Citrus Sinensis ID: 043548
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 385 | ||||||
| 224108926 | 386 | predicted protein [Populus trichocarpa] | 0.989 | 0.987 | 0.640 | 1e-151 | |
| 359473475 | 389 | PREDICTED: uncharacterized glycosyltrans | 0.994 | 0.984 | 0.619 | 1e-143 | |
| 147781784 | 515 | hypothetical protein VITISV_007350 [Viti | 0.976 | 0.730 | 0.624 | 1e-141 | |
| 297738189 | 354 | unnamed protein product [Vitis vinifera] | 0.909 | 0.988 | 0.585 | 1e-131 | |
| 255542124 | 394 | glycosyltransferase, putative [Ricinus c | 0.953 | 0.931 | 0.568 | 1e-130 | |
| 186499027 | 451 | Glycosyltransferase family 61 protein [A | 0.979 | 0.835 | 0.547 | 1e-127 | |
| 186499036 | 455 | Glycosyltransferase family 61 protein [A | 0.979 | 0.828 | 0.547 | 1e-127 | |
| 79551059 | 452 | Glycosyltransferase family 61 protein [A | 0.976 | 0.831 | 0.551 | 1e-127 | |
| 4335761 | 458 | unknown protein [Arabidopsis thaliana] | 0.976 | 0.820 | 0.551 | 1e-126 | |
| 4335762 | 393 | unknown protein [Arabidopsis thaliana] | 0.979 | 0.959 | 0.547 | 1e-126 |
| >gi|224108926|ref|XP_002315018.1| predicted protein [Populus trichocarpa] gi|222864058|gb|EEF01189.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 246/384 (64%), Positives = 310/384 (80%), Gaps = 3/384 (0%)
Query: 2 ISCDRSHQNYDICSVNGPTTLDPTTSTFFLVDPAPASA-EKIRPYPRKWENFVMQRIEEV 60
I+CDRSH+ YD+C++NGPT LDP ST +L P ++ EKIRPYPRKWE +M I+E
Sbjct: 1 INCDRSHRFYDLCTINGPTVLDPVNSTLYLSVPTNSTTVEKIRPYPRKWEKPIMAGIQEF 60
Query: 61 TISSGPSSPKCEVQHNVPALVFSVGGYTGNFWHEFNDGFVPLFITVHSIFP-NQEIVLVI 119
T+ S SP C+ QH +PA+VFS GYTGNF+H+FNDGF+PLFITV+S+FP NQ+ +LVI
Sbjct: 61 TLISNSKSPLCQAQHKLPAIVFSAAGYTGNFFHDFNDGFIPLFITVNSVFPDNQDFILVI 120
Query: 120 DKARGWWISKYAELLHAFSKQPIILLDNDTATHCFTSATIGLISHGYMTVDPTLMPNSKT 179
+A+ WWISKY +LLH +SK P+I+ +N+T+THCF SAT+GLISHG+MT+DP LMPNS+
Sbjct: 121 SQAQNWWISKYGDLLHTYSKHPVIIPENETSTHCFPSATLGLISHGFMTIDPKLMPNSQA 180
Query: 180 FVHFRGLLDEAYSHGRIRN-RNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFE 238
HF LD+AY+HG+ ++N P R RL+L +R GG+GRVI NQ EVK +AE+ GF+
Sbjct: 181 LTHFHAFLDKAYNHGQNHPWKSNPPKPRARLVLATRNGGVGRVISNQNEVKHLAEEIGFD 240
Query: 239 VTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVC 298
V +FEP P+T L+QAYALINSSHAMVGVHGA LTHSLFLRPG VF+QVVP+G +W+AEVC
Sbjct: 241 VIIFEPIPQTPLQQAYALINSSHAMVGVHGAGLTHSLFLRPGVVFMQVVPIGADWLAEVC 300
Query: 299 FGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYLKEQNV 358
F SA+AMGL+Y+EY+I AEESSLI+KY KN +IKDP FRG++WS A M+IYLKEQNV
Sbjct: 301 FANSARAMGLEYLEYRIGAEESSLIDKYGKNSLLIKDPATFRGQNWSSAIMDIYLKEQNV 360
Query: 359 KLDLFRFREYLKKVYKKAKRFMDK 382
K+DL RFREYLK+ YKKAK FM+K
Sbjct: 361 KIDLIRFREYLKEAYKKAKEFMEK 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473475|ref|XP_002266097.2| PREDICTED: uncharacterized glycosyltransferase AER61-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147781784|emb|CAN72290.1| hypothetical protein VITISV_007350 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297738189|emb|CBI27390.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255542124|ref|XP_002512126.1| glycosyltransferase, putative [Ricinus communis] gi|223549306|gb|EEF50795.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|186499027|ref|NP_178435.2| Glycosyltransferase family 61 protein [Arabidopsis thaliana] gi|330250597|gb|AEC05691.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|186499036|ref|NP_001118256.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] gi|330250598|gb|AEC05692.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|79551059|ref|NP_178436.2| Glycosyltransferase family 61 protein [Arabidopsis thaliana] gi|49660111|gb|AAT68346.1| hypothetical protein At2g03370 [Arabidopsis thaliana] gi|60547697|gb|AAX23812.1| hypothetical protein At2g03370 [Arabidopsis thaliana] gi|330250599|gb|AEC05693.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|4335761|gb|AAD17438.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|4335762|gb|AAD17439.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 385 | ||||||
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.976 | 0.831 | 0.544 | 7.1e-116 | |
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.979 | 0.828 | 0.544 | 1.3e-114 | |
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.955 | 0.736 | 0.430 | 1.6e-79 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.854 | 0.652 | 0.437 | 3.2e-72 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.867 | 0.676 | 0.422 | 9.9e-71 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.909 | 0.911 | 0.325 | 1.3e-50 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.901 | 0.738 | 0.318 | 1.8e-48 | |
| UNIPROTKB|Q5NDE8 | 577 | GTDC2 "Glycosyltransferase-lik | 0.589 | 0.393 | 0.232 | 2.2e-05 | |
| UNIPROTKB|Q5NDL3 | 535 | EOGT "EGF domain-specific O-li | 0.612 | 0.441 | 0.241 | 5.5e-05 | |
| UNIPROTKB|F1NHC9 | 530 | EOGT "EGF domain-specific O-li | 0.612 | 0.445 | 0.241 | 9.1e-05 |
| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
Identities = 210/386 (54%), Positives = 287/386 (74%)
Query: 2 ISCDRSHQNYDICSVNGPTTLDPTTSTFFLVDPAPAS-AEKIRPYPRKWENFVMQRIEEV 60
I+CDRSH NYD+CS+NG LD T T L+DP A EKIRPYP+K +N++M RI E+
Sbjct: 68 ITCDRSHTNYDLCSINGSCNLDLKTGTLTLMDPTSAPLVEKIRPYPKKADNWIMPRIREL 127
Query: 61 TISSGPSS-PK-CEVQHNVPALVFSVGGYTGNFWHEFNDGFVPLFITVHSIFPNQEIVLV 118
T++SGP P+ C++ H++PA+VFS GGYTG+ +H+ DGF+PLFIT +S++P+++ + V
Sbjct: 128 TLTSGPLGLPRSCDITHDLPAIVFSAGGYTGSIYHDLMDGFIPLFITANSVYPDRDFIPV 187
Query: 119 IDKARGWWISKYAELLHAFSK-QPIILLDNDTA--THCFTSATIGLISHGYMTVDPTLMP 175
+ A+ WW+ KY ++L FSK +PI+LLD ++ THCFTSA +GLI+H MT+DPT +P
Sbjct: 188 VVNAKEWWMPKYIDILGTFSKHKPILLLDKESVATTHCFTSAIVGLITHWPMTIDPTQIP 247
Query: 176 NSKTFVHFRGLLDEAYSHGXXXXXXXXXXXXXXLMLMSRRGGLGRVILNQVEVKRVAEDT 235
NSK+ V F LL++A++ LML+SR G +GRVILN+ E+K + ED
Sbjct: 248 NSKSLVDFHNLLEKAFT----TNISTPKTHKPRLMLVSRYGNIGRVILNEQEIKEMLEDV 303
Query: 236 GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVA 295
GFEV +F P+ T+L++AY LI SSH MVGVHGAALTH LFLRPGS+FVQVVPLGL W +
Sbjct: 304 GFEVIIFRPSKTTNLKEAYKLIKSSHGMVGVHGAALTHLLFLRPGSIFVQVVPLGLGWAS 363
Query: 296 EVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYLKE 355
+ C+ + AK M L+Y+EYK+N EESSLIEKYN++D V+KDP+A+RG W+ M +YLKE
Sbjct: 364 KPCYESPAKTMKLEYLEYKVNVEESSLIEKYNRDDLVLKDPIAYRGMDWNATKMKVYLKE 423
Query: 356 QNVKLDLFRFREYLKKVYKKAKRFMD 381
Q+V LD+ RFR+++ + YKKAK FMD
Sbjct: 424 QDVSLDVNRFRKHMNEAYKKAKIFMD 449
|
|
| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5NDE8 GTDC2 "Glycosyltransferase-like domain-containing protein 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5NDL3 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NHC9 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.X.924.1 | hypothetical protein (386 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 385 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 4e-21 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 4e-05 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-21
Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 27/224 (12%)
Query: 89 GNFWHEFNDGFVPLFITVHSIFPNQEIVLVIDKARGWWISKYA-ELLHAFS-KQPIILLD 146
NF H D L++ I + IVL+ D + E L + I+L
Sbjct: 1 NNFGHWLLDFLPRLWLLPEEILDDDIIVLIPDS---GSPPPFIREFLELLGIPEDRIVLK 57
Query: 147 NDTATHCFTSATIGLISHGYMTVDPTLMPNSKTFVHFRGLLDEAYSHGRIRNRNNSPSTR 206
D + P +F LL +R R N +
Sbjct: 58 YDEPVRV---------ERLIVPSPPFPAGG-----YFGPLLPRLRD--LLRERFNLSKIK 101
Query: 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV 266
PR + +SR+ R ILN+ E++ GFE+ E SL + L +S+ +VG
Sbjct: 102 PRKVYISRKKAGRRRILNEDELEEALPKYGFEIVDPE---TLSLEEQVKLFSSAKVIVGP 158
Query: 267 HGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDY 310
HG+ALT+ +F+ PG+ V++VP F A +GLDY
Sbjct: 159 HGSALTNLIFMPPGTGVVELVPPNRLD---PSFRNLAALLGLDY 199
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 385 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.97 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.84 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.4 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.71 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 84.49 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-79 Score=607.45 Aligned_cols=377 Identities=41% Similarity=0.717 Sum_probs=350.6
Q ss_pred CccccCCCCCccceeeeCCeeecCCccEEEEECCC-----CCCccccCCCCCCcchhccCcceeEEEeeCC--CCCCCce
Q 043548 1 QISCDRSHQNYDICSVNGPTTLDPTTSTFFLVDPA-----PASAEKIRPYPRKWENFVMQRIEEVTISSGP--SSPKCEV 73 (385)
Q Consensus 1 ~i~Cd~~~~~~d~c~~~gd~r~~~~~~~~~~~~~~-----~~~~~~i~py~rk~~~~~m~~v~e~~~~~~~--~~~~C~~ 73 (385)
.|+||+++.++|+|+++||+|+|+.++|+++.... .+.+|+||||+||||..+|+.|+|+++...+ ...+|++
T Consensus 85 ~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r~c~v 164 (475)
T KOG4698|consen 85 SFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIRRCDV 164 (475)
T ss_pred eEEeeccccccchhhhcCccccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccceeee
Confidence 37999999999999999999999999999988764 5679999999999999999999999998776 3478999
Q ss_pred EEeccEEEEEecCCCCCcchhhhhhhHHHHHHhhhhCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCceecCCCCCeee
Q 043548 74 QHNVPALVFSVGGYTGNFWHEFNDGFVPLFITVHSIFPNQEIVLVIDKARGWWISKYAELLHAFSKQPIILLDNDTATHC 153 (385)
Q Consensus 74 ~~~~pavv~s~~gy~~N~~H~~~D~liPlf~t~~~~~~~~~v~lvi~d~~~~w~~~y~~ll~~ls~~~ii~l~~~~~~~C 153 (385)
+|++|++||++|||++|.||+|+|+++|||++.++...+++++++|++..+||..+|.+++++||+||+++++++..+||
T Consensus 165 ~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~Thc 244 (475)
T KOG4698|consen 165 NHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHC 244 (475)
T ss_pred ecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999994222999999999999999999999999999999999999999999
Q ss_pred ecceEecccccCCCccCCCCCCCC--ccHHHHHHHHHHHhCCCC---cCCCCCCCCCCCeEEEEEccCCCCcccccHHHH
Q 043548 154 FTSATIGLISHGYMTVDPTLMPNS--KTFVHFRGLLDEAYSHGR---IRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEV 228 (385)
Q Consensus 154 F~~aivGl~~~~~l~idp~~~p~~--~~~~~F~~fl~~~~~l~~---~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev 228 (385)
|++++|||..|.+++++|+..|.+ .+|.+|++++..+|+... ..+. .+..++||+++++|.++ |.|+||+||
T Consensus 245 F~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~-~~~~kkpri~~lsR~~~--r~Ilne~el 321 (475)
T KOG4698|consen 245 FKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTA-PEPWKKPRITILSRAGS--RAILNEDEL 321 (475)
T ss_pred eeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCC-cChhhCCceEEEecccc--hhhhcchhh
Confidence 999999999999999999988776 899999999999998632 1111 12235799999999998 999999999
Q ss_pred HHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCC-ccccccccHHHHHhhcC
Q 043548 229 KRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLG-LEWVAEVCFGTSAKAMG 307 (385)
Q Consensus 229 ~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g-~~~~~~~~y~~~A~~~g 307 (385)
.+++++.||+|.++++. ..++.+|+++.+++|||||+|||||||++|+||++.+|||.|+| .+|.+..+|..+|+.|+
T Consensus 322 ~~~~~~~gf~v~~~~~~-~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~ 400 (475)
T KOG4698|consen 322 PRMLEDIGFEVSVLRPD-RTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMT 400 (475)
T ss_pred hHHHHhCCCceEEeccc-ccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccceec
Confidence 99999999999999885 39999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcEEEEEecccccchhhhcCCCCccccCCccccCCCcchhhhhhhhcCCceEEchHhHHHHHHHHHHHHHhhhh
Q 043548 308 LDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYLKEQNVKLDLFRFREYLKKVYKKAKRFMD 381 (385)
Q Consensus 308 l~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~~~~gw~~~~~~~yl~~Qdv~ldi~rF~~~L~~a~~~~~~~~~ 381 (385)
++|.+|+|.++||+|.++|++||+++.||.+..++||+..++++|+..|+|++|+.||++.+.+|+...+.+|+
T Consensus 401 l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~~~~~~ 474 (475)
T KOG4698|consen 401 LEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKEITQLG 474 (475)
T ss_pred cccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998877789999999999999999999999999988853
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 385 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 4e-09
Identities = 54/272 (19%), Positives = 79/272 (29%), Gaps = 66/272 (24%)
Query: 129 KYAELLHAFSKQPIILLD----NDTATHCFTSATIGLI-------SHGYMTVDPTLMPNS 177
+Y ++L F + D D + I I S L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 178 KTFVHF-RGLLDEAYS--HGRIRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAED 234
+ F +L Y I+ PS M + +R L NQV K
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYND--NQVFAKY---- 129
Query: 235 TGFEVTVFEPTPKTSLRQAYALIN-SSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEW 293
V P LRQ AL+ V + G GS G W
Sbjct: 130 -----NVSRLQPYLKLRQ--ALLELRPAKNVLIDGVL---------GS--------GKTW 165
Query: 294 -VAEVCFGTSAKAMGLDYMEYKI-------NAEESSLIEKYNKNDTVIKDPVAFRGKSWS 345
+VC + M++KI +++E K I S S
Sbjct: 166 VALDVCLSYKVQCK----MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRS 217
Query: 346 DAAMNIYLKEQNVKLDLFRFREYLK-KVYKKA 376
D + NI L+ +++ R LK K Y+
Sbjct: 218 DHSSNIKLRIHSIQA---ELRRLLKSKPYENC 246
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 385 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 88.65 | |
| d2bona1 | 295 | Lipid kinase YegS {Escherichia coli [TaxId: 562]} | 83.91 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=88.65 E-value=0.99 Score=35.36 Aligned_cols=92 Identities=11% Similarity=0.206 Sum_probs=66.0
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhc--cCCCcEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLF--LRPGSVF 283 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lF--l~pgs~v 283 (385)
|||+++ .+.-. ++.++.+++. |+++.......++-+|-++.+.++|++|...+..++.-+| +|+.-.+
T Consensus 1 K~kVli-t~~~~--------~~~~~~l~~~-~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~ 70 (129)
T d1gdha2 1 KKKILI-TWPLP--------EAAMARARES-YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKC 70 (129)
T ss_dssp CCEEEE-SSCCC--------HHHHHHHHTT-SEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCE
T ss_pred CCEEEE-eCCCC--------HHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhccee
Confidence 577664 44332 6778888774 6887665445689999999999999999888888999998 5566777
Q ss_pred EEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 284 VQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 284 iEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
|--+.-|++... -..|+..|+.-.
T Consensus 71 I~~~gvG~d~ID----~~~a~~~gI~V~ 94 (129)
T d1gdha2 71 ISTYSIGFDHID----LDACKARGIKVG 94 (129)
T ss_dssp EEEESSCCTTBC----HHHHHHTTCEEE
T ss_pred eeecccCCcccc----HHHHHhCCCEEE
Confidence 777777764322 345667787643
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| >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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