799999999999999997543