Citrus Sinensis ID: 043567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-
Protein Sequence
MKGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFWSFCA
Secondary Structure (PSIPRED)
cccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccEEccccHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccHHcccccccccccHHHcccccccEEEccccccccccccHcHHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHcccccHEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccHHHHHHcccccccccccccccccccccccEEEHHHccccccccHHHcccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccHHEEEEEEEc
Coil and Loop (DISEMBL)
MKGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKsffipfmdtqyedpvlatwvddggmssdccnwkgvrcnatTGRVIQLLLNDTSkfieysknytygdMVLSLnvslfhpfeelqsldlsnnsfegvyenqaydtlgsLKRLKILNlgynyfddSIFLYLNALTSLTTLILRenniqgsrtkqglsklknlealdlssnfingslesqgicelkNLFVLNleknniedhlpnclnnmtRLKVLDISfnqlsgsfpsiISNLTSLEYLALfdnnfegtfplsslanhsKLEVLLLSTRNNMLQVQTENFLPTFQlkvlrlpncslnvippfllhqfdlkyldlshndldgafptwalqnntKLEVLLLTNnsftgnlqlpddkhdflhhldissnnftgklpqDMGIILQKLLYMDmsnnhfegNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWlglsdnnfygrifpgymnltQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSnmlsghiphwmGNLSYLEVLLMSKnffegnipvqLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQknslsgpipialfrssnlltldlrdngfsgviphqinecSNLRFLLLRgnnlegqipnqicqltglgmmdlshnkfngsipscftnitlwsvgnldryrleHLTFVERLDVNSIGIYYSSmldmgqlsseergpftFDYLVEVEFVTKnryevyngsnldyMVGLDLSCnkltgeipseigelqeipvlnmshnflsesipesfsnlKMIESLDlshnrlsgqippkltelnfLSNFNVSynnlsglipdkgqfatfdessyrgnlhlcgptinkscngveeipatdsnreegddsAIDMVSLFWSFCA
Flexible Loop (DISEMBL)
MKGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRenniqgsrtkqglsKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIssnnftgklpQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPatdsnreegddsAIDMVSLFWSFCA
Low Complexity Region (SEG)
MKGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSnlrflllrgnnlEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFWSFCA
Disordered region (IsUnstruct)
***YCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQ**********LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE*******NLKMIESLDL****LSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNG******************IDMVSLFWSFC*
Disordered Region (DISOPRED)
********ESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGP****************************MVSLFWSFCA
Disordered Region (DISEMBL)
MKGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFWSFCA
Disordered Region (DISPRO)
*KGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC*****************DSAIDMVSLFWSFCA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGYCFAMESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFWSFCA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	911	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.868	0.633	0.294	9e-73
Q9C9H7	847	Receptor-like protein 12	no	no	0.798	0.858	0.309	1e-72
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.754	0.569	0.319	2e-71
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.754	0.569	0.318	3e-71
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.825	0.600	0.290	1e-68
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.667	0.508	0.313	2e-64
Q9FL28	1173	LRR receptor-like serine/	no	no	0.767	0.595	0.286	2e-62
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.691	0.572	0.314	1e-60
Q9LJF3	1164	Receptor-like protein kin	no	no	0.691	0.541	0.307	1e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.769	0.588	0.293	1e-57

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  275 bits (704), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 272/924 (29%), Positives = 425/924 (45%), Gaps = 133/924 (14%)

Query: 33  GYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTG- 91
           G    +  +   L E+K   +   + Q +DP L  W  D   + + C+W GV C+  TG 
Sbjct: 18  GQPGIINNDLQTLLEVKKSLV--TNPQEDDP-LRQWNSD---NINYCSWTGVTCD-NTGL 70

Query: 92  -RVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVS---LFHPFE-------ELQSLDLSNNS 140
            RVI L L         S  +   D ++ L++S   L  P          L+SL L +N 
Sbjct: 71  FRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQ 130

Query: 141 FEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQ 200
             G   +Q    LGSL  ++ L +G N     I   L  L +L  L L    + G    Q
Sbjct: 131 LTGEIPSQ----LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ 186

Query: 201 GLSKLKNLEALDLSSNFINGSLESQ-GICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKV 259
            L +L  +++L L  N++ G + ++ G C   +L V    +N +   +P  L  +  L++
Sbjct: 187 -LGRLVRVQSLILQDNYLEGPIPAELGNC--SDLTVFTAAENMLNGTIPAELGRLENLEI 243

Query: 260 LDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ 319
           L+++ N L+G  PS +  ++ L+YL+L  N  +G  P  SLA+   L+ L LS  NN+  
Sbjct: 244 LNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIP-KSLADLGNLQTLDLSA-NNLTG 301

Query: 320 VQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKL 379
              E F    QL  L L N                       N L G+ P     NNT L
Sbjct: 302 EIPEEFWNMSQLLDLVLAN-----------------------NHLSGSLPKSICSNNTNL 338

Query: 380 EVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDM-----------------G 422
           E L+L+    +G + +   K   L  LD+S+N+  G +P+ +                 G
Sbjct: 339 EQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEG 398

Query: 423 II------LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS 476
            +      L  L ++ + +N+ EG +   I+ +++L  L L +N FSGE+   +  +C S
Sbjct: 399 TLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI-GNCTS 457

Query: 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS 536
           L  + +  N+F G I P    L +L  L+L  N+  G +   L    +L  L ++ N LS
Sbjct: 458 LKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLS 517

Query: 537 GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT------- 589
           G IP   G L  LE L++  N  +GN+P  L++ R L   ++S N L+G +         
Sbjct: 518 GSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSY 577

Query: 590 -SFNIS----------------SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG 632
            SF+++                +++ L L KN L+G IP  L +   L  LD+  N  +G
Sbjct: 578 LSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTG 637

Query: 633 VIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLW 692
            IP Q+  C  L  + L  N L G IP  + +L+ LG + LS N+F  S+P+   N T  
Sbjct: 638 TIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKL 697

Query: 693 SVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR 752
            V +LD   L      E   + ++G      LD  Q S     P     L ++       
Sbjct: 698 LVLSLDGNSLNGSIPQE---IGNLGALNVLNLDKNQFSGSL--PQAMGKLSKL------- 745

Query: 753 YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEI-PVLNMSHNFLSESIPESFSNLKM 811
           YE            L LS N LTGEIP EIG+LQ++   L++S+N  +  IP +   L  
Sbjct: 746 YE------------LRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSK 793

Query: 812 IESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLC 871
           +E+LDLSHN+L+G++P  + ++  L   NVS+NNL G +  K QF+ +   S+ GN  LC
Sbjct: 794 LETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLC 851

Query: 872 GPTINKSCNGVEEIPATDSNREEG 895
           G  +++ CN V       +N+++G
Sbjct: 852 GSPLSR-CNRVR-----SNNKQQG 869

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  275 bits (704), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 261/844 (30%), Positives = 393/844 (46%), Gaps = 117/844 (13%)

Query: 37  CLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQL 96
           C   +R AL E +  F P   + +   ++  W      S+DCC W GV CN  +G+VI L
Sbjct: 34  CRDDQRDALLEFRGEF-PINASWH---IMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISL 89

Query: 97  LLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL 156
            + +T     +  NY      L  N SLF   + L+ LDL+N +  G    +   +LG+L
Sbjct: 90  DIPNT-----FLNNY------LKTNSSLFK-LQYLRHLDLTNCNLYG----EIPSSLGNL 133

Query: 157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
             L ++NL +N F   I   +  L  L  LIL  NN+        L  L  L  L+L SN
Sbjct: 134 SHLTLVNLYFNKFVGEIPASIGNLNQLRHLIL-ANNVLTGEIPSSLGNLSRLVNLELFSN 192

Query: 217 FINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIIS 276
            + G +    I +LK L  L+L  NN+   +P+ L N++ L  L ++ NQL G  P+ I 
Sbjct: 193 RLVGKIP-DSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIG 251

Query: 277 NLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
           NL  L  ++  +N+  G  P+ S AN +KL + +LS         + NF  TF       
Sbjct: 252 NLIELRVMSFENNSLSGNIPI-SFANLTKLSIFVLS---------SNNFTSTF------- 294

Query: 337 PNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQL 395
                    PF +  F +L+Y D+S+N   G FP  +L     LE + L  N FTG ++ 
Sbjct: 295 ---------PFDMSIFHNLEYFDVSYNSFSGPFPK-SLLLIPSLESIYLQENQFTGPIEF 344

Query: 396 PDDKHDF-LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRF 454
            +      L  L +  N   G +P+ +  +L  L  +D+S+N+F G I  +I+++  L  
Sbjct: 345 ANTSSSTKLQDLILGRNRLHGPIPESISRLLN-LEELDISHNNFTGAIPPTISKLVNLLH 403

Query: 455 LDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGK 514
           LDLSKNN  GE+ A L    + L  + LS N+     F  + N +Q              
Sbjct: 404 LDLSKNNLEGEVPACL----WRLNTMVLSHNS-----FSSFENTSQ-------------- 440

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574
            EE L++     EL ++SN   G IP+ +  LS L  L +S N F G+IP  + N     
Sbjct: 441 -EEALIE-----ELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRN----- 489

Query: 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVI 634
                    SG         S++ L L  N+ SG +P    +++ L++LD+  N   G  
Sbjct: 490 --------FSG---------SIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKF 532

Query: 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694
           P  +  C  L  + +  N ++   P+ +  L  L +++L  NKF G +     +I   S+
Sbjct: 533 PKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSL 592

Query: 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE------ERGPFTFDYLVEVEFV 748
             +D   + H  F   L       Y+S+  DM  L+ E      E   +   Y  E+E V
Sbjct: 593 RIID---ISHNNFSGTLP----PYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMV 645

Query: 749 TKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN 808
            K     +     D+   +D S NK+ G IP  +G L+E+ VLN+S N  +  IP   +N
Sbjct: 646 NKGVDMSFERIRRDFR-AIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLAN 704

Query: 809 LKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNL 868
           L  +E+LD+S N+LSGQIP  L  L+FLS  N S+N L G +P   QF     SS+  N 
Sbjct: 705 LTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNP 764

Query: 869 HLCG 872
            L G
Sbjct: 765 GLYG 768

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  271 bits (694), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 243/760 (31%), Positives = 375/760 (49%), Gaps = 73/760 (9%)

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLK-NLEALDLSSNFING---SLESQGICELK 231
           YL  L++L +L+L+  N+ GS T    S+    L+++DL+ N I+G    + S G+C   
Sbjct: 103 YLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCS-- 160

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMT-RLKVLDISFNQLSGS--FPSIIS-NLTSLEYLALF 287
           NL  LNL KN ++      L   T  L+VLD+S+N +SG   FP + S     LE+ +L 
Sbjct: 161 NLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLK 220

Query: 288 DNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF 347
            N   G+ P     N S L++    + NN   V      P+F+       +CS       
Sbjct: 221 GNKLAGSIPELDFKNLSYLDL----SANNFSTV-----FPSFK-------DCS------- 257

Query: 348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD 407
                +L++LDLS N   G   + +L +  KL  L LTNN F G   +P    + L +L 
Sbjct: 258 -----NLQHLDLSSNKFYGDIGS-SLSSCGKLSFLNLTNNQFVG--LVPKLPSESLQYLY 309

Query: 408 ISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467
           +  N+F G  P  +  + + ++ +D+S N+F G +  S+ E   L  +D+S NNFSG+L 
Sbjct: 310 LRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLP 369

Query: 468 AALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK--KL 525
              L+   ++  + LS N F G +   + NL +L+ L + +N  +G I  G+ K     L
Sbjct: 370 VDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNL 429

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585
             L + +N+  G IP  + N S L  L +S N+  G+IP  L +  +L+   +  N LSG
Sbjct: 430 KVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSG 489

Query: 586 FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNL 644
            +      + ++E+L L  N L+GPIP +L   + L  + L +N  SG IP  +   SNL
Sbjct: 490 EIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNL 549

Query: 645 RFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLE 703
             L L  N++ G IP ++     L  +DL+ N  NGSIP   F      +V  L   R  
Sbjct: 550 AILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYV 609

Query: 704 HLTFVERLDVNSIGIYYSSMLDMGQLSSEE------RGPFTFDYLVEVEFVTKNRYEVYN 757
           ++      + +  G    ++L+ G +  E+      R P  F  +     +T+  +  +N
Sbjct: 610 YIKNDGSKECHGAG----NLLEFGGIRQEQLDRISTRHPCNFTRVYR--GITQPTFN-HN 662

Query: 758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDL 817
           GS    M+ LDLS NKL G IP E+G +  + +LN+ HN LS  IP+    LK +  LDL
Sbjct: 663 GS----MIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDL 718

Query: 818 SHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINK 877
           S+NR +G IP  LT L  L   ++S NNLSG+IP+   F TF +  +  N  LCG  +  
Sbjct: 719 SYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPI 777

Query: 878 SCNGVEEIPATDSN-------REEGDDSAIDMVSLFWSFC 910
            C+     P +D+N       R+     ++ M  LF  FC
Sbjct: 778 PCS---SGPKSDANQHQKSHRRQASLAGSVAMGLLFSLFC 814

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  270 bits (691), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 242/760 (31%), Positives = 374/760 (49%), Gaps = 73/760 (9%)

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLK-NLEALDLSSNFING---SLESQGICELK 231
           YL  L++L +L+L+  N+ GS T    S+    L+++DL+ N I+G    + S G+C   
Sbjct: 103 YLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCS-- 160

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMT-RLKVLDISFNQLSGS--FPSIIS-NLTSLEYLALF 287
           NL  LNL KN ++      L   T  L+VLD+S+N +SG   FP + S     LE+ ++ 
Sbjct: 161 NLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIK 220

Query: 288 DNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF 347
            N   G+ P     N S L++    + NN   V      P+F+       +CS       
Sbjct: 221 GNKLAGSIPELDFKNLSYLDL----SANNFSTV-----FPSFK-------DCS------- 257

Query: 348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD 407
                +L++LDLS N   G   + +L +  KL  L LTNN F G   +P    + L +L 
Sbjct: 258 -----NLQHLDLSSNKFYGDIGS-SLSSCGKLSFLNLTNNQFVG--LVPKLPSESLQYLY 309

Query: 408 ISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467
           +  N+F G  P  +  + + ++ +D+S N+F G +  S+ E   L  +D+S NNFSG+L 
Sbjct: 310 LRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLP 369

Query: 468 AALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK--KL 525
              L    ++  + LS N F G +   + NL +L+ L + +N  +G I  G+ K     L
Sbjct: 370 VDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNL 429

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585
             L + +N+  G IP  + N S L  L +S N+  G+IP  L +  +L+   +  N LSG
Sbjct: 430 KVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSG 489

Query: 586 FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNL 644
            +      + ++E+L L  N L+GPIP +L   + L  + L +N  SG IP  +   SNL
Sbjct: 490 EIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNL 549

Query: 645 RFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLE 703
             L L  N++ G IP ++     L  +DL+ N  NGSIP   F      +V  L   R  
Sbjct: 550 AILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYV 609

Query: 704 HLTFVERLDVNSIGIYYSSMLDMGQLSSEE------RGPFTFDYLVEVEFVTKNRYEVYN 757
           ++      + +  G    ++L+ G +  E+      R P  F  +     +T+  +  +N
Sbjct: 610 YIKNDGSKECHGAG----NLLEFGGIRQEQLDRISTRHPCNFTRVYR--GITQPTFN-HN 662

Query: 758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDL 817
           GS    M+ LDLS NKL G IP E+G +  + +LN+ HN LS  IP+    LK +  LDL
Sbjct: 663 GS----MIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDL 718

Query: 818 SHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINK 877
           S+NR +G IP  LT L  L   ++S NNLSG+IP+   F TF +  +  N  LCG  +  
Sbjct: 719 SYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPL 777

Query: 878 SCNGVEEIPATDSN-------REEGDDSAIDMVSLFWSFC 910
            C+     P +D+N       R+     ++ M  LF  FC
Sbjct: 778 PCS---SGPKSDANQHQKSHRRQASLAGSVAMGLLFSLFC 814

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  261 bits (668), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 260/895 (29%), Positives = 402/895 (44%), Gaps = 143/895 (15%)

Query: 55  FMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLN----------DTSKF 104
           F+    E+ VL  W + G  S   CNW GV C      +I L L+             +F
Sbjct: 40  FITNPKEEDVLRDW-NSG--SPSYCNWTGVTCGGR--EIIGLNLSGLGLTGSISPSIGRF 94

Query: 105 -----IEYSKNYTYGDM-------------------VLSLNV-SLFHPFEELQSLDLSNN 139
                I+ S N   G +                   +LS ++ S       L+SL L +N
Sbjct: 95  NNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDN 154

Query: 140 SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTK 199
              G       +T G+L  L++L L        I      L  L TLIL++N ++G    
Sbjct: 155 ELNGTIP----ETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPA 210

Query: 200 Q-----------------------GLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
           +                        L++LKNL+ L+L  N  +G + SQ + +L ++  L
Sbjct: 211 EIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQ-LGDLVSIQYL 269

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           NL  N ++  +P  L  +  L+ LD+S N L+G        +  LE+L L  N   G+ P
Sbjct: 270 NLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLP 329

Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPT-----FQLKVLRLPNCSL-NVIPPFLLH 350
            +  +N++ L+ L LS      + Q    +P        LK+L L N +L   IP  L  
Sbjct: 330 KTICSNNTSLKQLFLS------ETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQ 383

Query: 351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS- 409
             +L  L L++N L+G   + ++ N T L+   L +N+  G  ++P +   FL  L+I  
Sbjct: 384 LVELTNLYLNNNSLEGTLSS-SISNLTNLQEFTLYHNNLEG--KVPKEI-GFLGKLEIMY 439

Query: 410 --SNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467
              N F+G++P ++G    +L  +D   N   G I SSI  +K+L  L L +N   G + 
Sbjct: 440 LYENRFSGEMPVEIGNC-TRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP 498

Query: 468 AALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVE 527
           A+L  +C  +  + L+DN   G I   +  LT L+   + NN   G + + L+  K L  
Sbjct: 499 ASL-GNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTR 557

Query: 528 LRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFM 587
           +  SSN  +G I    G+ SYL    +++N FEG+IP++L     L    + +N  +G +
Sbjct: 558 INFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRI 616

Query: 588 TTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRF 646
             +F  IS +  L + +NSLSG IP+ L     L  +DL +N  SGVIP  + +   L  
Sbjct: 617 PRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGE 676

Query: 647 LLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLT 706
           L L  N   G +P +I  LT +  + L  N  NGSIP    N+   +  NL+  +L    
Sbjct: 677 LKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLS--- 733

Query: 707 FVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVG 766
                                       GP                        L  +  
Sbjct: 734 ----------------------------GPLPSTI-----------------GKLSKLFE 748

Query: 767 LDLSCNKLTGEIPSEIGELQEI-PVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
           L LS N LTGEIP EIG+LQ++   L++S+N  +  IP + S L  +ESLDLSHN+L G+
Sbjct: 749 LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGE 808

Query: 826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCN 880
           +P ++ ++  L   N+SYNNL G +  K QF+ +   ++ GN  LCG  ++  CN
Sbjct: 809 VPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSH-CN 860

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  248 bits (632), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 231/736 (31%), Positives = 345/736 (46%), Gaps = 128/736 (17%)

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFING---SLESQGICELKNLFVLNLEKNNIE 244
           L  ++I GS +  G     +L +LDLS N ++G   +L S G C    L  LN+  N ++
Sbjct: 106 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS--GLKFLNVSSNTLD 161

Query: 245 DHLPNCLNN---MTRLKVLDISFNQLSGS--FPSIISN-LTSLEYLALFDNNFEGTFPLS 298
              P  ++    +  L+VLD+S N +SG+     ++S+    L++LA+  N   G   +S
Sbjct: 162 --FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 219

Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLD 358
              N   LE L +S+ N             F   +  L +CS             L++LD
Sbjct: 220 RCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQHLD 251

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP 418
           +S N L G F + A+   T+L++L +++N F G   +P      L +L ++ N FTG++P
Sbjct: 252 ISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIP 308

Query: 419 QDMGIILQKLLYMDMSNNHFEGNIA-------------------------SSIAEMKELR 453
             +      L  +D+S NHF G +                           ++ +M+ L+
Sbjct: 309 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 368

Query: 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ-----LQYLYLEN 508
            LDLS N FSGEL  +L     SLL L LS NNF G I P   NL Q     LQ LYL+N
Sbjct: 369 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQN 425

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
           N F+GKI   L    +LV L +S N LSG IP  +G+LS L  L +  N  EG IP +L+
Sbjct: 426 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 485

Query: 569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN 628
                                   + ++E L L  N L+G IP  L   +NL  + L +N
Sbjct: 486 Y-----------------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 522

Query: 629 GFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN 688
             +G IP  I    NL  L L  N+  G IP ++     L  +DL+ N FNG+IP+    
Sbjct: 523 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 582

Query: 689 ITLWSVGNL---DRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE------RGPFTF 739
            +     N     RY      +++   +        ++L+   + SE+      R P   
Sbjct: 583 QSGKIAANFIAGKRY-----VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN- 636

Query: 740 DYLVEVEFVTKNRYEVYNGSNLD---YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN 796
                   +T   Y  +     D    M+ LD+S N L+G IP EIG +  + +LN+ HN
Sbjct: 637 --------ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 688

Query: 797 FLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQF 856
            +S SIP+   +L+ +  LDLS N+L G+IP  ++ L  L+  ++S NNLSG IP+ GQF
Sbjct: 689 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 748

Query: 857 ATFDESSYRGNLHLCG 872
            TF  + +  N  LCG
Sbjct: 749 ETFPPAKFLNNPGLCG 764

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 244/853 (28%), Positives = 370/853 (43%), Gaps = 154/853 (18%)

Query: 62  DP--VLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLS 119
           DP  VL+ W   G +    CNW G+ C++T G V+                         
Sbjct: 44  DPLGVLSDWTIIGSLRH--CNWTGITCDST-GHVV------------------------- 75

Query: 120 LNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNA 179
                        S+ L     EGV        + +L  L++L+L  N F   I   +  
Sbjct: 76  -------------SVSLLEKQLEGVLS----PAIANLTYLQVLDLTSNSFTGKIPAEIGK 118

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239
           LT L  LIL  N   GS    G+ +LKN+  LDL +N ++G +  + IC+  +L ++  +
Sbjct: 119 LTELNQLILYLNYFSGS-IPSGIWELKNIFYLDLRNNLLSGDVPEE-ICKTSSLVLIGFD 176

Query: 240 KNNIEDHLPNCLNNMTRLKV------------------------LDISFNQLSGSFPSII 275
            NN+   +P CL ++  L++                        LD+S NQL+G  P   
Sbjct: 177 YNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF 236

Query: 276 SNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF-QLKVL 334
            NL +L+ L L +N  EG  P + + N S L  + L   +N L  +    L    QL+ L
Sbjct: 237 GNLLNLQSLVLTENLLEGDIP-AEIGNCSSL--VQLELYDNQLTGKIPAELGNLVQLQAL 293

Query: 335 RL-PNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNL 393
           R+  N   + IP  L     L +L LS N L G   +  +     LEVL L +N+FTG  
Sbjct: 294 RIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPI-SEEIGFLESLEVLTLHSNNFTGEF 352

Query: 394 QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR 453
                    L  L +  NN +G+LP D+G+ L  L  +   +N   G I SSI+    L+
Sbjct: 353 PQSITNLRNLTVLTVGFNNISGELPADLGL-LTNLRNLSAHDNLLTGPIPSSISNCTGLK 411

Query: 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG 513
            LDLS N  +GE+         +L ++ +  N+F G I     N + L+ L + +N  +G
Sbjct: 412 LLDLSHNQMTGEIPRGF--GRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTG 469

Query: 514 KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRL 573
            ++  + K +KL  L++S N L+G IP  +GNL  L +L +  N F G IP ++ N   L
Sbjct: 470 TLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLL 529

Query: 574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV 633
           Q                        L +  N L GPIP  +F    L  LDL +N FSG 
Sbjct: 530 Q-----------------------GLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQ 566

Query: 634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWS 693
           IP   ++  +L +L L+GN   G IP  +  L+ L   D+S N   G+IP       L S
Sbjct: 567 IPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGEL----LAS 622

Query: 694 VGNLDRY--------------RLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739
           + N+  Y               L  L  V+ +D+++  ++  S+    Q     +  FT 
Sbjct: 623 LKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSN-NLFSGSIPRSLQAC---KNVFTL 678

Query: 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS 799
           D+  +         EV+ G  +D ++ L+LS N  +GEIP   G +  +  L++S N L+
Sbjct: 679 DF-SQNNLSGHIPDEVFQG--MDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLT 735

Query: 800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATF 859
             IPES +NL  ++ L L+                         NNL G +P+ G F   
Sbjct: 736 GEIPESLANLSTLKHLKLAS------------------------NNLKGHVPESGVFKNI 771

Query: 860 DESSYRGNLHLCG 872
           + S   GN  LCG
Sbjct: 772 NASDLMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  235 bits (599), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 221/702 (31%), Positives = 333/702 (47%), Gaps = 72/702 (10%)

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239
           L ++T++ L   N+ G+ +   + KL  L  L++S+NFI+G +  Q +   ++L VL+L 
Sbjct: 66  LRTVTSVDLNGMNLSGTLSPL-ICKLHGLRKLNVSTNFISGPI-PQDLSLCRSLEVLDLC 123

Query: 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSS 299
            N     +P  L  +  LK L +  N L GS P  I NL+SL+ L ++ NN  G  P  S
Sbjct: 124 TNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIP-PS 182

Query: 300 LANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLD 358
           +A   +L ++  + RN    V          LKVL L    L    P  L +  +L  L 
Sbjct: 183 MAKLRQLRIIR-AGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLI 241

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP 418
           L  N L G  P  ++ N ++LEVL L  N FTG++     K   +  L + +N  TG++P
Sbjct: 242 LWQNRLSGEIPP-SVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIP 300

Query: 419 QDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLL 478
           +++G ++     +D S N   G I      +  L+ L L +N   G +   L        
Sbjct: 301 REIGNLIDAA-EIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPREL-------- 351

Query: 479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGH 538
                              LT L+ L L  N+ +G I + L     LV+L++  N L G 
Sbjct: 352 -----------------GELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGK 394

Query: 539 IPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI-SSVE 597
           IP  +G  S   VL MS N   G IP      + L L S+  N LSG +        S+ 
Sbjct: 395 IPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLT 454

Query: 598 HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ 657
            L L  N L+G +PI LF   NL  L+L  N  SG I   + +  NL  L L  NN  G+
Sbjct: 455 KLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGE 514

Query: 658 IPNQICQLTGLGMMDLSHNKFNGSIP----SCFTNITLWSVGNLDRYRLEHLTFVERLDV 713
           IP +I  LT +   ++S N+  G IP    SC T                    ++RLD+
Sbjct: 515 IPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT--------------------IQRLDL 554

Query: 714 NSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRY--EV-YNGSNLDYMVGLDLS 770
           +  G  +S  +      ++E G   +   +E+  ++ NR   E+ ++  +L  ++ L L 
Sbjct: 555 S--GNKFSGYI------AQELGQLVY---LEILRLSDNRLTGEIPHSFGDLTRLMELQLG 603

Query: 771 CNKLTGEIPSEIGELQEIPV-LNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK 829
            N L+  IP E+G+L  + + LN+SHN LS +IP+S  NL+M+E L L+ N+LSG+IP  
Sbjct: 604 GNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPAS 663

Query: 830 LTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLC 871
           +  L  L   N+S NNL G +PD   F   D S++ GN  LC
Sbjct: 664 IGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 216/703 (30%), Positives = 331/703 (47%), Gaps = 73/703 (10%)

Query: 210 ALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG 269
            LDL +  + G+L    +  L NL  L L+ NN      +  ++   L+VLD+S N L+ 
Sbjct: 80  GLDLRNGGLTGTLNLNNLTALSNLRSLYLQGNNFSSGD-SSSSSGCSLEVLDLSSNSLTD 138

Query: 270 S--FPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLP 327
           S     + S   +L  +    N   G    S  A++ ++  + LS  N       E F+ 
Sbjct: 139 SSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSN-NRFSDEIPETFIA 197

Query: 328 TFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNN 387
            F       PN               LK+LDLS N++ G F   +      L V  L+ N
Sbjct: 198 DF-------PN--------------SLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQN 236

Query: 388 SFTGN---LQLPDDKHDFLHHLDISSNNFTGKLP-QDMGIILQKLLYMDMSNNHFEGNIA 443
           S +G+   + L + K   L  L++S N+  GK+P  D     Q L  + +++N + G I 
Sbjct: 237 SISGDRFPVSLSNCK--LLETLNLSRNSLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEIP 294

Query: 444 SSIAEM-KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMN-LTQL 501
             ++ + + L  LDLS N+ +G+L  +  TSC SL  L L +N   G      ++ L+++
Sbjct: 295 PELSLLCRTLEVLDLSGNSLTGQLPQSF-TSCGSLQSLNLGNNKLSGDFLSTVVSKLSRI 353

Query: 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNL---SYLEVLLMSKNF 558
             LYL  N  SG +   L     L  L +SSN  +G +P    +L   S LE LL++ N+
Sbjct: 354 TNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNY 413

Query: 559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS-FNISSVEHLYLQKNSLSGPIPIAL-FR 616
             G +PV+L   + L+   +S N L+G +    + +  +  L +  N+L+G IP ++   
Sbjct: 414 LSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVD 473

Query: 617 SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
             NL TL L +N  +G +P  I++C+N+ ++ L  N L G+IP  I +L  L ++ L +N
Sbjct: 474 GGNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNN 533

Query: 677 KFNGSIPSCFTNIT--LWS-------VGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMG 727
              G+IPS   N    +W         GNL          V    V+  G  ++ + + G
Sbjct: 534 SLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVS--GKQFAFVRNEG 591

Query: 728 QLSSEERGPFTFDYLVEVEFVTKNRYE------------VYNGSNL------DYMVGLDL 769
                  G      LVE E +   R E            +Y+G  +        M+ LDL
Sbjct: 592 GTDCRGAGG-----LVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDL 646

Query: 770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK 829
           S N ++G IP   G +  + VLN+ HN L+ +IP+SF  LK I  LDLSHN L G +P  
Sbjct: 647 SYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGS 706

Query: 830 LTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCG 872
           L  L+FLS+ +VS NNL+G IP  GQ  TF  + Y  N  LCG
Sbjct: 707 LGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCG 749

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 227/773 (29%), Positives = 339/773 (43%), Gaps = 72/773 (9%)

Query: 146 ENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKL 205
             Q    + SLK L+ L L  N F   I   +  L  L TL L  N++ G   +  LS+L
Sbjct: 78  RGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRL-LSEL 136

Query: 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
             L  LDLS N  +GSL       L  L  L++  N++   +P  +  ++ L  L +  N
Sbjct: 137 PQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLN 196

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFP--LSSLANHSKLEVLLLSTRNNMLQVQTE 323
             SG  PS I N++ L+  A     F G  P  +S L + +KL++    + N +     +
Sbjct: 197 SFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDL----SYNPLKCSIPK 252

Query: 324 NFLPTFQLKVLRLPNCSL-NVIPPFLLHQFDLKYLDLSHNDLDGAFP---------TWAL 373
           +F     L +L L +  L  +IPP L +   LK L LS N L G  P         T++ 
Sbjct: 253 SFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSA 312

Query: 374 QNN-------------TKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQD 420
           + N               L+ LLL NN F+G +    +    L HL ++SN  +G +P++
Sbjct: 313 ERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRE 372

Query: 421 MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWL 480
           +      L  +D+S N   G I         L  L L+ N  +G +   L      L+ L
Sbjct: 373 L-CGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWK--LPLMAL 429

Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
            L  NNF G I       T L       N+  G +   +  +  L  L +S N L+G IP
Sbjct: 430 DLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIP 489

Query: 541 HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFN-ISSVEHL 599
             +G L+ L VL ++ N F+G IPV+L +   L    +  N L G +      ++ ++ L
Sbjct: 490 REIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCL 549

Query: 600 YLQKNSLSGPIPI---ALFRSSNLLTL---------DLRDNGFSGVIPHQINECSNLRFL 647
            L  N+LSG IP    A F    +  L         DL  N  SG IP ++ EC  L  +
Sbjct: 550 VLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEI 609

Query: 648 LLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLE-HLT 706
            L  N+L G+IP  + +LT L ++DLS N   GSIP    N       NL   +L  H+ 
Sbjct: 610 SLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIP 669

Query: 707 FVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVG 766
                   S G+   S++ +    ++  GP                       NL  +  
Sbjct: 670 -------ESFGLL-GSLVKLNLTKNKLDGPVPASL-----------------GNLKELTH 704

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
           +DLS N L+GE+ SE+  ++++  L +  N  +  IP    NL  +E LD+S N LSG+I
Sbjct: 705 MDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEI 764

Query: 827 PPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC 879
           P K+  L  L   N++ NNL G +P  G      ++   GN  LCG  +   C
Sbjct: 765 PTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDC 817

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	911
12324907	910	putative disease resistance protein; 468	0.936	0.937	0.446	0.0
297842171	966	leucine-rich repeat family protein [Arab	0.953	0.899	0.436	0.0
15221162	965	receptor like protein 15 [Arabidopsis th	0.954	0.901	0.428	0.0
358345693	1011	Receptor-like protein kinase [Medicago t	0.930	0.838	0.417	1e-179
357468861	1016	Receptor-like protein kinase [Medicago t	0.930	0.834	0.417	1e-179
12323813	951	disease resistance protein, putative; 63	0.957	0.916	0.439	1e-177
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.957	0.849	0.416	1e-177
334183409	932	receptor like protein 9 [Arabidopsis tha	0.934	0.913	0.422	1e-175
240254367	976	receptor like protein 14 [Arabidopsis th	0.944	0.881	0.421	1e-175
358345471	933	Receptor kinase [Medicago truncatula] gi	0.907	0.886	0.438	1e-175

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/902 (44%), Positives = 570/902 (63%), Gaps = 49/902 (5%)

Query: 28  LNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCN 87
           + Q+HGYK+C+  E+ AL E++   I   +++    VL TW +D   +SDCC WKGV CN
Sbjct: 1   MGQLHGYKSCIDEEKIALFELRKHMISRTESE---SVLPTWTND--TTSDCCRWKGVACN 55

Query: 88  ATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLS----LNVSLFHPFEELQSLDLSNNSFEG 143
             +GRV ++               ++G + L     LN+SL HPFE+++SL+LS++   G
Sbjct: 56  RVSGRVTEI---------------SFGGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSG 100

Query: 144 VYEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGL 202
           ++++ + Y +L  L++L+IL+L  N F++SIF +L+A TSLTTL LR NN+ GS   + L
Sbjct: 101 LFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKEL 160

Query: 203 SKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI 262
             L NLE LDLS N  NGS+  QGICEL N+  L+L +N +  HLP+CL ++T L+VLD+
Sbjct: 161 RDLTNLELLDLSRNRFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDL 220

Query: 263 SFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQT 322
           S N+L+G+ PS + +L SLEYL+LFDN+FEG+F   SLAN S L VL L ++++ LQV +
Sbjct: 221 SSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLS 280

Query: 323 E-NFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEV 381
           E ++ P FQL V+ L +C++  +P FLLHQ DL+++DLS N++ G  P+W L NNTKL+V
Sbjct: 281 ESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKV 340

Query: 382 LLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGN 441
           LLL NN FT + Q+P   H+ L  LD+S+N+F    P+++G I   L Y++ S N+F+ N
Sbjct: 341 LLLQNNLFT-SFQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQEN 398

Query: 442 IASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQL 501
           + SS+  M  ++++DLS+N+F G L  + +  C+S+  L LS N   G IFP   N T +
Sbjct: 399 LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNI 458

Query: 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG 561
             L+++NN F+GKI +GL     L  L MS+N L+G IP W+G L  L  LL+S NF +G
Sbjct: 459 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 518

Query: 562 NIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLL 621
           +IP+ L N   LQL  +S N LSG +    +  +   L LQ N LSG IP  L   +N+ 
Sbjct: 519 DIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVE 576

Query: 622 TLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS 681
            LDLR+N FSG IP  IN   N+  LLLRGNN  GQIP+Q+C L+ + ++DLS+N+ NG+
Sbjct: 577 ILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGT 635

Query: 682 IPSCFTNITLWSVGNLDRYRLEH-LTFVERL--------DVNS---IGIYYSSMLDMGQL 729
           IPSC +N +         Y  +  ++F   +        D +S    GIY+ S+L +  L
Sbjct: 636 IPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPL 695

Query: 730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIP 789
           S + +         ++EF TK+RY+ Y G NL  + G+DLS N+L+GEIP E G L E+ 
Sbjct: 696 SMDYKAATQ----TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELR 751

Query: 790 VLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
            LN+SHN LS  IP+S S+++ +ES DLS NRL G+IP +LTEL  LS F VS+NNLSG+
Sbjct: 752 ALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGV 811

Query: 850 IPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFWSF 909
           IP   QF TFD  SY GN  LCG   N+SCN      A   N  E D+S IDMVS + SF
Sbjct: 812 IPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEA--DNGVEADESIIDMVSFYLSF 869

Query: 910 CA 911
            A
Sbjct: 870 AA 871

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/964 (43%), Positives = 584/964 (60%), Gaps = 95/964 (9%)

Query: 8   MESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLAT 67
           ME   F+  +LI    +M+++ Q+HGYK+C+  ER AL E++ + I   +    D VL T
Sbjct: 1   MEGKVFLGQNLI---WVMLLMGQLHGYKSCIDKERNALFELRKYMISRTEEDQSDSVLPT 57

Query: 68  WVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLS----LNVS 123
           W +D   +SDCC WKGV CN  +GRV ++                +G + L     LN+S
Sbjct: 58  WTND--TTSDCCRWKGVACNRVSGRVTEI---------------AFGGLSLKDNSLLNLS 100

Query: 124 LFHPFEELQSLDLSNNSFEGVYEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTS 182
           L HPFE+++SL+LS++ F G++++ + Y +L  L++L+IL+L  N F++SIF +L+A TS
Sbjct: 101 LLHPFEDVRSLNLSSSRFSGLFDDVEGYKSLRRLRKLEILDLSSNKFNNSIFHFLSAATS 160

Query: 183 LTTLILRENNIQGS------------------RTK-------QGLSKLKNLEALDLSSNF 217
           LTTL LR NN+ GS                  R +       Q LS L+ L+ALDLS N 
Sbjct: 161 LTTLFLRSNNMVGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNE 220

Query: 218 INGSLESQG-------------ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
            +GS+E QG             ICELKN   L+L +N +  H P+CL ++T L+VLD+S 
Sbjct: 221 FSGSMELQGKFSTNLQEWCIHGICELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSS 280

Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN 324
           NQL+G+ PS + +L SLEYL+LFDN+FEG+F   SLAN S L VL L ++++ LQV +E+
Sbjct: 281 NQLTGTVPSTLGSLPSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSES 340

Query: 325 -FLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLL 383
            + P FQL V+ L +C++  +P FL+HQ DL+++DLS+N + G  P+W L NNTKL+VLL
Sbjct: 341 SWKPKFQLSVIALRSCNMEKVPHFLIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLL 400

Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
           L NN FT + Q+P   HD L  LD S+N F    P+++G I   L YM++  N F+GN+ 
Sbjct: 401 LQNNFFT-SFQIPKSAHDLLF-LDASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLP 458

Query: 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503
           SS+  MK L++LDLS N+F G+L  + +  C+S+  L LS N   G IFP   NLT L  
Sbjct: 459 SSLGNMKGLQYLDLSHNSFHGKLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNLTSLLG 518

Query: 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563
           L+++NN F+GKI +GL     L  L MS+N L+G IP W+G L  L  LL+S NF +G I
Sbjct: 519 LFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGEI 578

Query: 564 PVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTL 623
           P  L N   LQL  +S N LSG +    +      L LQ N+LSG I   L    N+  L
Sbjct: 579 PTSLFNKSSLQLLDLSTNSLSGGIPPHHDSRDGVVLLLQDNNLSGTIADTLL--VNVEIL 636

Query: 624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
           DLR+N FSG IP  IN   N+  LLLRGN L G+IP+Q+C L+ + ++DLS+N+ NGSIP
Sbjct: 637 DLRNNRFSGNIPEFIN-TQNISILLLRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIP 695

Query: 684 SCFTNITLWSVGNLDRYRLEH-LTFVERL--------DVNS---IGIYYSSMLDMGQLSS 731
           SC +N +         Y  +  ++F   +        D++S    GIY+ S+L +     
Sbjct: 696 SCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDLSSNKNSGIYFKSLLMLD---- 751

Query: 732 EERGPFTFDYLV----EVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQE 787
               PF+ DY      ++EF TK+RY+ Y G NL  + G+DLS N+L+GEIP E G L E
Sbjct: 752 ----PFSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGIDLSENELSGEIPVEFGGLLE 807

Query: 788 IPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLS 847
           +  LN+SHN LS  IP+S S+++ +ES DLS NRL G+IP +LTEL  LS F VS+NNLS
Sbjct: 808 LRALNLSHNNLSGVIPKSLSSMEKMESFDLSFNRLQGRIPAQLTELTSLSVFKVSHNNLS 867

Query: 848 GLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFW 907
           G+IP+  QF TFD  SY GN  LCG   N+SCN      A D    E ++S IDM S +W
Sbjct: 868 GVIPEGRQFNTFDAESYLGNRLLCGQPTNRSCNNNSFEEADD--EVEDNESTIDMESFYW 925

Query: 908 SFCA 911
           SF A
Sbjct: 926 SFGA 929

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/960 (42%), Positives = 586/960 (61%), Gaps = 90/960 (9%)

Query: 8   MESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLAT 67
           ME   F+  +LI    +M+++ Q+HGYK+C+  E+ AL E++   I   +++    VL T
Sbjct: 1   MEGKVFLGHNLI---WVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTESE---SVLPT 54

Query: 68  WVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLS----LNVS 123
           W +D   +SDCC WKGV CN  +GRV ++               ++G + L     LN+S
Sbjct: 55  WTND--TTSDCCRWKGVACNRVSGRVTEI---------------SFGGLSLKDNSLLNLS 97

Query: 124 LFHPFEELQSLDLSNNSFEGVYEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTS 182
           L HPFE+++SL+LS++   G++++ + Y +L  L++L+IL+L  N F++SIF +L+A TS
Sbjct: 98  LLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATS 157

Query: 183 LTTLILRENNIQGS------------------RTK-------QGLSKLKNLEALDLSSNF 217
           LTTL LR NN+ GS                  R +       Q LS L+ L+ALDLS N 
Sbjct: 158 LTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNE 217

Query: 218 INGSLESQG-------------ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
            +GS+E QG             ICEL N+  L+L +N +  HLP+CL ++T L+VLD+S 
Sbjct: 218 FSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSS 277

Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN 324
           N+L+G+ PS + +L SLEYL+LFDN+FEG+F   SLAN S L VL L ++++ LQV +E+
Sbjct: 278 NKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSES 337

Query: 325 -FLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLL 383
            + P FQL V+ L +C++  +P FLLHQ DL+++DLS N++ G  P+W L NNTKL+VLL
Sbjct: 338 SWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLL 397

Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
           L NN FT + Q+P   H+ L  LD+S+N+F    P+++G I   L Y++ S N+F+ N+ 
Sbjct: 398 LQNNLFT-SFQIPKSAHNLLF-LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLP 455

Query: 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503
           SS+  M  ++++DLS+N+F G L  + +  C+S+  L LS N   G IFP   N T +  
Sbjct: 456 SSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILG 515

Query: 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563
           L+++NN F+GKI +GL     L  L MS+N L+G IP W+G L  L  LL+S NF +G+I
Sbjct: 516 LFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDI 575

Query: 564 PVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTL 623
           P+ L N   LQL  +S N LSG +    +  +   L LQ N LSG IP  L   +N+  L
Sbjct: 576 PMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVEIL 633

Query: 624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
           DLR+N FSG IP  IN   N+  LLLRGNN  GQIP+Q+C L+ + ++DLS+N+ NG+IP
Sbjct: 634 DLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIP 692

Query: 684 SCFTNITLWSVGNLDRYRLEH-LTFVERL--------DVNS---IGIYYSSMLDMGQLSS 731
           SC +N +         Y  +  ++F   +        D +S    GIY+ S+L +  LS 
Sbjct: 693 SCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSM 752

Query: 732 EERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVL 791
           + +         ++EF TK+RY+ Y G NL  + G+DLS N+L+GEIP E G L E+  L
Sbjct: 753 DYKAATQ----TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRAL 808

Query: 792 NMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
           N+SHN LS  IP+S S+++ +ES DLS NRL G+IP +LTEL  LS F VS+NNLSG+IP
Sbjct: 809 NLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIP 868

Query: 852 DKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSAIDMVSLFWSFCA 911
              QF TFD  SY GN  LCG   N+SCN      A   N  E D+S IDMVS + SF A
Sbjct: 869 QGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEA--DNGVEADESIIDMVSFYLSFAA 926

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 411/984 (41%), Positives = 570/984 (57%), Gaps = 136/984 (13%)

Query: 14  IKLSLISS-----VILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPV--LA 66
           +KL LI+S     V LM++L Q  G   CL+ ER +L EIK +F+    +Q  DP   L 
Sbjct: 1   MKLGLINSFLLYFVTLMLMLTQ--GCNGCLEKERISLLEIKHYFL----SQTGDPYNKLG 54

Query: 67  TWVDDGGMSSDCCNWKGVRC-NATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLF 125
           +WVDD    S+CC+W  V+C N ++G +I+L +      I +          + LNVSLF
Sbjct: 55  SWVDD--RDSNCCSWNNVKCSNISSGHIIELSIRKLLFDIPFD---------MKLNVSLF 103

Query: 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTT 185
            PF+EL+ LDLS NSF G   N+ +     LKRL+ L+L  NY + SI   L  LT+LTT
Sbjct: 104 RPFKELRLLDLSYNSFLGWIGNEGFP---RLKRLETLDLSGNYLNSSILPSLKGLTALTT 160

Query: 186 LILRENNIQG------SRTKQ--------------------------------------- 200
           L L  N+++       SR+K+                                       
Sbjct: 161 LKLVSNSMENFSAQGFSRSKELEVLDLSGNRLNCNIITSLHGFTSLRSLILSYNNFNCSL 220

Query: 201 ---GLSKLKNLEALDLSSNFINGSLESQ-------------------GICELKNLFVLNL 238
                +K   LE LDL  N   GSL  +                   G+C  K+L  L++
Sbjct: 221 STLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNLKMLSLNDNQMNGLCNFKDLVELDI 280

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
            KN     LP+CL+N+T L+VL++S N  SG+FPS ISNLTSL YL+ + N  +G+F LS
Sbjct: 281 SKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFSLS 340

Query: 299 SLANHSKLEVLLLSTRNNM-LQVQTEN--FLPTFQLKVLRLPNCSLN-----VIPPFLLH 350
           +LANHS LEVL +S++NN+ + ++TE   + P FQLK L + NC+LN     VIP FL +
Sbjct: 341 TLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTFLSY 400

Query: 351 QFDLKYLDLSHNDLDGAFPT-WALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS 409
           Q++L YL LS N+++G+ P+ W + N                         D + +LDIS
Sbjct: 401 QYNLVYLVLSSNNINGSLPSNWLIHN-------------------------DDMIYLDIS 435

Query: 410 SNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAA 469
           +NN +G LP+D+GI L  + Y++ S N FEGNI SSI +MK+L+ LD S+N+FSGEL   
Sbjct: 436 NNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQ 495

Query: 470 LLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR 529
           L T C +L +L LS+N  +G I P + N   +  L+L NN FSG +E+ L  + +L  L 
Sbjct: 496 LATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLS 554

Query: 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT 589
           +S+N  SG IP  +G  S +  LLMSKN  EG IP+++ +  RLQ+  +S+N L+G +  
Sbjct: 555 ISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPP 614

Query: 590 SFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL 649
              ++ +  LYLQ+N LSG IP  L+    L  LDLR+N FSG IP+ +++ S LR LLL
Sbjct: 615 LSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVLLL 674

Query: 650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR-YRLEHLTFV 708
            GNN EG+IP Q+C+L  + +MDLS N  N SIPSCF N+       +D  + L  + + 
Sbjct: 675 GGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSSILYG 734

Query: 709 ERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL-VEVEFVTKNRYEVYNGSNLDYMVGL 767
           +   +     ++ S L +      E+     D L +EVEF TK+    Y G  L+ M GL
Sbjct: 735 QH--IQDTHYFFDSSLSIDL--PLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMTGL 790

Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
           DLSCNKLTG IPS+IG+LQ+I  LN+SHN LS  IP +FSNL  IESLDLS+N LSG+IP
Sbjct: 791 DLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIP 850

Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPA 887
            +LT+LNFLS FNVSYNNLSG  P  GQFA FDE +YRGN  LCGP +++ C  VE  P+
Sbjct: 851 NELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPPPS 910

Query: 888 TDSNREEGDDSAIDMVSLFWSFCA 911
           + SN  E +++ +DM++ +WSF A
Sbjct: 911 SQSNDNEEEETGVDMITFYWSFTA 934

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 411/984 (41%), Positives = 570/984 (57%), Gaps = 136/984 (13%)

Query: 14  IKLSLISS-----VILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPV--LA 66
           +KL LI+S     V LM++L Q  G   CL+ ER +L EIK +F+    +Q  DP   L 
Sbjct: 1   MKLGLINSFLLYFVTLMLMLTQ--GCNGCLEKERISLLEIKHYFL----SQTGDPYNKLG 54

Query: 67  TWVDDGGMSSDCCNWKGVRC-NATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLF 125
           +WVDD    S+CC+W  V+C N ++G +I+L +      I +          + LNVSLF
Sbjct: 55  SWVDD--RDSNCCSWNNVKCSNISSGHIIELSIRKLLFDIPFD---------MKLNVSLF 103

Query: 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTT 185
            PF+EL+ LDLS NSF G   N+ +     LKRL+ L+L  NY + SI   L  LT+LTT
Sbjct: 104 RPFKELRLLDLSYNSFLGWIGNEGFP---RLKRLETLDLSGNYLNSSILPSLKGLTALTT 160

Query: 186 LILRENNIQG------SRTKQ--------------------------------------- 200
           L L  N+++       SR+K+                                       
Sbjct: 161 LKLVSNSMENFSAQGFSRSKELEVLDLSGNRLNCNIITSLHGFTSLRSLILSYNNFNCSL 220

Query: 201 ---GLSKLKNLEALDLSSNFINGSLESQ-------------------GICELKNLFVLNL 238
                +K   LE LDL  N   GSL  +                   G+C  K+L  L++
Sbjct: 221 STLDFAKFSRLELLDLGGNQFTGSLHVEDVQHLKNLKMLSLNDNQMNGLCNFKDLVELDI 280

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
            KN     LP+CL+N+T L+VL++S N  SG+FPS ISNLTSL YL+ + N  +G+F LS
Sbjct: 281 SKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFSLS 340

Query: 299 SLANHSKLEVLLLSTRNNM-LQVQTEN--FLPTFQLKVLRLPNCSLN-----VIPPFLLH 350
           +LANHS LEVL +S++NN+ + ++TE   + P FQLK L + NC+LN     VIP FL +
Sbjct: 341 TLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTFLSY 400

Query: 351 QFDLKYLDLSHNDLDGAFPT-WALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS 409
           Q++L YL LS N+++G+ P+ W + N                         D + +LDIS
Sbjct: 401 QYNLVYLVLSSNNINGSLPSNWLIHN-------------------------DDMIYLDIS 435

Query: 410 SNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAA 469
           +NN +G LP+D+GI L  + Y++ S N FEGNI SSI +MK+L+ LD S+N+FSGEL   
Sbjct: 436 NNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQ 495

Query: 470 LLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR 529
           L T C +L +L LS+N  +G I P + N   +  L+L NN FSG +E+ L  + +L  L 
Sbjct: 496 LATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLS 554

Query: 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT 589
           +S+N  SG IP  +G  S +  LLMSKN  EG IP+++ +  RLQ+  +S+N L+G +  
Sbjct: 555 ISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPP 614

Query: 590 SFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL 649
              ++ +  LYLQ+N LSG IP  L+    L  LDLR+N FSG IP+ +++ S LR LLL
Sbjct: 615 LSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVLLL 674

Query: 650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR-YRLEHLTFV 708
            GNN EG+IP Q+C+L  + +MDLS N  N SIPSCF N+       +D  + L  + + 
Sbjct: 675 GGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSSILYG 734

Query: 709 ERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL-VEVEFVTKNRYEVYNGSNLDYMVGL 767
           +   +     ++ S L +      E+     D L +EVEF TK+    Y G  L+ M GL
Sbjct: 735 QH--IQDTHYFFDSSLSIDL--PLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMTGL 790

Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
           DLSCNKLTG IPS+IG+LQ+I  LN+SHN LS  IP +FSNL  IESLDLS+N LSG+IP
Sbjct: 791 DLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIP 850

Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPA 887
            +LT+LNFLS FNVSYNNLSG  P  GQFA FDE +YRGN  LCGP +++ C  VE  P+
Sbjct: 851 NELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPPPS 910

Query: 888 TDSNREEGDDSAIDMVSLFWSFCA 911
           + SN  E +++ +DM++ +WSF A
Sbjct: 911 SQSNDNEEEETGVDMITFYWSFTA 934

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 412/938 (43%), Positives = 565/938 (60%), Gaps = 66/938 (7%)

Query: 8   MESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLAT 67
           ME   F   +LI  ++L+V   Q+ GYK C++ ER AL E+K + I        D VL T
Sbjct: 1   MERKVFSGQNLIWVMLLLV---QLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPT 57

Query: 68  WVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHP 127
           W +D    S+CC W+G++CN T+GR+I+L +  T+ F E S              SL HP
Sbjct: 58  WTND--TKSNCCRWEGLKCNQTSGRIIELSIGQTN-FKESSLLNL----------SLLHP 104

Query: 128 FEELQSLDLSN---NSFEGVYEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
           FEEL+SL+LS    N F G++++ + Y++L  L+ L+IL+L  N F++SIF +LNA TSL
Sbjct: 105 FEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSL 164

Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGS---------LESQGI------- 227
           TTL ++ N I G    + L  L  LE LDLS +  NGS         LE  G+       
Sbjct: 165 TTLFIQSNYIGGPLPIKELKNLTKLELLDLSRSGYNGSIPELKVLTNLEVLGLAWNHLDG 224

Query: 228 -------CELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTS 280
                  CE+KNL  L+L  N  E  LP CL N+ +L+VLD+S NQLSG+ P+  ++L S
Sbjct: 225 PIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLES 284

Query: 281 LEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTE-NFLPTFQLKVLRLPNC 339
           LEYL+L DNNFEG F L+ LAN +KL+V  LS+ + MLQV+TE N+LP FQL V  LP C
Sbjct: 285 LEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFC 344

Query: 340 SLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDK 399
           SL  IP FL++Q +L+ +DLS N L G  PTW L+NN +L+VL L NNSFT   Q+P   
Sbjct: 345 SLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIV 403

Query: 400 HDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSK 459
           H  L  LD S+N+ TG LP ++G +L +LL+M+ S+N F+GN+ SS+ EM ++ FLDLS 
Sbjct: 404 HK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSY 462

Query: 460 NNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL 519
           NNFSGEL  +LLT CFSL+ L LS N+F G I P    LT L  L + NN F+G+I  GL
Sbjct: 463 NNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGL 522

Query: 520 LKSKKLVELRMSSNMLSG-HIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV 578
                L     S+N L+G        + S+L +LL+S N  EG +P  LL    L    +
Sbjct: 523 RTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDL 582

Query: 579 SENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQ 637
           S N LSG + +S  N      ++L  NS +GP+P+ L    N   LDLR+N  SG IP  
Sbjct: 583 SGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLE--NAYILDLRNNKLSGSIPQF 640

Query: 638 INECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT--LWSVG 695
           +N    +  LLLRGNNL G IP ++C LT + ++DLS NK NG IP C  +++  L    
Sbjct: 641 VN-TGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGI 699

Query: 696 NLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV 755
            L  +  E ++F + L +     +Y S   + +        +    +VE+EF  K RY+ 
Sbjct: 700 GLSGFSQE-ISFGDSLQME----FYRSTFLVDEFMLYYDSTY---MIVEIEFAAKQRYDS 751

Query: 756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESL 815
           ++G  LDYM GLDLS N+L+G IP+E+G+L ++  LN+S N LS SIP +FS LK IESL
Sbjct: 752 FSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESL 811

Query: 816 DLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTI 875
           DLS+N L G IP +LT L  L+ FNVS+NNLSG+IP  GQF TF+++SY GN  LCG   
Sbjct: 812 DLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPT 871

Query: 876 NKSCNGVEEIP-----ATDSNREEGDDSAIDMVSLFWS 908
           ++SC G +          +   ++ D++AIDMV L+W+
Sbjct: 872 DRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWT 909

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 407/977 (41%), Positives = 568/977 (58%), Gaps = 105/977 (10%)

Query: 23  ILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWK 82
           + +++L Q+ G K C+K E+  L E K+F    ++ ++ D +L +W+D+   +S+CCNW+
Sbjct: 12  VFILLLVQICGCKGCIKEEKMGLLEFKAFLK--LNNEHADFLLPSWIDNN--TSECCNWE 67

Query: 83  GVRCNATTGRVIQLLLNDTSK---FIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNN 139
            V CN TTGRV +L LND ++   F+E    +        LNVSLF PFEEL  L+LS N
Sbjct: 68  RVICNPTTGRVKKLFLNDITRQQNFLEDDWYHYENVKFWLLNVSLFLPFEELHHLNLSAN 127

Query: 140 SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLIL----------- 188
           SF+G  EN+ +  L SLK+L+IL++  N FD S    L  +TSL TL +           
Sbjct: 128 SFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSI 187

Query: 189 RE--------------NNIQGSRTKQGLSKLKNLEALDLS-------------------- 214
           RE              N+++  +  Q  + L NLE LDLS                    
Sbjct: 188 RELASLRNLEVLDLSYNDLESFQLLQDFASLSNLELLDLSYNLFSGSIPSSIRLMSSINN 247

Query: 215 -------------------------------SNFINGSLESQGICELKNLFVLNLEKNNI 243
                                           N +NGSL +QG C+L  L  L+L  N  
Sbjct: 248 LEVLDLSGNSFSGIVPSSIRLLSSLKSLSLAGNHLNGSLANQGFCQLNKLQELDLSYNLF 307

Query: 244 EDHLPNCLNNMTRLKVLDISFNQLSGSFPS-IISNLTSLEYLALFDNNFEGTFPLSSLAN 302
           +  LP CLNN+T L++LD+S N  SG+  S ++ NLTSLEY+ L  N FEG+F  SS AN
Sbjct: 308 QGILPPCLNNLTSLRLLDLSVNLFSGNLSSPLLPNLTSLEYIDLSYNQFEGSFSFSSFAN 367

Query: 303 HSKLEVLLLSTRNNMLQVQTE---NFLPTFQLKVLRLPNCSLNV-IPPFLLHQFDLKYLD 358
           HSKL+++ L   NN  +V+TE    ++P FQLK L L +C L   +P FL +QF L  +D
Sbjct: 368 HSKLQMVKLGMNNNKFEVETEYPIGWVPLFQLKALSLDSCKLTGDLPSFLQYQFRLVGVD 427

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP 418
           LSHN+L G+FP W L+NNT+L+ L+L NNS  G L LP +++  +H LDIS N   G+L 
Sbjct: 428 LSHNNLTGSFPNWLLENNTRLKSLVLRNNSLMGQL-LPLERNTRIHSLDISHNQLDGQLQ 486

Query: 419 QDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLL 478
           +++  ++  + Y+++S+N FEG + SSI E++ L +LDLS NNFSGE+   LL +   L 
Sbjct: 487 ENVAHMIPNMKYLNLSDNGFEGILPSSIVELRALWYLDLSTNNFSGEVPKQLLAAK-DLG 545

Query: 479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGH 538
            L LS+N F+G IF    NL +L+ LYL NN+ +G +   + KS  L  L +S+N +SG 
Sbjct: 546 VLKLSNNKFHGEIFSRDFNLIRLEVLYLGNNQLTGTLSNVISKSSWLGVLDVSNNYMSGE 605

Query: 539 IPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEH 598
           IP  +GN++YL  L++  N F+G +P ++     L+   VS+N LSG +     + S++H
Sbjct: 606 IPSQIGNMTYLTTLVLGNNSFKGKLPPEISQLWGLEFLDVSQNALSGSLPCLKTMESLKH 665

Query: 599 LYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINEC-SNLRFLLLRGNNLEGQ 657
           L+LQ N  +G IP     SS+LLTLD+RDN   G IP+ I+     LR  LL GN L G 
Sbjct: 666 LHLQGNMFTGLIPRDFLNSSHLLTLDMRDNRLFGSIPNSISALLKQLRIFLLGGNLLSGF 725

Query: 658 IPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVE-RLDVNSI 716
           IPN +C LT + +MDLS+N F+G IP CF +I     G + +       F+E R  ++S 
Sbjct: 726 IPNHLCHLTEISLMDLSNNSFSGPIPKCFGHIRF---GEMKKEDNVFGQFIEIRYGMDSH 782

Query: 717 GIYYSSMLDMGQ-LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT 775
            +Y   ++   + LSS  +G        EVEFVTKNR + Y G  L++M GLDLSCN LT
Sbjct: 783 LVYAGYLVKYWEDLSSVYKGK------DEVEFVTKNRRDFYRGGILEFMSGLDLSCNNLT 836

Query: 776 GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNF 835
           GEIP E+G L  I  LN+SHN L+ SIP+SFS+L  IESLDLS+N+L G+IP +L ELNF
Sbjct: 837 GEIPHELGMLSWIRALNLSHNQLNGSIPKSFSDLSQIESLDLSYNKLGGEIPLELVELNF 896

Query: 836 LSNFNVSYNNLSGLIPD-KGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREE 894
           L+ F+V+YNN+SG +P+ K QFATFDESSY GN  LCG  + + CN   E P   S   E
Sbjct: 897 LAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFLCGELLKRKCNTSIESPCAPSQSFE 956

Query: 895 GDDSAIDM--VSLFWSF 909
            +    D+  V  F SF
Sbjct: 957 SETKWYDINHVVFFASF 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183409|ref|NP_176115.2| receptor like protein 9 [Arabidopsis thaliana] gi|332195389|gb|AEE33510.1| receptor like protein 9 [Arabidopsis thaliana]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 390/924 (42%), Positives = 547/924 (59%), Gaps = 73/924 (7%)

Query: 21  SVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCN 80
           +  +MVV  QM GY +C++ ER  L E+K++    ++ +Y       W +D    SDCC 
Sbjct: 12  AAWVMVVSLQMQGYISCIEKERKGLLELKAY----VNKEYS----YDWSND--TKSDCCR 61

Query: 81  WKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNS 140
           W+ V C+ T+GRVI L LN T           + D +L +N+SLFHPFEEL++L+L +  
Sbjct: 62  WERVECDRTSGRVIGLFLNQT-----------FSDPIL-INLSLFHPFEELRTLNLYDFG 109

Query: 141 FEGVYEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTK 199
             G +++   Y +LG LK+L+IL++G N  ++S+  +LNA +SL TLIL  NN++G+   
Sbjct: 110 CTGWFDDIHGYKSLGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEGTFPM 169

Query: 200 QGLSKLKNLEALDLSSNFING-----------------------SLESQGICELKNLFVL 236
           + L  L NLE LDLS N +NG                       SL  +G+C+LKNL  L
Sbjct: 170 KELKDLSNLELLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQEL 229

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           +L +N      P C +++T+L+VLD+S NQ +G+ PS+ISNL SLEYL+L DN FEG F 
Sbjct: 230 DLSQNEFTGPFPQCFSSLTQLQVLDMSSNQFNGTLPSVISNLDSLEYLSLSDNKFEGFFS 289

Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLP-TFQLKVLRLPNCSLNVIPPFLLHQFDLK 355
              +AN SKL+V  LS+++++L +++E  L   F+L V+ L  C+L  +P FL  Q DL+
Sbjct: 290 FDLIANLSKLKVFKLSSKSSLLHIESEISLQLKFRLSVIDLKYCNLEAVPSFLQQQKDLR 349

Query: 356 YLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTG 415
            ++LS+N L G  P+W L+N  KL VLLL NNSFT    LP      LH LD+S N F  
Sbjct: 350 LINLSNNKLTGISPSWFLENYPKLRVLLLWNNSFTI-FHLPRLLVHSLHVLDLSVNKFDE 408

Query: 416 KLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF 475
            LP ++G +L  + ++++SNN F+GN+ SS +EMK++ FLDLS NN SG L       C 
Sbjct: 409 WLPNNIGHVLPNISHLNLSNNGFQGNLPSSFSEMKKIFFLDLSHNNLSGSLPKKFCIGCS 468

Query: 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML 535
           SL  L LS N F G+IFP  M L  L+ L  +NN+F+ +I + L+ SK LV L +S+N L
Sbjct: 469 SLSILKLSYNRFSGKIFPQPMKLESLRVLIADNNQFT-EITDVLIHSKGLVFLELSNNSL 527

Query: 536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISS 595
            G IP W G   +L  L +S N   G IP  L N    QL  +S N  SG + + F+   
Sbjct: 528 QGVIPSWFGGFYFL-YLSVSDNLLNGTIPSTLFN-VSFQLLDLSRNKFSGNLPSHFSFRH 585

Query: 596 VEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLE 655
           +  LYL  N  SGP+P  L    N++ LDLR+N  SG IP  ++    L +LLLRGN L 
Sbjct: 586 MGLLYLHDNEFSGPVPSTLLE--NVMLLDLRNNKLSGTIPRFVSNRYFL-YLLLRGNALT 642

Query: 656 GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLE----HLTFVERL 711
           G IP  +C+L  + ++DL++N+ NGSIP C  N+   S G    Y ++        + R 
Sbjct: 643 GHIPTSLCELKSIRVLDLANNRLNGSIPPCLNNV---SFGRSLDYEIDPDFGSSYGMVRA 699

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
           D      Y  S++   +   +  G   F     VEF +K RY+ Y G +  +M GLD S 
Sbjct: 700 DQELEESYSRSLVLPLEFELDYSGYLDF----TVEFASKRRYDSYMGESFKFMFGLDFSS 755

Query: 772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831
           N+L GEIP E+G+ Q I  LN+SHN LS  +PESFSNL  IES+DLS N L G IP  LT
Sbjct: 756 NELIGEIPRELGDFQRIRALNLSHNSLSGLVPESFSNLTDIESIDLSFNVLHGPIPHDLT 815

Query: 832 ELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCN----GVEEIPA 887
           +L+++  FNVSYNNLSGLIP +G+F + D ++Y GN  LCG TINKSC+    G +EI +
Sbjct: 816 KLDYIVVFNVSYNNLSGLIPSQGKFLSLDVTNYIGNPFLCGTTINKSCDDNTSGFKEIDS 875

Query: 888 TDSNREEGDDSAIDMVSLFWSFCA 911
              +    D++AIDM + +WS  A
Sbjct: 876 HSGD----DETAIDMETFYWSLFA 895

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 411/975 (42%), Positives = 563/975 (57%), Gaps = 115/975 (11%)

Query: 8   MESTSFIKLSLISSVILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLAT 67
           ME   F   +LI  ++L+V   Q+ GYK C++ ER AL E+K + I        D VL T
Sbjct: 1   MERKVFSGQNLIWVMLLLV---QLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPT 57

Query: 68  WVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHP 127
           W +D    S+CC W+G++CN T+GR+I+L +  T+ F E S              SL HP
Sbjct: 58  WTND--TKSNCCRWEGLKCNQTSGRIIELSIGQTN-FKESSLLNL----------SLLHP 104

Query: 128 FEELQSLDLSN---NSFEGVYEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
           FEEL+SL+LS    N F G++++ + Y++L  L+ L+IL+L  N F++SIF +LNA TSL
Sbjct: 105 FEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSL 164

Query: 184 TTLILRENNIQG------------------SRTK-------------------------- 199
           TTL ++ N I G                  SR+                           
Sbjct: 165 TTLFIQSNYIGGPLPIKELKNLTKLELLDLSRSGYNGSIPEFTHLEKLKALDLSANDFSS 224

Query: 200 ----QGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT 255
               Q L  L NLE L L+ N ++G +  +  CE+KNL  L+L  N  E  LP CL N+ 
Sbjct: 225 LVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLN 284

Query: 256 RLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN 315
           +L+VLD+S NQLSG+ P+  ++L SLEYL+L DNNFEG F L+ LAN +KL+V  LS+ +
Sbjct: 285 KLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTS 344

Query: 316 NMLQVQTE-NFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQ 374
            MLQV+TE N+LP FQL V  LP CSL  IP FL++Q +L+ +DLS N L G  PTW L+
Sbjct: 345 EMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLE 404

Query: 375 NNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMS 434
           NN +L+VL L NNSFT   Q+P   H  L  LD S+N+ TG LP ++G +L +LL+M+ S
Sbjct: 405 NNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGS 462

Query: 435 NNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG 494
           +N F+GN+ SS+ EM ++ FLDLS NNFSGEL  +LLT CFSL+ L LS N+F G I P 
Sbjct: 463 HNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPI 522

Query: 495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG-HIPHWMGNLSYLEVLL 553
              LT L  L + NN F+G+I  GL     L     S+N L+G        + S+L +LL
Sbjct: 523 QTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLL 582

Query: 554 MSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI 612
           +S N  EG +P  LL    L    +S N LSG + +S  N      ++L  NS +GP+P+
Sbjct: 583 LSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPV 642

Query: 613 ALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672
            L    N   LDLR+N  SG IP  +N    +  LLLRGNNL G IP ++C LT + ++D
Sbjct: 643 TLLE--NAYILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTGSIPRKLCDLTSIRLLD 699

Query: 673 LSHNKFNGSIPSCFTNITL--------------WSVGNLDRYRLEHLTFVERLDVNSIGI 718
           LS NK NG IP C  +++                S G+  +      TF+    V+   +
Sbjct: 700 LSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFL----VDEFML 755

Query: 719 YYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEI 778
           YY S                   +VE+EF  K RY+ ++G  LDYM GLDLS N+L+G I
Sbjct: 756 YYDSTY----------------MIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVI 799

Query: 779 PSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN 838
           P+E+G+L ++  LN+S N LS SIP +FS LK IESLDLS+N L G IP +LT L  L+ 
Sbjct: 800 PAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAV 859

Query: 839 FNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIP-----ATDSNRE 893
           FNVS+NNLSG+IP  GQF TF+++SY GN  LCG   ++SC G +          +   +
Sbjct: 860 FNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEED 919

Query: 894 EGDDSAIDMVSLFWS 908
           + D++AIDMV L+W+
Sbjct: 920 DDDEAAIDMVVLYWT 934

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 400/912 (43%), Positives = 533/912 (58%), Gaps = 85/912 (9%)

Query: 35  KACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVI 94
           + CL+ E+  L ++K+F I    ++Y +  L +W D   +  DCC+W+ V+CN TTG V+
Sbjct: 28  EGCLEKEKLGLLDLKTFLISNSTSKYNN--LTSW-DKSDV--DCCSWERVKCNHTTGHVM 82

Query: 95  QLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLG 154
            LLL      +    N TY   +   N S F PF  L  LDLS N F+G  E +     G
Sbjct: 83  DLLLGG----VTIPTNTTY---LWIFNFSYFLPFNHLVHLDLSANYFDGWVEIE-----G 130

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS 214
           +     IL+  +NY +             + L+ R+     S T          + L+++
Sbjct: 131 NF----ILDFFFNYHE-------------SNLVFRDGFTTLSHTTH--------QPLNVN 165

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
                  +   G+C +KNL  L+L +N +  + P CL N+T L+VLD+S N   G+ PS 
Sbjct: 166 RRLTENKIILTGLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSF 225

Query: 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTE---NFLPTFQL 331
           I +L SLEYL+LFD NF+G F  SSL NHSKLEV LLS + N L V+TE   ++ PTFQL
Sbjct: 226 IISLKSLEYLSLFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQL 285

Query: 332 KVLRLPNCSLN-----VIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTN 386
           KVL+L NC LN       P FLL+Q +L+ LDLSHN L G FP+W L+NNTKLE L L N
Sbjct: 286 KVLQLRNCFLNSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMN 345

Query: 387 NSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI 446
           NSFTG L+LP  KH  L  L IS+N   G+L +D+G I   L Y+++S N FEG + SSI
Sbjct: 346 NSFTGTLELPTFKHGLL-DLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSI 404

Query: 447 AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL 506
            EM+ +R LDLS NNFSGELS+ L+++  SL  L LS N+F+G + P   NLT+L +LYL
Sbjct: 405 GEMQTIRTLDLSNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYL 463

Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
            NN FSG IE+G+  +  L  L +S+NMLSG IP W+G  + L VL +SKN  +G IP +
Sbjct: 464 NNNSFSGVIEDGVSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNE 523

Query: 567 LLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
           L N   L    +SEN LS F+   F N   ++ LYLQKN+L G IP A  + + L +LDL
Sbjct: 524 LCNLISLSYLDLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDL 583

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
           RDN F G IP  IN  S LR LLL GN L G IP  +C+L  + +MDLSHN  N +IP C
Sbjct: 584 RDNNFFGNIPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPC 643

Query: 686 FTNITL-------WSVG------------NLDRYRLEHLTFVERLD------VNSIGIYY 720
             NI+         +VG             +  Y     +++  +D       N+  I+Y
Sbjct: 644 IKNISFKMVEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFY 703

Query: 721 SSMLDMGQLSSEERGPFTFDY-LVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779
           +S L +    ++E   +   Y +VE+EF TK+ Y  Y G+NL+ M GLDLS N L+G IP
Sbjct: 704 NSSLSLNHPIADE---YMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIP 760

Query: 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNF 839
            EIGEL++I  LN+SHN  S SIP +F NL  IESLDLS+N LSG +P  LT L  L+ F
Sbjct: 761 PEIGELRDIKALNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIF 820

Query: 840 NVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGDDSA 899
           NVSYN  SG +P   QFA FDE++YRGN  LCG  IN +CN     P   + + +   +A
Sbjct: 821 NVSYNKFSGRVPTTMQFANFDENNYRGNSDLCGSVINITCNHTSIFPPASTTQHQ---TA 877

Query: 900 IDMVSLFWSFCA 911
           IDM S +WS  A
Sbjct: 878 IDMESFYWSCVA 889

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	911
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.841	0.794	0.431	2.4e-154
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.837	0.763	0.438	1.4e-151
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.897	0.918	0.413	2e-150
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.845	0.788	0.435	5.4e-150
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.850	0.715	0.430	8.8e-150
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.948	0.924	0.393	8e-140
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.852	0.855	0.387	1.1e-124
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.920	0.671	0.291	2.7e-77
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.884	0.643	0.304	8.7e-75
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.888	0.845	0.296	1.8e-71

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
 Identities = 349/809 (43%), Positives = 484/809 (59%)

Query:   130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSI-FLYLNALTSLTTLIL 188
             +L+ LDL++N F     N  +  L +   L  L L  N  D S     L  LT+L  L L
Sbjct:   133 KLEILDLASNKFN----NSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDL 188

Query:   189 RENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG-------------ICELKNLFV 235
               N   GS   Q LS L+ L+ALDLS N  +GS+E QG             ICEL N+  
Sbjct:   189 SRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQE 248

Query:   236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
             L+L +N +  HLP+CL ++T L+VLD+S N+L+G+ PS + +L SLEYL+LFDN+FEG+F
Sbjct:   249 LDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSF 308

Query:   296 PLSSLANHSKLEVLLLSTRNNMLQVQTEN-FLPTFQLKVLRLPNCSLNVIPPFLLHQFDL 354
                SLAN S L VL L ++++ LQV +E+ + P FQL V+ L +C++  +P FLLHQ DL
Sbjct:   309 SFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDL 368

Query:   355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
             +++DLS N++ G  P+W L NNTKL+VLLL NN FT + Q+P   H+ L  LD+S+N+F 
Sbjct:   369 RHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLLF-LDVSANDFN 426

Query:   415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474
                P+++G I   L Y++ S N+F+ N+ SS+  M  ++++DLS+N+F G L  + +  C
Sbjct:   427 HLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGC 486

Query:   475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNM 534
             +S+  L LS N   G IFP   N T +  L+++NN F+GKI +GL     L  L MS+N 
Sbjct:   487 YSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNN 546

Query:   535 LSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNIS 594
             L+G IP W+G L  L  LL+S NF +G+IP+ L N   LQL  +S N LSG +    +  
Sbjct:   547 LTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSR 606

Query:   595 SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXX 654
             +   L LQ N LSG IP  L   +N+  LDLR+N FSG IP  IN               
Sbjct:   607 NGVVLLLQDNKLSGTIPDTLL--ANVEILDLRNNRFSGKIPEFIN-IQNISILLLRGNNF 663

Query:   655 EGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEH-LTFVERL-- 711
              GQIP+Q+C L+ + ++DLS+N+ NG+IPSC +N +         Y  +  ++F   +  
Sbjct:   664 TGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFN 723

Query:   712 ------DVNSI---GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762
                   D +S    GIY+ S+L +  LS + +         ++EF TK+RY+ Y G NL 
Sbjct:   724 GFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ----TKIEFATKHRYDAYMGGNLK 779

Query:   763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
              + G+DLS N+L+GEIP E G L E+  LN+SHN LS  IP+S S+++ +ES DLS NRL
Sbjct:   780 LLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRL 839

Query:   823 SGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGV 882
              G+IP +LTEL  LS F VS+NNLSG+IP   QF TFD  SY GN  LCG   N+SCN  
Sbjct:   840 QGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNN- 898

Query:   883 EEIPATDSNREEGDDSAIDMVSLFWSFCA 911
                   D N  E D+S IDMVS + SF A
Sbjct:   899 NSYEEAD-NGVEADESIIDMVSFYLSFAA 926

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
 Identities = 351/800 (43%), Positives = 472/800 (59%)

Query:   128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNL-GYNYFDDSIFLYLNALTSLTTL 186
             F +L+ LDLS+N F     ++ +  L S   LK L+L G N         L  LT++  L
Sbjct:   148 FRKLEILDLSDNLFN----SRIFPFLNSATSLKSLSLWGNNMGGPFPAKELRDLTNVELL 203

Query:   187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG----------ICELKNLFVL 236
              L  N   GS   + L  L+ L+ALDLS N  + S+E QG           C  KN+  L
Sbjct:   204 DLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEEL 263

Query:   237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
              L  N +    P CL ++T L+VLD+S NQL+G+ PS ++NL SLEYL+LF NNFEG F 
Sbjct:   264 KLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFS 323

Query:   297 LSSLANHSKLEVLLLSTRNNMLQVQTE-NFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK 355
             L  LAN SKL+VL L +++N L+V+ E ++ P FQL V+ L +C+L  +P FLLHQ DL 
Sbjct:   324 LGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLH 383

Query:   356 YLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTG 415
             ++DLS N + G FP+W L+NNTKLEVLLL NNSFT + QLP   H+ L  L++S N F  
Sbjct:   384 HVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLLF-LNVSVNKFNH 441

Query:   416 KLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF 475
                Q+ G IL  L+ ++++ N F+GN+ SS+  MK + FLDLS N F G+L    L  C+
Sbjct:   442 LFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCY 501

Query:   476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML 535
             +L  L LS N   G +FP   N T+L  + ++NN F+G I +G      L  L +S+N L
Sbjct:   502 NLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKL 561

Query:   536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISS 595
             +G IP W+G    L  L +S N  EG IP  L N   LQL  +S N LSG +    ++SS
Sbjct:   562 TGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSS 619

Query:   596 VEH---LYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXX 652
             + H   L LQ N+LSG IP  L    N++ LDLR+N  SG +P  IN  +          
Sbjct:   620 IYHGAVLLLQNNNLSGVIPDTLLL--NVIVLDLRNNRLSGNLPEFINTQNISILLLRGNN 677

Query:   653 XXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLD 712
                GQIP+Q C L+ + ++DLS+NKFNGSIPSC +N +       D YR +      R  
Sbjct:   678 FT-GQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYD---VPSRFG 733

Query:   713 VNSIGIYYSSMLDMGQLSS-EERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
                  +Y+ S+L + + +   E    T     ++EF TK+RY+ Y G NL  + G+DLS 
Sbjct:   734 TAKDPVYFESLLMIDEFNMVNETNSQT-----KIEFATKHRYDAYMGGNLKLLFGMDLSE 788

Query:   772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831
             N+L+GEIP E+G L E+  LN+SHN LS  I ESFS LK +ESLDLS NRL G IP +LT
Sbjct:   789 NELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLT 848

Query:   832 ELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSN 891
             ++  L+ FNVSYNNLSG++P   QF TF+  SY GN  LCG +I+ SC      P TD N
Sbjct:   849 DMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNNFHP-TD-N 906

Query:   892 REEGDDSAIDMVSLFWSFCA 911
               E D+S +DM S +WSF A
Sbjct:   907 GVEADESTVDMESFYWSFVA 926

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
 Identities = 357/864 (41%), Positives = 495/864 (57%)

Query:    74 MSSD--CCNWKGVRCNATTGRVIQLLLNDTS-----KFIEYSKNYTYG-DMVLSLNVS-- 123
             MSSD  CC+W+ ++C+ T+ RVI + L+  S        + +  + Y  + + SLN+S  
Sbjct:     1 MSSDRSCCHWRRIKCDITSKRVIGISLSLESIRPPDPLPQLNLTFFYPFEELQSLNLSSG 60

Query:   124 LFHP-FEE------------LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
              F   F+E            L++LDL  N     Y+      L     LK L L  N F 
Sbjct:    61 YFKGWFDERKGGKGLGSLRNLETLDLGVN----FYDTSVLPYLNEAVSLKTLILHDNLFK 116

Query:   171 DSIFLY-LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICE 229
                 +  L  LTSL  L L+ N   G    Q L+ L+NL ALDLS+N  +GSL+ QGIC 
Sbjct:   117 GGFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICR 176

Query:   230 LKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
             L+ L  L L +N  E  +P C +  ++L+VLD+S N LSG  P  IS+  S+EYL+L DN
Sbjct:   177 LEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDN 236

Query:   290 NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQ--LKVLRLPNCSLNVIPPF 347
             +FEG F L  +   ++L+V  LS+R+ MLQ+   N     Q  L  + L +C+L  IP F
Sbjct:   237 DFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNLGKIPGF 296

Query:   348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD 407
             L +Q +L+ +DLS+N L G FPTW L+NNT+L+ LLL NNSF   L LP      L  LD
Sbjct:   297 LWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRR-LQILD 354

Query:   408 ISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467
             +S NNF  +LP+D+G+IL  L ++++SNN F GN+ SS+A M+ + F+DLS NNFSG+L 
Sbjct:   355 LSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLP 414

Query:   468 AALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVE 527
               L T C+SL WL LS N F G I     + T L  L ++NN F+GKI   LL  + L  
Sbjct:   415 RNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSV 474

Query:   528 LRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFM 587
             + +S+N+L+G IP W+GN  +LEVL +S N  +G IP  L N   L L  +S N+LSG +
Sbjct:   475 IDLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSL 533

Query:   588 TTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXX 647
                 +      L L  N+L+G IP  L+    LL  DLR+N  SG IP            
Sbjct:   534 PLRSSSDYGYILDLHNNNLTGSIPDTLWYGLRLL--DLRNNKLSGNIP-LFRSTPSISVV 590

Query:   648 XXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVG--NLDRYRLEHL 705
                     G+IP ++C L+ + M+D +HN+ N SIPSC TN++  S G  N D       
Sbjct:   591 LLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPAS 650

Query:   706 TFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV 765
                  +++ +  +YY S++   + S +    ++ D+ V+VEF  K RY++Y    L+ M 
Sbjct:   651 LLSNFMEIYT-EVYYESLIVSDRFSLD----YSVDFNVQVEFAVKQRYDLYMRGTLNQMF 705

Query:   766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
             GLDLS N+L+G IP E+G+L+ +  LN+S N LS SIP SFSNL+ IESLDLS N+L G 
Sbjct:   706 GLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGT 765

Query:   826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEI 885
             IP +LT L  L  FNVSYNNLSG+IP   QF TF E SY GN  LCG    +SC G    
Sbjct:   766 IPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTTI- 824

Query:   886 PATDSNREEGDDSAI-DMVSLFWS 908
              ++    E+ D+S + D+V L+WS
Sbjct:   825 -SSGKEYEDDDESGLLDIVVLWWS 847

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
 Identities = 351/806 (43%), Positives = 485/806 (60%)

Query:   119 SLNVSLFHPF----EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIF 174
             S N S+F PF      L +L + +N   G    +    L +L +L++L+L  + ++ SI 
Sbjct:   149 SFNNSIF-PFLNAATSLTTLFIQSNYIGGPLPIKE---LKNLTKLELLDLSRSGYNGSIP 204

Query:   175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF 234
              + + L  L  L L  N+       Q L  L NLE L L+ N ++G +  +  CE+KNL 
Sbjct:   205 EFTH-LEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLR 263

Query:   235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
              L+L  N  E  LP CL N+ +L+VLD+S NQLSG+ P+  ++L SLEYL+L DNNFEG 
Sbjct:   264 QLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGF 323

Query:   295 FPLSSLANHSKLEVLLLSTRNNMLQVQTE-NFLPTFQLKVLRLPNCSLNVIPPFLLHQFD 353
             F L+ LAN +KL+V  LS+ + MLQV+TE N+LP FQL V  LP CSL  IP FL++Q +
Sbjct:   324 FSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTN 383

Query:   354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
             L+ +DLS N L G  PTW L+NN +L+VL L NNSFT   Q+P   H  L  LD S+N+ 
Sbjct:   384 LRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDI 441

Query:   414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
             TG LP ++G +L +LL+M+ S+N F+GN+ SS+ EM ++ FLDLS NNFSGEL  +LLT 
Sbjct:   442 TGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTG 501

Query:   474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533
             CFSL+ L LS N+F G I P    LT L  L + NN F+G+I  GL     L     S+N
Sbjct:   502 CFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNN 561

Query:   534 MLSGHIPHWMG-NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFN 592
              L+G I   +  + S+L +LL+S N  EG +P  LL    L    +S N LSG + +S  
Sbjct:   562 RLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSV- 620

Query:   593 ISSVE--HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXX 650
             ++S+    ++L  NS +GP+P+ L    N   LDLR+N  SG IP  +N           
Sbjct:   621 VNSMYGIKIFLHNNSFTGPLPVTLLE--NAYILDLRNNKLSGSIPQFVNT-GKMITLLLR 677

Query:   651 XXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI-TLWSVG-NLDRYRLEHLTFV 708
                  G IP ++C LT + ++DLS NK NG IP C  ++ T    G  L  +  E ++F 
Sbjct:   678 GNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQE-ISFG 736

Query:   709 ERLDVNSIGIYYSSML-DMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL 767
             + L +     Y S+ L D   L  +     T+  +VE+EF  K RY+ ++G  LDYM GL
Sbjct:   737 DSLQME---FYRSTFLVDEFMLYYDS----TY-MIVEIEFAAKQRYDSFSGGTLDYMYGL 788

Query:   768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
             DLS N+L+G IP+E+G+L ++  LN+S N LS SIP +FS LK IESLDLS+N L G IP
Sbjct:   789 DLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIP 848

Query:   828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPA 887
              +LT L  L+ FNVS+NNLSG+IP  GQF TF+++SY GN  LCG   ++SC G +    
Sbjct:   849 HQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKE 908

Query:   888 TDSNREE-----GDDSAIDMVSLFWS 908
              D+  EE      D++AIDMV L+W+
Sbjct:   909 ADNGGEEEEEDDDDEAAIDMVVLYWT 934

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1462 (519.7 bits), Expect = 8.8e-150, P = 8.8e-150
 Identities = 348/809 (43%), Positives = 478/809 (59%)

Query:   119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
             +L+  +    + LQ LDLS+N F  +   +  D   S KR     +        I L L+
Sbjct:   248 TLSTHVLKDLKMLQELDLSDNGFTNLDHGRDVDESRSEKRFDFREVVQKVETLWIGLRLS 307

Query:   179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQ-GICELKNLFVLN 237
                S+T     ++   G     GL    +L+ LD   N ++ + E   GIC L  L  L+
Sbjct:   308 FQMSITH---HKSVTVGGNGFLGLEIPTSLQVLDFKRNQLSLTHEGYLGICRLMKLRELD 364

Query:   238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTS-LEYLALFDNNFEGTFP 296
             L  N +   LP CL N+T L+ LD+S NQL+G+  S +S L S LEYL+L DNNF+G+F 
Sbjct:   365 LSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFL 423

Query:   297 LSSLANHSKLEVLLLSTRNNMLQVQTEN-FLPTFQLKVLRLPNCSL-NVIPPFLLHQFDL 354
              +SL N ++L V  LS++  ++QVQTE+ + P FQLK+L L NCSL + +  FL+HQ DL
Sbjct:   424 FNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDL 483

Query:   355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
              ++DLSHN L G FPTW ++NNT+L+ +LL+ NS T  LQLP   H  L  LDISSN   
Sbjct:   484 CFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIY 541

Query:   415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474
               + +D+G++   L +M+ S+NHF+G I SSI EMK L+ LD+S N   G+L    L+ C
Sbjct:   542 DSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGC 601

Query:   475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNM 534
             +SL  L LS+N   G+IF  + NLT L  L+L+ N F+G +EEGLLKSK L  L +S N 
Sbjct:   602 YSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNR 661

Query:   535 LSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNIS 594
              SG +P W+G +S L  L MS N  +G  P  L     +++  +S N  SG +  + N  
Sbjct:   662 FSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFP 720

Query:   595 SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXX 654
             S+  L LQ N  +G +P  LF+++ L  LDLR+N FSG I + I++ S            
Sbjct:   721 SLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSF 780

Query:   655 EGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVN 714
             +  IP +ICQL+ +G++DLSHN+F G IPSCF+ ++  +  N DR     ++ V   D +
Sbjct:   781 QTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQN-DRT----MSLVADFDFS 835

Query:   715 SIGI-----YYSSM-LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLD 768
              I       Y S + LD G  +  +  P T      V+F+TK+RYE Y G  L YM GLD
Sbjct:   836 YITFLPHCQYGSHLNLDDGVRNGYQPKPATV-----VDFLTKSRYEAYQGDILRYMHGLD 890

Query:   769 LSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP 828
             LS N+L+GEIP EIG+LQ I  LN+S N L+ SIP+S S LK +ESLDLS+N+L G IPP
Sbjct:   891 LSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPP 950

Query:   829 KLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC--NGVEEIP 886
              L +LN L   N+SYNNLSG IP KG   TFDE SY GN HLCG   NK+C    V E P
Sbjct:   951 ALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPP 1010

Query:   887 A--TDSNREEGDD--SAIDMVSLFWSFCA 911
             +  T +  EE ++  + IDMV  +W+ CA
Sbjct:  1011 SVSTHAKEEENEEEGNVIDMVWFYWT-CA 1038

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
 Identities = 359/913 (39%), Positives = 489/913 (53%)

Query:    25 MVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGV 84
             M++L Q+HG  +C++ ER AL E+K + +        D VL TW +D    SDCC W G+
Sbjct:     1 MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCCQWDGI 58

Query:    85 RCNATTGRVIQLLLNDT----SKFIEYSKNYTYGDMVLSLNVSL-----FHPF----EEL 131
             +CN T+GRVI+L + D     S  +  S  + + + V SLN+S      F+ F    E  
Sbjct:    59 KCNRTSGRVIELSVGDMYFKESSPLNLSLLHPFEE-VRSLNLSTEGYNEFNGFFDDVEGY 117

Query:   132 QSLD-LSNNSFEGVYENQA-YDT---LGSLKRLKILNLGYNYFDDSIFLY-LNALTSLTT 185
             +SL  L N     +  N   Y T   L +   L  L L YN  D    +  L  LT+L  
Sbjct:   118 RSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLEL 177

Query:   186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
             L LR N + GS   Q L  LK L+ALDLSSN  + S+E Q +  L NL VL L +N+++ 
Sbjct:   178 LDLRANKLNGSM--QELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDG 235

Query:   246 HLP-NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
              +P      +  L+ LD+  N   G  P  + +L  L  L L  N   G  P SS ++  
Sbjct:   236 PIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLP-SSFSSLE 294

Query:   305 KLEVLLLSTRNNMLQVQTENFLPTFQLK-VLRLPNCSLNVIPPFLLHQFDLKYLDLSHND 363
              LE L LS  N               LK V+ L  CSL  IP FLL+Q  L+ +DLS N+
Sbjct:   295 SLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNN 354

Query:   364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI 423
             L G  PTW L NN +LEVL L NNSFT    +P   H+ L   D S+NN  GK P  M  
Sbjct:   355 LSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMDH 411

Query:   424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483
              L  L+ ++ SNN F+G   +SI EMK + FLDLS NNFSG+L  + +T C S+++L LS
Sbjct:   412 ALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLS 471

Query:   484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWM 543
              N F GR  P   N   L  L ++NN F+G I  GL  S  L  L MS+N LSG IP W+
Sbjct:   472 HNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWL 531

Query:   544 GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK 603
                 YL+ +L+S NF EG IP  LL    L    +S N  SG + +  +     +++L  
Sbjct:   532 FEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHN 591

Query:   604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQIC 663
             N+ +GPIP  L +S  +L  DLR+N  SG IP Q ++               G IP ++C
Sbjct:   592 NNFTGPIPDTLLKSVQIL--DLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELC 648

Query:   664 QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVN-SIGIYYSS 722
              L+ + ++DLS NK NG IPSC +N+   S G L    +        L  +  + +Y S+
Sbjct:   649 DLSNVRLLDLSDNKLNGVIPSCLSNL---SFGRLQEDAMALNIPPSFLQTSLEMELYKST 705

Query:   723 MLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSN------LDYMVGLDLSCNKLTG 776
              L    +   E    T+    E++F  K RY+ Y+G +      L  M G+DLS N+L+G
Sbjct:   706 FL----VDKIEVDRSTYQE-TEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSG 760

Query:   777 EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFL 836
              IP+E+G+L ++  LN+SHN L  SIP SFS L  +ESLDLSHN L G IP  L+ L  L
Sbjct:   761 VIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSL 820

Query:   837 SNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEGD 896
             + F+VS NNLSG+IP   QF TF+E SY GN  LCGP  ++SC   +     D+ +EE D
Sbjct:   821 AVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEED 880

Query:   897 D-SAIDMVSLFWS 908
             D +AIDM+  ++S
Sbjct:   881 DKAAIDMMVFYFS 893

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 323/834 (38%), Positives = 454/834 (54%)

Query:    25 MVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGV 84
             M++L  +HG+ +C++ ER AL E+K F +   +    D VL TW +D    SDCC W+ +
Sbjct:     1 MLLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND--TKSDCCQWENI 58

Query:    85 RCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGV 144
             +CN T+ R+  L L  TS ++E S           LN+SL HPFEE++SLDLSN+   G+
Sbjct:    59 KCNRTSRRLTGLSLY-TSYYLEISL----------LNLSLLHPFEEVRSLDLSNSRLNGL 107

Query:   145 YEN-QAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLS 203
              ++ + Y +L  L+ L+ILN   N F++SIF +LNA TSLTTL LR NN+ G    + L 
Sbjct:   108 VDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELK 167

Query:   204 KLKNLEALDLSSNFINGS----------------LESQGI---------CELKNLFVLNL 238
              L NLE LDLS N I+GS                L S GI         CE+KNL  L+L
Sbjct:   168 NLTNLELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDL 227

Query:   239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
                N    LP C  N+ +L+ LD+S NQL+G+ P   S+L SLEYL+L DN+FEG F L+
Sbjct:   228 RGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLN 287

Query:   299 SLANHSKLEVLLLSTRNNMLQVQTEN-FLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357
              L N +KL+V + S++++M+QV+ E+ + P FQL VL L  CSL  IP FL++Q +L  +
Sbjct:   288 PLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVV 347

Query:   358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
             DLS N + G  PTW L+NN +LEVL L NNSFT   Q+P   H+ L  LD S NN  G  
Sbjct:   348 DLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSENNIGGLF 405

Query:   418 PQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL 477
             P + G +L  L++M+ SNN F+GN  SS+ EM  + FLDLS NN SGEL  + ++SCFSL
Sbjct:   406 PDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSL 465

Query:   478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG 537
               L LS N F G   P   N T L  L + NN F+GKI  GLL    L  L MS+N L G
Sbjct:   466 SILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEG 525

Query:   538 HIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ--LFSVSENYLSGFMTTSFNISS 595
              +P  +    YL  L +S N   G +P    +H  L   LF  + N+ +G +  +F + S
Sbjct:   526 ELPPLLLVFEYLNFLDLSGNLLSGALP----SHVSLDNVLFLHNNNF-TGPIPDTF-LGS 579

Query:   596 VEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXXE 655
             ++ L L+ N LSG IP     + ++  L LR N  +G IP  + E S             
Sbjct:   580 IQILDLRNNKLSGNIP-QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLN 638

Query:   656 GQIPNQICQLT-GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVN 714
             G IP+    L+ GL   +   N +       F      S   ++ +RL++  + E +DV 
Sbjct:   639 GFIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFE-IDVK 697

Query:   715 -SIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK 773
              +    Y S +   Q S    G     Y +++     +        +L  +  L+LS N 
Sbjct:   698 FATKQRYDSYIGAFQFSE---GTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNF 754

Query:   774 LTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
             L+  IP    +LQ+I  L++S+N L  SIP   +NL  +   ++S+N LSG IP
Sbjct:   755 LSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIP 808

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 262/898 (29%), Positives = 424/898 (47%)

Query:    22 VILMVVLNQMHGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNW 81
             ++L ++     G    +  +   L E+K   +   + Q +DP L  W  D   + + C+W
Sbjct:     7 LLLFILCFSGLGQPGIINNDLQTLLEVKKSLVT--NPQEDDP-LRQWNSD---NINYCSW 60

Query:    82 KGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYG--DMVLSLNVS---LFHPFE------- 129
              GV C+  TG    + LN T   +  S +  +G  D ++ L++S   L  P         
Sbjct:    61 TGVTCD-NTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLT 119

Query:   130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILR 189
              L+SL L +N   G   +Q    LGSL  ++ L +G N     I   L  L +L  L L 
Sbjct:   120 SLESLFLFSNQLTGEIPSQ----LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALA 175

Query:   190 ENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQ-GICELKNLFVLNLEKNNIEDHLP 248
                + G    Q L +L  +++L L  N++ G + ++ G C   +L V    +N +   +P
Sbjct:   176 SCRLTGPIPSQ-LGRLVRVQSLILQDNYLEGPIPAELGNCS--DLTVFTAAENMLNGTIP 232

Query:   249 NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEV 308
               L  +  L++L+++ N L+G  PS +  ++ L+YL+L  N  +G  P  SLA+   L+ 
Sbjct:   233 AELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIP-KSLADLGNLQT 291

Query:   309 LLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-VIPPFLL-HQFDLKYLDLSHNDLDG 366
             L LS  NN+     E F    QL  L L N  L+  +P  +  +  +L+ L LS   L G
Sbjct:   292 LDLSA-NNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSG 350

Query:   367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT--GKLPQDMGII 424
               P   L     L+ L L+NNS  G++  P+   + +   D+  +N T  G L   +   
Sbjct:   351 EIPV-ELSKCQSLKQLDLSNNSLAGSI--PEALFELVELTDLYLHNNTLEGTLSPSISN- 406

Query:   425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD 484
             L  L ++ + +N+ EG +   I+ +++L  L L +N FSGE+   +  +C SL  + +  
Sbjct:   407 LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI-GNCTSLKMIDMFG 465

Query:   485 NNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG 544
             N+F G I P    L +L  L+L  N+  G +   L    +L  L ++ N LSG IP   G
Sbjct:   466 NHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG 525

Query:   545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKN 604
              L  LE L++  N  +GN+P  L++ R L   ++S N L+G +      SS     +  N
Sbjct:   526 FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNN 585

Query:   605 SLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQ 664
                  IP+ L  S NL  L L  N  +G IP  + +               G IP Q+  
Sbjct:   586 GFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVL 645

Query:   665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSML 724
                L  +DL++N  +G IP     ++   +G L   +L    FVE L           +L
Sbjct:   646 CKKLTHIDLNNNFLSGPIPPWLGKLS--QLGEL---KLSSNQFVESLPTELFNCTKLLVL 700

Query:   725 DMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGS------NLDYMVGLDLSCNKLTGEI 778
              +   S     P     L  +  +  ++ + ++GS       L  +  L LS N LTGEI
Sbjct:   701 SLDGNSLNGSIPQEIGNLGALNVLNLDKNQ-FSGSLPQAMGKLSKLYELRLSRNSLTGEI 759

Query:   779 PSEIGELQEIP-VLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS 837
             P EIG+LQ++   L++S+N  +  IP +   L  +E+LDLSHN+L+G++P  + ++  L 
Sbjct:   760 PVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLG 819

Query:   838 NFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEIPATDSNREEG 895
               NVS+NNL G +  K QF+ +   S+ GN  LCG  +++ CN V       +N+++G
Sbjct:   820 YLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR-CNRVRS-----NNKQQG 869

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 8.7e-75, P = 8.7e-75
 Identities = 261/858 (30%), Positives = 398/858 (46%)

Query:    45 LSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQL----LLND 100
             L E+K+ FI       E+ VL  W  + G S   CNW GV C       + L    L   
Sbjct:    33 LLELKNSFIT---NPKEEDVLRDW--NSG-SPSYCNWTGVTCGGREIIGLNLSGLGLTGS 86

Query:   101 TSKFIEYSKNYTYGDM-----VLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGS 155
              S  I    N  + D+     V  +  +L +    L+SL L +N   G   +Q    LGS
Sbjct:    87 ISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQ----LGS 142

Query:   156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
             L  LK L LG N  + +I      L +L  L L    + G    +   +L  L+ L L  
Sbjct:   143 LVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSR-FGRLVQLQTLILQD 201

Query:   216 NFINGSLESQ-GICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
             N + G + ++ G C    LF      N +   LP  LN +  L+ L++  N  SG  PS 
Sbjct:   202 NELEGPIPAEIGNCTSLALFAAAF--NRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQ 259

Query:   275 ISNLTSLEYLALFDNNFEGTFP--LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLK 332
             + +L S++YL L  N  +G  P  L+ LAN   L+ L LS+ NN+  V  E F    QL+
Sbjct:   260 LGDLVSIQYLNLIGNQLQGLIPKRLTELAN---LQTLDLSS-NNLTGVIHEEFWRMNQLE 315

Query:   333 VLRLPNCSLN-VIPPFLL-HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
              L L    L+  +P  +  +   LK L LS   L G  P   + N   L++L L+NN+ T
Sbjct:   316 FLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPA-EISNCQSLKLLDLSNNTLT 374

Query:   391 GNLQLPDDKHDF--LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE 448
             G  Q+PD       L +L +++N+  G L   +   L  L    + +N+ EG +   I  
Sbjct:   375 G--QIPDSLFQLVELTNLYLNNNSLEGTLSSSISN-LTNLQEFTLYHNNLEGKVPKEIGF 431

Query:   449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
             + +L  + L +N FSGE+   +  +C  L  +    N   G I      L  L  L+L  
Sbjct:   432 LGKLEIMYLYENRFSGEMPVEI-GNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRE 490

Query:   509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
             N+  G I   L    ++  + ++ N LSG IP   G L+ LE+ ++  N  +GN+P  L+
Sbjct:   491 NELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLI 550

Query:   569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN 628
             N + L   + S N  +G ++     SS     + +N   G IP+ L +S+NL  L L  N
Sbjct:   551 NLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKN 610

Query:   629 GFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN 688
              F+G IP    + S             G IP ++     L  +DL++N  +G IP+    
Sbjct:   611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query:   689 ITLWSVGNLDRYRLEHLTFVERL--DVNSIGIYYSSMLDMGQLSS---EERGPFTFDYLV 743
             + L  +G L   +L    FV  L  ++ S+    +  LD   L+    +E G       +
Sbjct:   671 LPL--LGEL---KLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL 725

Query:   744 EVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIP-VLNMSHNFLSESI 802
              +E    +         L  +  L LS N LTGEIP EIG+LQ++   L++S+N  +  I
Sbjct:   726 NLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRI 785

Query:   803 PESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES 862
             P + S L  +ESLDLSHN+L G++P ++ ++  L   N+SYNNL G +  K QF+ +   
Sbjct:   786 PSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQAD 843

Query:   863 SYRGNLHLCGPTINKSCN 880
             ++ GN  LCG  ++  CN
Sbjct:   844 AFVGNAGLCGSPLSH-CN 860

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 256/862 (29%), Positives = 396/862 (45%)

Query:    70 DDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDM--VLSLNVSLFHP 127
             D  G +SDCCNW+GV CNA +G VI+L L+ +S    +  N +  ++  + +L++S F+ 
Sbjct:    74 DSWGNNSDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLS-FND 132

Query:   128 FE-----------ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLY 176
             F+            L  LDLS+N F G    Q  +++G+L RL  LNL  N F       
Sbjct:   133 FKGQITSSIENLSHLTYLDLSSNHFSG----QILNSIGNLSRLTYLNLFDNQFSGQAPSS 188

Query:   177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
             +  L+ LT L L  N   G +    +  L +L  L L SN  +G + S  I  L NL  L
Sbjct:   189 ICNLSHLTFLDLSYNRFFG-QFPSSIGGLSHLTTLSLFSNKFSGQIPSS-IGNLSNLTTL 246

Query:   237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
             +L  NN    +P+ + N+++L  L +  N   G  PS   NL  L  L + DN   G FP
Sbjct:   247 DLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFP 306

Query:   297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLP-NCSLNVIPPFLLHQFDLK 355
              + L N + L +L LS  N        N      L       N      P FL     L 
Sbjct:   307 -NVLLNLTGLSLLSLSN-NKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLT 364

Query:   356 YLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTG 415
             Y+ L+ N L G      + + + L  L + NN+F G +     K   L  LDIS  N  G
Sbjct:   365 YIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQG 424

Query:   416 KLPQDMGII--LQKLLYMDMSNNHFEGNIASS--IAEMKELRFLDLSKNNFSGELSAALL 471
               P D  I   L+ LL +++S+ +    I  +  ++  K L  LDLS N+ S    +++ 
Sbjct:   425 --PVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVS 482

Query:   472 TSCFSLLW-LGLSDNNFYGRIFPGYMNLT-QLQYLYLENNKFSGKIEEGLLKSKKLVELR 529
                  L+  L LS        FP ++    +L +L + NNK  G++ + L +   L  + 
Sbjct:   483 DPPSQLIQSLYLSGCGITE--FPEFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYVN 540

Query:   530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT 589
             +S+N L G         S L  LL S N F G IP  +   R L    +S+N  +G +  
Sbjct:   541 LSNNTLIGFQRPSKPEPSLL-YLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPR 599

Query:   590 SFNI--SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSXXXXX 647
                   S++  L L++N LSG +P  +F    L +LD+  N   G +P  ++  S     
Sbjct:   600 CMGHLKSTLSVLNLRQNHLSGGLPKQIFEI--LRSLDVGHNQLVGKLPRSLSFFSTLEVL 657

Query:   648 XXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSI-PSCFTNITLWSVGNLDRYRLEHLT 706
                        P  +  L  L ++ L  N F+G I  + F  + +     +D   + H  
Sbjct:   658 NVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHEATFPELRI-----ID---ISHNR 709

Query:   707 FVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLV-EVEFVTKNRYEVYNGSN-LDYM 764
             F   L      + +S+M  +G+   +    +    L  +   V  N+         L   
Sbjct:   710 FNGTLPTEYF-VKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIY 768

Query:   765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824
               +D S N+  GEIP  IG L+E+ VL++S+N  S  +P S  NL  +ESLD+S N+L+G
Sbjct:   769 TAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTG 828

Query:   825 QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEE 884
             +IP +L +L+FL+  N S+N L+GL+P   QF T + S++  NL L G ++ + C  +  
Sbjct:   829 EIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHT 888

Query:   885 IPATDSNRE--EGDDSAIDMVS 904
              PA+    E  E ++   D++S
Sbjct:   889 -PASHQQFETPETEEEDEDLIS 909

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1688__AT1G74190.1 annotation not avaliable (966 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	911
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-55
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (596), Expect = 4e-64
 Identities = 191/606 (31%), Positives = 282/606 (46%), Gaps = 98/606 (16%)

Query: 302 NHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-----DLKY 356
           N S++  + LS +N   ++        F+L  ++  N S N +   +          L+Y
Sbjct: 67  NSSRVVSIDLSGKNISGKIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF--LHHLDISSNNFT 414
           L+LS+N+  G+ P  ++ N   LE L L+NN  +G  ++P+D   F  L  LD+  N   
Sbjct: 123 LNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLV 177

Query: 415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL--LT 472
           GK+P  +   L  L ++ +++N   G I   + +MK L+++ L  NN SGE+   +  LT
Sbjct: 178 GKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSS 532
           S   L  L L  NN  G I     NL  LQYL+L  NK SG I   +   +KL+ L +S 
Sbjct: 237 S---LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 533 NMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFN 592
           N LSG IP  +  L  LE+L +  N F G IPV L +  RLQ+                 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV----------------- 336

Query: 593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652
                 L L  N  SG IP  L + +NL  LDL  N  +G IP  +    NL  L+L  N
Sbjct: 337 ------LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 653 NLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLD 712
           +LEG+IP  +     L  + L  N F+G +PS FT + L             + F++  +
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-------------VYFLDISN 437

Query: 713 VNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRY--EVYNGSNLDYMVGLDLS 770
            N  G   S   DM  L              ++  + +N++   + +      +  LDLS
Sbjct: 438 NNLQGRINSRKWDMPSL--------------QMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 771 CNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL 830
            N+ +G +P ++G L E+  L +S N LS  IP+  S+ K + SLDLSHN+LSGQIP   
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 831 TELNFLSNFNVSYNNLSGLIPDK------------------------GQFATFDESSYRG 866
           +E+  LS  ++S N LSG IP                          G F   + S+  G
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603

Query: 867 NLHLCG 872
           N+ LCG
Sbjct: 604 NIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  208 bits (530), Expect = 1e-55
 Identities = 185/568 (32%), Positives = 285/568 (50%), Gaps = 40/568 (7%)

Query: 75  SSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFH-PFEELQS 133
           S+D C W+G+ CN ++ RV+ + L+         KN     +   ++ ++F  P+  +Q+
Sbjct: 54  SADVCLWQGITCNNSS-RVVSIDLS--------GKN-----ISGKISSAIFRLPY--IQT 97

Query: 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI 193
           ++LSNN   G   +  + T  S   L+ LNL  N F  SI     ++ +L TL L  N +
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSS---LRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNML 152

Query: 194 QGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNN 253
            G      +    +L+ LDL  N + G + +  +  L +L  L L  N +   +P  L  
Sbjct: 153 SG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQ 210

Query: 254 MTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLST 313
           M  LK + + +N LSG  P  I  LTSL +L L  NN  G  P SSL N   L+ L L  
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLY- 268

Query: 314 RNNMLQVQTENFLPTFQ-LKVLRLPNCSLN-VIPPFLLHQFDLKYLDLSHNDLDGAFPTW 371
             N L       + + Q L  L L + SL+  IP  ++   +L+ L L  N+  G  P  
Sbjct: 269 -QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV- 326

Query: 372 ALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ---DMGIILQKL 428
           AL +  +L+VL L +N F+G +     KH+ L  LD+S+NN TG++P+     G + + +
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 429 LYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY 488
           L+    +N  EG I  S+   + LR + L  N+FSGEL +   T    + +L +S+NN  
Sbjct: 387 LF----SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQ 441

Query: 489 GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSY 548
           GRI     ++  LQ L L  NKF G + +    SK+L  L +S N  SG +P  +G+LS 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 549 LEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSV-EHLYLQKNSLS 607
           L  L +S+N   G IP +L + ++L    +S N LSG +  SF+   V   L L +N LS
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Query: 608 GPIPIALFRSSNLLTLDLRDNGFSGVIP 635
           G IP  L    +L+ +++  N   G +P
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
           GL L    L G IP++I +L+ +  +N+S N +  +IP S  ++  +E LDLS+N  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 826 IPPKLTELNFLSNFNVSYNNLSGLIP 851
           IP  L +L  L   N++ N+LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query: 217 FING-SLESQG--------ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
           FI+G  L++QG        I +L++L  +NL  N+I  ++P  L ++T L+VLD+S+N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 268 SGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           +GS P  +  LTSL  L L  N+  G  P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 3e-10
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
           S L ++  ++LS N + G IP  +G +  + VL++S+N  + SIPES   L  +  L+L+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 819 HNRLSGQIPPKL-------TELNFLSN 838
            N LSG++P  L          NF  N
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 623 LDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSI 682
           L L + G  G IP+ I++  +L+ + L GN++ G IP  +  +T L ++DLS+N FNGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 683 PSCFTNITLWSVGNLDRYRL 702
           P     +T   + NL+   L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 79/296 (26%), Positives = 110/296 (37%), Gaps = 44/296 (14%)

Query: 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNI-EDHLPNCLNNMTR---LKVLDISFNQ 266
           L L    +     ++ + +L  L VL LE N + E+      + +     LK L +S N+
Sbjct: 3   LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62

Query: 267 LSGSFPSIIS------NLTSLEYLALFDNNF--EGTFPLSSLANHSKLEVLLLSTRNNML 318
                  + S          L+ L L DN    +G   L SL   S L+ L L   NN L
Sbjct: 63  TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKL--NNNGL 120

Query: 319 QVQTENFL------PTFQLKVLRLPNCSLNVIPPF-----LLHQFDLKYLDLSHNDL-DG 366
             +    L          L+ L L    L           L    DLK L+L++N + D 
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 367 AFPTWA--LQNNTKLEVLLLTNNSFT--GNLQL----PDDKHDFLHHLDISSNNFTG--- 415
                A  L+ N  LEVL L NN  T  G   L       K   L  L++  NN T    
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK--SLEVLNLGDNNLTDAGA 238

Query: 416 -KLPQDMGIILQKLLYMDMSNNHFE----GNIASSIAEMKELRFLDLSKNNFSGEL 466
             L   +      LL + +S N        ++A  +AE + L  LDL  N F  E 
Sbjct: 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.1 bits (140), Expect = 1e-08
 Identities = 78/282 (27%), Positives = 113/282 (40%), Gaps = 18/282 (6%)

Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
               + +  +   +      L+ LDLS+N  E          L +L  LK L+L +N   
Sbjct: 122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLS 176

Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
           D   L  N L++L  L L  N I  S     +  L  LE LDLS+N I   L S     L
Sbjct: 177 DLPKLLSN-LSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSN--L 231

Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
           KNL  L L  N +ED LP  + N++ L+ LD+S NQ+  S  S + +LT+L  L     +
Sbjct: 232 KNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLREL-----D 283

Query: 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLH 350
             G    ++L   + L +LL    N +L ++         L    + +      P  L  
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSI 343

Query: 351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGN 392
              L  L    N LD +     +  N      LL       N
Sbjct: 344 LESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVN 385

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)

Query: 583 LSGFMTTSFNISSVEHLY---LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQIN 639
           L GF+    +IS + HL    L  NS+ G IP +L   ++L  LDL  N F+G IP  + 
Sbjct: 430 LRGFIPN--DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487

Query: 640 ECSNLRFLLLRGNNLEGQIP 659
           + ++LR L L GN+L G++P
Sbjct: 488 QLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563
           L L+N    G I   + K + L  + +S N + G+IP  +G+++ LEVL +S N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 564 PVQLLNHRRLQLFSVSENYLSG 585
           P  L     L++ +++ N LSG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 72/268 (26%), Positives = 105/268 (39%), Gaps = 14/268 (5%)

Query: 152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL 211
              SL RL  L+L       S+    N L  L    L  N  +       L +L NL +L
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSL 121

Query: 212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSF 271
           DL +N I   +         NL  L+L  N IE  LP+ L N+  LK LD+SFN LS   
Sbjct: 122 DLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 272 PSIISNLTSLEYLALFDNNFEGTFPLSSLANH-SKLEVLLLSTRNNMLQVQTENFLPTFQ 330
           P ++SNL++L  L L  N      P   L +   +L++   S    +  +     L   +
Sbjct: 179 PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238

Query: 331 LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
           L   +L +   ++     L   DL    +S           +L + T L  L L+ NS +
Sbjct: 239 LSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--------SLGSLTNLRELDLSGNSLS 290

Query: 391 GNLQLPDDKHDFLHHLDISSNNFTGKLP 418
               LP      L    + +   T K  
Sbjct: 291 NA--LPLIALLLLLLELLLNLLLTLKAL 316

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 51/193 (26%), Positives = 73/193 (37%), Gaps = 28/193 (14%)

Query: 123 SLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD----SIFLYLN 178
            L      L+ L L  N  EG         L + + LK LNL  N   D    ++   L 
Sbjct: 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190

Query: 179 ALTSLTTLILRENNIQ---GSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKN--- 232
           A  +L  L L  N +     S   + L+ LK+LE L+L  N    +L   G   L +   
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN----NLTDAGAAALASALL 246

Query: 233 -----LFVLNLEKNNIEDH----LPNCLNNMTRLKVLDISFNQLSG-----SFPSIISNL 278
                L  L+L  N+I D     L   L     L  LD+  N+           S++   
Sbjct: 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306

Query: 279 TSLEYLALFDNNF 291
             LE L + D++F
Sbjct: 307 NELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 13/182 (7%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
           L SLDL+ N             L  L  L  L+L  N   D   L     ++L  L L +
Sbjct: 95  LPSLDLNLNRLRS-----NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
           N I        L  L NL+ LDLS N ++   +   +  L NL  L+L  N I D LP  
Sbjct: 150 NKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLSNLNNLDLSGNKISD-LPPE 204

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
           +  ++ L+ LD+S N +     S +SNL +L  L L +N  +      S+ N S LE L 
Sbjct: 205 IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN--KLEDLPESIGNLSNLETLD 261

Query: 311 LS 312
           LS
Sbjct: 262 LS 263

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 7e-07
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)

Query: 382 LLLTNNSFTGNLQLPDDKHDFLHHL---DISSNNFTGKLPQDMGIILQKLLYMDMSNNHF 438
           L L N    G   +P+D    L HL   ++S N+  G +P  +G I   L  +D+S N F
Sbjct: 423 LGLDNQGLRG--FIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSF 478

Query: 439 EGNIASSIAEMKELRFLDLSKNNFSGELSAAL 470
            G+I  S+ ++  LR L+L+ N+ SG + AAL
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 8e-07
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 402 FLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNN 461
           F+  L + +    G +P D+   L+ L  +++S N   GNI  S+  +  L  LDLS N+
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 462 FSGELSAAL--LTSCFSLLWLGLSDNNFYGRI 491
           F+G +  +L  LT   SL  L L+ N+  GR+
Sbjct: 478 FNGSIPESLGQLT---SLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 535 LSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NI 593
           L G IP+ +  L +L+ + +S N   GNIP  L +   L++  +S N  +G +  S   +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 594 SSVEHLYLQKNSLSGPIPIAL 614
           +S+  L L  NSLSG +P AL
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 61/236 (25%), Positives = 86/236 (36%), Gaps = 53/236 (22%)

Query: 131 LQSLDLSNNSF-----EGVYENQAYDTLGSLK-----------------------RLKIL 162
           LQ LDLS+N+        +       +L  LK                        L+ L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 163 NLGYN--YFDDSIFL--YLNALTSLTTLILRENNIQGS---RTKQGLSKLKNLEALDLSS 215
            LG N         L   L A   L  L L  N I  +      +GL    NLE LDL++
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 216 NFINGSLESQGICE----LKNLFVLNLEKNNIEDH-----LPNCLNNMTRLKVLDISFNQ 266
           N +     +  + E    LK+L VLNL  NN+ D          L+    L  L +S N 
Sbjct: 203 NGLT-DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 267 L----SGSFPSIISNLTSLEYLALFDNNF--EGTFPLSS--LANHSKLEVLLLSTR 314
           +    +     +++   SL  L L  N F  EG   L+   L   ++LE L +   
Sbjct: 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
              LQS++LS NS  G        +LGS+  L++L+L YN F+ SI   L  LTSL  L 
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 188 LRENNIQG 195
           L  N++ G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 202 LSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLD 261
           +SKL++L++++LS N I G++    +  + +L VL+L  N+    +P  L  +T L++L+
Sbjct: 438 ISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 262 ISFNQLSGSFPS 273
           ++ N LSG  P+
Sbjct: 497 LNGNSLSGRVPA 508

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPES-FSNLKMIESLDL 817
           +N   +V +DLS   ++G+I S I  L  I  +N+S+N LS  IP+  F+    +  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 818 SHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP-DKGQFAT 858
           S+N  +G IP     +  L   ++S N LSG IP D G F++
Sbjct: 126 SNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 596 VEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLE 655
           ++ L L    L G IP  + +  +L +++L  N   G IP  +   ++L  L L  N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 656 GQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
           G IP  + QLT L +++L+ N  +G +P+
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 28/88 (31%), Positives = 38/88 (43%)

Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHI 539
           LGL +    G I      L  LQ + L  N   G I   L     L  L +S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 540 PHWMGNLSYLEVLLMSKNFFEGNIPVQL 567
           P  +G L+ L +L ++ N   G +P  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 38 LKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCN 87
          L  +R AL   KS              L++W      SSD C+W GV C+
Sbjct: 1  LNDDRDALLAFKSSL-----NGDPSGALSSWNPS---SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHI 539
           + LS N+  G I P   ++T L+ L L  N F+G I E L +   L  L ++ N LSG +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 540 PHWMG 544
           P  +G
Sbjct: 507 PAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
           NL  L+L  N +          +  LKVLD+S N L+   P   S L SL  L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 595 SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL 654
           +++ L L  N L+     A     NL  LDL  N  + + P   +   +LR L L GNNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 62/256 (24%), Positives = 95/256 (37%), Gaps = 25/256 (9%)

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
            ++++RL  LD+       S     + L  L   +L  N       +S L   + L  L 
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 311 LSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPT 370
           L   NN+  +     L    LK L L +  +  +P  L +  +LK LDLS NDL      
Sbjct: 123 LD-NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--P 179

Query: 371 WALQNNTKLEVLLLTNN--------------------SFTGNLQLPDDKHDFLHHLDISS 410
             L N + L  L L+ N                    S    ++L     +  +   +  
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL 239

Query: 411 NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL 470
           +N   +   +    L  L  +D+SNN  + +  SS+  +  LR LDLS N+ S  L    
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 471 LTSCFSLLWLGLSDNN 486
           L      L L L    
Sbjct: 298 LLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           L L+   +   +PN ++ +  L+ +++S N + G+ P  + ++TSLE L L  N+F G+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 296 PLSSLANHSKLEVLLL 311
           P  SL   + L +L L
Sbjct: 483 P-ESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF 678
           NL +LDL +N  + +         NL+ L L GNNL    P     L  L  +DLS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI 193
           L L N    G   N     +  L+ L+ +NL  N    +I   L ++TSL  L L  N+ 
Sbjct: 423 LGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 194 QGSRTKQGLSKLKNLEALDLSSNFINGSL 222
            GS   + L +L +L  L+L+ N ++G +
Sbjct: 479 NGS-IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
           LDLS NK+   +PS +  L  +  L++S N LS+ +P+  SNL  + +LDLS N++S  +
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 827 PPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGVEEI 885
           PP++  L+ L   ++S N++  L+                N     P    + + +E +
Sbjct: 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 182 SLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKN 241
           +L +L L  N +           L NL+ LDLS N +  S+  +    L +L  L+L  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGN 58

Query: 242 NI 243
           N+
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
           LDLS N+LT         L  + VL++S N L+   PE+FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 207 NLEALDLSSNFI----NGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI 262
           NL++LDLS+N +    +G+ +      L NL VL+L  NN+    P   + +  L+ LD+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKG-----LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Query: 263 SFNQL 267
           S N L
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNS 388
            LK L L N  L VIP         LK LDLS N+L    P  A      L  L L+ N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE-AFSGLPSLRSLDLSGNN 59

Query: 389 F 389
            
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	911
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.47
PLN03150	623	hypothetical protein; Provisional	99.44
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.87
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
KOG4341	483	consensus F-box protein containing LRR [General fu	97.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
KOG4341	483	consensus F-box protein containing LRR [General fu	97.55
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.06
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.55
KOG4308	478	consensus LRR-containing protein [Function unknown	92.06
KOG4308	478	consensus LRR-containing protein [Function unknown	91.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.38
smart00370	26	LRR Leucine-rich repeats, outliers.	86.38
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.13
smart00370	26	LRR Leucine-rich repeats, outliers.	83.13

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.9e-72  Score=701.21  Aligned_cols=584  Identities=34%  Similarity=0.523  Sum_probs=420.1

Q ss_pred             hHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeecCCCCcEEEEecCCCCcccccccccccCCcc
Q 043567           38 LKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMV  117 (911)
Q Consensus        38 ~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~  117 (911)
                      .++|++||++||+++.      +|.+.+++|...    .+||.|.||+|+. .++|+.++|++..+              
T Consensus        27 ~~~~~~~l~~~~~~~~------~~~~~~~~w~~~----~~~c~w~gv~c~~-~~~v~~L~L~~~~i--------------   81 (968)
T PLN00113         27 HAEELELLLSFKSSIN------DPLKYLSNWNSS----ADVCLWQGITCNN-SSRVVSIDLSGKNI--------------   81 (968)
T ss_pred             CHHHHHHHHHHHHhCC------CCcccCCCCCCC----CCCCcCcceecCC-CCcEEEEEecCCCc--------------
Confidence            4689999999999984      456678999754    7899999999985 56888877766543              


Q ss_pred             cccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCcc
Q 043567          118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSR  197 (911)
Q Consensus       118 ~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  197 (911)
                                              ++.++    ..+..+++|++|++++|.+.+.+|.                      
T Consensus        82 ------------------------~~~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~----------------------  111 (968)
T PLN00113         82 ------------------------SGKIS----SAIFRLPYIQTINLSNNQLSGPIPD----------------------  111 (968)
T ss_pred             ------------------------cccCC----hHHhCCCCCCEEECCCCccCCcCCh----------------------
Confidence                                    22222    3344455555555555554444433                      


Q ss_pred             ChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccC
Q 043567          198 TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN  277 (911)
Q Consensus       198 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  277 (911)
                        ..+.++++|++|+|++|.+++.+|.   +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+++
T Consensus       112 --~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  186 (968)
T PLN00113        112 --DIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN  186 (968)
T ss_pred             --HHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh
Confidence              3333444555555555554444442   23455555555555555555555556666666666666655555555556


Q ss_pred             CCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEE
Q 043567          278 LTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL  357 (911)
Q Consensus       278 l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L  357 (911)
                      +++|++|++++|.+.+.+|. .+                                                ..+.+|++|
T Consensus       187 l~~L~~L~L~~n~l~~~~p~-~l------------------------------------------------~~l~~L~~L  217 (968)
T PLN00113        187 LTSLEFLTLASNQLVGQIPR-EL------------------------------------------------GQMKSLKWI  217 (968)
T ss_pred             CcCCCeeeccCCCCcCcCCh-HH------------------------------------------------cCcCCccEE
Confidence            66666666655555544331 11                                                122233334


Q ss_pred             ECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCc
Q 043567          358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH  437 (911)
Q Consensus       358 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  437 (911)
                      ++++|.+++.+|..+.                         .+++|++|++++|.+++.+|..+.. +++|++|++++|.
T Consensus       218 ~L~~n~l~~~~p~~l~-------------------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~  271 (968)
T PLN00113        218 YLGYNNLSGEIPYEIG-------------------------GLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNK  271 (968)
T ss_pred             ECcCCccCCcCChhHh-------------------------cCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCe
Confidence            4444444444443221                         2334555555666665555555543 5555555555555


Q ss_pred             cccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccc
Q 043567          438 FEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEE  517 (911)
Q Consensus       438 l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  517 (911)
                      +++.+|..+.++++|++|++++|.+.+.                         +|..+.++++|+.|++++|.+++.+|.
T Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-------------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        272 LSGPIPPSIFSLQKLISLDLSDNSLSGE-------------------------IPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             eeccCchhHhhccCcCEEECcCCeeccC-------------------------CChhHcCCCCCcEEECCCCccCCcCCh
Confidence            5555555555555555555555555544                         444455566667777777777666676


Q ss_pred             cccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccc
Q 043567          518 GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSV  596 (911)
Q Consensus       518 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L  596 (911)
                      .+..+++|++|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|+.+++++|.+.+.+|..+ .+++|
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            67777777777777777777777777777777777777777777777777777777777777777777777666 67788


Q ss_pred             cEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCC
Q 043567          597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN  676 (911)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N  676 (911)
                      +.|++++|++++.+|..+..++.|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n  485 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRN  485 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCC
Confidence            888888888888888888899999999999999999999888899999999999999999888765 4588999999999


Q ss_pred             cCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeec
Q 043567          677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVY  756 (911)
Q Consensus       677 ~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  756 (911)
                      +++|.+|..+.++                                                                   
T Consensus       486 ~l~~~~~~~~~~l-------------------------------------------------------------------  498 (968)
T PLN00113        486 QFSGAVPRKLGSL-------------------------------------------------------------------  498 (968)
T ss_pred             ccCCccChhhhhh-------------------------------------------------------------------
Confidence            9999888766543                                                                   


Q ss_pred             cCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCC
Q 043567          757 NGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFL  836 (911)
Q Consensus       757 ~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  836 (911)
                           +.|+.|++++|+++|.+|+.++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|
T Consensus       499 -----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  573 (968)
T PLN00113        499 -----SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL  573 (968)
T ss_pred             -----hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence                 357789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCcCeecCCCCCCCCccCccccCCCCCCCCCc
Q 043567          837 SNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPT  874 (911)
Q Consensus       837 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  874 (911)
                      +++++++|+++|.+|..++|.+|.+.+|.||+++||.+
T Consensus       574 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.7e-58  Score=574.69  Aligned_cols=513  Identities=34%  Similarity=0.527  Sum_probs=408.1

Q ss_pred             CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccC-CCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567          207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLN-NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA  285 (911)
Q Consensus       207 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  285 (911)
                      +++.|||++|.++|.++. .+..+++|++|+|++|.+++.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            455555555555544433 345555555555555555444444332 444455555544444444432  2233444444


Q ss_pred             ccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567          286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD  365 (911)
Q Consensus       286 L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~  365 (911)
                      +++|.+++.                                                 +|..+..+++|++|++++|.+.
T Consensus       147 Ls~n~~~~~-------------------------------------------------~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113        147 LSNNMLSGE-------------------------------------------------IPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             CcCCccccc-------------------------------------------------CChHHhcCCCCCEEECccCccc
Confidence            444433332                                                 3344445556666666777766


Q ss_pred             CCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchh
Q 043567          366 GAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS  445 (911)
Q Consensus       366 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~  445 (911)
                      +.+|..+. ++                        ++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..
T Consensus       178 ~~~p~~~~-~l------------------------~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~  231 (968)
T PLN00113        178 GKIPNSLT-NL------------------------TSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYE  231 (968)
T ss_pred             ccCChhhh-hC------------------------cCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChh
Confidence            66665432 44                        44555555555565666766653 777777777777777777777


Q ss_pred             hhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCC
Q 043567          446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL  525 (911)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  525 (911)
                      ++++++|++|++++|.+++.+|..+ ..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             HhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            7777888888888887777777653 567788888888888887788888889999999999999999999999999999


Q ss_pred             cEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccC
Q 043567          526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKN  604 (911)
Q Consensus       526 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n  604 (911)
                      ++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+ .+++|+.|++++|
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999887 8899999999999


Q ss_pred             cccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCc
Q 043567          605 SLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS  684 (911)
Q Consensus       605 ~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  684 (911)
                      ++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             ccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccc
Q 043567          685 CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYM  764 (911)
Q Consensus       685 ~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  764 (911)
                      .+.                                                                         .+.|
T Consensus       471 ~~~-------------------------------------------------------------------------~~~L  477 (968)
T PLN00113        471 SFG-------------------------------------------------------------------------SKRL  477 (968)
T ss_pred             ccc-------------------------------------------------------------------------cccc
Confidence            432                                                                         1357


Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567          765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN  844 (911)
Q Consensus       765 ~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  844 (911)
                      +.||+++|+++|.+|..+.++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..+..++.|++|++++|
T Consensus       478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  557 (968)
T PLN00113        478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN  557 (968)
T ss_pred             eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeecCCCC-CCCCccCccccCCCCCCC
Q 043567          845 NLSGLIPDK-GQFATFDESSYRGNLHLC  871 (911)
Q Consensus       845 ~l~g~iP~~-~~~~~~~~~~~~gn~~lc  871 (911)
                      +++|.+|.. ..+..+....+.+|+..+
T Consensus       558 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        558 QLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cccccCChhHhcCcccCEEeccCCccee
Confidence            999999976 344555555667777554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-41  Score=344.20  Aligned_cols=479  Identities=27%  Similarity=0.412  Sum_probs=299.9

Q ss_pred             hcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCC
Q 043567          202 LSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL  281 (911)
Q Consensus       202 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  281 (911)
                      ...-.-|+.+++++|.+. .+.. .+.++..|.+|++.+|+++. .|++++.+.+++.++.++|+++ .+|+.++.+.+|
T Consensus        41 wW~qv~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l  116 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL  116 (565)
T ss_pred             hhhhcchhhhhhccCchh-hccH-hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence            334456777788888776 3333 36777777777777777776 5667777777777777777777 667777777777


Q ss_pred             CeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCC
Q 043567          282 EYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSH  361 (911)
Q Consensus       282 ~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~  361 (911)
                      +.++.+.|.+. ++| ..++.+..++                         .++..+|++.++|+.+..+.++..+++.+
T Consensus       117 ~~l~~s~n~~~-el~-~~i~~~~~l~-------------------------dl~~~~N~i~slp~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELP-DSIGRLLDLE-------------------------DLDATNNQISSLPEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             hhhhcccccee-ecC-chHHHHhhhh-------------------------hhhccccccccCchHHHHHHHHHHhhccc
Confidence            77777777765 333 1233332222                         22333444555555555555555555555


Q ss_pred             CCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccc
Q 043567          362 NDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGN  441 (911)
Q Consensus       362 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~  441 (911)
                      |.+. ..|+... +++.|+                        +||.-.|-++ .+|+.++. +.+|..|++..|++. .
T Consensus       170 n~l~-~l~~~~i-~m~~L~------------------------~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~  220 (565)
T KOG0472|consen  170 NKLK-ALPENHI-AMKRLK------------------------HLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-F  220 (565)
T ss_pred             cchh-hCCHHHH-HHHHHH------------------------hcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-c
Confidence            5554 2232222 133333                        3333333332 56666653 666666666666665 3


Q ss_pred             cchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccC
Q 043567          442 IASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK  521 (911)
Q Consensus       442 ~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  521 (911)
                      .| +|..|..|+++.++.|++. .+|++..+.++++.+||+                        .+|+++ .+|+.++.
T Consensus       221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL------------------------RdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL------------------------RDNKLK-EVPDEICL  273 (565)
T ss_pred             CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec------------------------cccccc-cCchHHHH
Confidence            44 5666666666666666665 666665555555555554                        445444 45555555


Q ss_pred             CCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCC---CcEEE-------ccCc---------c
Q 043567          522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR---LQLFS-------VSEN---------Y  582 (911)
Q Consensus       522 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~---L~~L~-------ls~n---------~  582 (911)
                      +.+|++||+++|.++ .+|..++++ +|+.|.+.+|.+. .+-..+-+...   |++|.       ++.-         .
T Consensus       274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            555666666666555 445556665 5666666666544 22222211110   11110       0000         0


Q ss_pred             cccccCcccccccccEEEcccCcccccccccccCCCC---CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC
Q 043567          583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSN---LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP  659 (911)
Q Consensus       583 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip  659 (911)
                      ..+..|......+.+.|+++.-+++ .+|..++....   .+..+++.|++. ++|..+..+..+.+.-+.+|+..+-+|
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~  428 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP  428 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch
Confidence            1111122224556778888888877 66766655544   778888888888 778887777776654444444445888


Q ss_pred             hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccc
Q 043567          660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF  739 (911)
Q Consensus       660 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  739 (911)
                      ..++.+++|..|+|++|.+. .+|..++.+                                                  
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l--------------------------------------------------  457 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSL--------------------------------------------------  457 (565)
T ss_pred             HHHHhhhcceeeecccchhh-hcchhhhhh--------------------------------------------------
Confidence            88888888888898888776 566554432                                                  


Q ss_pred             ccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccC
Q 043567          740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH  819 (911)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  819 (911)
                                            ..|+.||+|.|+|. .+|+++..+..++.+-.++|++....|+.+.+|.+|..|||.+
T Consensus       458 ----------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  458 ----------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             ----------------------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence                                  24677899999887 8888888888888888888999877777799999999999999


Q ss_pred             CcCcccCCCCCCCCCCCCeEeccCCcCe
Q 043567          820 NRLSGQIPPKLTELNFLSNFNVSYNNLS  847 (911)
Q Consensus       820 N~l~g~ip~~l~~l~~L~~L~ls~N~l~  847 (911)
                      |.+. .||+.++++++|++|++++|++.
T Consensus       515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             Cchh-hCChhhccccceeEEEecCCccC
Confidence            9998 78889999999999999999988

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.8e-41  Score=340.83  Aligned_cols=481  Identities=25%  Similarity=0.347  Sum_probs=314.2

Q ss_pred             CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567          129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL  208 (911)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  208 (911)
                      ..++.|++++|.+....+     .+.++..|.+|++++|++. ..|++++.+..++.++.++|.++ .+| ..+..+.+|
T Consensus        45 v~l~~lils~N~l~~l~~-----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRE-----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhhccH-----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhh
Confidence            345666677776654433     4556666666666666655 34555555555555555555554 344 334555555


Q ss_pred             CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccC
Q 043567          209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD  288 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  288 (911)
                      +.+++++|.+. .++++ ++.+..|+.++..+|+++. .|+++..+.+|..+++.+|++....|..+. ++.|++||...
T Consensus       117 ~~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             hhhhcccccee-ecCch-HHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence            55555555554 34332 4445555555555555544 344455555555555555554432222222 44444444444


Q ss_pred             CcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCC
Q 043567          289 NNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAF  368 (911)
Q Consensus       289 n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~  368 (911)
                      |.+                                                  +++|+.++.+.+|+.|++.+|.+. .+
T Consensus       193 N~L--------------------------------------------------~tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  193 NLL--------------------------------------------------ETLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             hhh--------------------------------------------------hcCChhhcchhhhHHHHhhhcccc-cC
Confidence            444                                                  444444444444444444444443 33


Q ss_pred             chhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhc
Q 043567          369 PTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE  448 (911)
Q Consensus       369 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  448 (911)
                      |.  |.+++.|+.+++..|.+.-........++++.+||+.+|+++ ++|++++. +++|++||+++|.++ ..|.++++
T Consensus       222 Pe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgn  296 (565)
T KOG0472|consen  222 PE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGN  296 (565)
T ss_pred             CC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCccccc
Confidence            42  234444555555554444221111224555666666666666 88999875 889999999999998 56778999


Q ss_pred             CCCCcEEeccCcccCCcccHHHHhcccc--cceee-------ccCcccc----c----ccCCCCCCCCCCCEEEccCccc
Q 043567          449 MKELRFLDLSKNNFSGELSAALLTSCFS--LLWLG-------LSDNNFY----G----RIFPGYMNLTQLQYLYLENNKF  511 (911)
Q Consensus       449 l~~L~~L~Ls~n~l~g~i~~~~~~~~~~--L~~L~-------L~~n~l~----~----~~~~~~~~l~~L~~L~L~~n~l  511 (911)
                      + .|+.|.+.+|.+. +|-.++...-+.  |++|.       ++.-.-.    .    ...+....+.+.+.|++++-++
T Consensus       297 l-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql  374 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL  374 (565)
T ss_pred             c-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence            9 8999999999886 555554322111  22221       1111000    0    0111223456788999999999


Q ss_pred             cccccccccCCCC---CcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccC
Q 043567          512 SGKIEEGLLKSKK---LVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMT  588 (911)
Q Consensus       512 ~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~  588 (911)
                      + .+|+.......   .+.++++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+...+.
T Consensus       375 t-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~  452 (565)
T KOG0472|consen  375 T-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE  452 (565)
T ss_pred             c-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence            8 56665544444   889999999998 788888887777665444555555899999999999999999998887666


Q ss_pred             cccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCC
Q 043567          589 TSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL  668 (911)
Q Consensus       589 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L  668 (911)
                      +.+.+..|+.++++.|+|. .+|..+.....++.+-.++|++...-|+.+.++.+|.+|||.+|.+. +||..++++++|
T Consensus       453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL  530 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL  530 (565)
T ss_pred             hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence            6668888999999999997 78999998889999999999999777778999999999999999998 899999999999


Q ss_pred             CeEEcCCCcCCCCCCcc
Q 043567          669 GMMDLSHNKFNGSIPSC  685 (911)
Q Consensus       669 ~~L~Ls~N~l~g~ip~~  685 (911)
                      ++|+|++|+|.  .|..
T Consensus       531 ~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  531 RHLELDGNPFR--QPRH  545 (565)
T ss_pred             eEEEecCCccC--CCHH
Confidence            99999999997  5543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-36  Score=315.99  Aligned_cols=364  Identities=25%  Similarity=0.263  Sum_probs=224.4

Q ss_pred             cEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEecc
Q 043567          160 KILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE  239 (911)
Q Consensus       160 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  239 (911)
                      +.||+++|.++...+..|.++++|+.+++..|.++ .+| .......+|+.|+|.+|.|+ ++..+.+..++.|++|||+
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP-~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIP-RFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcc-cccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence            44666666666666666666666666666666665 455 22233344666666666665 5555556666666666666


Q ss_pred             CCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcccc
Q 043567          240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ  319 (911)
Q Consensus       240 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~  319 (911)
                      .|.|+.+....|..-.++++|+|++|.|+......|.++.+|..|.|++|+++ ++|...|.++++|+.|+|.. +.+..
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnr-N~iri  235 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNR-NRIRI  235 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccc-cceee
Confidence            66666654455665566666666666666665666666666666666666666 66666666666666666643 22333


Q ss_pred             ccccCcCCCCCceEEECCCCCCCCCChhhh-ccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCC
Q 043567          320 VQTENFLPTFQLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD  398 (911)
Q Consensus       320 ~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  398 (911)
                      +....|.++++|+.|.+..|.+..+.+..+ .+.++++|+|+.|+++..--.|++ ++++|+.|+|++|.+.......+.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhh
Confidence            344466777777777777777766665443 455777788887777755555666 677777777777777655444445


Q ss_pred             CCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCccc--HHHHhcccc
Q 043567          399 KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS--AALLTSCFS  476 (911)
Q Consensus       399 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~--~~~~~~~~~  476 (911)
                      .+++|++|+|++|+++ .+++.-+..+..|++|.|++|.+...-...|..+++|++|||++|.+++.|.  +..|.++++
T Consensus       315 ftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             hcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            6666666666666666 5555555556666666666666665555556666666666666666654443  233445555


Q ss_pred             cceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECc
Q 043567          477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMS  531 (911)
Q Consensus       477 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  531 (911)
                      |+.|++.+|++..+...+|..+++|++|+|.+|.|-.+-|..|..+ .|++|.+.
T Consensus       394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            5555555555555545555555555555555555555555555554 55555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=311.20  Aligned_cols=363  Identities=23%  Similarity=0.258  Sum_probs=201.5

Q ss_pred             cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567          404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS  483 (911)
Q Consensus       404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~  483 (911)
                      +.|++++|.+. .+....+..+++|+++++..|.++ .+|.......+|+.|+|.+|.|+ ++..+-+..++.|+.|||+
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence            34555555554 233333334555555555555555 44544444444555555555554 4444444555555555555


Q ss_pred             CcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccccc
Q 043567          484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI  563 (911)
Q Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  563 (911)
                      .|.++....+.|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            55555554455555555666666666666555555555556666666666666444455555666666666666655322


Q ss_pred             chhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCC
Q 043567          564 PVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS  642 (911)
Q Consensus       564 p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~  642 (911)
                      -..|.++++|+.+.+..|.++..-...| .+..+++|+|..|+++..-..++.+++.|+.|+||+|.+...-++.+.-++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            3445556666666666666655555555 566666666666666554455556666666666666666655555666666


Q ss_pred             CccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccccccccc
Q 043567          643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSS  722 (911)
Q Consensus       643 ~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~  722 (911)
                      +|++|+|++|+|+..-+++|..+..|++|.|++|+++..--..|.                                   
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-----------------------------------  362 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-----------------------------------  362 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-----------------------------------
Confidence            666666666666655555566666666666666655411111110                                   


Q ss_pred             ccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCc---cccCCCCCCEEECCCCcCC
Q 043567          723 MLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPS---EIGELQEIPVLNMSHNFLS  799 (911)
Q Consensus       723 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~i~~l~~L~~L~Ls~N~l~  799 (911)
                                                           .+.+|..|||++|.+++.|.+   .+..|++|+.|+|.+|++.
T Consensus       363 -------------------------------------~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  363 -------------------------------------GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             -------------------------------------HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence                                                 123455566666666555443   3445666666666666665


Q ss_pred             ccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       800 g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      ...-.+|..+.+||.|||.+|.|...-|..|..+ .|+.|-+.
T Consensus       406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            4444556666666666666666665666666555 45554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-35  Score=329.79  Aligned_cols=415  Identities=27%  Similarity=0.300  Sum_probs=218.5

Q ss_pred             EeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567          211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN  290 (911)
Q Consensus       211 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  290 (911)
                      +|++..++. .||...+ .-..++.|+++.|.+-...-+.+.+.-+|+.||+++|++. ..|..+..+..|+.|+++.|.
T Consensus         3 vd~s~~~l~-~ip~~i~-~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQIL-NNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCc-ccchhhc-cHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            344445544 4554322 2222556666666554422233344445666777666665 566666666667777776666


Q ss_pred             CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCch
Q 043567          291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPT  370 (911)
Q Consensus       291 l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~  370 (911)
                      +. ..| ....++                         .+|+++.|.+|.+..+|..+..+.+|++|+++.|.+. .+|.
T Consensus        80 i~-~vp-~s~~~~-------------------------~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl  131 (1081)
T KOG0618|consen   80 IR-SVP-SSCSNM-------------------------RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPL  131 (1081)
T ss_pred             Hh-hCc-hhhhhh-------------------------hcchhheeccchhhcCchhHHhhhcccccccchhccC-CCch
Confidence            65 444 222222                         3344455556666667777777777777777777775 6666


Q ss_pred             hhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCC
Q 043567          371 WALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMK  450 (911)
Q Consensus       371 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  450 (911)
                      .+. .++.++.+..++|.....    . .-..++.+++..|.+.+.++.++.. ++.  .|++.+|.++   -..+..+.
T Consensus       132 ~i~-~lt~~~~~~~s~N~~~~~----l-g~~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~  199 (1081)
T KOG0618|consen  132 VIE-VLTAEEELAASNNEKIQR----L-GQTSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLA  199 (1081)
T ss_pred             hHH-hhhHHHHHhhhcchhhhh----h-ccccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhcc
Confidence            544 566666666666621111    1 1112666667777666666666542 333  4777777765   22345566


Q ss_pred             CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567          451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM  530 (911)
Q Consensus       451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  530 (911)
                      +|+.|....|++. .+.    -.-++|+.|+.++|.++...+.  ..-.+|+++++++|+++ .+|++++.+.+|+.++.
T Consensus       200 ~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~  271 (1081)
T KOG0618|consen  200 NLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNA  271 (1081)
T ss_pred             chhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecc
Confidence            6777777766665 221    1334555666666655522211  11234555566665555 33455555555666655


Q ss_pred             cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc--ccccccEEEcccCcccc
Q 043567          531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSLSG  608 (911)
Q Consensus       531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~Ls~n~l~~  608 (911)
                      ..|+++ .+|..+...++|+.|.+..|.++ .+|......+.|+.|++..|++...++..+  -..+|..|+.+.|++..
T Consensus       272 n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~  349 (1081)
T KOG0618|consen  272 NHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST  349 (1081)
T ss_pred             cchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence            555554 45555555555555555555555 455555555555555555555555444333  11224444555554442


Q ss_pred             cccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCCh-hhhcCCCCCeEEcCCCcCC
Q 043567          609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN-QICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       609 ~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~  679 (911)
                      ..-..=...+.|+.|.+.+|.++...-..+.+.+.|++|+|++|++. .+|+ .+.++..|+.|+||+|+++
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence            11111112334555555555555444444455555555555555554 2332 2344555555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=327.89  Aligned_cols=480  Identities=27%  Similarity=0.338  Sum_probs=296.1

Q ss_pred             EeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeC
Q 043567          134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDL  213 (911)
Q Consensus       134 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  213 (911)
                      +|.+.+.+.-++.     .+..-..++.|+++.|.+-...-..+.+.-+|+.||+++|++. ..| ..+..+.+|+.|++
T Consensus         3 vd~s~~~l~~ip~-----~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQLELIPE-----QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNL   75 (1081)
T ss_pred             cccccccCcccch-----hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhccc
Confidence            4556555543322     2233333666666666654333333444444666666666664 344 34556666666666


Q ss_pred             CCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCC
Q 043567          214 SSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEG  293 (911)
Q Consensus       214 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  293 (911)
                      +.|.|. ..|. ...++.+|++++|.+|.+.. .|..+..+++|++||+++|++. .+|..+..++.+..+..++|....
T Consensus        76 s~n~i~-~vp~-s~~~~~~l~~lnL~~n~l~~-lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   76 SRNYIR-SVPS-SCSNMRNLQYLNLKNNRLQS-LPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             chhhHh-hCch-hhhhhhcchhheeccchhhc-CchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence            666665 4553 35666666666666666554 5666666666666666666665 556666666666666666662111


Q ss_pred             ccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCC-CCCChhhhccCCCCEEECCCCCCCCCCchhh
Q 043567          294 TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL-NVIPPFLLHQFDLKYLDLSHNDLDGAFPTWA  372 (911)
Q Consensus       294 ~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~  372 (911)
                      .     ++..                          .++.+++..+.+ ..++..+..+..  .|+|.+|.+. ..   .
T Consensus       152 ~-----lg~~--------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---d  194 (1081)
T KOG0618|consen  152 R-----LGQT--------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---D  194 (1081)
T ss_pred             h-----hccc--------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---h
Confidence            1     1111                          144555555555 445555555544  5777777665 21   1


Q ss_pred             hhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCC
Q 043567          373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKEL  452 (911)
Q Consensus       373 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  452 (911)
                      ...+..|+.+....|++...    ...-++++.|+.+.|.++...+. .  ...+|++++++.|++++ +|++++.+.+|
T Consensus       195 ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~-p--~p~nl~~~dis~n~l~~-lp~wi~~~~nl  266 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH-P--VPLNLQYLDISHNNLSN-LPEWIGACANL  266 (1081)
T ss_pred             hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-c--ccccceeeecchhhhhc-chHHHHhcccc
Confidence            23566777777777766532    12345677777777777622222 1  14577778888887774 45777778888


Q ss_pred             cEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccc-cCCC-CCcEEEC
Q 043567          453 RFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL-LKSK-KLVELRM  530 (911)
Q Consensus       453 ~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~-~L~~L~L  530 (911)
                      +.++..+|.++ .+|..++ ..++|+.|.+..|.+. .+|+....++.|++|+|..|++. .+|+.+ .... .|+.++.
T Consensus       267 e~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  267 EALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNV  342 (1081)
T ss_pred             eEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhh
Confidence            88888888775 6776654 5677777777777775 34555666778888888888877 344432 2222 3666677


Q ss_pred             cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCccccc
Q 043567          531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGP  609 (911)
Q Consensus       531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~  609 (911)
                      +.|++....-..=...+.|+.|.+.+|.++...-+.+.+...|++|++++|++..++...+ ++..|++|+||+|+++ .
T Consensus       343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~  421 (1081)
T KOG0618|consen  343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T  421 (1081)
T ss_pred             hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence            7777662221111225667777777777777766677777777777777777776655555 7777777777777777 6


Q ss_pred             ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccccc-CChhhhcCCCCCeEEcCCCc
Q 043567          610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ-IPNQICQLTGLGMMDLSHNK  677 (911)
Q Consensus       610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-ip~~l~~l~~L~~L~Ls~N~  677 (911)
                      +|..+..+..|++|...+|++. .+| .+..++.|+.+|++.|+++.. +|+..- -++|++||+++|.
T Consensus       422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            7777777777777777777777 566 677777777777777777643 333322 2677777777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.8e-33  Score=299.22  Aligned_cols=283  Identities=23%  Similarity=0.377  Sum_probs=233.2

Q ss_pred             CCCCccEEEccCCcCC-cCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhccccc
Q 043567          399 KHDFLHHLDISSNNFT-GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL  477 (911)
Q Consensus       399 ~~~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L  477 (911)
                      -++..+-+|+++|.++ +.+|..+.+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-.+ ++.++.|
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRL   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhh
Confidence            3455667788888887 567888764 889999999888887 78999999999999999999886 33333 3578899


Q ss_pred             ceeeccCcccccc-cCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccC
Q 043567          478 LWLGLSDNNFYGR-IFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK  556 (911)
Q Consensus       478 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  556 (911)
                      +.+++.+|++... +|+.+..+..|+.|||++|+++ ..|..+...+++-.|+||+|+|..+.-..+.+++.|-+|||++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            9999999988654 7788889999999999999998 7899999999999999999999844445677899999999999


Q ss_pred             cccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCccc-ccccccccCCCCCCEEeCCCCcccccC
Q 043567          557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLS-GPIPIALFRSSNLLTLDLRDNGFSGVI  634 (911)
Q Consensus       557 n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~Ls~N~l~~~~  634 (911)
                      |++. .+|+.+..+..|+.|++++|.+.-.--... .+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            9998 788889999999999999998764322222 5778888888887644 357888999999999999999998 78


Q ss_pred             chhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccc
Q 043567          635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT  690 (911)
Q Consensus       635 p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  690 (911)
                      |+++-++.+|+.|+|++|+|+ .+....+...+|++|+||+|+++ .+|+++.+++
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            999999999999999999998 56666777788999999999998 7888877765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.2e-33  Score=295.09  Aligned_cols=370  Identities=28%  Similarity=0.371  Sum_probs=246.4

Q ss_pred             CCCCCEEeCCCCCCCC-ccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCe
Q 043567          205 LKNLEALDLSSNFING-SLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEY  283 (911)
Q Consensus       205 l~~L~~L~Ls~n~l~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  283 (911)
                      ++-.+-+|+++|.++| ..|. .+..+++++.|.|....+.. +|+.++.+.+|++|.+++|++. .+-..++.++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~-~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPH-DVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCch-hHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            3344556666666663 3333 35666666666666666554 5666666666666666666655 33344555555555


Q ss_pred             eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCC
Q 043567          284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHND  363 (911)
Q Consensus       284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~  363 (911)
                      +++..|++..                                                ..||..++.+..|+.||||+|+
T Consensus        83 v~~R~N~LKn------------------------------------------------sGiP~diF~l~dLt~lDLShNq  114 (1255)
T KOG0444|consen   83 VIVRDNNLKN------------------------------------------------SGIPTDIFRLKDLTILDLSHNQ  114 (1255)
T ss_pred             Hhhhcccccc------------------------------------------------CCCCchhcccccceeeecchhh
Confidence            5555555431                                                2345555555556666666666


Q ss_pred             CCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccc
Q 043567          364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA  443 (911)
Q Consensus       364 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  443 (911)
                      +. +.|..+- ..+++-+|+|++|                        ++. .||..++.+++.|-.|||++|++. .+|
T Consensus       115 L~-EvP~~LE-~AKn~iVLNLS~N------------------------~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LP  166 (1255)
T KOG0444|consen  115 LR-EVPTNLE-YAKNSIVLNLSYN------------------------NIE-TIPNSLFINLTDLLFLDLSNNRLE-MLP  166 (1255)
T ss_pred             hh-hcchhhh-hhcCcEEEEcccC------------------------ccc-cCCchHHHhhHhHhhhccccchhh-hcC
Confidence            55 4554332 3333333333333                        332 556555555666666666666666 455


Q ss_pred             hhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccc-cccCCCCCCCCCCCEEEccCccccccccccccCC
Q 043567          444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY-GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS  522 (911)
Q Consensus       444 ~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  522 (911)
                      +.+..+..|++|+|++|.+. ...-.-+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l  244 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL  244 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence            55666666777777776553 111111224556667777665433 457888888899999999999988 789999999


Q ss_pred             CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccc-ccCccc-ccccccEEE
Q 043567          523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG-FMTTSF-NISSVEHLY  600 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~-~~~~~~-~~~~L~~L~  600 (911)
                      ++|+.|+||+|+|+ .+....+...+|+.|+++.|+++ .+|..++++++|+.|.+.+|+++- -+|+.+ .+..|+.+.
T Consensus       245 ~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~  322 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH  322 (1255)
T ss_pred             hhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence            99999999999988 45555666778999999999998 789999999999999999888763 245545 778888888


Q ss_pred             cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC
Q 043567          601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP  659 (911)
Q Consensus       601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip  659 (911)
                      .++|.+. .+|++++.|..|+.|.|+.|++- .+|+++.-++.|+.||++.|.-.-..|
T Consensus       323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            8888876 77888888888888888888887 678888888888888888887653333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=5.1e-27  Score=239.10  Aligned_cols=420  Identities=19%  Similarity=0.198  Sum_probs=273.0

Q ss_pred             CCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccC-cccCCcccHHHHhc
Q 043567          395 LPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSK-NNFSGELSAALLTS  473 (911)
Q Consensus       395 ~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~g~i~~~~~~~  473 (911)
                      +|..-.+.-..++|..|+++ .||+..+..+++|++|||++|+|+.+-|.+|.++++|..|-+.+ |+|+ .+|...|.+
T Consensus        61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g  138 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG  138 (498)
T ss_pred             CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence            44445556778888999988 89999888899999999999999999999999999988887766 8887 899999999


Q ss_pred             ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcc------------cCCc
Q 043567          474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG------------HIPH  541 (911)
Q Consensus       474 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------~~p~  541 (911)
                      +.+|+.|.+.-|++.-.....|..+++|..|.+.+|.+...-...+..+..++.+.+..|.+..            ..|.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            9999999999999988888888899999999999999884444478888899999998887421            1222


Q ss_pred             CccCcCCCcEEEccCcccccccchhhccC-CCCcEEEccCcccccccCc-cc-ccccccEEEcccCcccccccccccCCC
Q 043567          542 WMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSVSENYLSGFMTT-SF-NISSVEHLYLQKNSLSGPIPIALFRSS  618 (911)
Q Consensus       542 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~ls~n~l~~~~~~-~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~  618 (911)
                      .++.........+.+.++...-+..+... ..+..--.+.+...+.-|. .| .+++|+.|+|++|++++.-+.+|.+..
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence            22222233333333333332222222111 1111111222333333333 34 788888888888888888788888888


Q ss_pred             CCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCC-cccccccccccCCc
Q 043567          619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP-SCFTNITLWSVGNL  697 (911)
Q Consensus       619 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~~~~~~~  697 (911)
                      .+++|.|..|++...-...|.++..|+.|+|.+|+|+-.-|..|..+.+|.+|.|-.|++.-.-- .+++.+-. .....
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr-~~~~~  377 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR-KKSVV  377 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh-hCCCC
Confidence            88888888888876666678888888888888888888888888888888888888887651110 01111000 00011


Q ss_pred             cccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEE-EcccCcccc
Q 043567          698 DRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL-DLSCNKLTG  776 (911)
Q Consensus       698 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-dLs~N~l~g  776 (911)
                      .+.+.....++..+++..+....                +.+....+......    .+.....+.+.+. ..|++.+. 
T Consensus       378 ~~~~Cq~p~~~~~~~~~dv~~~~----------------~~c~~~ee~~~~~s----~~cP~~c~c~~tVvRcSnk~lk-  436 (498)
T KOG4237|consen  378 GNPRCQSPGFVRQIPISDVAFGD----------------FRCGGPEELGCLTS----SPCPPPCTCLDTVVRCSNKLLK-  436 (498)
T ss_pred             CCCCCCCCchhccccchhccccc----------------cccCCccccCCCCC----CCCCCCcchhhhhHhhcccchh-
Confidence            22222222233333332222111                11100000000000    0000112233332 33444333 


Q ss_pred             cCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567          777 EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN  844 (911)
Q Consensus       777 ~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  844 (911)
                      .+|..|.  ...++|++.+|.++ .+|.+  .+++| .+|+|+|+++-.--..|++++.|.+|-+|||
T Consensus       437 ~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  437 LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            6665443  45677899999997 67776  67788 8999999988777778889999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-26  Score=234.19  Aligned_cols=399  Identities=20%  Similarity=0.238  Sum_probs=284.0

Q ss_pred             EEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccC-
Q 043567          406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD-  484 (911)
Q Consensus       406 L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~-  484 (911)
                      .+-++-.++ ++|..+   .+.-++++|..|+|+...+.+|..+++|+.|||++|+|+ .|....|.++++|..|.+.+ 
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            344455566 788876   567899999999999888899999999999999999998 78778889999998888777 


Q ss_pred             cccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccc----
Q 043567          485 NNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFE----  560 (911)
Q Consensus       485 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----  560 (911)
                      |+|+......|+++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..+..+..++.+.+..|.+.    
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            9999888889999999999999999999888889999999999999999998433348889999999999988743    


Q ss_pred             --------cccchhhccCCCCcEEEccCcccccccCccccc--ccccEEEcccCcccccccc-cccCCCCCCEEeCCCCc
Q 043567          561 --------GNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI--SSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNG  629 (911)
Q Consensus       561 --------~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~  629 (911)
                              ...|..++..+...-..+.++++....+.-|.+  .++..-..+.+...+.-|. .|..+++|++|+|++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                    222333333333333334444444444433422  2332223344444445553 68889999999999999


Q ss_pred             ccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhh
Q 043567          630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVE  709 (911)
Q Consensus       630 l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~  709 (911)
                      ++++-+.+|..+..+++|.|..|++...-...|.++..|++|+|.+|+++-..|..|..+..+...++-.+++.      
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~------  359 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN------  359 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc------
Confidence            99999999999999999999999998666778889999999999999999999999988876655544443322      


Q ss_pred             hccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc---ccCCccccC--
Q 043567          710 RLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT---GEIPSEIGE--  784 (911)
Q Consensus       710 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~---g~ip~~i~~--  784 (911)
                         ++..-.|...|+.......... .                      +....++.++++.+.+.   -.-|++.+-  
T Consensus       360 ---CnC~l~wl~~Wlr~~~~~~~~~-C----------------------q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~  413 (498)
T KOG4237|consen  360 ---CNCRLAWLGEWLRKKSVVGNPR-C----------------------QSPGFVRQIPISDVAFGDFRCGGPEELGCLT  413 (498)
T ss_pred             ---CccchHHHHHHHhhCCCCCCCC-C----------------------CCCchhccccchhccccccccCCccccCCCC
Confidence               2222223334443332111111 1                      11223444555544332   123333322  


Q ss_pred             -------CCCC-CEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          785 -------LQEI-PVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       785 -------l~~L-~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                             ++-+ ++..-|++.+. .+|..+..  .-..|++.+|.++ .+|.+  .+..| .+|+|+|+++-
T Consensus       414 s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~--d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  414 SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPV--DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             CCCCCCCcchhhhhHhhcccchh-hcCCCCCc--hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence                   3334 34555666655 67766553  4568899999999 78877  67778 89999999875

>PLN03210 Resistant to P

Probab=99.90  E-value=1.9e-22  Score=253.81  Aligned_cols=308  Identities=20%  Similarity=0.200  Sum_probs=170.6

Q ss_pred             CCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEc
Q 043567          427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL  506 (911)
Q Consensus       427 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  506 (911)
                      +|+.|.+.++.+. .+|..+ ...+|++|++.+|++. .++..+ ..+++|+.++++++.....+| .+..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence            3444444444333 233333 2344444444444443 233221 234444444444433322332 2444455555555


Q ss_pred             cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccc
Q 043567          507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGF  586 (911)
Q Consensus       507 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~  586 (911)
                      ++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..+|+.|++++|.+.. 
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-
Confidence            5554444455555555555555555544333444433 4555555555555444344422   2345555555555432 


Q ss_pred             cCcccccccccEEEcccCcc-------cccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC
Q 043567          587 MTTSFNISSVEHLYLQKNSL-------SGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP  659 (911)
Q Consensus       587 ~~~~~~~~~L~~L~Ls~n~l-------~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip  659 (911)
                      +|..+.+++|++|++.++..       ....|......++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            23333445555555544321       11112222234567777777777766777777777777777777776555677


Q ss_pred             hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccc
Q 043567          660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF  739 (911)
Q Consensus       660 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  739 (911)
                      ..+ ++++|+.|++++|.....+|..                                                      
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------------------  844 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------------------  844 (1153)
T ss_pred             CCC-CccccCEEECCCCCcccccccc------------------------------------------------------
Confidence            665 6777777777776543333321                                                      


Q ss_pred             ccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccC
Q 043567          740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH  819 (911)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  819 (911)
                                           .++++.|+|++|.++ .+|..++.+++|+.|+|++|+--..+|..+..+++|+.+++++
T Consensus       845 ---------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        845 ---------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             ---------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence                                 125667888888887 7888888888999999988443345787888888888888888


Q ss_pred             Cc
Q 043567          820 NR  821 (911)
Q Consensus       820 N~  821 (911)
                      |.
T Consensus       903 C~  904 (1153)
T PLN03210        903 CG  904 (1153)
T ss_pred             Cc
Confidence            74

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=2.8e-22  Score=252.23  Aligned_cols=341  Identities=19%  Similarity=0.218  Sum_probs=258.6

Q ss_pred             ChhHHHhccCCcEEEcccCc------cccccchhhhcCC-CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccc
Q 043567          418 PQDMGIILQKLLYMDMSNNH------FEGNIASSIAEMK-ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR  490 (911)
Q Consensus       418 p~~~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~  490 (911)
                      ....+..+++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+  ...+|+.|++.+|.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            34444558888888886653      2334666666654 6899999888886 777764  5678889999888876 4


Q ss_pred             cCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccC
Q 043567          491 IFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH  570 (911)
Q Consensus       491 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~  570 (911)
                      ++..+..+++|+.|+|+++...+.+|. +..+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            566677888899999988765556664 7778889999998887767888888888999999998886666777765 68


Q ss_pred             CCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccc-------ccCchhhhcCCC
Q 043567          571 RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS-------GVIPHQINECSN  643 (911)
Q Consensus       571 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~-------~~~p~~l~~l~~  643 (911)
                      ++|+.|++++|...+.+|..  ..+|+.|++++|.+. .+|..+ .+++|+.|++.++...       ...|......++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            88889999888766555543  457888888888876 567655 5678888888774321       111222334568


Q ss_pred             ccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccc
Q 043567          644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM  723 (911)
Q Consensus       644 L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~  723 (911)
                      |+.|++++|...+.+|.+++++++|+.|++++|+..+.+|..+                                     
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------  822 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------  822 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence            8899999988888889888899999999998886555555432                                     


Q ss_pred             cccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccc
Q 043567          724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIP  803 (911)
Q Consensus       724 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip  803 (911)
                                                          .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|
T Consensus       823 ------------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP  862 (1153)
T PLN03210        823 ------------------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVP  862 (1153)
T ss_pred             ------------------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cCh
Confidence                                                1346788999998766677754   468999999999998 789


Q ss_pred             ccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCc
Q 043567          804 ESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNN  845 (911)
Q Consensus       804 ~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  845 (911)
                      .+++.+++|+.|++++|+--..+|..+..++.|+.++++++.
T Consensus       863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999999999999999854434688889999999999999874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=9e-22  Score=229.13  Aligned_cols=264  Identities=23%  Similarity=0.261  Sum_probs=153.2

Q ss_pred             CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEE
Q 043567          450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR  529 (911)
Q Consensus       450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  529 (911)
                      ..-..|+++.|.++ .+|..+.   ++|+.|++.+|+++.                         +|.   .+++|++|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-------------------------LP~---lp~~Lk~Ld  248 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-------------------------LPA---LPPELRTLE  248 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-------------------------CCC---CCCCCcEEE
Confidence            34556677777666 5665432   245555555555443                         222   124445555


Q ss_pred             CcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccc
Q 043567          530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP  609 (911)
Q Consensus       530 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~  609 (911)
                      +++|+++ .+|..   .++|+.|++++|.++ .+|...   .+|+.|++++|+++..+.   ..++|+.|++++|++++ 
T Consensus       249 Ls~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        249 VSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-  316 (788)
T ss_pred             ecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECcCCccccccc---cccccceeECCCCcccc-
Confidence            5555444 23321   234455555555544 233211   334455555555543321   13456666666666653 


Q ss_pred             ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567          610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI  689 (911)
Q Consensus       610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l  689 (911)
                      +|...   .+|+.|++++|++++ +|..   ..+|++|+|++|+++ .+|..   ..+|+.|++++|++++ +|...   
T Consensus       317 Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l~---  381 (788)
T PRK15387        317 LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPALP---  381 (788)
T ss_pred             CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccccc---
Confidence            33321   346666777777763 4532   136777777777777 34532   2456667777777662 44211   


Q ss_pred             cccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEc
Q 043567          690 TLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL  769 (911)
Q Consensus       690 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  769 (911)
                                                                                              ..|..|++
T Consensus       382 ------------------------------------------------------------------------~~L~~LdL  389 (788)
T PRK15387        382 ------------------------------------------------------------------------SGLKELIV  389 (788)
T ss_pred             ------------------------------------------------------------------------cccceEEe
Confidence                                                                                    13566888


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567          770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       770 s~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  849 (911)
                      ++|+|+ .+|..   .++|+.|++++|++++ +|...   .+|+.|++++|+|+ .+|..+.+++.|++++|++|+|+|.
T Consensus       390 s~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        390 SGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             cCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            888887 46653   3568888888888874 67543   35678888888887 6888888888888888888888888


Q ss_pred             CCCC
Q 043567          850 IPDK  853 (911)
Q Consensus       850 iP~~  853 (911)
                      +|+.
T Consensus       461 ~~~~  464 (788)
T PRK15387        461 TLQA  464 (788)
T ss_pred             HHHH
Confidence            7753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=1.2e-21  Score=228.13  Aligned_cols=268  Identities=24%  Similarity=0.287  Sum_probs=169.5

Q ss_pred             cCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEE
Q 043567          426 QKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY  505 (911)
Q Consensus       426 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  505 (911)
                      ..-..|+++++.++ .+|..+.  ++|+.|++++|+++ .+|.    ..++|+.|++++|+++.. |..   .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceee
Confidence            34678999999998 6777765  48999999999998 5764    245666666666666532 321   24556666


Q ss_pred             ccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccc
Q 043567          506 LENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG  585 (911)
Q Consensus       506 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~  585 (911)
                      +++|.++ .+|..   .++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..                   
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l-------------------  320 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL-------------------  320 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC-------------------
Confidence            6666655 23321   234555555555555 23321   2345555555555442 2221                   


Q ss_pred             ccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcC
Q 043567          586 FMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL  665 (911)
Q Consensus       586 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l  665 (911)
                             ...|+.|++++|++++ +|..   ..+|+.|+|++|+++ .+|..   ..+|+.|++++|+++ .+|..   .
T Consensus       321 -------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~  381 (788)
T PRK15387        321 -------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---P  381 (788)
T ss_pred             -------cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---c
Confidence                   1235555666666652 4431   136777777777777 34543   246777778888777 46643   3


Q ss_pred             CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567          666 TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV  745 (911)
Q Consensus       666 ~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  745 (911)
                      .+|+.|++++|++++ +|...                                                           
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l~-----------------------------------------------------------  401 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVLP-----------------------------------------------------------  401 (788)
T ss_pred             cccceEEecCCcccC-CCCcc-----------------------------------------------------------
Confidence            467788888888763 44211                                                           


Q ss_pred             eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567          746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ  825 (911)
Q Consensus       746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~  825 (911)
                                      +.|+.||+|+|+++ .+|..   ..+|+.|++++|+|+ .+|..++++++|+.|||++|+|+|.
T Consensus       402 ----------------s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        402 ----------------SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ----------------cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence                            14566888888887 46754   345777888888887 6788888888888888888888888


Q ss_pred             CCCCCCCC
Q 043567          826 IPPKLTEL  833 (911)
Q Consensus       826 ip~~l~~l  833 (911)
                      +|..+..+
T Consensus       461 ~~~~L~~l  468 (788)
T PRK15387        461 TLQALREI  468 (788)
T ss_pred             HHHHHHHH
Confidence            77766443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1e-19  Score=213.73  Aligned_cols=78  Identities=29%  Similarity=0.452  Sum_probs=42.7

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCC----CCCCCCCe
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL----TELNFLSN  838 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l----~~l~~L~~  838 (911)
                      +|+.|++++|+|+ .+|..+.  +.|+.|+|++|+|+ .+|..+..  .|+.||+++|+|+ .+|..+    ..++.+.+
T Consensus       347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~  419 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA--ALQIMQASRNNLV-RLPESLPHFRGEGPQPTR  419 (754)
T ss_pred             cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH--HHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence            3455666666665 4554442  45666666666665 34544432  4666666666665 344433    23355566


Q ss_pred             EeccCCcCe
Q 043567          839 FNVSYNNLS  847 (911)
Q Consensus       839 L~ls~N~l~  847 (911)
                      +++.+|+++
T Consensus       420 L~L~~Npls  428 (754)
T PRK15370        420 IIVEYNPFS  428 (754)
T ss_pred             EEeeCCCcc
Confidence            666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.5e-19  Score=212.45  Aligned_cols=21  Identities=10%  Similarity=-0.080  Sum_probs=15.1

Q ss_pred             CCCCChHHHHHHHHHhhhcCC
Q 043567           33 GYKACLKTERAALSEIKSFFI   53 (911)
Q Consensus        33 ~~~~c~~~~~~all~~k~~~~   53 (911)
                      ...+-..+|.+.+++..+.+.
T Consensus        56 ~~~~~~~~~~~~~~~~~~~l~   76 (754)
T PRK15370         56 PPETASPEEIKSKFECLRMLA   76 (754)
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            344455678888988888884

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.1e-19  Score=196.85  Aligned_cols=181  Identities=23%  Similarity=0.203  Sum_probs=87.5

Q ss_pred             eeeccCcccccc-cCCCCCCCCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCcc------cCCcCccCcC
Q 043567          479 WLGLSDNNFYGR-IFPGYMNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSG------HIPHWMGNLS  547 (911)
Q Consensus       479 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~  547 (911)
                      .|+|..+.+.+. ....+..+.+|+.++++++.++..    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            355555655522 223334455566666666666432    33344455556666666655541      1122333344


Q ss_pred             CCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccc----cccccccCC-CCCCE
Q 043567          548 YLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG----PIPIALFRS-SNLLT  622 (911)
Q Consensus       548 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~~-~~L~~  622 (911)
                      +|+.|++++|.+.+..+..+..+.+                   . ++|++|++++|++++    .+...+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence            4444444444444333333322222                   1 225555555555442    122333444 56666


Q ss_pred             EeCCCCccccc----CchhhhcCCCccEEEccCCccccc----CChhhhcCCCCCeEEcCCCcCC
Q 043567          623 LDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQ----IPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       623 L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      |++++|.+++.    ++..+..++.|++|++++|.+++.    ++..+...++|+.|++++|.++
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            66666666532    233444555666666666666532    2333444456666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3.1e-18  Score=187.68  Aligned_cols=252  Identities=24%  Similarity=0.244  Sum_probs=124.7

Q ss_pred             ccCCcEEEcccCccccc----cchhhhcCCCCcEEeccCcccCCccc------HHHHhcccccceeeccCcccccccCCC
Q 043567          425 LQKLLYMDMSNNHFEGN----IASSIAEMKELRFLDLSKNNFSGELS------AALLTSCFSLLWLGLSDNNFYGRIFPG  494 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~g~i~------~~~~~~~~~L~~L~L~~n~l~~~~~~~  494 (911)
                      +.+|++++++++.++..    ++..+...+++++++++.+.+.+ .+      ...+..+++|+.|++++|.+.+..+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            44455555555554321    33334444455555555554431 01      111223445555555555444333322


Q ss_pred             CCCCC---CCCEEEccCccccc----cccccccCC-CCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccccc
Q 043567          495 YMNLT---QLQYLYLENNKFSG----KIEEGLLKS-KKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFEGN  562 (911)
Q Consensus       495 ~~~l~---~L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~  562 (911)
                      +..+.   +|++|++++|++++    .+...+..+ ++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            22222   36666666665552    122233344 5666666666666532    223344455666666666666532


Q ss_pred             ----cchhhccCCCCcEEEccCcccccccCc----cc-ccccccEEEcccCcccccccccccC-----CCCCCEEeCCCC
Q 043567          563 ----IPVQLLNHRRLQLFSVSENYLSGFMTT----SF-NISSVEHLYLQKNSLSGPIPIALFR-----SSNLLTLDLRDN  628 (911)
Q Consensus       563 ----~p~~l~~~~~L~~L~ls~n~l~~~~~~----~~-~~~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~Ls~N  628 (911)
                          ++..+..+++|+.|++++|.+.+....    .+ .+++|++|++++|.+++.....+..     .+.|+.|++++|
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence                233344445666666666665533221    12 3556666666666665422222211     256777777777


Q ss_pred             ccc----ccCchhhhcCCCccEEEccCCccccc----CChhhhcC-CCCCeEEcCCCc
Q 043567          629 GFS----GVIPHQINECSNLRFLLLRGNNLEGQ----IPNQICQL-TGLGMMDLSHNK  677 (911)
Q Consensus       629 ~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~  677 (911)
                      .++    ..+...+..+++|+++++++|.++..    +...+... +.|+.+++.+|+
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            665    12334455556677777777777643    33333333 566666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1e-18  Score=158.50  Aligned_cols=187  Identities=27%  Similarity=0.488  Sum_probs=160.3

Q ss_pred             cCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCC
Q 043567          587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLT  666 (911)
Q Consensus       587 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~  666 (911)
                      +|..|+++..++|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|..|+.++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            455567888899999999998 78889999999999999999998 78999999999999999999998 8999999999


Q ss_pred             CCCeEEcCCCcCCC-CCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567          667 GLGMMDLSHNKFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV  745 (911)
Q Consensus       667 ~L~~L~Ls~N~l~g-~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  745 (911)
                      .|++|||.+|+++. .+|..|.-                                                         
T Consensus       103 ~levldltynnl~e~~lpgnff~---------------------------------------------------------  125 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFY---------------------------------------------------------  125 (264)
T ss_pred             hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence            99999999999873 23433322                                                         


Q ss_pred             eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567          746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ  825 (911)
Q Consensus       746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~  825 (911)
                                     ++.|..|+|+.|.|. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|.+.+|+++ .
T Consensus       126 ---------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  126 ---------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ---------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence                           234566889999998 89999999999999999999997 79999999999999999999999 7


Q ss_pred             CCCCCCCCCCC---CeEeccCCcCeecCC
Q 043567          826 IPPKLTELNFL---SNFNVSYNNLSGLIP  851 (911)
Q Consensus       826 ip~~l~~l~~L---~~L~ls~N~l~g~iP  851 (911)
                      +|++++++.-+   +++.+.+|++--+|-
T Consensus       188 lppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  188 LPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             cChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            88888877643   456677888876664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.4e-18  Score=156.12  Aligned_cols=182  Identities=25%  Similarity=0.437  Sum_probs=139.7

Q ss_pred             CCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCc
Q 043567          495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ  574 (911)
Q Consensus       495 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~  574 (911)
                      +.++...+.|.|++|+++ .+|..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445677888888999988 67778888899999999999988 77888899999999999988887 7889999999999


Q ss_pred             EEEccCccccc-ccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCC
Q 043567          575 LFSVSENYLSG-FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN  652 (911)
Q Consensus       575 ~L~ls~n~l~~-~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  652 (911)
                      +||+.+|++.. ..|..| .+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            99999888874 345544 7777777888888776 67777788888888888887777 67777888888888888888


Q ss_pred             cccccCChhhhcCCCC---CeEEcCCCcCCCCC
Q 043567          653 NLEGQIPNQICQLTGL---GMMDLSHNKFNGSI  682 (911)
Q Consensus       653 ~l~~~ip~~l~~l~~L---~~L~Ls~N~l~g~i  682 (911)
                      +++ .+|.+++++.-+   +++.+.+|++...|
T Consensus       184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             eee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            877 666666655322   34455555554333

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=5.3e-14  Score=165.51  Aligned_cols=118  Identities=33%  Similarity=0.570  Sum_probs=106.3

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      .++.|+|++|.++|.+|..|+.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+++++.|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCeecCCCC--CCCCccCccccCCCCCCCCCccCCCCC
Q 043567          843 YNNLSGLIPDK--GQFATFDESSYRGNLHLCGPTINKSCN  880 (911)
Q Consensus       843 ~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg~~l~~~c~  880 (911)
                      +|+++|.+|..  ..+.......+.||+++||.|..+.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999975  222333456689999999987656674

>PLN03150 hypothetical protein; Provisional

Probab=99.44  E-value=5.6e-13  Score=156.93  Aligned_cols=155  Identities=26%  Similarity=0.396  Sum_probs=98.8

Q ss_pred             CCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCC----ccccceeecCCCCcEEEEecCCCCcccccccc
Q 043567           35 KACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDC----CNWKGVRCNATTGRVIQLLLNDTSKFIEYSKN  110 (911)
Q Consensus        35 ~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~----C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~  110 (911)
                      ..+.++|.+||+++|+++.      ++.  ..+|..     ..|    |.|.||.|......                  
T Consensus       367 ~~t~~~~~~aL~~~k~~~~------~~~--~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~------------------  415 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLG------LPL--RFGWNG-----DPCVPQQHPWSGADCQFDSTK------------------  415 (623)
T ss_pred             cccCchHHHHHHHHHHhcC------Ccc--cCCCCC-----CCCCCcccccccceeeccCCC------------------
Confidence            3466789999999999983      232  247963     244    37999999531100                  


Q ss_pred             cccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCC
Q 043567          111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE  190 (911)
Q Consensus       111 ~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  190 (911)
                         +             ...++.|+|++|.+.|.++    ..++.+++|++|+|++|.+.+.+|..++.+++|++|+|++
T Consensus       416 ---~-------------~~~v~~L~L~~n~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~  475 (623)
T PLN03150        416 ---G-------------KWFIDGLGLDNQGLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY  475 (623)
T ss_pred             ---C-------------ceEEEEEECCCCCccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence               0             0123455666666666666    5667777777777777777777777777777777777777


Q ss_pred             cccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccC-CCCCCEEeccCCc
Q 043567          191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICE-LKNLFVLNLEKNN  242 (911)
Q Consensus       191 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~-l~~L~~L~Ls~n~  242 (911)
                      |+++|.+| ..++++++|++|+|++|.++|.+|.. +.. ..++..+++.+|.
T Consensus       476 N~lsg~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        476 NSFNGSIP-ESLGQLTSLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCCCc-hHHhcCCCCCEEECcCCcccccCChH-HhhccccCceEEecCCc
Confidence            77776666 45666666666666666666666654 332 2344555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=6.9e-15  Score=157.71  Aligned_cols=176  Identities=29%  Similarity=0.471  Sum_probs=144.4

Q ss_pred             cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567          593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD  672 (911)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~  672 (911)
                      +.--...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|.+|||+.|+++ .+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344456778888887 78888888888888888888887 78888888999999999999988 7888888875 88888


Q ss_pred             cCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccc
Q 043567          673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR  752 (911)
Q Consensus       673 Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  752 (911)
                      +++|+++ .+|..++.                                                                
T Consensus       150 ~sNNkl~-~lp~~ig~----------------------------------------------------------------  164 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGL----------------------------------------------------------------  164 (722)
T ss_pred             EecCccc-cCCccccc----------------------------------------------------------------
Confidence            8888886 56665542                                                                


Q ss_pred             eeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCC
Q 043567          753 YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE  832 (911)
Q Consensus       753 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~  832 (911)
                              ...|..||.|.|++. .+|..++++.+|+.|++.+|++. ..|+.+..|+ |..||+|+|+++ .||..|.+
T Consensus       165 --------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~  232 (722)
T KOG0532|consen  165 --------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRK  232 (722)
T ss_pred             --------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhh
Confidence                    125666888999888 78888999999999999999987 6777788775 888999999998 78999999


Q ss_pred             CCCCCeEeccCCcCeec
Q 043567          833 LNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       833 l~~L~~L~ls~N~l~g~  849 (911)
                      |+.|++|-|.+|+|..+
T Consensus       233 m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  233 MRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhheeeeeccCCCCCC
Confidence            99999999999999865

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=1.1e-13  Score=148.50  Aligned_cols=194  Identities=25%  Similarity=0.424  Sum_probs=140.3

Q ss_pred             CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcc
Q 043567          523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQ  602 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls  602 (911)
                      ..-...|++.|++. .+|..+..+..|+.+.+++|.+. .+|..++++..|++++++.|+++                  
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS------------------  134 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS------------------  134 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh------------------
Confidence            34456677777777 67777777777777777777776 66777776666666666665554                  


Q ss_pred             cCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCC
Q 043567          603 KNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSI  682 (911)
Q Consensus       603 ~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~i  682 (911)
                            .+|..++.++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+
T Consensus       135 ------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l  204 (722)
T KOG0532|consen  135 ------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL  204 (722)
T ss_pred             ------cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence                  4455555555 777888888877 67888887788888888888887 67888888888888888888876 45


Q ss_pred             CcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCc
Q 043567          683 PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD  762 (911)
Q Consensus       683 p~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  762 (911)
                      |..+..|                                                                         
T Consensus       205 p~El~~L-------------------------------------------------------------------------  211 (722)
T KOG0532|consen  205 PEELCSL-------------------------------------------------------------------------  211 (722)
T ss_pred             CHHHhCC-------------------------------------------------------------------------
Confidence            5544433                                                                         


Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccc---cCCCCEEeccCCc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN---LKMIESLDLSHNR  821 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~---l~~L~~LdLs~N~  821 (911)
                      .|..||+|+|+++ .||-+|.+|+.|++|-|.+|.++ ..|..+.-   ..=-++|+..-++
T Consensus       212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            2566999999998 89999999999999999999997 55655542   2334566666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=5.7e-12  Score=142.13  Aligned_cols=123  Identities=28%  Similarity=0.375  Sum_probs=59.1

Q ss_pred             EEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccc-cccEEEcccCcccccccccccCCCCCCEEeCCCCc
Q 043567          551 VLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNIS-SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNG  629 (911)
Q Consensus       551 ~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~  629 (911)
                      .+++..|.+... +..+...+.++.+++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            455555555322 2223334555555555555555444433332 5555555555554 333444555555555555555


Q ss_pred             ccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567          630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK  677 (911)
Q Consensus       630 l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~  677 (911)
                      ++ .+|...+..+.|+.|++++|+++ .+|..+..+..|+++++++|+
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            55 33443334455555555555554 444444344445555555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=3.3e-11  Score=135.97  Aligned_cols=102  Identities=28%  Similarity=0.424  Sum_probs=68.1

Q ss_pred             EEEccCcccccccCcccccccccEEEcccCcccccccccccCCC-CCCEEeCCCCcccccCchhhhcCCCccEEEccCCc
Q 043567          575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSS-NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN  653 (911)
Q Consensus       575 ~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  653 (911)
                      .++...|.+...+......+.++.+++.+|.++ .+|....... +|+.|++++|++. .+|..++.+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            466666666544444445566777777777776 5555555553 7777777777776 555667777777777777777


Q ss_pred             ccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          654 LEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       654 l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      ++ .+|...+.++.|+.|++++|+++
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc
Confidence            76 56655556777777777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=7.5e-11  Score=123.59  Aligned_cols=233  Identities=23%  Similarity=0.207  Sum_probs=124.3

Q ss_pred             EeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccch-hhhcCCCCCCEEEcCCcccCCccC-hhhhcCCCCCCEE
Q 043567          134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIF-LYLNALTSLTTLILRENNIQGSRT-KQGLSKLKNLEAL  211 (911)
Q Consensus       134 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L  211 (911)
                      +.+++-.+....-+++...-.++++|+...|.+..+..... .....|++++.||||+|-+..-.+ ......+++|+.|
T Consensus        98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L  177 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL  177 (505)
T ss_pred             hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence            44444444444333333445567777777777776653221 345567777777777776653222 1334567777777


Q ss_pred             eCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567          212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN  290 (911)
Q Consensus       212 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  290 (911)
                      +|+.|++.-......-..++.|+.|.|+.|.++.. +-..+..+++|+.|+|..|.....-......+..|+.|||++|+
T Consensus       178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            77777765333322223455666666666666532 11223345566666666664222222233344555566666555


Q ss_pred             CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCC--Chh-----hhccCCCCEEECCCCC
Q 043567          291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI--PPF-----LLHQFDLKYLDLSHND  363 (911)
Q Consensus       291 l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~-----l~~~~~L~~L~Ls~n~  363 (911)
                      +.                         ..........++.|+.|+++.+.+.++  |+.     ...+++|++|++..|+
T Consensus       258 li-------------------------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  258 LI-------------------------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cc-------------------------ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            54                         332223333444455555555555332  222     3456678888888888


Q ss_pred             CCCCCch-hhhhcCCcccEEEccCCccccc
Q 043567          364 LDGAFPT-WALQNNTKLEVLLLTNNSFTGN  392 (911)
Q Consensus       364 l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~  392 (911)
                      +. ..+. .-...+++|+.|.+..|.+...
T Consensus       313 I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  313 IR-DWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cc-cccccchhhccchhhhhhccccccccc
Confidence            74 2221 1122456677777777777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=7.9e-11  Score=120.28  Aligned_cols=243  Identities=23%  Similarity=0.261  Sum_probs=121.8

Q ss_pred             ccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCC---CCccchh-------hhcCCCCCCEEEcCCcccC
Q 043567          125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY---FDDSIFL-------YLNALTSLTTLILRENNIQ  194 (911)
Q Consensus       125 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~Ls~n~l~  194 (911)
                      ..++..++.++||+|.|...-...+...+.+.+.|+..++|.-.   ....+|.       .+..+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            45566777777777777554333333556666777777776532   1222332       3345567777777777664


Q ss_pred             CccC---hhhhcCCCCCCEEeCCCCCCCCccCcc-------------cccCCCCCCEEeccCCcCCCC----CCcccCCC
Q 043567          195 GSRT---KQGLSKLKNLEALDLSSNFINGSLESQ-------------GICELKNLFVLNLEKNNIEDH----LPNCLNNM  254 (911)
Q Consensus       195 ~~~~---~~~l~~l~~L~~L~Ls~n~l~~~i~~~-------------~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l  254 (911)
                      -..+   .+.+..+..|++|.|.+|.+. .....             ..+.-+.|+++...+|++...    +...|...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            2222   123455666777777766654 21111             123334555555555555432    11223344


Q ss_pred             CCCcEEEccCCcCCcc----CcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCC
Q 043567          255 TRLKVLDISFNQLSGS----FPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQ  330 (911)
Q Consensus       255 ~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  330 (911)
                      +.|+.+.++.|.+...    +...+..+++|++|||.+|.++-.-.                      ......+...++
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----------------------~~LakaL~s~~~  242 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----------------------VALAKALSSWPH  242 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----------------------HHHHHHhcccch
Confidence            5555555555554321    12234445555555555555431110                      001112333445


Q ss_pred             ceEEECCCCCCCC-----CChhh-hccCCCCEEECCCCCCCCC---CchhhhhcCCcccEEEccCCccc
Q 043567          331 LKVLRLPNCSLNV-----IPPFL-LHQFDLKYLDLSHNDLDGA---FPTWALQNNTKLEVLLLTNNSFT  390 (911)
Q Consensus       331 L~~L~L~~n~l~~-----ip~~l-~~~~~L~~L~Ls~n~l~~~---~p~~~~~~l~~L~~L~L~~n~l~  390 (911)
                      |+++++.+|.+..     +-..+ ...++|+.|.+.+|.++..   .........+.|+.|+|++|++.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            5566666665521     11111 1245677777777776522   11112224667777777777773

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.3e-10  Score=121.89  Aligned_cols=217  Identities=21%  Similarity=0.188  Sum_probs=150.6

Q ss_pred             cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCc--cchhhhcCCCCCCEEEcCCcccCCccChhhhc
Q 043567          126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD--SIFLYLNALTSLTTLILRENNIQGSRTKQGLS  203 (911)
Q Consensus       126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~  203 (911)
                      +.+++|+...|.++.+......   .....|++++.||||+|-|..  .+-.....+++|+.|+|+.|++.-......-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            3578899999999887654322   356789999999999998864  34455678999999999999986443333334


Q ss_pred             CCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccC-cccccCCCCCC
Q 043567          204 KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSF-PSIISNLTSLE  282 (911)
Q Consensus       204 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~  282 (911)
                      .+++|+.|.|+.|.++-.--......+|+|+.|+|..|...........-++.|+.|||++|++.... -...+.++.|+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            67899999999999982211223567899999999999643333344556788999999999977321 24578899999


Q ss_pred             eeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCC--hhhhccCCCCEEECC
Q 043567          283 YLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP--PFLLHQFDLKYLDLS  360 (911)
Q Consensus       283 ~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls  360 (911)
                      .|+++.+.+.. +.....   ..+                +....+++|+.|++..|++...+  ..+..+.+|+.|.+.
T Consensus       275 ~Lnls~tgi~s-i~~~d~---~s~----------------~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  275 QLNLSSTGIAS-IAEPDV---ESL----------------DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             hhhccccCcch-hcCCCc---cch----------------hhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            99999988762 210000   000                01223456677777777774443  355666677777777


Q ss_pred             CCCCC
Q 043567          361 HNDLD  365 (911)
Q Consensus       361 ~n~l~  365 (911)
                      .|.++
T Consensus       335 ~n~ln  339 (505)
T KOG3207|consen  335 LNYLN  339 (505)
T ss_pred             ccccc
Confidence            77775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=4.3e-10  Score=108.37  Aligned_cols=127  Identities=32%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             CCCCCcEEeCCCCCCCccchhhhc-CCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCC
Q 043567          155 SLKRLKILNLGYNYFDDSIFLYLN-ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL  233 (911)
Q Consensus       155 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L  233 (911)
                      +..++++|+|++|.|+..  ..++ .+.+|+.|+|++|.|+ .+.  .+..+++|++|++++|+|+ .+.......+++|
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            333445555555554421  1232 3455555555555554 222  3555666666666666665 3432212346666


Q ss_pred             CEEeccCCcCCCCC-CcccCCCCCCcEEEccCCcCCccC---cccccCCCCCCeeecc
Q 043567          234 FVLNLEKNNIEDHL-PNCLNNMTRLKVLDISFNQLSGSF---PSIISNLTSLEYLALF  287 (911)
Q Consensus       234 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~L~  287 (911)
                      ++|++++|+|.... -..+..+++|+.|++.+|.++..-   ...+..+++|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            66666666665421 133556667777777777665321   1134567777777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.8e-10  Score=114.48  Aligned_cols=87  Identities=25%  Similarity=0.271  Sum_probs=63.7

Q ss_pred             ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc-CCCCCCCCCCCCeEe
Q 043567          762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ-IPPKLTELNFLSNFN  840 (911)
Q Consensus       762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~  840 (911)
                      ++|+.||||+|.++ .+-.+=..|-+.+.|+|+.|.+.  --+.+++|-+|+.||++.|+|... --..+++|+.|+.+.
T Consensus       329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            46677888888777 44444455667788888888874  234577788888999999988632 124678899999999


Q ss_pred             ccCCcCeecCC
Q 043567          841 VSYNNLSGLIP  851 (911)
Q Consensus       841 ls~N~l~g~iP  851 (911)
                      |-+|++.+.+-
T Consensus       406 L~~NPl~~~vd  416 (490)
T KOG1259|consen  406 LTGNPLAGSVD  416 (490)
T ss_pred             hcCCCccccch
Confidence            99999988653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=9.6e-10  Score=105.98  Aligned_cols=126  Identities=34%  Similarity=0.365  Sum_probs=38.8

Q ss_pred             cCCCCCCEEEcCCcccCCccChhhhc-CCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCccc-CCCC
Q 043567          178 NALTSLTTLILRENNIQGSRTKQGLS-KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCL-NNMT  255 (911)
Q Consensus       178 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~  255 (911)
                      .+..++++|+|++|.|+ .+.  .++ .+.+|+.||+++|.|+ .++  .+..+++|++|++++|.++.. .+.+ ..++
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            34456777777777775 222  344 4667777777777776 444  266677777777777777763 3233 3467


Q ss_pred             CCcEEEccCCcCCccC-cccccCCCCCCeeeccCCcCCCccC--hhhhcccccccEEE
Q 043567          256 RLKVLDISFNQLSGSF-PSIISNLTSLEYLALFDNNFEGTFP--LSSLANHSKLEVLL  310 (911)
Q Consensus       256 ~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p--~~~l~~l~~L~~L~  310 (911)
                      +|+.|++++|++...- -..++.+++|++|++.+|.++..--  ...+..+|+|+.||
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            7777777777765421 2345566777777777776653211  12344555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.87  E-value=5e-10  Score=114.52  Aligned_cols=135  Identities=23%  Similarity=0.287  Sum_probs=71.0

Q ss_pred             CCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccccc----cch
Q 043567          498 LTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFEGN----IPV  565 (911)
Q Consensus       498 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~  565 (911)
                      -+.|+.+..++|++...    +...|...+.|+.+.++.|.|...    +...+.++++|+.|||.+|.|+..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            34566666666655422    122334445555565555554311    112344455555555555544422    112


Q ss_pred             hhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccccccccc-----CCCCCCEEeCCCCcccc----cCch
Q 043567          566 QLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF-----RSSNLLTLDLRDNGFSG----VIPH  636 (911)
Q Consensus       566 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-----~~~~L~~L~Ls~N~l~~----~~p~  636 (911)
                      .+.                       .+++|+.|++++|.+...-...+.     ..+.|++|.+.+|.++.    .+..
T Consensus       236 aL~-----------------------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  236 ALS-----------------------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             Hhc-----------------------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            222                       344566666666665543322221     24678888888887763    2233


Q ss_pred             hhhcCCCccEEEccCCccc
Q 043567          637 QINECSNLRFLLLRGNNLE  655 (911)
Q Consensus       637 ~l~~l~~L~~L~L~~N~l~  655 (911)
                      .+...+.|+.|+|++|++.
T Consensus       293 ~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHhcchhhHHhcCCccccc
Confidence            4556788888888888883

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.84  E-value=3.2e-09  Score=76.72  Aligned_cols=42  Identities=33%  Similarity=0.670  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeec
Q 043567           39 KTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCN   87 (911)
Q Consensus        39 ~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~   87 (911)
                      ++|++||++||+++..     +|.+.+.+|....  ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~-----~~~~~l~~W~~~~--~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNN-----DPSGVLSSWNPSS--DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT------SC-CCCTT--TT----S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhccc-----ccCcccccCCCcC--CCCCeeeccEEeC
Confidence            6899999999999952     4567899998751  2699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=1e-09  Score=109.24  Aligned_cols=134  Identities=22%  Similarity=0.212  Sum_probs=93.6

Q ss_pred             ccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCE
Q 043567          543 MGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLT  622 (911)
Q Consensus       543 l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~  622 (911)
                      +.....|+.+||++|.++ .+.++..-.|.++.|++|+|.+...-. ...+++|+.|||++|.++ .+-.+-..+-++++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            334456777777777776 666666667777777777777765433 225677888888888776 33334445667888


Q ss_pred             EeCCCCcccccCchhhhcCCCccEEEccCCccccc-CChhhhcCCCCCeEEcCCCcCCCC
Q 043567          623 LDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ-IPNQICQLTGLGMMDLSHNKFNGS  681 (911)
Q Consensus       623 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~g~  681 (911)
                      |.|++|.+...  .+++++-+|..||+++|+|... --..+++++-|+.+.|.+|++.+.
T Consensus       357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            88888887632  5677788888888888888632 234577888888888888888753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=8.5e-09  Score=81.58  Aligned_cols=59  Identities=41%  Similarity=0.563  Sum_probs=29.9

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR  821 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  821 (911)
                      +|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555553333444555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=9.8e-09  Score=81.25  Aligned_cols=61  Identities=41%  Similarity=0.588  Sum_probs=57.1

Q ss_pred             CCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcC
Q 043567          786 QEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNL  846 (911)
Q Consensus       786 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  846 (911)
                      ++|++|++++|+++...+..|.++++|++||+++|+++...|..|..++.|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999977778999999999999999999988889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=1.5e-08  Score=122.02  Aligned_cols=202  Identities=26%  Similarity=0.286  Sum_probs=115.0

Q ss_pred             CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCccc-CCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCE
Q 043567          157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI-QGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV  235 (911)
Q Consensus       157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  235 (911)
                      ...+...+-+|.+... +.. ..++.|++|-+..|.. ...++...|..++.|++|||++|.=-+.+|.. ++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhc
Confidence            4455555555554311 111 1234677777777651 12455556777788888888776655567764 777888888


Q ss_pred             EeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCC-CccChhhhcccccccEEEecCC
Q 043567          236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE-GTFPLSSLANHSKLEVLLLSTR  314 (911)
Q Consensus       236 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~l~~l~~L~~L~L~~~  314 (911)
                      |+++++.+.. +|..+++++.|.+|++..+.-...+|.....+++|++|.+...... +..-...+.++.+|+.+.....
T Consensus       600 L~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  600 LDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccccCCCccc-cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            8888877774 6777888888888888777655455666666788888877655421 1222234445555555544321


Q ss_pred             CccccccccCcCCCCCc----eEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567          315 NNMLQVQTENFLPTFQL----KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD  365 (911)
Q Consensus       315 ~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~  365 (911)
                      ..   .....+..+..|    +.+.+.++.....+..+..+.+|+.|.+.++.+.
T Consensus       679 s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  679 SV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            11   000111222222    2333333444555566666667777777776664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2e-09  Score=121.56  Aligned_cols=216  Identities=34%  Similarity=0.353  Sum_probs=99.8

Q ss_pred             CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEE
Q 043567          157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL  236 (911)
Q Consensus       157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  236 (911)
                      ..++.++++.|.+.. +-..+..+++|+.|++..|+|.....  .+..+++|++|++++|.|+ .+..  +..++.|+.|
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc--chhhhhcchheeccccccc-cccc--hhhccchhhh
Confidence            333344444444432 22224444555555555555442111  1444555555555555554 2221  4444455555


Q ss_pred             eccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCc-ccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567          237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN  315 (911)
Q Consensus       237 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~  315 (911)
                      ++++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-   .+..+..+..+++..+.
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc---chHHHHHHHHhhccccc
Confidence            5555555542  233445555555555555553322 1 345555666666666554211   12222222222222211


Q ss_pred             ccccccccCcCCCC--CceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccc
Q 043567          316 NMLQVQTENFLPTF--QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT  390 (911)
Q Consensus       316 ~~~~~~~~~~~~~~--~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  390 (911)
                      . ..+.  ......  +|+.+++++|.+..++..+..+..+..|++.+|.+...-.   ....+.+..+....+.+.
T Consensus       220 i-~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  220 I-SKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             c-eecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhc
Confidence            1 1110  011111  3677777777777766666667777777777777652211   123344444555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=4.5e-09  Score=118.69  Aligned_cols=247  Identities=26%  Similarity=0.248  Sum_probs=148.1

Q ss_pred             ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      +..++.+++..|.+.. +-..+..+++|+.|++.+|++.+ +... ...+++|++|++++|.|+...  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence            3444555555555542 22234555666666666666652 2221 234666666666666665433  23455567777


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCC-cCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP-HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL  583 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l  583 (911)
                      ++++|.++..  ..+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence            7777777632  334456777777777777774333 2 4667777778888887752  23334444555557777776


Q ss_pred             ccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccccc---CC
Q 043567          584 SGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ---IP  659 (911)
Q Consensus       584 ~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---ip  659 (911)
                      +..-+... ....|+.+++++|++. .++..+..+..+..|++.+|++...  ..+.....+..+....|.+...   ..
T Consensus       221 ~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  221 SKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             eeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            64433221 1113788888888887 3445666777888888888888754  3455566777777777776522   12


Q ss_pred             hh-hhcCCCCCeEEcCCCcCCCCCCc
Q 043567          660 NQ-ICQLTGLGMMDLSHNKFNGSIPS  684 (911)
Q Consensus       660 ~~-l~~l~~L~~L~Ls~N~l~g~ip~  684 (911)
                      .. ....+.++.+.+..|+.....+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccccccccccccccCcccccccc
Confidence            22 45567778888888877655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=1.4e-07  Score=113.68  Aligned_cols=129  Identities=25%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             CcccEEEccCCccccccCCCCCCCCCccEEEccCCcC-CcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEE
Q 043567          377 TKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF-TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFL  455 (911)
Q Consensus       377 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  455 (911)
                      ...+...+-+|.+....  ....++.|++|-+..|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            44455555555443221  112344566666666641 225566655566777777777666556667777777777777


Q ss_pred             eccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCc
Q 043567          456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN  509 (911)
Q Consensus       456 ~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  509 (911)
                      +++...+. .+|..+ ..+..|.+|++..+.-...++.....+.+|++|.+...
T Consensus       601 ~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            77777665 666654 45666666666665544444444444666666665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=5.6e-09  Score=104.23  Aligned_cols=159  Identities=19%  Similarity=0.160  Sum_probs=80.9

Q ss_pred             CCcEEeCCCCCCCc-cchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCC-CCCccCcccccCCCCCCE
Q 043567          158 RLKILNLGYNYFDD-SIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNF-INGSLESQGICELKNLFV  235 (911)
Q Consensus       158 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~  235 (911)
                      +|++||||...++- ..-..+..|.+|+.|.|.++++.+.+. ..+++-.+|+.|+++.+. ++..--.-.+.+|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            46666666666542 223335566666666666666665554 456666667777766643 221111113566777777


Q ss_pred             EeccCCcCCCCCCcc-cCCC-CCCcEEEccCCc--C-CccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEE
Q 043567          236 LNLEKNNIEDHLPNC-LNNM-TRLKVLDISFNQ--L-SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL  310 (911)
Q Consensus       236 L~Ls~n~l~~~~p~~-l~~l-~~L~~L~Ls~n~--l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~  310 (911)
                      |+|++|.+....-.. +... .+|+.|+|+++.  + ...+..-...+++|.+|||++|..-..--...+.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            777777655432111 1111 356666666542  1 1112222345666666666665422111123455555666665


Q ss_pred             ecCCCcc
Q 043567          311 LSTRNNM  317 (911)
Q Consensus       311 L~~~~~~  317 (911)
                      ++.|..+
T Consensus       345 lsRCY~i  351 (419)
T KOG2120|consen  345 LSRCYDI  351 (419)
T ss_pred             hhhhcCC
Confidence            5555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=6e-09  Score=115.56  Aligned_cols=178  Identities=25%  Similarity=0.232  Sum_probs=84.2

Q ss_pred             cccCCCCCCEEeCCCCCCCcccCcccccccCCC-CCCcEEeCCCCC--CCccchhhhcC------CCCCCEEEcCCcccC
Q 043567          124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL-KRLKILNLGYNY--FDDSIFLYLNA------LTSLTTLILRENNIQ  194 (911)
Q Consensus       124 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~--l~~~~~~~l~~------l~~L~~L~Ls~n~l~  194 (911)
                      .+.+|+.|++|.|.++.+....      .+..+ ..|+.|-.++.-  +...+....+.      .-.|.+.+.+.|.+.
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~------GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAK------GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             eeccccceeeEEecCcchhhhh------hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            4677899999999999876421      11111 123333332210  00001110110      123444555555553


Q ss_pred             CccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCccc
Q 043567          195 GSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI  274 (911)
Q Consensus       195 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  274 (911)
                       .+. ..+.-++.|+.|||++|+++ ...  .+..|+.|++|||++|.+....--....+. |+.|.+++|.++..  ..
T Consensus       178 -~mD-~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  178 -LMD-ESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             -hHH-HHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hh
Confidence             111 34445555556666666555 222  355555566666666555542111222332 55666666655522  24


Q ss_pred             ccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567          275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN  315 (911)
Q Consensus       275 l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~  315 (911)
                      +.+|++|+.||+++|-+.+.-....+..+..|++|.|.+|.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            45555666666666655543333334444455555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1e-08  Score=102.32  Aligned_cols=179  Identities=24%  Similarity=0.193  Sum_probs=129.3

Q ss_pred             CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcc-cCCccChhhhcCCCCC
Q 043567          130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENN-IQGSRTKQGLSKLKNL  208 (911)
Q Consensus       130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L  208 (911)
                      .|++||||+..++..--   ..-+..+.+|+.|.+.++++++.+...++.-.+|+.|+|+.+. ++.....-.+.+++.|
T Consensus       186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            69999999998875322   1457789999999999999999999999999999999999874 3322222357899999


Q ss_pred             CEEeCCCCCCCCccCcccccC-CCCCCEEeccCCcC---CCCCCcccCCCCCCcEEEccCCc-CCccCcccccCCCCCCe
Q 043567          209 EALDLSSNFINGSLESQGICE-LKNLFVLNLEKNNI---EDHLPNCLNNMTRLKVLDISFNQ-LSGSFPSIISNLTSLEY  283 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~-l~~L~~L~Ls~n~l---~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~  283 (911)
                      ..|+|+.|.++...-...+.. -++|+.|+|+++.-   ...+..-...+++|.+|||+.|. ++......|.+++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            999999998874432222222 26788999988642   11222234578999999999864 66555667889999999


Q ss_pred             eeccCCcCCCccChh--hhcccccccEEEecC
Q 043567          284 LALFDNNFEGTFPLS--SLANHSKLEVLLLST  313 (911)
Q Consensus       284 L~L~~n~l~~~~p~~--~l~~l~~L~~L~L~~  313 (911)
                      |.++.|..  .+|..  .+...+.|.+|++.+
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            99999863  34421  334455666666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=3.6e-08  Score=87.37  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=60.9

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      .++.|+|++|+++ .+|+++..++.|+.||++.|.+. ..|+.+..|.++-.||.-+|.+- +||..+-.-+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            4566777777777 77777877888888888888876 56777777777777877777776 566554333334445556


Q ss_pred             CCcCeecCCCCCC
Q 043567          843 YNNLSGLIPDKGQ  855 (911)
Q Consensus       843 ~N~l~g~iP~~~~  855 (911)
                      ++++.|.-|.++|
T Consensus       155 nepl~~~~~~klq  167 (177)
T KOG4579|consen  155 NEPLGDETKKKLQ  167 (177)
T ss_pred             CCcccccCccccc
Confidence            6666666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=5.6e-07  Score=89.06  Aligned_cols=93  Identities=19%  Similarity=0.300  Sum_probs=57.4

Q ss_pred             cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCC---Cccch-------hhhcCCCCCCEEEcCCcccCC
Q 043567          126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIF-------LYLNALTSLTTLILRENNIQG  195 (911)
Q Consensus       126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~-------~~l~~l~~L~~L~Ls~n~l~~  195 (911)
                      ..+..++.+|||+|.|...-...+...+.+-++|+..+++.-..   .+.++       +.+.+|++|+..+||.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            34677888888888887654433445566677788877776332   12222       345567777777777777654


Q ss_pred             ccCh---hhhcCCCCCCEEeCCCCCC
Q 043567          196 SRTK---QGLSKLKNLEALDLSSNFI  218 (911)
Q Consensus       196 ~~~~---~~l~~l~~L~~L~Ls~n~l  218 (911)
                      ..|.   +.+++-+.|++|.+++|.+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCC
Confidence            4432   3445666666777766665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=2.4e-07  Score=103.15  Aligned_cols=125  Identities=28%  Similarity=0.283  Sum_probs=89.6

Q ss_pred             ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCc-CccCcCCCcEEEc
Q 043567          476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPH-WMGNLSYLEVLLM  554 (911)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L  554 (911)
                      .|...+.+.|.+.- ...++.-++.|+.|+|++|+++..  +.+..+++|++|||++|.+. .+|. ....+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            45666677776652 234455567888888888888744  36778888899999999887 3443 333444 888888


Q ss_pred             cCcccccccchhhccCCCCcEEEccCcccccccCccc--ccccccEEEcccCccc
Q 043567          555 SKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSLS  607 (911)
Q Consensus       555 ~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~Ls~n~l~  607 (911)
                      ++|.++.  -..+.++.+|+-||+++|-+.+.-.-.+  .+..|+.|+|.+|.+.
T Consensus       240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888762  3457788888888999988877544333  6778888888888875

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=5.4e-07  Score=80.04  Aligned_cols=116  Identities=20%  Similarity=0.212  Sum_probs=82.2

Q ss_pred             cCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEE
Q 043567          569 NHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFL  647 (911)
Q Consensus       569 ~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  647 (911)
                      ....|...++++|.+...++... ..+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            34455556666666665555443 5567778888888887 67888888888888888888888 667777778888888


Q ss_pred             EccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccc
Q 043567          648 LLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT  687 (911)
Q Consensus       648 ~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  687 (911)
                      +..+|.+. .||..+..-+.....++.++++.+.-|..++
T Consensus       129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            88888876 6776655444555566677777766665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=1.9e-06  Score=86.43  Aligned_cols=85  Identities=28%  Similarity=0.305  Sum_probs=36.5

Q ss_pred             CCCCCEEEcCCcccCCccC-hhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCC
Q 043567          180 LTSLTTLILRENNIQGSRT-KQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRL  257 (911)
Q Consensus       180 l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L  257 (911)
                      ++.++.+||.+|.|+.--. ...+.++++|++|+++.|++...|... -....+|++|-|.+..+.-. ....+..++.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            3444444444444432110 012345555555555555554332221 02344555555555444321 12233445555


Q ss_pred             cEEEccCC
Q 043567          258 KVLDISFN  265 (911)
Q Consensus       258 ~~L~Ls~n  265 (911)
                      +.|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.93  E-value=4.6e-06  Score=82.75  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             ccCCCCCCEEeccCCcCCCCCCcc----cCCCCCCcEEEccCCcC
Q 043567          227 ICELKNLFVLNLEKNNIEDHLPNC----LNNMTRLKVLDISFNQL  267 (911)
Q Consensus       227 ~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l  267 (911)
                      +.+|++|+..+||+|.+....|+.    ++.-+.|.+|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            455566666666666555444432    23445555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=3.4e-05  Score=83.68  Aligned_cols=73  Identities=12%  Similarity=0.271  Sum_probs=38.1

Q ss_pred             cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567          593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD  672 (911)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~  672 (911)
                      +..+++|++++|.++ .+|.   -..+|+.|++++|.-...+|..+.  ++|+.|++++|.....+|.      +|+.|+
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEE
Confidence            566677777777655 3441   123566777766433335554442  3666666666632223442      345555


Q ss_pred             cCCCc
Q 043567          673 LSHNK  677 (911)
Q Consensus       673 Ls~N~  677 (911)
                      ++.+.
T Consensus       119 L~~n~  123 (426)
T PRK15386        119 IKGSA  123 (426)
T ss_pred             eCCCC
Confidence            54443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.5e-05  Score=57.60  Aligned_cols=36  Identities=36%  Similarity=0.634  Sum_probs=18.8

Q ss_pred             CCCEEECCCCcCCccccccccccCCCCEEeccCCcCc
Q 043567          787 EIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS  823 (911)
Q Consensus       787 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~  823 (911)
                      +|++|++++|+|+ .+|..+++|++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555555

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=4.7e-06  Score=83.78  Aligned_cols=110  Identities=25%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CCCCCEEEcCCcccCCccChhhh-cCCCCCCEEeCCCCCCCCccCc-ccccCCCCCCEEeccCCcCCCCCCcccCCCCCC
Q 043567          180 LTSLTTLILRENNIQGSRTKQGL-SKLKNLEALDLSSNFINGSLES-QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRL  257 (911)
Q Consensus       180 l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  257 (911)
                      ...++.|.+-++.|........| ...+.++.+||.+|.|+..-.. ..+.++|.|++|+++.|.+...|...-....+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            33444555555555322221222 3455666666666666522111 123456666666666666554322211234455


Q ss_pred             cEEEccCCcCCc-cCcccccCCCCCCeeeccCC
Q 043567          258 KVLDISFNQLSG-SFPSIISNLTSLEYLALFDN  289 (911)
Q Consensus       258 ~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n  289 (911)
                      +.|-|.+..+.= .....+..++.++.|.++.|
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            555555544331 11122334444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=2.6e-05  Score=56.41  Aligned_cols=38  Identities=37%  Similarity=0.639  Sum_probs=32.9

Q ss_pred             ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCc
Q 043567          762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE  800 (911)
Q Consensus       762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g  800 (911)
                      ++|++|++++|+|+ .+|.++++|++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            36889999999999 788889999999999999999983

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.72  E-value=1.5e-06  Score=91.38  Aligned_cols=87  Identities=15%  Similarity=-0.017  Sum_probs=39.4

Q ss_pred             cCCCCEEECCCCCCCCC-CchhhhhcCCcccEEEccCCccccc-cCCCC-CCCCCccEEEccCCcCCcCC-ChhHHHhcc
Q 043567          351 QFDLKYLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGN-LQLPD-DKHDFLHHLDISSNNFTGKL-PQDMGIILQ  426 (911)
Q Consensus       351 ~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~~L~~L~ls~n~l~~~i-p~~~~~~l~  426 (911)
                      +..|+.|+.+++..-+. .-..+.++..+|+++.+..++.-+. .-... .+++.|+.+++..+...-.. -..+...++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            34566666666543222 2223344566666666666653211 11111 25555666665555432111 011112345


Q ss_pred             CCcEEEcccCc
Q 043567          427 KLLYMDMSNNH  437 (911)
Q Consensus       427 ~L~~L~Ls~n~  437 (911)
                      .|+++.+++|.
T Consensus       373 ~lr~lslshce  383 (483)
T KOG4341|consen  373 RLRVLSLSHCE  383 (483)
T ss_pred             hhccCChhhhh
Confidence            55555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=2.1e-05  Score=92.81  Aligned_cols=149  Identities=25%  Similarity=0.301  Sum_probs=94.9

Q ss_pred             CCCcEEeCCCCCC-Cccchhhhc-CCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCC
Q 043567          157 KRLKILNLGYNYF-DDSIFLYLN-ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF  234 (911)
Q Consensus       157 ~~L~~L~Ls~n~l-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  234 (911)
                      .+|++||+++... ...-|..++ .+|+|++|.+++-.+...--.....++++|+.||+|+++++ .+  ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence            5688888887653 222333333 57888888888766643222244577888888888888887 33  3578888888


Q ss_pred             EEeccCCcCCC-CCCcccCCCCCCcEEEccCCcCCccC--c----ccccCCCCCCeeeccCCcCCCccChhhhccccccc
Q 043567          235 VLNLEKNNIED-HLPNCLNNMTRLKVLDISFNQLSGSF--P----SIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE  307 (911)
Q Consensus       235 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~  307 (911)
                      +|.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..|++|+.||.++..+.+.+-...+...++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88887766554 12235677888888888876644221  1    12234788888888887776554433344444444


Q ss_pred             E
Q 043567          308 V  308 (911)
Q Consensus       308 ~  308 (911)
                      .
T Consensus       279 ~  279 (699)
T KOG3665|consen  279 Q  279 (699)
T ss_pred             h
Confidence            3

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.55  E-value=5.2e-06  Score=87.48  Aligned_cols=62  Identities=26%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             CCcEEEccCCcCCcc--CcccccCCCCCCeeeccCCcCCCccC-hhhhcccccccEEEecCCCcc
Q 043567          256 RLKVLDISFNQLSGS--FPSIISNLTSLEYLALFDNNFEGTFP-LSSLANHSKLEVLLLSTRNNM  317 (911)
Q Consensus       256 ~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~l~~l~~L~~L~L~~~~~~  317 (911)
                      .|+.|.++++.-.+.  +-....+++++++|.+.++....+.. ...-..+++|+++++..+..+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i  203 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI  203 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence            466666766543221  22233456677777666664221111 112234566666666544433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.0003  Score=76.54  Aligned_cols=54  Identities=13%  Similarity=0.014  Sum_probs=25.0

Q ss_pred             ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC
Q 043567          474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN  533 (911)
Q Consensus       474 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  533 (911)
                      +.+++.|++++|.++.. | .  -.++|++|.+++|.--..+|..+  .++|++|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            45566666666654432 2 1  11245555555533222334332  234555555555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00019  Score=68.77  Aligned_cols=83  Identities=31%  Similarity=0.335  Sum_probs=41.8

Q ss_pred             CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCC
Q 043567          130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLE  209 (911)
Q Consensus       130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  209 (911)
                      ....+||++|.+...      ..|..+++|..|.|++|.|+...|..-.-+++|++|.|.+|+|......+.+..+++|+
T Consensus        43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            445666666666544      34555666666666666665544444444455555555555543221112233444444


Q ss_pred             EEeCCCCCC
Q 043567          210 ALDLSSNFI  218 (911)
Q Consensus       210 ~L~Ls~n~l  218 (911)
                      +|.+-+|.+
T Consensus       117 ~Ltll~Npv  125 (233)
T KOG1644|consen  117 YLTLLGNPV  125 (233)
T ss_pred             eeeecCCch
Confidence            444444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.28  E-value=0.00048  Score=66.04  Aligned_cols=105  Identities=27%  Similarity=0.293  Sum_probs=66.9

Q ss_pred             CCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEc
Q 043567          183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI  262 (911)
Q Consensus       183 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  262 (911)
                      =+.++|.+.++. .+. .-=.-+.+...+||++|.+. .++  .|..+++|.+|.|++|+|+.+-|.--..+++|+.|.|
T Consensus        21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccc-chh-hccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            456677776653 111 10112346677888888875 444  3777888888888888888766654455677888888


Q ss_pred             cCCcCCccC-cccccCCCCCCeeeccCCcCC
Q 043567          263 SFNQLSGSF-PSIISNLTSLEYLALFDNNFE  292 (911)
Q Consensus       263 s~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~  292 (911)
                      .+|++.... -.-+..+++|++|.+-+|..+
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchh
Confidence            888766321 123556677777777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.27  E-value=0.0006  Score=63.21  Aligned_cols=121  Identities=21%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             hcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 043567          177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTR  256 (911)
Q Consensus       177 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  256 (911)
                      |.++++|+.+.+.. .+. .+....|.++++|+.+++..+ +. .++..+|.++++|+.+.+.+ .+.......|..+++
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            33444444444442 222 233344555555555555443 33 34444455555555555543 333323344555555


Q ss_pred             CcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccc
Q 043567          257 LKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL  306 (911)
Q Consensus       257 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L  306 (911)
                      |+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            555555443 332333344444 555555543 222 3333444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00011  Score=73.52  Aligned_cols=88  Identities=27%  Similarity=0.341  Sum_probs=57.8

Q ss_pred             cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCC--CCCccchhhhcCCCCCCEEEcCCcccCCccChhhhc
Q 043567          126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN--YFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLS  203 (911)
Q Consensus       126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~  203 (911)
                      ..+..|+.|++.+..++..      ..+-.+++|++|.+|.|  .+.+.++.....+++|++|++++|++...-....+.
T Consensus        40 d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             ccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            4456667777777776654      45777788888888888  555666666666788888888888776322222345


Q ss_pred             CCCCCCEEeCCCCCCC
Q 043567          204 KLKNLEALDLSSNFIN  219 (911)
Q Consensus       204 ~l~~L~~L~Ls~n~l~  219 (911)
                      .+++|..||+.+|..+
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            5566666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.21  E-value=0.00081  Score=62.32  Aligned_cols=99  Identities=21%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             hhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCC
Q 043567          176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT  255 (911)
Q Consensus       176 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  255 (911)
                      .|.++++|+.+.+..+ +. .++...|.+++.|+.+.+.+ .+. .++...|..+++|+.+++..+ +.......|.++ 
T Consensus        30 ~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-  103 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-  103 (129)
T ss_dssp             TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred             hccccccccccccccc-cc-ccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence            3444444444444432 22 22233444444455555543 222 233334455555555555443 333333344444 


Q ss_pred             CCcEEEccCCcCCccCcccccCCCCC
Q 043567          256 RLKVLDISFNQLSGSFPSIISNLTSL  281 (911)
Q Consensus       256 ~L~~L~Ls~n~l~~~~p~~l~~l~~L  281 (911)
                      +|+.+.+.. .+.......|.++++|
T Consensus       104 ~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TT-B-SS----GGG-----
T ss_pred             CceEEEECC-CccEECCccccccccC
Confidence            555555543 2222333444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.18  E-value=0.00011  Score=86.89  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=58.2

Q ss_pred             CCCCEEEcCCcccCCcc-ChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcE
Q 043567          181 TSLTTLILRENNIQGSR-TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKV  259 (911)
Q Consensus       181 ~~L~~L~Ls~n~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  259 (911)
                      .+|++||+++......- +...-..+|+|+.|.+++-.+...--.....++++|..||+|+++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56777777775432111 1122245677777777665553211112345566666666666666653  45566666666


Q ss_pred             EEccCCcCCc-cCcccccCCCCCCeeeccCCcC
Q 043567          260 LDISFNQLSG-SFPSIISNLTSLEYLALFDNNF  291 (911)
Q Consensus       260 L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l  291 (911)
                      |.+.+=.+.. ..-..+.+|++|++||+|....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            6665544432 1122445566666666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=8.5e-05  Score=74.27  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             CCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCC
Q 043567          128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKN  207 (911)
Q Consensus       128 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  207 (911)
                      +.+.+.|++.+|.++++      ....+++.|++|.||-|.|+..  ..+..|++|+.|.|..|.|...-....+.++++
T Consensus        18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            44566777777777665      3455566666666666665532  224455555555555555543222233445555


Q ss_pred             CCEEeCCCCCCC
Q 043567          208 LEALDLSSNFIN  219 (911)
Q Consensus       208 L~~L~Ls~n~l~  219 (911)
                      |+.|.|..|.-.
T Consensus        90 Lr~LWL~ENPCc  101 (388)
T KOG2123|consen   90 LRTLWLDENPCC  101 (388)
T ss_pred             hhhHhhccCCcc
Confidence            555555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.28  E-value=0.003  Score=63.53  Aligned_cols=67  Identities=30%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             hhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCC--CCCCccCcccccCCCCCCEEeccCCcCC
Q 043567          174 FLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSN--FINGSLESQGICELKNLFVLNLEKNNIE  244 (911)
Q Consensus       174 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~i~~~~~~~l~~L~~L~Ls~n~l~  244 (911)
                      ......+..|+.|++.+..++. .  ..+-.+++|++|++|.|  ++.+.++.. ..++++|++|++++|++.
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt-~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTT-L--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccccccchhhhhhhccceee-c--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence            3333344455555555444431 1  12344555555555555  333333321 233355555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.00084  Score=67.36  Aligned_cols=68  Identities=22%  Similarity=0.151  Sum_probs=37.3

Q ss_pred             HHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccc
Q 043567          421 MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR  490 (911)
Q Consensus       421 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~  490 (911)
                      ++..++.|+.|.|+-|+++..-|  +..|++|++|+|..|.|..--.-..+.++++|+.|+|..|.-.|.
T Consensus        36 ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence            33446666666666666654333  556666666666666665322233445555555555555544443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.00  E-value=0.0029  Score=37.98  Aligned_cols=19  Identities=47%  Similarity=0.761  Sum_probs=9.0

Q ss_pred             CCEEeccCCcCcccCCCCCC
Q 043567          812 IESLDLSHNRLSGQIPPKLT  831 (911)
Q Consensus       812 L~~LdLs~N~l~g~ip~~l~  831 (911)
                      |++|||++|+++ .||++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.92  E-value=0.0014  Score=76.14  Aligned_cols=110  Identities=21%  Similarity=0.098  Sum_probs=46.5

Q ss_pred             CCCCcEEeCCCCCCCcc--chhhhcCCCCCCEEEcCCc-ccCCccC---hhhhcCCCCCCEEeCCCCC-CCCccCccccc
Q 043567          156 LKRLKILNLGYNYFDDS--IFLYLNALTSLTTLILREN-NIQGSRT---KQGLSKLKNLEALDLSSNF-INGSLESQGIC  228 (911)
Q Consensus       156 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~i~~~~~~  228 (911)
                      ++.|+.|.+..+.--..  .-.....++.|+.|+++++ ......+   ......+++|+.|+++++. ++. ..-..++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence            44555555554432111  2333445555555555542 1100010   1123344555666665555 331 1111122


Q ss_pred             -CCCCCCEEeccCCc-CCCCC-CcccCCCCCCcEEEccCCc
Q 043567          229 -ELKNLFVLNLEKNN-IEDHL-PNCLNNMTRLKVLDISFNQ  266 (911)
Q Consensus       229 -~l~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~Ls~n~  266 (911)
                       .|++|++|.+.++. +++.. -.....++.|++|+++.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence             25566666655554 33321 1122345556666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.73  E-value=0.004  Score=37.39  Aligned_cols=20  Identities=55%  Similarity=0.773  Sum_probs=10.4

Q ss_pred             CCEEECCCCcCCccccccccc
Q 043567          788 IPVLNMSHNFLSESIPESFSN  808 (911)
Q Consensus       788 L~~L~Ls~N~l~g~ip~~l~~  808 (911)
                      |++|||++|+|+ .||++|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 45554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.55  E-value=0.0034  Score=72.92  Aligned_cols=225  Identities=22%  Similarity=0.123  Sum_probs=119.1

Q ss_pred             cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCC-CCCcc----chhhhcCCCCCCEEEcCCcc-cCCccCh
Q 043567          126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN-YFDDS----IFLYLNALTSLTTLILRENN-IQGSRTK  199 (911)
Q Consensus       126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-l~~~~~~  199 (911)
                      ...+.|+.|.+.++.-.....  .......+++|+.|+++++ .....    .......+++|+.|+++.+. +++..-.
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            346788888888774332210  1145677888888888873 21111    12344567888888888887 5433222


Q ss_pred             hhhcCCCCCCEEeCCCCC-CCCccCcccccCCCCCCEEeccCCcCCCC--CCcccCCCCCCcEEEccCCc----CC----
Q 043567          200 QGLSKLKNLEALDLSSNF-INGSLESQGICELKNLFVLNLEKNNIEDH--LPNCLNNMTRLKVLDISFNQ----LS----  268 (911)
Q Consensus       200 ~~l~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~----l~----  268 (911)
                      .....+++|++|.+.++. ++..--......++.|++|+++++.....  +.....++++|+.|.+....    ++    
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l  342 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL  342 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence            222347888888877776 55332233456678888888887765321  22223345555554433221    11    


Q ss_pred             ---------ccCcccccCCCCCCeeeccCCcCCCccC-hhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCC
Q 043567          269 ---------GSFPSIISNLTSLEYLALFDNNFEGTFP-LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPN  338 (911)
Q Consensus       269 ---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~  338 (911)
                               ......+..+++++.+.+..+... ... ...+..++.|+ ..+..          .......++.|++..
T Consensus       343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~L~l~~  410 (482)
T KOG1947|consen  343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRVLNLSD  410 (482)
T ss_pred             HHhhccCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccc-hHHHH----------HhccCCccceEeccc
Confidence                     011122345666666666666522 222 23344444442 11110          111112278888888


Q ss_pred             CCCCCCCh--hhhc-cCCCCEEECCCCCC
Q 043567          339 CSLNVIPP--FLLH-QFDLKYLDLSHNDL  364 (911)
Q Consensus       339 n~l~~ip~--~l~~-~~~L~~L~Ls~n~l  364 (911)
                      +...+...  .... +..++.+++.++..
T Consensus       411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  411 CRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             CccccccchHHHhhhhhccccCCccCccc
Confidence            87633221  1111 55677777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.06  E-value=0.0028  Score=71.83  Aligned_cols=164  Identities=28%  Similarity=0.275  Sum_probs=95.0

Q ss_pred             CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhc----CC-CCCCEEEcCCcccCCccC---hhh
Q 043567          130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN----AL-TSLTTLILRENNIQGSRT---KQG  201 (911)
Q Consensus       130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~---~~~  201 (911)
                      .+..|+|.+|.+.......+..++.....|..|++++|.+.+..-..+.    .. ..+++|++..|.+++...   ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3677778888777665555556677778888888888877644333222    22 456667777776654322   234


Q ss_pred             hcCCCCCCEEeCCCCCCC--Ccc-Cccc----ccCCCCCCEEeccCCcCCCC----CCcccCCCCC-CcEEEccCCcCCc
Q 043567          202 LSKLKNLEALDLSSNFIN--GSL-ESQG----ICELKNLFVLNLEKNNIEDH----LPNCLNNMTR-LKVLDISFNQLSG  269 (911)
Q Consensus       202 l~~l~~L~~L~Ls~n~l~--~~i-~~~~----~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~-L~~L~Ls~n~l~~  269 (911)
                      +....+++.+|++.|.+.  |.. ....    +....++++|++++|.++..    +...+...+. ++.|++..|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            555777777777777763  100 0111    22456677777777776532    1122333444 5567777777664


Q ss_pred             c----CcccccCC-CCCCeeeccCCcCCC
Q 043567          270 S----FPSIISNL-TSLEYLALFDNNFEG  293 (911)
Q Consensus       270 ~----~p~~l~~l-~~L~~L~L~~n~l~~  293 (911)
                      .    ..+.+..+ ..+++++++.|.++.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            3    22334444 556777777777653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.02  E-value=0.0033  Score=71.33  Aligned_cols=170  Identities=26%  Similarity=0.269  Sum_probs=120.7

Q ss_pred             cccCCCCCCEEeCCCCCCCcccCcccccccCCC-CCCcEEeCCCCCCCc----cchhhhcCCCCCCEEEcCCcccCC--c
Q 043567          124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL-KRLKILNLGYNYFDD----SIFLYLNALTSLTTLILRENNIQG--S  196 (911)
Q Consensus       124 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~--~  196 (911)
                      .+.....|+.|++++|.+.+.....+...+... +.|++|++..|.+++    .+...+.....++.++++.|.+..  .
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            567788999999999999854333333445554 678889999998864    356677788999999999998741  1


Q ss_pred             c-Chhhh----cCCCCCCEEeCCCCCCCCcc---CcccccCCCC-CCEEeccCCcCCCC----CCcccCCC-CCCcEEEc
Q 043567          197 R-TKQGL----SKLKNLEALDLSSNFINGSL---ESQGICELKN-LFVLNLEKNNIEDH----LPNCLNNM-TRLKVLDI  262 (911)
Q Consensus       197 ~-~~~~l----~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~~-L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~L  262 (911)
                      . ....+    ....++++|++++|.++...   -..++...+. +..+++..|.+.+.    ....+..+ ..++++++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence            1 11223    35778999999999986110   0123445555 77799999998754    23345555 67899999


Q ss_pred             cCCcCCccC----cccccCCCCCCeeeccCCcCCC
Q 043567          263 SFNQLSGSF----PSIISNLTSLEYLALFDNNFEG  293 (911)
Q Consensus       263 s~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~  293 (911)
                      +.|.++...    ...+..++.++.+.++.|.+..
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            999998643    3445677889999999998764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.84  E-value=0.22  Score=27.69  Aligned_cols=10  Identities=30%  Similarity=0.497  Sum_probs=3.1

Q ss_pred             CCEEECCCCc
Q 043567          788 IPVLNMSHNF  797 (911)
Q Consensus       788 L~~L~Ls~N~  797 (911)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.82  E-value=0.011  Score=58.05  Aligned_cols=88  Identities=22%  Similarity=0.192  Sum_probs=42.3

Q ss_pred             hhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCC
Q 043567          175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNM  254 (911)
Q Consensus       175 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  254 (911)
                      ..+..+..-+.||++.|++... . ..|+.++.|+.||++.|++. ..|. .++....++.+++..|..+. .|.+++..
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~-~-~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~-~p~s~~k~  110 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNL-G-KNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQ-QPKSQKKE  110 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhh-c-cchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhh-CCcccccc
Confidence            3344555555566555554311 1 22444455555555555554 3333 24444455555555444443 44455555


Q ss_pred             CCCcEEEccCCcC
Q 043567          255 TRLKVLDISFNQL  267 (911)
Q Consensus       255 ~~L~~L~Ls~n~l  267 (911)
                      ++++++++-.|.+
T Consensus       111 ~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  111 PHPKKNEQKKTEF  123 (326)
T ss_pred             CCcchhhhccCcc
Confidence            5555555544443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.14  E-value=0.021  Score=56.10  Aligned_cols=83  Identities=18%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567          762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV  841 (911)
Q Consensus       762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  841 (911)
                      ...+.||+|.|++. ..-..+.-++.|..||++.|++. ..|..++++..+..+++-.|.++ ..|-++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            35677899999887 45566777888888999999886 78888888888888888888887 67888888888888888


Q ss_pred             cCCcCe
Q 043567          842 SYNNLS  847 (911)
Q Consensus       842 s~N~l~  847 (911)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            887754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.38  E-value=0.63  Score=29.06  Aligned_cols=19  Identities=47%  Similarity=0.586  Sum_probs=9.1

Q ss_pred             CCCCEEeCCCCCCCCccCcc
Q 043567          206 KNLEALDLSSNFINGSLESQ  225 (911)
Q Consensus       206 ~~L~~L~Ls~n~l~~~i~~~  225 (911)
                      ++|++|+|++|+|+ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555554 44443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.38  E-value=0.63  Score=29.06  Aligned_cols=19  Identities=47%  Similarity=0.586  Sum_probs=9.1

Q ss_pred             CCCCEEeCCCCCCCCccCcc
Q 043567          206 KNLEALDLSSNFINGSLESQ  225 (911)
Q Consensus       206 ~~L~~L~Ls~n~l~~~i~~~  225 (911)
                      ++|++|+|++|+|+ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555554 44443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.40  E-value=0.22  Score=30.53  Aligned_cols=11  Identities=27%  Similarity=0.567  Sum_probs=3.5

Q ss_pred             CCEEECCCCcC
Q 043567          788 IPVLNMSHNFL  798 (911)
Q Consensus       788 L~~L~Ls~N~l  798 (911)
                      |+.|+|++|+|
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33333333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.13  E-value=1  Score=28.13  Aligned_cols=13  Identities=38%  Similarity=0.532  Sum_probs=5.9

Q ss_pred             CCCEEECCCCcCC
Q 043567          787 EIPVLNMSHNFLS  799 (911)
Q Consensus       787 ~L~~L~Ls~N~l~  799 (911)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.13  E-value=1  Score=28.13  Aligned_cols=13  Identities=38%  Similarity=0.532  Sum_probs=5.9

Q ss_pred             CCCEEECCCCcCC
Q 043567          787 EIPVLNMSHNFLS  799 (911)
Q Consensus       787 ~L~~L~Ls~N~l~  799 (911)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	911
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-64
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-64
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-07
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-07
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		7e-07
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		4e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		5e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-05
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		8e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		9e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  242 bits (617), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 223/727 (30%), Positives = 345/727 (47%), Gaps = 110/727 (15%)
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFING---SLESQGICELKNLFVLNLEKNNIE 244
           L  ++I GS +  G     +L +LDLS N ++G   +L S G C    L  LN+  N ++
Sbjct: 84  LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS--GLKFLNVSSNTLD 139
Query: 245 DHLPNCLNN---MTRLKVLDISFNQLSGSFPSIISNLTS-----LEYLALFDNNFEGTFP 296
              P  ++    +  L+VLD+S N +SG+  +++  + S     L++LA+  N   G   
Sbjct: 140 --FPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
           +S   N   LE L +S+ N             F   +  L +CS             L++
Sbjct: 196 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 227
Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGK 416
           LD+S N L G F + A+   T+L++L +++N F G   +P      L +L ++ N FTG+
Sbjct: 228 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 284
Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIAS-------------------------SIAEMKE 451
           +P  +      L  +D+S NHF G +                           ++ +M+ 
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ-----LQYLYL 506
           L+ LDLS N FSGEL  +L     SLL L LS NNF G I P   NL Q     LQ LYL
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 401
Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
           +NN F+GKI   L    +LV L +S N LSG IP  +G+LS L  L +  N  EG IP +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 567 LLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
           L+  + L+   +  N L+G + +   N +++  + L  N L+G IP  + R  NL  L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 626 RDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
            +N FSG IP ++ +C                          L  +DL+ N FNG+IP+ 
Sbjct: 522 SNNSFSGNIPAELGDCRS------------------------LIWLDLNTNLFNGTIPAA 557
Query: 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745
               +     N    +     +++   +        ++L+   + SE+    +      +
Sbjct: 558 MFKQSGKIAANFIAGK--RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPES 805
                  +      N   M+ LD+S N L+G IP EIG +  + +LN+ HN +S SIP+ 
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 806 FSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYR 865
             +L+ +  LDLS N+L G+IP  ++ L  L+  ++S NNLSG IP+ GQF TF  + + 
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 866 GNLHLCG 872
            N  LCG
Sbjct: 736 NNPGLCG 742

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  241 bits (616), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 225/730 (30%), Positives = 346/730 (47%), Gaps = 116/730 (15%)
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFING---SLESQGICELKNLFVLNLEKNNIE 244
           L  ++I GS +  G     +L +LDLS N ++G   +L S G C    L  LN+  N ++
Sbjct: 81  LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS--GLKFLNVSSNTLD 136
Query: 245 DHLPNCLNN---MTRLKVLDISFNQLSGSFPSIISNLTS-----LEYLALFDNNFEGTFP 296
              P  ++    +  L+VLD+S N +SG+  +++  + S     L++LA+  N   G   
Sbjct: 137 --FPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD 192
Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
           +S   N   LE L +S+ N             F   +  L +CS             L++
Sbjct: 193 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 224
Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGK 416
           LD+S N L G F + A+   T+L++L +++N F G   +P      L +L ++ N FTG+
Sbjct: 225 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 281
Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIAS-------------------------SIAEMKE 451
           +P  +      L  +D+S NHF G +                           ++ +M+ 
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ-----LQYLYL 506
           L+ LDLS N FSGEL  +L     SLL L LS NNF G I P   NL Q     LQ LYL
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 398
Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
           +NN F+GKI   L    +LV L +S N LSG IP  +G+LS L  L +  N  EG IP +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 567 LLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
           L+  + L+   +  N L+G + +   N +++  + L  N L+G IP  + R  NL  L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 626 RDNGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
            +N FSG IP ++ +C                          L  +DL+ N FNG+IP+ 
Sbjct: 519 SNNSFSGNIPAELGDCRS------------------------LIWLDLNTNLFNGTIPAA 554
Query: 686 FTNITLWSVGNL---DRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL 742
               +     N     RY      +++   +        ++L+   + SE+    +    
Sbjct: 555 MFKQSGKIAANFIAGKRY-----VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI 802
             +       +      N   M+ LD+S N L+G IP EIG +  + +LN+ HN +S SI
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 803 PESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES 862
           P+   +L+ +  LDLS N+L G+IP  ++ L  L+  ++S NNLSG IP+ GQF TF  +
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
Query: 863 SYRGNLHLCG 872
            +  N  LCG
Sbjct: 730 KFLNNPGLCG 739

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 35/250 (14%)
Query: 628 NGFSGVIPHQINECSXXXXXXXXXXXXEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT 687
           N   G IP  I + +             G IP+ + Q+  L  +D S+N  +G++P   +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747
           ++                        N +GI +      G +        +F  L     
Sbjct: 147 SLP-----------------------NLVGITFDGNRISGAIPDSYG---SFSKLFTSMT 180
Query: 748 VTKNRY-----EVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI 802
           +++NR        +   NL ++   DLS N L G+     G  +    ++++ N L+  +
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 803 PESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES 862
            +   + K +  LDL +NR+ G +P  LT+L FL + NVS+NNL G IP  G    FD S
Sbjct: 238 GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 863 SYRGNLHLCG 872
           +Y  N  LCG
Sbjct: 297 AYANNKCLCG 306

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 128/312 (41%), Gaps = 61/312 (19%)
Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
           F  F +LQ LDL+    +G+        +  L  LK L L  N+FD    +      SLT
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSG-----MKGLNLLKKLVLSVNHFDQLCQISAANFPSLT 325
Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGS----------------------- 221
            L +R N  +       L KL NL+ LDLS N I  S                       
Sbjct: 326 HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 222 --LESQGICELKNLFVLNLEKNNIEDHLPNC-LNNMTRLKVLDISFNQLSGSFPSIISNL 278
             L+SQ   E   L +L+L    +  + P     N+  L+VL++++  L  S   +++ L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 279 TSLEYLALFDNNFE-GTFPLSSLANH-SKLEVLLLST----------------------R 314
             L +L L  N+F+ GT   ++L      LEVL+LS+                       
Sbjct: 446 PVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLS 505
Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK-YLDLSHNDLDGA-----F 368
           +N L   + + L   +   L L   S+N+I P LL     +  ++LSHN LD       F
Sbjct: 506 HNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Query: 369 PTWALQNNTKLE 380
            TW  +N  KLE
Sbjct: 566 LTWYKENLHKLE 577

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 157/380 (41%), Gaps = 76/380 (20%)
Query: 127 PFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN----------YFDDSIFLY 176
           P   L+ LD  NN+   +    + + + SL++   L+L +N           FD +IF  
Sbjct: 148 PARNLKVLDFQNNAIHYI----SREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQS 203
Query: 177 LNALTSLTTLILRENNIQGSRTKQ-GLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
           LN       L +  N +Q S T+   L   ++++  D+SS  +      +G+CE+ ++  
Sbjct: 204 LN-FGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAML------KGLCEM-SVES 255
Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           LNL+++   D         T+L+ LD++   L G  PS +  L  L+ L L  N+F+   
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD--- 311
Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK 355
                                + Q+   NF P+     +R     L++    L    +L+
Sbjct: 312 --------------------QLCQISAANF-PSLTHLYIRGNVKKLHLGVGCLEKLGNLQ 350
Query: 356 YLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
            LDLSHND++ +   +  L+N + L+ L L++N   G       +   L  LD++     
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 415 GKLPQD-------MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS---- 463
              PQ        + ++     ++D SN H        +A +  LR L+L  N+F     
Sbjct: 411 INAPQSPFQNLHFLQVLNLTYCFLDTSNQHL-------LAGLPVLRHLNLKGNHFQDGTI 463
Query: 464 ---------GELSAALLTSC 474
                    G L   +L+SC
Sbjct: 464 TKTNLLQTVGSLEVLILSSC 483

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 162 LNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSK-LKNLEALDLSSNFING 220
           LN   N F DS+F   + L  L TLIL+ N ++       ++K + +LE LD+S N +N 
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 221 SLESQGICELKNLFVLNLEKNNIEDHLPNCL---------------------NNMTRLKV 259
               +     +++ VLNL  N +   +  CL                      ++  L+ 
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 260 LDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           L+++ NQL      +   LTSL+Y+ L DN ++ T P
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 162 LNLGYNYFDDSIFLYLNALTSLTTLILRENNIQG-SRTKQGLSKLKNLEALDLSSNFING 220
           L+   N   D++F     LT L TLIL+ N ++  S+  +  +++K+L+ LD+S N ++ 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 221 SLESQGICEL-KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLT 279
             E +G C   K+L  LN+  N + D +  CL    R+KVLD+  N++  S P  +  L 
Sbjct: 389 D-EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE 444
Query: 280 SLEYLALFDNNFEGT 294
           +L+ L +  N  +  
Sbjct: 445 ALQELNVASNQLKSV 459

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
           + + + +  ++ + F     L+ LDLS+N+   V +   +  LG L  L +   G     
Sbjct: 61  WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG 120
Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
             +F     L +L  L L++NN+Q +        L NL  L L  N I  S+       L
Sbjct: 121 PGLF---RGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGL 175
Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
            +L  L L +N++    P+   ++ RL  L +  N LS     ++  L SL+YL L DN
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 132/318 (41%), Gaps = 63/318 (19%)
Query: 120 LNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNA 179
           L+ S F  F  +Q LDL+     G+      + + SLK+L    L  N FD    +   +
Sbjct: 268 LSSSTFRCFTRVQELDLTAAHLNGLPS--GIEGMNSLKKLV---LNANSFDQLCQINAAS 322
Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGS------------------ 221
             SL  L ++ N  +     + L KL+NL+ LDLS + I  S                  
Sbjct: 323 FPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 222 -------LESQGICELKNLFVLNLEKNNIEDHLPNC-LNNMTRLKVLDISFNQLSGSFPS 273
                  LE Q   E   L +L++   ++    P+    N+  L+VL++S   L  S   
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQH 442
Query: 274 IISNLTSLEYLALFDNNFE-GTFPLSSLANH-SKLEVLLLSTRNNMLQVQTENFLPTFQL 331
           +++ L  L +L L  N+F+ G+   ++L      LE+L+LS+  N+L +  + F     +
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSC-NLLSIDQQAFHGLRNV 501
Query: 332 KVLRLPNCSL-----------------------NVIPPFLLHQFDLK-YLDLSHNDLDGA 367
             L L + SL                        +IPP LL     +  ++LSHN LD  
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCT 561
Query: 368 -----FPTWALQNNTKLE 380
                F TW  +N  KLE
Sbjct: 562 CSNIHFITWYKENLHKLE 579

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 30/336 (8%)
Query: 225 QGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
           +G+C++ ++  +NL+K+   D   +     TR++ LD++   L+G  PS I  + SL+ L
Sbjct: 248 EGLCDM-SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 285 ALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI 344
            L  N+F+    +++ A+   L  L +  + NM ++     L T  L+ L          
Sbjct: 306 VLNANSFDQLCQINA-ASFPSLRDLYI--KGNMRKLD----LGTRCLEKLE--------- 349
Query: 345 PPFLLHQFDLKYLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL 403
                   +L+ LDLSH+D++ +      L+N   L+ L L+ N   G       +   L
Sbjct: 350 --------NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQL 401
Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
             LD++  +   K P      L  L  +++S+   + +    +A +++LR L+L  N+F 
Sbjct: 402 ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 464 -GELSAA-LLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK 521
            G +S   LL    SL  L LS  N        +  L  + +L L +N  +G   + L  
Sbjct: 462 DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSH 521
Query: 522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
            K L  L M+SN +    PH +  LS   ++ +S N
Sbjct: 522 LKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHN 556

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 130 ELQSLD--LSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
           EL S+D  ++NNS     + ++   +  L  ++ L LG N   D     L  LT+LT LI
Sbjct: 39  ELNSIDQIIANNS-----DIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLI 91
Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L  N +Q S       KL NL+ L L  N +  SL      +L NL  LNL  N ++   
Sbjct: 92  LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
               + +T L  LD+S+NQL      +   LT L+ L L+ N  +
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 19/218 (8%)
Query: 133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENN 192
           S+D S+     +  N   DT       K L+L  N          + LT L  L L +N 
Sbjct: 20  SVDCSSKKLTAIPSNIPADT-------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 193 IQGSRTKQGLSK-LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCL 251
           +Q      G+ K LKNLE L ++ N +  +L      +L NL  L L++N ++   P   
Sbjct: 73  LQ--TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 252 NNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLL 311
           +++T+L  L + +N+L      +   LTSL+ L L++N  +   P  +    ++L+ L L
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL 188
Query: 312 STRNNMLQVQTENFLPTFQ-LKVLRLP----NCSLNVI 344
              NN L+   E    + + LK+L+L     +C+ N I
Sbjct: 189 D--NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 25  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 79  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   N   ++ P  L +   L+ LD+S N +  
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLNFGNQVTDLKP--LANLTTLERLDISSNKVSD 186
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 187 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 236
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 237 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 294
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 295 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKVS 339

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
           + + +++  ++ + F     L+ LDLS+N+     +   +  LG L  L +   G     
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
             +F     L +L  L L++N +Q +        L NL  L L  N I+ S+  +    L
Sbjct: 122 PGLF---RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 176
Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
            +L  L L +N +    P+   ++ RL  L +  N LS      ++ L +L+YL L DN
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 29  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 82
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 83  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 138
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   N   ++ P  L +   L+ LD+S N +  
Sbjct: 139 EL----SSNTISDISALSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 190
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 191 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 240
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 241 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 298
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 299 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFANNKVS 343

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 111 YTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD 170
           + + +++  ++ + F     L+ LDLS+N+     +   +  LG L  L +   G     
Sbjct: 61  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 120
Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
             +F     L +L  L L++N +Q +        L NL  L L  N I+ S+  +    L
Sbjct: 121 PGLF---RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 175
Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
            +L  L L +N +    P+   ++ RL  L +  N LS      ++ L +L+YL L DN
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 52/347 (14%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 25  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 79  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   +  +  + P L +   L+ LD+S N +  
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLSFSSNQVTDLKP-LANLTTLERLDISSNKVSD 187
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 188 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 237
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 238 LTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKVS 340

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 30  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 83
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 84  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   N   ++ P  L +   L+ LD+S N +  
Sbjct: 140 EL----SSNTISDISALSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 191
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 192 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 241
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 242 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 300 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 344

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 25  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 79  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   N   ++ P  L +   L+ LD+S N +  
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLNFGNQVTDLKP--LANLTTLERLDISSNKVSD 186
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 187 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 236
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 237 LTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 294
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 295 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 339

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 52/347 (14%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 25  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 79  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   +  +  + P L +   L+ LD+S N +  
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLSFSSNQVTDLKP-LANLTTLERLDISSNKVSD 187
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 188 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 237
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 238 LTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 340

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 52/347 (14%)
Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +L + N+  + ++  L ++  L+A  L    I+G      +  L NL  +N   N + D 
Sbjct: 25  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDI 78
Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
            P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      PL +L N ++L
Sbjct: 79  TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
           E+    + N +  +   + L + Q   L   +  +  + P L +   L+ LD+S N +  
Sbjct: 135 EL----SSNTISDISALSGLTSLQ--QLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD 187
Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-- 424
                 L   T LE L+ TNN  +    L       L +LD  S    G   +D+G +  
Sbjct: 188 IS---VLAKLTNLESLIATNNQISDITPL-----GILTNLDELS--LNGNQLKDIGTLAS 237
Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF--------- 475
           L  L  +D++NN    N+A  ++ + +L  L L  N  S     A LT+           
Sbjct: 238 LTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 295
Query: 476 ----------SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
                     +L +L L  NN    I P   +LT+LQ L+  NNK S
Sbjct: 296 EDISPISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFYNNKVS 340

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
           + LTSLT L L  N +Q S      +KL +L  L+LS+N +  SL +    +L  L  L 
Sbjct: 49  DELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106
Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           L  N ++       + +T+LK L +  NQL      +   LTSL+Y+ L DN ++ T P
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
           L +LE L ++ N    +       EL+NL  L+L +  +E   P   N+++ L+VL+++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           NQL      I   LTSL+ + L  N ++ + P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	911
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  567 bits (1463), Expect = 0.0
 Identities = 230/869 (26%), Positives = 354/869 (40%), Gaps = 118/869 (13%)

Query: 36  ACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQ 95
             L  E   L   K              +L  W      + + C + GV C     +V  
Sbjct: 8   QSLYREIHQLISFKDVLPD-------KNLLPDWSS----NKNPCTFDGVTCR--DDKVT- 53

Query: 96  LLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGS 155
                                                S+DLS+      + +    +L S
Sbjct: 54  -------------------------------------SIDLSSKPLNVGF-SAVSSSLLS 75

Query: 156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGS-RTKQGLSKLKNLEALDLS 214
           L  L+ L L  ++ + S+        SLT+L L  N++ G   T   L     L+ L++S
Sbjct: 76  LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCL---NNMTRLKVLDISFNQLSGSF 271
           SN ++   +  G  +L +L VL+L  N+I           +    LK L IS N++SG  
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

Query: 272 PSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQL 331
              +S   +LE+L +  NNF    P   L + S L+                        
Sbjct: 195 D--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQ------------------------ 226

Query: 332 KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTG 391
                                   +LD+S N L G F    +   T+L++L +++N F G
Sbjct: 227 ------------------------HLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVG 261

Query: 392 NLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKE 451
              +P      L +L ++ N FTG++P  +      L  +D+S NHF G +         
Sbjct: 262 --PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLT-QLQYLYLENNK 510
           L  L LS NNFSGEL    L     L  L LS N F G +     NL+  L  L L +N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 511 FSGKI--EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
           FSG I           L EL + +N  +G IP  + N S L  L +S N+  G IP  L 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 569 NHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRD 627
           +  +L+   +  N L G +      + ++E L L  N L+G IP  L   +NL  + L +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 628 NGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT 687
           N  +G IP  I    NL  L L  N+  G IP ++     L  +DL+ N FNG+IP+   
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747
             +     N    +     +++   +        ++L+   + SE+    +      +  
Sbjct: 560 KQSGKIAANFIAGKR--YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 748 VTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFS 807
                +      N   M+ LD+S N L+G IP EIG +  + +LN+ HN +S SIP+   
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 808 NLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGN 867
           +L+ +  LDLS N+L G+IP  ++ L  L+  ++S NNLSG IP+ GQF TF  + +  N
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

Query: 868 LHLCGPTINKSCNGVEEIPATDSNREEGD 896
             LCG  + +      +  A         
Sbjct: 738 PGLCGYPLPRCDPSNADGYAHHQRSHHHH 766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  274 bits (703), Expect = 7e-81
 Identities = 128/591 (21%), Positives = 217/591 (36%), Gaps = 48/591 (8%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
            L  + F  + +L SLD+  N+   +      +    L  LK+LNL +N           
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFA 94

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
             T+LT L L  N+IQ  +      K KNL  LDLS N ++ S +     +L+NL  L L
Sbjct: 95  FCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLL 152

Query: 239 EKNNIEDHLPNCLNNM--TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
             N I+      L+    + LK L++S NQ+    P     +  L  L L +     +  
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 297 --LSSLANHSKLEVLLLSTRNNMLQVQTENF---LPTFQLKVLRLPNCSLNVIPPFLLHQ 351
             L     ++ +  L LS  N+ L   +      L    L +L L   +LNV+       
Sbjct: 213 EKLCLELANTSIRNLSLS--NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 352 FD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISS 410
              L+Y  L +N++   F    L     +  L L  +                    IS 
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRS---------------FTKQSISL 314

Query: 411 NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS-GELSAA 469
            +            L+ L +++M +N   G  ++    +  L++L LS +  S   L+  
Sbjct: 315 ASLPKIDDFSFQ-WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 470 LLTSCF--SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLV 526
              S     L  L L+ N         +  L  L+ L L  N+   ++     +  + + 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENYLS 584
           E+ +S N       +    +  L+ L++ +   +   + P      R L +  +S N ++
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 585 GFMTTSF-NISSVEHLYLQKNSLS--------GPIPIALFRSSNLLTLDLRDNGFSGVIP 635
                    +  +E L LQ N+L+        G     L   S+L  L+L  NGF  +  
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 636 HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCF 686
               +   L+ + L  NNL     +       L  ++L  N         F
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  272 bits (697), Expect = 5e-80
 Identities = 136/715 (19%), Positives = 232/715 (32%), Gaps = 92/715 (12%)

Query: 158 RLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNF 217
             ++ +  +        +  +  T++T L L  N ++        ++   L +LD+  N 
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNT 60

Query: 218 INGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN 277
           I+  LE +   +L  L VLNL+ N +           T L  L +  N +     +    
Sbjct: 61  ISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 278 LTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF--LPTFQLKVLR 335
             +L  L L  N       L +      L+ LLLS  N +  +++E         LK L 
Sbjct: 120 QKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLE 177

Query: 336 LPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTW--ALQNNTKLEVLLLTNNSFTG- 391
           L +  +    P   H    L  L L++  L  +          NT +  L L+N+  +  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 392 -NLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMK 450
            N      K   L  LD+S NN            L +L Y  +  N+ +   + S+  + 
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 451 ELRFLDLSKNNFSGELSAALLTS--------CFSLLWLGLSDNNFYGRIFPGYMNLTQLQ 502
            +R+L+L ++     +S A L             L  L + DN+  G     +  L  L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 503 YLYLENNKFSGKIEEGL----LKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF 558
           YL L N+  S +         L    L  L ++ N +S         L +LEVL +  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSS 618
               +  Q                          + ++  +YL  N        +     
Sbjct: 417 IGQELTGQEWR----------------------GLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 619 NLLTLDLRDNGFSGV--IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
           +L  L LR      V   P       NL  L L  NN+     + +  L  L ++DL HN
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP 736
                         ++ +  L    L  L     L+ N                      
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSH--LHIL----NLESN-------------GFDEIPVEV 555

Query: 737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN 796
           F                      +L  +  +DL  N L     S       +  LN+  N
Sbjct: 556 F---------------------KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 797 FLSESIPESFS-NLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLI 850
            ++    + F    + +  LD+  N            +N+++  + +   LS   
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  258 bits (660), Expect = 9e-75
 Identities = 130/668 (19%), Positives = 215/668 (32%), Gaps = 92/668 (13%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
           + E  D S   +        +    N+ VLNL  N +           ++L  LD+ FN 
Sbjct: 5   SHEVADCSHLKLTQV--PDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFL 326
           +S   P +   L  L+ L L  N         + A  + L  L L   N++ +++   F+
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLM-SNSIQKIKNNPFV 118

Query: 327 PTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFP-TWALQNNTKLEVLLL 384
               L  L L +  L+        Q  +L+ L LS+N +         +  N+ L+ L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 385 TNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ--KLLYMDMSNNHFEGNI 442
           ++N               L  L +++      L + + + L    +  + +SN+      
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 443 ASSIAEMK--ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ 500
            ++   +K   L  LDLS NN +  +          L +  L  NN           L  
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 501 LQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFE 560
           ++YL L+ +                 +  +S   L          L  LE L M  N   
Sbjct: 298 VRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 561 GNIPVQLLNHRRLQLFSVSENYLSGFMTT-----SFNISSVEHLYLQKNSLSGPIPIALF 615
           G           L+  S+S ++ S    T     S   S +  L L KN +S     A  
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 616 RSSNLLTLDLRDNGFSGVIPHQ-INECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLS 674
              +L  LDL  N     +  Q      N+  + L  N       N    +  L  + L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 675 HNKFNG--SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE 732
                   S PS F  +            L  L     L  N+I     + ++   L   
Sbjct: 463 RVALKNVDSSPSPFQPLR----------NLTIL----DLSNNNI-----ANINDDMLE-- 501

Query: 733 ERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT--------GEIPSEIGE 784
                                       L+ +  LDL  N L         G     +  
Sbjct: 502 ---------------------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 785 LQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN 844
           L  + +LN+  N   E   E F +L  ++ +DL  N L+            L + N+  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 845 NLSGLIPD 852
            ++ +   
Sbjct: 595 LITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (636), Expect = 2e-71
 Identities = 143/742 (19%), Positives = 242/742 (32%), Gaps = 116/742 (15%)

Query: 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILR 189
             +  D S+     V ++           + +LNL +N             + LT+L + 
Sbjct: 5   SHEVADCSHLKLTQVPDD-------LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 190 ENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPN 249
            N I      +   KL  L+ L+L  N ++  L  +      NL  L+L  N+I+    N
Sbjct: 58  FNTISKL-EPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 250 CLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVL 309
                  L  LD+S N LS +       L +L+ L L +N  +                 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA---------------- 159

Query: 310 LLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAF 368
                   L+ +  +      LK L L +  +    P   H    L  L L++  L  + 
Sbjct: 160 --------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 369 PTW--ALQNNTKLEVLLLTNNSFTG--NLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII 424
                    NT +  L L+N+  +   N      K   L  LD+S NN            
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-W 270

Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS--------CFS 476
           L +L Y  +  N+ +   + S+  +  +R+L+L ++     +S A L             
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL----LKSKKLVELRMSS 532
           L  L + DN+  G     +  L  L+YL L N+  S +         L    L  L ++ 
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 533 NMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL-NHRRLQLFSVSENYLSGFMTTSF 591
           N +S         L +LEVL +  N     +  Q       +    +S N        SF
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 592 -NISSVEHLYLQKNSLSG--PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLL 648
             + S++ L L++ +L      P       NL  LDL +N  + +    +     L  L 
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 649 LRGNNLE--------GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRY 700
           L+ NNL         G     +  L+ L +++L  N F+      F +            
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD------------ 558

Query: 701 RLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSN 760
               L  ++ +D+               L++     F                     +N
Sbjct: 559 ----LFELKIIDLGLN-----------NLNTLPASVF---------------------NN 582

Query: 761 LDYMVGLDLSCNKLTGEIPSEIGE-LQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819
              +  L+L  N +T       G   + +  L+M  N    +       +  I     + 
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642

Query: 820 NRLSGQI----PPKLTELNFLS 837
             LS       PP         
Sbjct: 643 PELSSHYLCNTPPHYHGFPVRL 664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  205 bits (524), Expect = 3e-56
 Identities = 96/550 (17%), Positives = 175/550 (31%), Gaps = 91/550 (16%)

Query: 328 TFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNN 387
           T   +V    +  L  +P  L    ++  L+L+HN L    P       ++L  L +  N
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 388 SFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA 447
           + +                 +                L  L  +++ +N        + A
Sbjct: 60  TISK----------------LEPELCQK---------LPMLKVLNLQHNELSQLSDKTFA 94

Query: 448 EMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLE 507
               L  L L  N+    +         +L+ L LS N          + L  LQ L L 
Sbjct: 95  FCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 508 NNKFSGKIEE--GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPV 565
           NNK      E   +  +  L +L +SSN +    P     +  L  L ++      ++  
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 566 QL---LNHRRLQLFSVSENYLSGFMTTSF---NISSVEHLYLQKNSLSGPIPIALFRSSN 619
           +L   L +  ++  S+S + LS    T+F     +++  L L  N+L+     +      
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN---------NLEGQIPNQICQLTGLGM 670
           L    L  N    +  H ++   N+R+L L+ +         +L          L  L  
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 671 MDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLS 730
           +++  N   G   + FT                 L  ++ L            L     S
Sbjct: 334 LNMEDNDIPGIKSNMFTG----------------LINLKYLS-----------LSNSFTS 366

Query: 731 SEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV 790
                  TF  L                S L     L+L+ NK++         L  + V
Sbjct: 367 LRTLTNETFVSL--------------AHSPLHI---LNLTKNKISKIESDAFSWLGHLEV 409

Query: 791 LNMSHNFLSESIP-ESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
           L++  N + + +  + +  L+ I  + LS+N+           +  L    +    L  +
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 850 IPDKGQFATF 859
                 F   
Sbjct: 470 DSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  161 bits (410), Expect = 2e-41
 Identities = 75/428 (17%), Positives = 131/428 (30%), Gaps = 65/428 (15%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK 510
                D S    + ++   L T+   +  L L+ N         +   +QL  L +  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 511 FSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH 570
            S    E   K   L  L +  N LS          + L  L +  N  +       +  
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 571 RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSG--PIPIALFRSSNLLTLDLRD 627
           + L    +S N LS     +   + +++ L L  N +       + +F +S+L  L+L  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 628 NGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC---QLTGLGMMDLSHNKFNGSIPS 684
           N      P   +    L  L L    L   +  ++C     T +  + LS+++ + +  +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 685 CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE 744
            F          L    L  L                  L    L+      F       
Sbjct: 241 TF--------LGLKWTNLTMLD-----------------LSYNNLNVVGNDSF------- 268

Query: 745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNF------- 797
                         + L  +    L  N +       +  L  +  LN+  +F       
Sbjct: 269 --------------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 798 --LSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQ 855
             L +    SF  LK +E L++  N + G      T L  L   ++S +  S        
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 856 FATFDESS 863
           F +   S 
Sbjct: 375 FVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 1e-23
 Identities = 49/203 (24%), Positives = 75/203 (36%), Gaps = 14/203 (6%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD--DSIFLY 176
            L    +   E +  + LS N +  +  N    +   +  L+ L L        DS    
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFI-------NGSLESQGICE 229
              L +LT L L  NNI        L  L+ LE LDL  N +       N       +  
Sbjct: 476 FQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 230 LKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
           L +L +LNLE N  ++       ++  LK++D+  N L+    S+ +N  SL+ L L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 290 NFEGTFPLSSLANHSKLEVLLLS 312
                           L  L + 
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 7e-18
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 23/178 (12%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL 177
           +  + S F P   L  LDLSNN+   +      D L  L++L+IL+L +N          
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHNN--------- 515

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
             L  L        +         L  L +L  L+L SN  +  +  +   +L  L +++
Sbjct: 516 --LARL------WKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIID 566

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIIS-NLTSLEYLALFDNNFEGT 294
           L  NN+     +  NN   LK L++  N ++     +      +L  L +  N F+ T
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 3e-14
 Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 52/214 (24%)

Query: 640 ECS-NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLD 698
           +C+ +          L  Q+P+ +   T + +++L+HN+      + FT           
Sbjct: 1   KCTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR---------- 47

Query: 699 RYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG 758
                  + +  LD           +    +S  E                         
Sbjct: 48  ------YSQLTSLD-----------VGFNTISKLEPELC--------------------- 69

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
             L  +  L+L  N+L+            +  L++  N + +     F   K + +LDLS
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
           HN LS        +L  L    +S N +  L  +
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 115 DMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIF 174
                  +        L  L+L +N F+ +      +    L  LKI++LG N  +    
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEI----PVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG 226
              N   SL +L L++N I     K      +NL  LD+  N  + + ES  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  254 bits (652), Expect = 2e-74
 Identities = 125/584 (21%), Positives = 216/584 (36%), Gaps = 36/584 (6%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
            ++LDLS N    +       +  S   L++L+L              +L+ L+TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED-HLPN 249
           N IQ        S L +L+ L      +   LE+  I  LK L  LN+  N I+   LP 
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 250 CLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL---FDNNFEGTFPLSSLANHSKL 306
             +N+T L+ LD+S N++   + + +  L  +  L L      N        +     +L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRL 202

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFL---------LHQFDLKYL 357
             L L    + L V          L+V RL                     L    ++  
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
            L++ D             T +    L + +         +      HL++ +  F    
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFP 320

Query: 418 PQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG-ELSAALLTSCFS 476
                + L+ L  +  ++N   G  A S  ++  L FLDLS+N  S     +       S
Sbjct: 321 T----LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNML 535
           L +L LS N     +   ++ L QL++L  +++      E  +  S + L+ L +S    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL-NHRRLQLFSVSENYLSGFMTTSF-NI 593
                     LS LEVL M+ N F+ N    +    R L    +S+  L     T+F ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINEC-SNLRFLLLRGN 652
           SS++ L +  N+            ++L  LD   N        ++    S+L FL L  N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 653 NLEGQIPNQ--ICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694
           +      +Q  +  +     + +   +   + PS    + + S+
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  253 bits (649), Expect = 6e-74
 Identities = 102/526 (19%), Positives = 168/526 (31%), Gaps = 29/526 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
            S   L L  N ++             L+ LDLS   I   +E      L +L  L L  
Sbjct: 28  FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I+       + ++ L+ L      L+      I +L +L+ L +  N  +        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKV----LRLPNCSLNVIPPFLLHQFDLKY 356
           +N + LE L LS  N +  +   +     Q+ +    L L    +N I P    +  L  
Sbjct: 146 SNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL--------HHLDI 408
           L L +N          +Q    LEV  L    F     L       L            +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSA 468
           +  ++      D+   L  +    + +   E       +     + L+L    F      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ---- 318

Query: 469 ALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK--FSGKIEEGLLKSKKLV 526
               +        L+  +  G      ++L  L++L L  N   F G   +    +  L 
Sbjct: 319 --FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSVSENYLSG 585
            L +S N +   +      L  LE L    +  +      +    R L    +S  +   
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 586 FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSN 643
                F  +SS+E L +  NS        +F    NL  LDL       + P   N  S+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI 689
           L+ L +  NN           L  L ++D S N    S      + 
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (600), Expect = 4e-67
 Identities = 124/641 (19%), Positives = 208/641 (32%), Gaps = 100/641 (15%)

Query: 227 ICELKNLFVLNLEKN--NIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL 284
           +  + N+    +E N   I D+LP         K LD+SFN L         +   L+ L
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 285 ALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI 344
            L     +      +  + S L  L+L+  N +  +    F     L+ L     +L  +
Sbjct: 58  DLSRCEIQTIED-GAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 345 PPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL 403
             F +     LK L+++HN +          N T LE L L++N       +       L
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVL 172

Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
           H + +                    L +D+S N        +  E++ L  L L  N  S
Sbjct: 173 HQMPLL------------------NLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS 213

Query: 464 GELSAALLTSCFSLLWLGLSDNNFYGRI---FPGYMNLTQLQYLYLENNKFS------GK 514
             +    +     L    L    F             L  L  L +E  + +        
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574
           I +       +    + S  +              + L +    F     ++L + +RL 
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS--GPIPIALFRSSNLLTLDLRDNGFSG 632
             S         +    ++ S+E L L +N LS  G    + F +++L  LDL  NG   
Sbjct: 332 FTSNKGGNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 633 VIPHQINECSNLRFLLLRGNNLEGQIPNQI-CQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
            +         L  L  + +NL+      +   L  L  +D+SH     +    F  ++ 
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS- 445

Query: 692 WSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN 751
                     LE L    ++  NS                E   P  F  L  + F    
Sbjct: 446 ---------SLEVL----KMAGNSF--------------QENFLPDIFTELRNLTF---- 474

Query: 752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM 811
                          LDLS  +L    P+    L  + VLNMSHN         +  L  
Sbjct: 475 ---------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 812 IESLDLSHNRLSGQIPPKLTEL-NFLSNFNVSYNNLSGLIP 851
           ++ LD S N +      +L    + L+  N++ N+ +    
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  183 bits (466), Expect = 4e-49
 Identities = 83/499 (16%), Positives = 156/499 (31%), Gaps = 48/499 (9%)

Query: 381 VLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG 440
                  +F    ++PD+      +LD+S N               +L  +D+S    + 
Sbjct: 11  TYQCMELNFY---KIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQT 66

Query: 441 NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQ 500
               +   +  L  L L+ N     L+    +   SL  L   + N          +L  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 501 LQYLYLENNKF-SGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLL----MS 555
           L+ L + +N   S K+ E       L  L +SSN +       +  L  + +L     +S
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSLSGPIPIA 613
            N     I        RL   ++  N+ S  +  +    ++ +E   L          + 
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 614 LFRSS---NLLTLDLRDN------GFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664
            F  S    L  L + +        +   I    N  +N+    L    +E         
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--Y 302

Query: 665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSML 724
             G   ++L + KF         ++   +  +           +  L+           L
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF----------L 352

Query: 725 DMG--QLSSEERGPFTFDYLVEVEF-------VTKNRYEVYNGSNLDYMVGLDLSCNKLT 775
           D+    LS +     +      +++       V            L++   LD   + L 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH---LDFQHSNLK 409

Query: 776 GEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK-LTEL 833
                 +   L+ +  L++SH     +    F+ L  +E L ++ N       P   TEL
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 834 NFLSNFNVSYNNLSGLIPD 852
             L+  ++S   L  L P 
Sbjct: 470 RNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (362), Expect = 8e-36
 Identities = 71/346 (20%), Positives = 120/346 (34%), Gaps = 29/346 (8%)

Query: 110 NYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF 169
              Y D  L   + LF+    + S  L + + E V +          + L+++N  +  F
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQF 319

Query: 170 DDSIFLYLNAL----------------TSLTTLILRENNIQGS-RTKQGLSKLKNLEALD 212
                  L  L                 SL  L L  N +       Q      +L+ LD
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLP-NCLNNMTRLKVLDISFNQLSGSF 271
           LS N +     S     L+ L  L+ + +N++     +   ++  L  LDIS      +F
Sbjct: 380 LSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 272 PSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQL 331
             I + L+SLE L +  N+F+  F          L  L LS +  + Q+    F     L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSL 496

Query: 332 KVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
           +VL + + +   +  F       L+ LD S N +  +         + L  L LT N F 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 391 GNLQLPD--DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMS 434
              +             L +         P D       +L ++++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ--GMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 7e-13
 Identities = 17/95 (17%), Positives = 34/95 (35%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
            +   +  LDLS  ++          L  +  L ++ N +      +FS L  ++ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853
              L+      +  L  L   NV++N +      +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  241 bits (616), Expect = 2e-69
 Identities = 108/542 (19%), Positives = 190/542 (35%), Gaps = 25/542 (4%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
               + L+ S N    +       T   L  L  L+L              +   L TL+
Sbjct: 32  PNSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L  N +     +  LS  K L+ L      I+ S++   +   K L  L L  N+I    
Sbjct: 88  LTANPLIFM-AETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL-FDNNFEGTFPLSSLANHSKL 306
                   +LKVLD   N +       +S+L     L+L  + N        +  +    
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFL---LHQFDLKYLDLSHND 363
            +    T+N ++  +         L +    +     I P +   L +  ++ ++L  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--KHDFLHHLDISSNNFTGKLPQDM 421
                 +      + L+ L LT    +   +LP        L  L +S+N F   L Q  
Sbjct: 266 FFN-ISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFEN-LCQIS 320

Query: 422 GIILQKLLYMDMSNNHFEGNI-ASSIAEMKELRFLDLSKNNFSG-ELSAALLTSCFSLLW 479
                 L ++ +  N     +    +  ++ LR LDLS ++    +     L +   L  
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGH 538
           L LS N         +    QL+ L L   +   K  +   ++   L  L +S ++L   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 539 IPHWMGNLSYLEVLLMSKNFFEGNIPVQ---LLNHRRLQLFSVSENYLSGFMTTSF-NIS 594
                  L  L+ L +  N F      +   L    RL++  +S   LS     +F ++ 
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 595 SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL 654
            + H+ L  N L+    I        + L+L  N  S ++P  +   S  R + LR N L
Sbjct: 501 MMNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 655 EG 656
           + 
Sbjct: 560 DC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (547), Expect = 6e-60
 Identities = 92/523 (17%), Positives = 155/523 (29%), Gaps = 40/523 (7%)

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239
             S   L    N +         S+L NL  LDL+   I   +          L  L L 
Sbjct: 32  PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLT 89

Query: 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSS 299
            N +       L+    LK L      +S      + N  +LE L L  N+      L  
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPK 148

Query: 300 LANHSKLEVLLLSTRNNMLQVQTENF--LPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357
                KL+VL     N +  +  E+   L       L L    +  I P        + L
Sbjct: 149 GFPTEKLKVLDFQ-NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 358 DLSHNDLDGAFPTWALQNN-TKLEVLLLTNNSFTG--NLQLPDDKHDFLHHLDISSNNFT 414
           +                +    L +    +                  +  +++  + F 
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474
             +  +       L  +D++  H    + S +  +  L+ L LS N F   L     ++ 
Sbjct: 268 N-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNF 324

Query: 475 FSLLWLGLSDNNFYGRIFPGYM-NLTQLQYLYLENNK--FSGKIEEGLLKSKKLVELRMS 531
            SL  L +  N     +  G + NL  L+ L L ++    S      L     L  L +S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 532 SNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF 591
            N               LE+L ++    +                               
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ---------------------- 422

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQIN---ECSNLRFLL 648
           N+  ++ L L  + L             L  L+L+ N F      + N       L  L+
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 649 LRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
           L   +L     +    L  +  +DLSHN+   S     +++  
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (514), Expect = 2e-55
 Identities = 121/623 (19%), Positives = 213/623 (34%), Gaps = 86/623 (13%)

Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
             N E   + + +P  L N    + L+ SFN L     +  S L +L +L L        
Sbjct: 16  TYNCENLGL-NEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-W 71

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-D 353
               +  +  +L+ L+L+  N ++ +          LK L      ++ I    LH    
Sbjct: 72  IHEDTFQSQHRLDTLVLT-ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
           L+ L L  N +             KL+VL   NN+      L  +    L          
Sbjct: 131 LESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY---LSKEDMSSLQQA------- 179

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL-LT 472
                          L ++++ N   G I     +    + L+         +   L  +
Sbjct: 180 -------------TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 473 SCFSLLWLGLSDNNFYG--RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM 530
           +  SL      D +           +    ++ + L+ + F             L EL +
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS 590
           ++  LS  +P  +  LS L+ L++S N FE    +   N   L   S+  N     + T 
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 591 F--NISSVEHLYLQKNSL--SGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRF 646
              N+ ++  L L  + +  S    + L   S+L +L+L  N    +      EC  L  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 647 LLLRGNNLEGQIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHL 705
           L L    L+ +   +    L  L +++LSH+  + S    F  +            L+HL
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP----------ALQHL 454

Query: 706 TFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV 765
                L  N             + + ++                           L  + 
Sbjct: 455 ----NLQGNHFP----------KGNIQKTNSL---------------------QTLGRLE 479

Query: 766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
            L LS   L+         L+ +  +++SHN L+ S  E+ S+LK I  L+L+ N +S  
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISII 538

Query: 826 IPPKLTELNFLSNFNVSYNNLSG 848
           +P  L  L+     N+  N L  
Sbjct: 539 LPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  198 bits (506), Expect = 2e-54
 Identities = 100/503 (19%), Positives = 184/503 (36%), Gaps = 21/503 (4%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
           F     L +L L+ N    + E      L   K LK L           F+ L+   +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL--FVLNLEKNN 242
           +L L  N+I            + L+ LD  +N I+  L  + +  L+      LNL  N+
Sbjct: 133 SLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGND 190

Query: 243 IEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN--LTSLEYLALFDNNFEGTFPLSSL 300
           I   +     +    + L+    Q        + N  + SL      D + E     +  
Sbjct: 191 IA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVF 248

Query: 301 ANHSKLEVLLLSTRNNMLQVQTEN-FLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDL 359
               ++ V  ++ + +     + N F     L+ L L    L+ +P  L+    LK L L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308

Query: 360 SHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKH-DFLHHLDISSNNFTGKLP 418
           S N  +      +  N   L  L +  N+    L     ++ + L  LD+S ++      
Sbjct: 309 SANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 419 QDMGII-LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL 477
            ++ +  L  L  +++S N        +  E  +L  LDL+      + + +   +   L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEE---GLLKSKKLVELRMSSNM 534
             L LS +         +  L  LQ+L L+ N F     +    L    +L  L +S   
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 535 LSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NI 593
           LS    H   +L  +  + +S N    +    L + + + L +++ N++S  + +    +
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPIL 546

Query: 594 SSVEHLYLQKNSLSGPIPIALFR 616
           S    + L++N L        F 
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYFL 569

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  177 bits (450), Expect = 6e-47
 Identities = 89/453 (19%), Positives = 168/453 (37%), Gaps = 42/453 (9%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY-FDDSIFLYL 177
           S+ +    P E+L+ LD  NN+   + +    + + SL++   L+L  N      I    
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSK----EDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 178 NALTSLTTLILRENNIQGSRTKQ-GLSKLKNLEALDLSSNFING-SLESQGICELKNLFV 235
                  +L            K    S +++L             S          ++  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           +NL+K+   +   N  +  + L+ LD++   LS   PS +  L++L+ L L  N FE   
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-L 316

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK 355
              S +N   L  L +   N                         L +    L +  +L+
Sbjct: 317 CQISASNFPSLTHLSIK-GNTKR----------------------LELGTGCLENLENLR 353

Query: 356 YLDLSHNDLDGA-FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF---LHHLDISSN 411
            LDLSH+D++ +      L+N + L+ L L+ N       L  +       L  LD++  
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEAFKECPQLELLDLAFT 410

Query: 412 NFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG--ELSAA 469
               K  Q     L  L  +++S++  + +       +  L+ L+L  N+F         
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 470 LLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR 529
            L +   L  L LS  +        + +L  + ++ L +N+ +       L   K + L 
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYLN 529

Query: 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGN 562
           ++SN +S  +P  +  LS    + + +N  +  
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (436), Expect = 4e-45
 Identities = 103/536 (19%), Positives = 170/536 (31%), Gaps = 71/536 (13%)

Query: 332 KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTG 391
           K     N  LN IP  L +    + L+ S N L              L  L LT      
Sbjct: 15  KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYW 71

Query: 392 NLQLPDD---KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE 448
              + +D       L  L +++N     + +      + L ++              +  
Sbjct: 72  ---IHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQ--YLYL 506
            K L  L L  N+ S  +          L  L   +N  +        +L Q     L L
Sbjct: 128 QKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGN--LSYLEVLLMSKNFFEGNIP 564
             N  +G IE G   S     L          I   + N  +  L +        E   P
Sbjct: 187 NGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 565 V--QLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLL 621
              + L    ++  ++ ++Y     + +F   S ++ L L    LS  +P  L   S L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLK 304

Query: 622 TLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI-PNQICQLTGLGMMDLSHNKFNG 680
            L L  N F  +     +   +L  L ++GN    ++    +  L  L  +DLSH+    
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 681 SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD 740
           S                    L +L+ ++ L+           L   +  S +   F   
Sbjct: 365 SDCCNLQ--------------LRNLSHLQSLN-----------LSYNEPLSLKTEAFK-- 397

Query: 741 YLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG-EIPSEIGELQEIPVLNMSHNFLS 799
                               L+    LDL+  +L   +  S    L  + VLN+SH+ L 
Sbjct: 398 ----------------ECPQLEL---LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN---FNVSYNNLSGLIPD 852
            S  + F  L  ++ L+L  N        K   L  L       +S+ +LS +   
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (373), Expect = 4e-37
 Identities = 75/356 (21%), Positives = 144/356 (40%), Gaps = 16/356 (4%)

Query: 116 MVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFL 175
           +++          + L      +   E +  + A         ++ +NL  +YF +    
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDI--SPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
             +  + L  L L   ++  S    GL  L  L+ L LS+N     L         +L  
Sbjct: 273 TFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTH 329

Query: 236 LNLEKNNIEDHL-PNCLNNMTRLKVLDISFNQLSGSFPSI--ISNLTSLEYLALFDNNFE 292
           L+++ N     L   CL N+  L+ LD+S + +  S      + NL+ L+ L L  N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 293 GTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN-FLPTFQLKVLRLPNCSLNVIPPFLLHQ 351
            +    +     +LE+L L+    +     ++ F     LKVL L +  L++    L   
Sbjct: 390 -SLKTEAFKECPQLELLDLA-FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 352 F-DLKYLDLSHNDLDG--AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDI 408
              L++L+L  N         T +LQ   +LE+L+L+    +   Q        ++H+D+
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG 464
           S N  T    + +     K +Y+++++NH    + S +  + + R ++L +N    
Sbjct: 508 SHNRLTSSSIEALS--HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (341), Expect = 5e-33
 Identities = 62/411 (15%), Positives = 122/411 (29%), Gaps = 58/411 (14%)

Query: 453 RFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
           +  +      + E+   L  S      L  S N         +  L  L +L L   +  
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 513 GKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR 572
              E+      +L  L +++N L       +     L+ L   +        + L N + 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 573 LQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIAL--FRSSNLLTLDLRDNG 629
           L+   +  N++S            ++ L  Q N++       +   + +  L+L+L  N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQI--CQLTGLGMMDLSHNKFNGSIPSCFT 687
            +G I     + +  + L   G      I   +    +  L +            P+ F 
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747
            +   SV +++                         L      +     F          
Sbjct: 250 GLCEMSVESIN-------------------------LQKHYFFNISSNTF---------- 274

Query: 748 VTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFS 807
                           +  LDL+   L+ E+PS +  L  +  L +S N        S S
Sbjct: 275 -----------HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 808 NLKMIESLDLSHNRLSGQIPPK-LTELNFLSNFNVSYNNLSGLIPDKGQFA 857
           N   +  L +  N    ++    L  L  L   ++S++++        Q  
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (304), Expect = 1e-28
 Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 18/272 (6%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN--YFDDSIFLY 176
           +L       F  L  L +  N+            L +L+ L+ L+L ++     D   L 
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNLQ 371

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
           L  L+ L +L L  N        +   +   LE LDL+   +           L  L VL
Sbjct: 372 LRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG---SFPSIISNLTSLEYLALFDNNFEG 293
           NL  + ++       + +  L+ L++  N          + +  L  LE L L   +   
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 294 TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF- 352
                +  +   +  + LS  +N L   +   L   +   L L +  +++I P LL    
Sbjct: 491 -IDQHAFTSLKMMNHVDLS--HNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547

Query: 353 DLKYLDLSHNDLDG-----AFPTWALQNNTKL 379
             + ++L  N LD       F  W  +N  KL
Sbjct: 548 QQRTINLRQNPLDCTCSNIYFLEWYKENMQKL 579

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 2e-16
 Identities = 40/265 (15%), Positives = 78/265 (29%), Gaps = 54/265 (20%)

Query: 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656
           +    +   L+  IP  L   ++   L+   N    +     +   NL FL L    +  
Sbjct: 15  KTYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716
              +       L  + L+ N       +  +              L+HL           
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK----------ALKHL----FFIQT-- 115

Query: 717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG 776
                       +SS +  P                       N   +  L L  N ++ 
Sbjct: 116 -----------GISSIDFIPL---------------------HNQKTLESLYLGSNHISS 143

Query: 777 EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIE--SLDLSHNRLSGQIPPKLTELN 834
               +    +++ VL+  +N +     E  S+L+     SL+L+ N ++G I P   +  
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSA 202

Query: 835 FLSNFNVSYNNLSGLIPDKGQFATF 859
              + N        +I    + +T 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTI 227

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  235 bits (601), Expect = 6e-67
 Identities = 92/621 (14%), Positives = 173/621 (27%), Gaps = 97/621 (15%)

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
           LN+  R+  L +     SG  P  I  LT LE LAL  +  +    L      S    + 
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN--MS 134

Query: 311 LSTRNNMLQVQTENFLPTFQ-LKVLRLPNCSLN------VIPPFLLHQFDLKYLDLSHND 363
              +  M     + F+          L    +N       I            +    N+
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI 423
           +       A+   TKL    + N+ F               + +                
Sbjct: 195 ITF-VSK-AVMRLTKLRQFYMGNSPFVAENICE-----AWENENSEYAQQYKTEDLKWD- 246

Query: 424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL-------LTSCFS 476
            L+ L  +++ N      + + +  + E++ ++++ N                       
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 477 LLWLGLSDNNF-YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML 535
           +  + +  NN     +      + +L  L    N+  GK+        KL  L ++ N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365

Query: 536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIP--VQLLNHRRLQLFSVSENYLSGFMTTSFNI 593
           +    ++ G    +E L  + N  +  IP      +   +     S N +      +F  
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF-- 422

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
                          P+    F+  N+ +++L +N  S       +  S L  + L GN 
Sbjct: 423 --------------DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 654 LEG-------QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLT 706
           L                    L  +DL  NK    +   F   TL  +  +D        
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID-------- 519

Query: 707 FVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVG 766
               L  NS   + +  L+   L                                     
Sbjct: 520 ----LSYNSFSKFPTQPLNSSTLKG-----------------------------FGIRNQ 546

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
            D   N+   E P  I     +  L +  N + +   +   N+     LD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISID 603

Query: 827 PPKLTELNFLSNFNVSYNNLS 847
              +        + + Y+   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (573), Expect = 3e-63
 Identities = 75/573 (13%), Positives = 169/573 (29%), Gaps = 75/573 (13%)

Query: 152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL 211
           +L S  R+  L+L        +   +  LT L  L L  +  + +    G   +    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 212 DL----SSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
           +       ++    ++     +  +L    +  +  +  +        +   +    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 268 SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLP 327
           +      +  LT L    + ++ F       +   +   E                    
Sbjct: 196 T-FVSKAVMRLTKLRQFYMGNSPFVAENICEAW-ENENSEYAQQ---------------- 237

Query: 328 TFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNN 387
                                 +  DL  +++ +       PT+ L+   +++++ +  N
Sbjct: 238 -------------YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN 283

Query: 388 SFTGNLQLPDDKHDF--------LHHLDISSNNFT-GKLPQDMGIILQKLLYMDMSNNHF 438
                 QL DD            +  + I  NN     +   +   ++KL  ++   N  
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQL 342

Query: 439 EGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG-RIFPGYMN 497
           EG +  +     +L  L+L+ N  +  + A        +  L  + N            +
Sbjct: 343 EGKL-PAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 498 LTQLQYLYLENNKFSG-------KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLE 550
           ++ +  +    N+           ++    K   +  + +S+N +S          S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 551 VLLMSKNFFEG-------NIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYL 601
            + +  N           +      N   L    +  N L+          +  +  + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 602 QKNSLSGPIPIALFRSSNLLTLDLRD------NGFSGVIPHQINECSNLRFLLLRGNNLE 655
             NS S   P     SS L    +R+      N      P  I  C +L  L +  N++ 
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 656 GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN 688
             +  +I     + ++D+  N       S    
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  222 bits (568), Expect = 2e-62
 Identities = 83/600 (13%), Positives = 176/600 (29%), Gaps = 98/600 (16%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF----DDSIFLYLNALTSLTTL 186
           +  L L      G    +  D +G L  L++L LG +             ++A  S    
Sbjct: 83  VTGLSLEGFGASG----RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 187 ILRENNIQGSRTKQ-GLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
                + Q +           +L    ++S+    S++            +    NNI  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNIT- 196

Query: 246 HLPNCLNNMTRLKVLDISFNQLSG-------------------SFPSIISNLTSLEYLAL 286
            +   +  +T+L+   +  +                       +      NL  L  + +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
           ++       P + L    +++++ ++  N  +  +                         
Sbjct: 257 YNCPNLTKLP-TFLKALPEMQLINVA-CNRGISGEQLKDDWQALADAPVGEK-------- 306

Query: 347 FLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTG------NLQLPDDKH 400
                  ++ + + +N+L       +LQ   KL +L    N   G      +        
Sbjct: 307 -------IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI------ 353

Query: 401 DFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIAS-SIAEMKELRFLDLSK 459
             L  L+++ N  T  +P +     +++  +  ++N  +          +  +  +D S 
Sbjct: 354 -KLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 460 NNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL 519
           N                       D   +  + P       +  + L NN+ S   +E  
Sbjct: 412 NEIGS------------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 520 LKSKKLVELRMSSNMLSG-------HIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHR 571
                L  + +  NML+               N   L  + +  N         +     
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 572 RLQLFSVSENYLSGFMTTSFNISSVEHLYLQ------KNSLSGPIPIALFRSSNLLTLDL 625
            L    +S N  S F T   N S+++   ++       N      P  +    +L  L +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
             N     +  +I    N+  L ++ N       + +C     GM  L ++K    I  C
Sbjct: 574 GSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK-TQDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (515), Expect = 2e-55
 Identities = 83/606 (13%), Positives = 181/606 (29%), Gaps = 73/606 (12%)

Query: 229 ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG----SFPSIISNLTSLEYL 284
               +  L+LE       +P+ +  +T L+VL +  +          P  IS   S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 285 ALFDNNFEGTFP-LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNV 343
                +++ TF       + S L    +++      ++  + +   +   +   + ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF 197

Query: 344 IPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL 403
           +   ++    L+   + ++                 E              L  D    L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHF--------EGNIASSIAEMKELRFL 455
             +++ +     KLP  +   L ++  ++++ N          +    +     ++++ +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI 515
            +  NN         L     L  L    N   G   P + +  +L  L L  N+ +   
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIP 369

Query: 516 EEGLLKSKKLVELRMSSNMLSGHIPHW--MGNLSYLEVLLMSKNFFEGNIPVQLLNHRRL 573
                 ++++  L  + N L   IP+     ++S +  +  S N                
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG--------- 419

Query: 574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV 633
                          T F   +V  + L  N +S          S L +++L  N  + +
Sbjct: 420 -------KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 634 -------IPHQINECSNLRFLLLRGNNLEGQIPNQI--CQLTGLGMMDLSHNKFNGSIPS 684
                            L  + LR N L   + +      L  L  +DLS+N F+   P+
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 685 CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE 744
              N +           L+      + D             +    S          L +
Sbjct: 531 QPLNSS----------TLKGFGIRNQRDAQGNRTLREWPEGITLCPS----------LTQ 570

Query: 745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPE 804
           +  +  N     N      +  LD+  N       S +    E  +  + ++   +    
Sbjct: 571 L-QIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629

Query: 805 SFSNLK 810
              ++K
Sbjct: 630 DALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  201 bits (513), Expect = 4e-55
 Identities = 77/547 (14%), Positives = 161/547 (29%), Gaps = 92/547 (16%)

Query: 330 QLKVLRLPNCSLN-VIPPFLLHQFDLKYLDLSHNDLDGAFPTW---ALQNNTKLEVLLLT 385
           ++  L L     +  +P  +    +L+ L L  +        +    +  N   E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 386 NNSFTGNL--QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
              +        P +    L    I+S+     + +   I   K   +   +N+    ++
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-TLKDTQIGQLSNNITF-VS 199

Query: 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503
            ++  + +LR   +  + F  E        C +           Y      + NL  L  
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563
           + + N     K+   L    ++  + ++ N                      +   +   
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS----------------GEQLKDDWQA 297

Query: 564 PVQLLNHRRLQLFSVSENYL-SGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLL 621
                   ++Q+  +  N L +  + TS   +  +  L    N L G +P A      L 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356

Query: 622 TLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN--QICQLTGLGMMDLSHNKFN 679
           +L+L  N  + +  +       +  L    N L+  IPN      ++ +  +D S+N+  
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 680 GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739
                 F  +                  V  ++           L   Q+S   +  F+ 
Sbjct: 416 SVDGKNFDPLDPT---------PFKGINVSSIN-----------LSNNQISKFPKELFS- 454

Query: 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG-------EIPSEIGELQEIPVLN 792
                             GS L     ++L  N LT        +          +  ++
Sbjct: 455 -----------------TGSPLSS---INLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 793 MSHNFLSESIPE-SFSNLKMIESLDLSHNRLSGQIPP------KLTELNFLSNFNVSYNN 845
           +  N L++   +   + L  +  +DLS+N  S   P        L      +  +   N 
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 846 LSGLIPD 852
                P+
Sbjct: 554 TLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (445), Expect = 3e-46
 Identities = 73/516 (14%), Positives = 155/516 (30%), Gaps = 96/516 (18%)

Query: 360 SHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--KHDFLHHLDISSNNFTG-- 415
              D+ GA P  +L +N ++  L L     +G  ++PD   +   L  L + S+      
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASG--RVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 416 --KLPQDMGIILQKLLYMDMSNNHFEGNIASSIA--EMKELRFLDLSKNNFSGELSAALL 471
               P+ +               H++          +  +L    ++ +     +     
Sbjct: 122 RLFGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SS 179

Query: 472 TSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMS 531
                   +G   NN    +    M LT+L+  Y+ N+ F  +      +++        
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----E 233

Query: 532 SNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF 591
                        NL  L  + +        +P  L     +QL +V+ N          
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS------ 287

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGF-SGVIPHQINECSNLRFLLLR 650
                     ++                +  + +  N   +  +   + +   L  L   
Sbjct: 288 ---------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 651 GNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVER 710
            N LEG++P        L  ++L++N+      +                ++E+L     
Sbjct: 339 YNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTE----------QVENL----S 383

Query: 711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLS 770
              N +  Y  ++ D   +S                                 M  +D S
Sbjct: 384 FAHNKLK-YIPNIFDAKSVSV--------------------------------MSAIDFS 410

Query: 771 CNKLTG-------EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823
            N++          +     +   +  +N+S+N +S+   E FS    + S++L  N L+
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 824 G-------QIPPKLTELNFLSNFNVSYNNLSGLIPD 852
                              L++ ++ +N L+ L  D
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  153 bits (388), Expect = 7e-39
 Identities = 47/463 (10%), Positives = 134/463 (28%), Gaps = 96/463 (20%)

Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL---LTSCFSLLWLG 481
             ++  + +      G +  +I ++ EL  L L  +             +++  S     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 482 LSDNNFYGRIFP--GYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHI 539
               ++           + + L    + ++     I++    + K  ++   SN ++  +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 540 PHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHL 599
              +  L+ L    M  + F      +   +   +                         
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY------------------------ 234

Query: 600 YLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL----- 654
                       +      +L  +++ +      +P  +     ++ + +  N       
Sbjct: 235 ----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 655 ---EGQIPNQICQLTGLGMMDLSHNKF-NGSIPSCFTNITLWSVGNLDRYRLEHLTFVER 710
              + Q          + ++ + +N      + +        S+  + +  L  L     
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET--------SLQKMKK--LGML----E 336

Query: 711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN---------GSNL 761
              N +      +   G              L  +          YN             
Sbjct: 337 CLYNQL---EGKLPAFGSEIK----------LASLNLA-------YNQITEIPANFCGFT 376

Query: 762 DYMVGLDLSCNKLTGEIPS--EIGELQEIPVLNMSHNFLS-------ESIPESFSNLKMI 812
           + +  L  + NKL   IP+  +   +  +  ++ S+N +        + +  +      +
Sbjct: 377 EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 813 ESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQ 855
            S++LS+N++S       +  + LS+ N+  N L+ +  +  +
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (254), Expect = 2e-22
 Identities = 30/270 (11%), Positives = 70/270 (25%), Gaps = 32/270 (11%)

Query: 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ----IP 659
           +       ++L  +  +  L L   G SG +P  I + + L  L L  +  +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIY 719
             I               +  +            +             +++    ++   
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 720 YSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779
               L    ++            V                 L  +    +  +    E  
Sbjct: 187 QIGQLS-NNITF-----------VSKAV-----------MRLTKLRQFYMGNSPFVAENI 223

Query: 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNF 839
            E  E       N  +    ++    + NLK +  +++ +     ++P  L  L  +   
Sbjct: 224 CEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 840 NVSYNNLSGLIPDKGQFATFDESSYRGNLH 869
           NV+ N        K  +    ++     + 
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQ 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  229 bits (585), Expect = 4e-65
 Identities = 97/527 (18%), Positives = 164/527 (31%), Gaps = 30/527 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           +S   + L  N ++        S    L+ LDLS   I  ++E +    L +L  L L  
Sbjct: 32  SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTG 89

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I+   P   + +T L+ L     +L+      I  L +L+ L +  N        +  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLP----TFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
           +N + L  + LS  N +  +   +             L +    ++ I         L  
Sbjct: 150 SNLTNLVHVDLS-YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLH--------HLDI 408
           L L  N          LQN   L V  L    F     L   +   +            +
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSA 468
           +  N            L  +  M ++           + +  + + L + +     +   
Sbjct: 269 TYTNDFSDDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPT 324

Query: 469 ALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEE--GLLKSKKLV 526
             L     L  L L+ N   G I    + L  L YL L  N  S         L +  L 
Sbjct: 325 LDLPF---LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL-NHRRLQLFSVSENYLSG 585
            L +S N     +      L  L+ L    +  +         +  +L    +S      
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 586 FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSN 643
                F  ++S+  L +  NS        +F + +NL  LDL       +     +    
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT 690
           L+ L +  NNL     +   QL  L  +D S N+   S         
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (564), Expect = 3e-62
 Identities = 114/569 (20%), Positives = 181/569 (31%), Gaps = 58/569 (10%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
               +++DLS N  + +       +  +   L+ L+L     +       + L  L+ LI
Sbjct: 31  PSSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED-H 246
           L  N IQ   +    S L +LE L      +  SLES  I +L  L  LN+  N I    
Sbjct: 87  LTGNPIQSF-SPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL---FDNNFEGTFPLSSLANH 303
           LP   +N+T L  +D+S+N +     + +  L     + L      N        +    
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG- 203

Query: 304 SKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF---------LLHQFDL 354
            KL  L L    N   +          L V RL                     L    +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF-LHHLDISSNNF 413
               L++ +               +  + L   S      L D    F    L I     
Sbjct: 264 DEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQL 319

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL-LT 472
                 D    L  L  + ++ N   G+I+     +  L +LDLS+N  S     +    
Sbjct: 320 KQFPTLD----LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 473 SCFSLLWLGLSDNNFYGRIFPGY-MNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRM 530
              SL  L LS N     I     M L +LQ+L  +++      E     S +KL+ L +
Sbjct: 374 GTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS 590
           S              L+ L  L M+ N F+ N    +                       
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--------------------- 470

Query: 591 FNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLR 650
            N +++  L L K  L             L  L++  N    +     N+  +L  L   
Sbjct: 471 -NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 651 GNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
            N +E            L   +L++N   
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (468), Expect = 2e-49
 Identities = 84/457 (18%), Positives = 155/457 (33%), Gaps = 33/457 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIFL 175
           SL          L+ L++++N               +L  L  ++L YNY      +   
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 176 YLNALT-SLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF 234
           +L        +L +  N I     +    +   L  L L  NF + ++    +  L  L 
Sbjct: 175 FLRENPQVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 235 VLNLEKN------NIEDHLPNCLNNMTRLKV--LDISFNQLSGSFPSIISNLTSLEYLAL 286
           V  L         N+E   P+ +  +  + +    +++             L ++  ++L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
              + +    L  +  H K + L +      L+      LP   LK L L     ++   
Sbjct: 293 AGVSIKY---LEDVPKHFKWQSLSII--RCQLKQFPTLDLP--FLKSLTLTMNKGSISFK 345

Query: 347 FLLHQFDLKYLDLSHNDLDGAFP-TWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF--L 403
            +     L YLDLS N L  +   +++      L  L L+ N       +  +      L
Sbjct: 346 KVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII---MSANFMGLEEL 401

Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
            HLD   +           + L+KLLY+D+S  + + +       +  L  L ++ N+F 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 464 GELSAALLTSCFSLLWLGLSDNNFYGRIFPGY-MNLTQLQYLYLENNKFSGKIEEGLLKS 522
               + +  +  +L +L LS       I  G    L +LQ L + +N           + 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFF 559
             L  L  S N +             L    ++ N  
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (453), Expect = 2e-47
 Identities = 107/631 (16%), Positives = 189/631 (29%), Gaps = 104/631 (16%)

Query: 227 ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
           I  + N+         +   +P+ +   +  K +D+SFN L        SN + L++L L
Sbjct: 8   IEVVPNI-TYQCMDQKL-SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
                E      +      L  L+L+  N +      +F     L+ L      L  +  
Sbjct: 64  SRCEIETIED-KAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 347 FLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHH 405
           F + Q   LK L+++HN +          N T L  + L+ N       +  +   FL  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRE 178

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
                                  L +DMS N  +  I     +  +L  L L  N  S  
Sbjct: 179 NPQV------------------NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSN 219

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525
           +    L +   L    L    F         NL   +   +E            L    +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDER-----NLEIFEPSIMEG-----------LCDVTI 263

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585
            E R++              L+ +  + ++           +  H + Q  S+    L  
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 586 FMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPH--QINECSN 643
           F   + ++  ++ L L  N  S           +L  LDL  N  S            ++
Sbjct: 322 F--PTLDLPFLKSLTLTMNKGSISFKKVAL--PSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP-SCFTNITLWSVGNLDRYRL 702
           LR L L  N     +      L  L  +D  H+        S F ++           +L
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE----------KL 426

Query: 703 EHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762
            +L     +   +  I +  +                                     L 
Sbjct: 427 LYL----DISYTNTKIDFDGIFL----------------------------------GLT 448

Query: 763 YMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR 821
            +  L ++ N       S +      +  L++S   L +     F  L  ++ L++SHN 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 822 LSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
           L         +L  LS  + S+N +      
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  131 bits (332), Expect = 6e-32
 Identities = 57/301 (18%), Positives = 102/301 (33%), Gaps = 20/301 (6%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL 177
            S ++  FH    + ++ L+  S + +      + +    + + L++             
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYL------EDVPKHFKWQSLSIIRCQLKQFPT--- 324

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFING-SLESQGICELKNLFVL 236
             L  L +L L  N    S  K  L    +L  LDLS N ++     S       +L  L
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALP---SLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALFDNNFEGTF 295
           +L  N     +      +  L+ LD   + L      S   +L  L YL +   N +  F
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF-QLKVLRLPNCSLNVIPPFLLHQFD- 353
                   + L  L ++  N+       N       L  L L  C L  I   +      
Sbjct: 441 D-GIFLGLTSLNTLKMA-GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
           L+ L++SHN+L     +        L  L  + N    +  +       L   ++++N+ 
Sbjct: 499 LQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 414 T 414
            
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (317), Expect = 3e-30
 Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 19/271 (7%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN--YFDDSIFL 175
             L          L+SL L+ N     +         +L  L  L+L  N   F      
Sbjct: 317 CQLKQFPTLDLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
                 SL  L L  N             L+ L+ LD   + +    E      L+ L  
Sbjct: 371 SDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPS-IISNLTSLEYLALFDNNFEGT 294
           L++   N +         +T L  L ++ N    +  S + +N T+L +L L     E  
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ- 487

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD- 353
                     +L++L +S  NN+L + + ++   + L  L      +      L H    
Sbjct: 488 ISWGVFDTLHRLQLLNMS-HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 354 LKYLDLSHNDLD-----GAFPTWALQNNTKL 379
           L + +L++N +        F  W  +    L
Sbjct: 547 LAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 22/95 (23%), Positives = 38/95 (40%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
           SN   +  LDLS  ++          L  +  L ++ N +    P SFS L  +E+L   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853
             +L+      + +L  L   NV++N +       
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (543), Expect = 2e-62
 Identities = 83/322 (25%), Positives = 128/322 (39%), Gaps = 53/322 (16%)

Query: 555 SKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS---FNISSVEHLYLQK-NSLSGPI 610
               + G +        R+    +S   L           N+  +  LY+   N+L GPI
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 611 PIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGM 670
           P A+ + + L  L +     SG IP  +++   L  L    N L G +P  I  L  L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 671 MDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLS 730
           +    N+ +G+IP         S G+        L     +  N +          G++ 
Sbjct: 154 ITFDGNRISGAIPD--------SYGSF-----SKLFTSMTISRNRLT---------GKI- 190

Query: 731 SEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV 790
                P TF                   +NL+ +  +DLS N L G+     G  +    
Sbjct: 191 -----PPTF-------------------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 791 LNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLI 850
           ++++ N L+  +       K +  LDL +NR+ G +P  LT+L FL + NVS+NNL G I
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 851 PDKGQFATFDESSYRGNLHLCG 872
           P  G    FD S+Y  N  LCG
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (473), Expect = 9e-53
 Identities = 73/270 (27%), Positives = 115/270 (42%), Gaps = 6/270 (2%)

Query: 432 DMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS-AALLTSCFSLLWLGLSD-NNFYG 489
           D  N  + G +  +  +   +  LDLS  N        + L +   L +L +   NN  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYL 549
            I P    LTQL YLY+ +   SG I + L + K LV L  S N LSG +P  + +L  L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 550 EVLLMSKNFFEGNIPVQLLNHRRL-QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
             +    N   G IP    +  +L    ++S N L+G +  +F   ++  + L +N L G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668
              +      N   + L  N  +  +  ++    NL  L LR N + G +P  + QL  L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 669 GMMDLSHNKFNGSIPS--CFTNITLWSVGN 696
             +++S N   G IP         + +  N
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (447), Expect = 4e-49
 Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 37/303 (12%)

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--KHDFLHHLDISS-NNF 413
            D  +    G           ++  L L+  +      +P       +L+ L I   NN 
Sbjct: 31  TDCCNRTWLGVLCD-TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
            G +P  +   L +L Y+ +++ +  G I   ++++K L  LD S N  SG L  ++ +S
Sbjct: 90  VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SS 147

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQL-QYLYLENNKFSGKI--EEGLLKSKKLVELRM 530
             +L+ +    N   G I   Y + ++L   + +  N+ +GKI      L    L  + +
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDL 204

Query: 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS 590
           S NML G      G+    + + ++KN    ++              V            
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG------------KVG----------- 241

Query: 591 FNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLR 650
               ++  L L+ N + G +P  L +   L +L++  N   G IP Q             
Sbjct: 242 -LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

Query: 651 GNN 653
            N 
Sbjct: 300 NNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (411), Expect = 3e-44
 Identities = 78/305 (25%), Positives = 115/305 (37%), Gaps = 41/305 (13%)

Query: 260 LDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS-SLANHSKLEVLLLSTRNNML 318
            D       G      +    +  L L   N    +P+  SLAN   L  L +   NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-- 88

Query: 319 QVQTENFLPTFQLKVLRLPNCSLN-VIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNT 377
                                 L   IPP +     L YL ++H ++ GA P + L    
Sbjct: 89  ----------------------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIK 125

Query: 378 KLEVLLLTNNSFTGNL-----QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
            L  L  + N+ +G L      LP+     L  +    N  +G +P   G   +    M 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPN-----LVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 433 MSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIF 492
           +S N   G I  + A +  L F+DLS+N   G+ S  L  S  +   + L+ N+    + 
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDL- 237

Query: 493 PGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVL 552
                   L  L L NN+  G + +GL + K L  L +S N L G IP   GNL   +V 
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296

Query: 553 LMSKN 557
             + N
Sbjct: 297 AYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (389), Expect = 2e-41
 Identities = 74/333 (22%), Positives = 107/333 (32%), Gaps = 81/333 (24%)

Query: 180 LTSLTTLILRENNIQGSRT-KQGLSKLKNLEALDLSS-NFINGSLESQGICELKNLFVLN 237
              +  L L   N+         L+ L  L  L +   N + G +    I +L  L  L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLY 107

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPL 297
           +   N+   +P+ L+ +  L  LD S+N LSG+ P  IS+L +L  +    N   G  P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP- 166

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357
            S  + SKL                                                  +
Sbjct: 167 DSYGSFSKL-----------------------------------------------FTSM 179

Query: 358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
            +S N L G  P                  +F  NL         L  +D+S N   G  
Sbjct: 180 TISRNRLTGKIPP-----------------TF-ANLN--------LAFVDLSRNMLEGDA 213

Query: 418 PQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL 477
               G   +    + ++ N    ++   +   K L  LDL  N   G L    LT    L
Sbjct: 214 SVLFG-SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFL 270

Query: 478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK 510
             L +S NN  G I P   NL +       NNK
Sbjct: 271 HSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (373), Expect = 3e-39
 Identities = 75/366 (20%), Positives = 128/366 (34%), Gaps = 64/366 (17%)

Query: 37  CLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCN--WKGVRCNATT--GR 92
           C   ++ AL +IK               L++W+     ++DCCN  W GV C+  T   R
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP----TTDCCNRTWLGVLCDTDTQTYR 51

Query: 93  VIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSN-NSFEGVYENQAYD 151
           V  L L         S         +  +++       L  L +   N+  G        
Sbjct: 52  VNNLDL---------SGLNLPKPYPIPSSLANLP---YLNFLYIGGINNLVGPIP----P 95

Query: 152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL 211
            +  L +L  L + +     +I  +L+ + +L TL    N + G+     +S L NL  +
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGI 154

Query: 212 DLSSNFINGSLESQGICELKNLF-VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGS 270
               N I+G++          LF  + + +N +   +P    N+  L  +D+S N L G 
Sbjct: 155 TFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212

Query: 271 FPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQ 330
              +  +  + + + L  N+         +     L  L L   NN +            
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLR--NNRIY----------- 257

Query: 331 LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
                        +P  L     L  L++S N+L G  P     N  + +V    NN   
Sbjct: 258 -----------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCL 304

Query: 391 GNLQLP 396
               LP
Sbjct: 305 CGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (314), Expect = 2e-31
 Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 53/240 (22%)

Query: 617 SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ--IPNQICQLTGLGMMDLS 674
           SS L T D  +  + GV+     +   +  L L G NL     IP+ +  L  L  + + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 675 H-NKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733
             N   G IP     +T          +L +L     +   ++          G +    
Sbjct: 85  GINNLVGPIPPAIAKLT----------QLHYL----YITHTNVS---------GAI---- 117

Query: 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNM 793
             P     +                  L     LD S N L+G +P  I  L  +  +  
Sbjct: 118 --PDFLSQI----------------KTLVT---LDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 794 SHNFLSESIPESFSNL-KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
             N +S +IP+S+ +  K+  S+ +S NRL+G+IPP    LN L+  ++S N L G    
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 33/169 (19%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
             S+ +S N   G    +   T  +L  L  ++L  N  +    +   +  +   + L +
Sbjct: 176 FTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
           N++     K  +   KNL  LDL +N I G+                         LP  
Sbjct: 231 NSLAFDLGK--VGLSKNLNGLDLRNNRIYGT-------------------------LPQG 263

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSS 299
           L  +  L  L++SFN L G  P    NL   +  A  +N      PL +
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  207 bits (528), Expect = 6e-56
 Identities = 108/732 (14%), Positives = 205/732 (28%), Gaps = 128/732 (17%)

Query: 143 GVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGL 202
           G Y+  AY T       +      +   +S  +  N LT    + ++         K   
Sbjct: 214 GTYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYI-KDYK 272

Query: 203 SKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI 262
           +     EALD  +        +  I      +  N E +   D     L+N  R+  L +
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTI--HSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSL 330

Query: 263 SFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQT 322
           +     G  P  I  LT L+ L+   ++   +  L      +         R        
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI------- 383

Query: 323 ENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVL 382
                             ++    FL +   L   DL  + ++       ++ ++++ + 
Sbjct: 384 -----------------RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 383 LLTNNSFTGNLQ-LPDD--KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE 439
                + T  +  +     +   L  +  +++ FT         I       +       
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQY 480

Query: 440 GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG---------R 490
            N   S + +K+L  ++L       +L   L      L  L ++ N             R
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 491 IFPGYMNLTQLQYLYLENNKFSG-KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYL 549
           +        ++Q  Y+  N          L K  KL  L    N +  H+    G    L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKL 597

Query: 550 EVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG- 608
             L +  N  E  IP                               VE L    N L   
Sbjct: 598 TDLKLDYNQIE-EIPEDFCA----------------------FTDQVEGLGFSHNKLKYI 634

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPH-----QINECSNLRFLLLRGNNLEGQIPNQIC 663
           P          + ++D   N       +        +  N   + L  N ++        
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 664 QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM 723
             + +  + LS+N    SIP         +  N   Y L  +     L  N +       
Sbjct: 695 TGSPISTIILSNNLM-TSIPENSLKPKDGNYKNT--YLLTTI----DLRFNKLT------ 741

Query: 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG 783
                LS +                       +  + L Y+  +D+S N  +   P++  
Sbjct: 742 ----SLSDD-----------------------FRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 784 ELQEIPVLNMSH------NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS 837
              ++    + H      N +    P   +    +  L +  N +   +  KL     L 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLY 830

Query: 838 NFNVSYNNLSGL 849
             +++ N    +
Sbjct: 831 ILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  203 bits (519), Expect = 9e-55
 Identities = 81/582 (13%), Positives = 167/582 (28%), Gaps = 76/582 (13%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
                EL+ L    +S               L         +        ++L+    L 
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRL---FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES--QGICELKNLFVLNLEKNN 242
              L ++ I  +   + + K   +   D     +   +    + I  L  L ++    + 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 243 IEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLAN 302
                    N     +  +  + +   +     SNL  L  + L++       P   L +
Sbjct: 460 F-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYD 513

Query: 303 HSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN 362
             +L+ L ++   N             +             +         ++   + +N
Sbjct: 514 LPELQSLNIA--CN-------------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 363 DLDGAFPTWALQNNTKLEVLLLTNNSFT-----GNLQLPDDKHDFLHHLDISSNNFTGKL 417
           +L+    + +LQ   KL +L   +N        G           L  L +  N     +
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK-------LTDLKLDYNQIEE-I 610

Query: 418 PQDMGIILQKLLYMDMSNNHFEGN-IASSIAEMKELRFLDLSKNNFSGELSAAL----LT 472
           P+D      ++  +  S+N  +      +   +  +  +D S N    E           
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS-------GKIEEGLLKSKKL 525
              +   + LS N         +   + +  + L NN  +          +     +  L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 526 VELRMSSNMLSGHIP--HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL 583
             + +  N L+  +        L YL  + +S N F    P Q LN  +L+ F +     
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ-- 786

Query: 584 SGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSN 643
                             + N +    P  +    +L+ L +  N     +  ++     
Sbjct: 787 ---------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQ 828

Query: 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
           L  L +  N         +C     GM  L ++K    I  C
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK-TQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  139 bits (351), Expect = 8e-34
 Identities = 61/519 (11%), Positives = 152/519 (29%), Gaps = 69/519 (13%)

Query: 353 DLKYLDLSHNDLDGAFP---------TWALQNNTKLEVLLLTNNSFTG-NLQLPDDKHDF 402
           + KY+D+     D A            +   + + ++   L   S  G +  + D+K   
Sbjct: 194 NDKYMDIGVATCDSAVWLPAGTYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTK 253

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
             ++ I        +  D   +      +D  N  +     ++        F    + + 
Sbjct: 254 DANVPIQLKETAEYIK-DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFN--KELDM 310

Query: 463 SGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
            G+     L +   +  L L+     GR+      LT+L+ L    +  +        + 
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

Query: 523 KKLVELRMSSNMLSGHIPH-WMGNLSYLEVLLMSKNFFEGN---IPVQLLNHRRLQL--F 576
                     + +  H    ++     L +  + ++    N    P++  +   L+    
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 577 SVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPH 636
               N ++        ++ ++ +Y   +  +         + +    +            
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEEL 485

Query: 637 QINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITL-WSVG 695
             +   +L  + L       Q+P+ +  L  L  ++++ N+   +         L     
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 696 NLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV 755
                +++       +  N++            L                          
Sbjct: 546 TG--PKIQIF----YMGYNNL----EEFPASASLQ------------------------- 570

Query: 756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESL 815
                +  +  LD   NK+        G   ++  L + +N + E   +  +    +E L
Sbjct: 571 ----KMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 816 DLSHNRLSGQIPPK--LTELNFLSNFNVSYNNLSGLIPD 852
             SHN+L   IP       +  + + + SYN +     +
Sbjct: 625 GFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.9 bits (241), Expect = 1e-20
 Identities = 38/241 (15%), Positives = 81/241 (33%), Gaps = 12/241 (4%)

Query: 628 NGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT 687
           + +       ++    +  L L G   +G++P+ I QLT L ++    +    S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747
                 +    ++R+        LD +   +  S +L      + E  P   D  + ++ 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQR-LNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 748 VTKNRYEVYNGS------NLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSES 801
                              L  +  +  + +  T +  +   E       N  +    E+
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYEN 482

Query: 802 IPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDE 861
              S+SNLK +  ++L +     Q+P  L +L  L + N++ N        K  +    +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 862 S 862
            
Sbjct: 543 D 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  185 bits (471), Expect = 4e-50
 Identities = 105/521 (20%), Positives = 173/521 (33%), Gaps = 29/521 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
            S   L L  N ++             L+ LDLS   I  ++E      L +L  L L  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I+       + ++ L+ L      L+      I +L +L+ L +  N  +        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKV----LRLPNCSLNVIPPFLLHQFDLKY 356
           +N + LE L LS  N +  +   +     Q+ +    L L    +N I P    +  L  
Sbjct: 146 SNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL--------HHLDI 408
           L L +N          +Q    LEV  L    F     L       L            +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSA 468
           +  ++      D+   L  +    + +           +     + L+L    F    + 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 469 ALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK--FSGKIEEGLLKSKKLV 526
            L     SL  L  + N          ++L  L++L L  N   F G   +    +  L 
Sbjct: 323 KLK----SLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSVSENYLSG 585
            L +S N +   +      L  LE L    +  +      +    R L    +S  +   
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 586 FMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSN 643
                F  +SS+E L +  NS        +F    NL  LDL       + P   N  S+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
           L+ L +  N L+        +LT L  + L  N ++ S P 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  183 bits (466), Expect = 2e-49
 Identities = 123/538 (22%), Positives = 206/538 (38%), Gaps = 42/538 (7%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
               ++LDLS N    +       +  S   L++L+L              +L+ L+TLI
Sbjct: 27  PFSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED-H 246
           L  N IQ S      S L +L+ L      +  SLE+  I  LK L  LN+  N I+   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL---FDNNFEGTFPLSSLANH 303
           LP   +N+T L+ LD+S N++   + + +  L  +  L L      N        +    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE- 199

Query: 304 SKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFL---------LHQFDL 354
            +L  L L    + L V          L+V RL                     L    +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF-LHHLDISSNNF 413
           +   L++ D             T +    L + +     ++ D  ++F   HL++ +  F
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKF 316

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG-ELSAALLT 472
                Q   + L+ L  +  ++N   G  A S  ++  L FLDLS+N  S     +    
Sbjct: 317 G----QFPTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMS 531
              SL +L LS N     +   ++ L QL++L  +++      E  +  S + L+ L +S
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 532 SNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSVSENYLSGFMTTS 590
                         LS LEVL M+ N F+ N    +    R L    +S+  L     T+
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 591 F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFL 647
           F ++SS++ L +  N L         R ++L  + L  N +          C  + +L
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-------SCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (378), Expect = 6e-38
 Identities = 100/504 (19%), Positives = 174/504 (34%), Gaps = 53/504 (10%)

Query: 227 ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
           +  + N+      + N    +P+ L      K LD+SFN L         +   L+ L L
Sbjct: 4   VEVVPNITY-QCMELNF-YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
                + T    +  + S L  L+L+  N +  +    F     L+ L     +L  +  
Sbjct: 60  SRCEIQ-TIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 347 FLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT----------GNLQL 395
           F +     LK L+++HN +          N T LE L L++N               + L
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 396 PDDKHDF-----------------LHHLDISSNNFTGKLPQDMGIILQKL------LYMD 432
            +   D                  LH L + +N  +  + +     L  L      L   
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 433 MSNNHFEGNIASSIAEMKELRF--LDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR 490
            +  + E    S++  +  L      L+  ++  +    L     ++    L        
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--E 295

Query: 491 IFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLE 550
               +      Q+L L N KF       L   K L  L  +SN           +L  LE
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFSE--VDLPSLE 350

Query: 551 VLLMSKNF--FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
            L +S+N   F+G           L+   +S N +    +    +  +EHL  Q ++L  
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 609 PIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQI-CQLT 666
               ++F S  NL+ LD+             N  S+L  L + GN+ +      I  +L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 667 GLGMMDLSHNKFNGSIPSCFTNIT 690
            L  +DLS  +     P+ F +++
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 2e-29
 Identities = 93/538 (17%), Positives = 169/538 (31%), Gaps = 88/538 (16%)

Query: 338 NCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD 397
             +   IP  L      K LDLS N L     +++  +  +L+VL L+         + D
Sbjct: 16  ELNFYKIPDNLPF--STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ---TIED 69

Query: 398 ---DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRF 454
                   L  L ++ N     L       L  L  +     +        I  +K L+ 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 455 LDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY----LYLENNK 510
           L+++ N           ++  +L  L LS N            L Q+      L L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 511 FSGKIEEGLLKSKKLVELRMSSNMLSGHIPH-WMGNLSYLEVLLMSKNFFEGNIPVQLLN 569
            +  I+ G  K  +L +L + +N  S ++    +  L+ LEV  +    F     ++  +
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 570 H---RRLQLFSVSENYLS-------GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSN 619
                 L   ++ E  L+         +     +++V    L   ++      +      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FG 305

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
              L+L +  F      ++    +L+ L    N            L  L  +DLS N   
Sbjct: 306 WQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNG-- 358

Query: 680 GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739
                    ++     +   +    L ++  L  N +    S+ L + QL          
Sbjct: 359 ---------LSFKGCCSQSDFGTTSLKYL-DLSFNGVITMSSNFLGLEQLEH-------- 400

Query: 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFL 798
                                      LD   + L       +   L+ +  L++SH   
Sbjct: 401 ---------------------------LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 799 SESIPESFSNLKMIESLDLSHNRLSGQIPP----KLTELNFLSNFNVSYNNLSGLIPD 852
             +    F+ L  +E L ++ N       P    +L  L FL   ++S   L  L P 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL---DLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (299), Expect = 5e-28
 Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 22/288 (7%)

Query: 110 NYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF 169
              Y D  L   + LF+    + S  L + + E V   + +      + L+++N  +  F
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQF 319

Query: 170 DDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFING-SLESQGIC 228
                     L SL  L    N    + +      L +LE LDLS N ++     SQ   
Sbjct: 320 PT------LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 229 ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALF 287
              +L  L+L  N +   + +    + +L+ LD   + L      S+  +L +L YL + 
Sbjct: 371 GTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 288 DNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ--VQTENFLPTFQLKVLRLPNCSLNVIP 345
             +             S LEVL ++   N  Q     + F     L  L L  C L  + 
Sbjct: 430 HTHTR-VAFNGIFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 346 PFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGN 392
           P   +    L+ L+++ N L  + P       T L+ + L  N +  +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 5e-20
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 13/184 (7%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF----DDSI 173
                        L+ LDLS N    +  N        L++L+ L+  ++      + S+
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 174 FLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL 233
           F    +L +L  L +   + + +      + L +LE L ++ N    +       EL+NL
Sbjct: 417 F---LSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 234 FVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEG 293
             L+L +  +E   P   N+++ L+VL+++ NQL      I   LTSL+ + L  N ++ 
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532

Query: 294 TFPL 297
           + P 
Sbjct: 533 SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 17/95 (17%), Positives = 34/95 (35%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
            +   +  LDLS  ++          L  +  L ++ N +      +FS L  ++ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853
              L+      +  L  L   NV++N +      +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  179 bits (455), Expect = 1e-46
 Identities = 105/525 (20%), Positives = 186/525 (35%), Gaps = 41/525 (7%)

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239
           L +   L+L  N I+ + T      L+ L+ L+L S +   +++ +    L NL +L+L 
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSF--PSIISNLTSLEYLALFDNNFEGTFPL 297
            + I    P+    +  L  L + F  LS +        NL +L  L L  N     +  
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTENF--LPTFQLKVLRLPNCSLNVIPPFLLHQF--D 353
            S    + L+ +  S  N +  V       L    L    L   SL         +    
Sbjct: 142 PSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
            + + L   D+ G   T  +  N    +      S      +      F +  D   N F
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
                   G+    + ++D+S+       +     +K+L+ L+L+ N  + +++      
Sbjct: 261 A-------GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYG 312

Query: 474 CFSLLWLGLSDNNF---YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELR 529
             +L  L LS N     Y   F     L ++ Y+ L+ N  +  I++   K  +KL  L 
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNF---YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLD 368

Query: 530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT 589
           +  N L+      +  +  +  + +S N     +P   L    + L   SEN L      
Sbjct: 369 LRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKINLTANLIHL---SENRLENLDIL 419

Query: 590 SF--NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINE-----C 641
            F   +  ++ L L +N  S            +L  L L +N        ++        
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 642 SNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCF 686
           S+L+ L L  N L    P     LT L  + L+ N+      +  
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  172 bits (438), Expect = 1e-44
 Identities = 116/613 (18%), Positives = 204/613 (33%), Gaps = 69/613 (11%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
           ++  S F   E+LQ L+L +       +    +   +L  L+IL+LG +   +     F 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAF- 93

Query: 176 YLNALTSLTTLILRENNIQGSRTKQG-LSKLKNLEALDLSSNFINGSLESQGICELKNLF 234
               L  L  L L    +  +  K G    LK L  LDLS N I          +L +L 
Sbjct: 94  --QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 235 VLNLEKNNIEDHLPNCLNN--MTRLKVLDISFNQLSGSFPSII----------------- 275
            ++   N I     + L       L    ++ N L                         
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 276 -SNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF--LPTFQLK 332
             N  +++    F N    +    SL     +        +N+       F  L    ++
Sbjct: 212 SGNGWTVDITGNFSNAISKS-QAFSLILAHHIMGAGFG-FHNIKDPDQNTFAGLARSSVR 269

Query: 333 VLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTG 391
            L L +  +  +   +     DLK L+L++N ++      A      L+VL L+ N    
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLG- 327

Query: 392 NLQLPDDKHDFLH---HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE 448
             +L       L    ++D+  N+    +       L+KL  +D+ +N       ++I  
Sbjct: 328 --ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHF 379

Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG-RIFPGYMNLTQLQYLYLE 507
           +  +  + LS N         L     +   + LS+N      I    + +  LQ L L 
Sbjct: 380 IPSIPDIFLSGNKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 508 NNKFSGKIEEGLL-KSKKLVELRMSSNMLSGHI-----PHWMGNLSYLEVLLMSKNFFEG 561
            N+FS    +    ++  L +L +  NML               LS+L+VL ++ N+   
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 562 NIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLL 621
             P    +   L+  S++ N L+         +++E L + +N L  P P       +L 
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLS 550

Query: 622 TLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS 681
            LD+  N F                 L   N      P  I  +       +S    +  
Sbjct: 551 VLDITHNKFICECELS-----TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

Query: 682 IPSCFTNITLWSV 694
                  +     
Sbjct: 606 GCDEEEVLKSLKF 618

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (414), Expect = 1e-41
 Identities = 117/637 (18%), Positives = 203/637 (31%), Gaps = 115/637 (18%)

Query: 253 NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
            +   + L +SFN +     S    L  L+ L L       T    +  N   L +L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 313 TRNNMLQVQTENFLPTFQLKVLRLPNCSLN---VIPPFLLHQFDLKYLDLSHNDLDGAFP 369
             + +  +  + F   F L  LRL  C L+   +   +  +   L  LDLS N +   + 
Sbjct: 82  -SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 370 TWALQNNTKLEVLLLTNNSFTG--NLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK 427
             +      L+ +  ++N        +L   +   L    +++N+   ++  D G  +  
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 428 LLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
              M                    L  LD+S N              +++   G   N  
Sbjct: 201 FRNMV-------------------LEILDVSGNG-------------WTVDITGNFSNAI 228

Query: 488 YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKK---LVELRMSSNMLSGHIPHWMG 544
                   +    +       +      ++          +  L +S   +         
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQK 603
            L  L+VL ++ N               LQ+ ++S N L    +++F  +  V ++ LQK
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC 663
           N ++            L TLDLRDN  +      I+   ++  + L GN L   +P    
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINL 401

Query: 664 QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM 723
               +    LS N+        F               L  +  ++ L +N       S 
Sbjct: 402 TANLI---HLSENRLENLDILYF---------------LLRVPHLQILILNQNRFSSCS- 442

Query: 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG 783
                      G  T      +E                    L L  N L     +E+ 
Sbjct: 443 -----------GDQTPSENPSLEQ-------------------LFLGENMLQLAWETELC 472

Query: 784 E-----LQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS----GQIPPKLTELN 834
                 L  + VL ++HN+L+   P  FS+L  +  L L+ NRL+      +P  L  L 
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL- 531

Query: 835 FLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLC 871
                ++S N L    PD   F +        N  +C
Sbjct: 532 -----DISRNQLLAPNPD--VFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (305), Expect = 3e-28
 Identities = 80/484 (16%), Positives = 157/484 (32%), Gaps = 67/484 (13%)

Query: 98  LNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLK 157
           L+ +           + + +             +       ++ +   +N    T   L 
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN----TFAGLA 264

Query: 158 RLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNF 217
           R                      +S+  L L    +    ++     LK+L+ L+L+ N 
Sbjct: 265 R----------------------SSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNK 301

Query: 218 INGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN 277
           IN  +  +    L NL VLNL  N + +   +    + ++  +D+  N ++         
Sbjct: 302 IN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 278 LTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLP 337
           L  L+ L L DN       L+++     +  + LS  N ++ +   N        ++ L 
Sbjct: 361 LEKLQTLDLRDNA------LTTIHFIPSIPDIFLS-GNKLVTLPKIN----LTANLIHLS 409

Query: 338 NCSLNVIPP--FLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQL 395
              L  +    FLL    L+ L L+ N             N  LE L L  N        
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ----- 464

Query: 396 PDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFL 455
                      ++  + F G         L  L  + +++N+         + +  LR L
Sbjct: 465 ------LAWETELCWDVFEG---------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI 515
            L+ N  +  LS   L +  +L  L +S N       P       L  L + +NKF  + 
Sbjct: 510 SLNSNRLT-VLSHNDLPA--NLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICEC 563

Query: 516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL 575
           E     +         +   +     +  + S + +  +S    +    ++ L      +
Sbjct: 564 ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

Query: 576 FSVS 579
            +V+
Sbjct: 624 CTVT 627

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 19/185 (10%)

Query: 108 SKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN 167
            +N         L   +F     LQ L L++N    +           L  L+ L+L  N
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP----GVFSHLTALRGLSLNSN 514

Query: 168 ---YFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES 224
                  +         +L  L +  N +             +L  LD++ N      E 
Sbjct: 515 RLTVLSHNDL-----PANLEILDISRNQL----LAPNPDVFVSLSVLDITHNKFICECEL 565

Query: 225 QGICELKNLFVLNLEKN--NIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE 282
                  N   + +     +I    P+  + +  L  L            S+  +L  + 
Sbjct: 566 STFINWLNHTNVTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEEVLKSLKFSLFIVC 624

Query: 283 YLALF 287
            + L 
Sbjct: 625 TVTLT 629

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  173 bits (440), Expect = 4e-46
 Identities = 96/543 (17%), Positives = 180/543 (33%), Gaps = 80/543 (14%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
            +          LQ L L ++    +      D   SL  L+ L+L  N+       +  
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWFG 95

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
            L+SL  L L  N  Q          L NL+ L + +      +       L +L  L +
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
           +  ++ ++    L ++  +  L +  ++ +         L+S+ YL L D N        
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLD 358
              +     +  L+ R ++L                      L  +  ++L   ++++ D
Sbjct: 216 LPVDEVSSPMKKLAFRGSVL---------------TDESFNELLKLLRYILELSEVEFDD 260

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP 418
            + N L                      +      +L   +   +  L I          
Sbjct: 261 CTLNGL-----------------GDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDL 302

Query: 419 QDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGEL--SAALLTSCFS 476
             +  +L+K+  + + N+       S    +K L FLDLS+N    E   ++A   +  S
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 477 LLWLGLSDNNF-----YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMS 531
           L  L LS N+       G I    + L  L  L +  N F   + +     +K+  L +S
Sbjct: 363 LQTLVLSQNHLRSMQKTGEIL---LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418

Query: 532 SNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF 591
           S  +                           +   +     L++  VS N L  F   S 
Sbjct: 419 STGIR-------------------------VVKTCIPQT--LEVLDVSNNNLDSF---SL 448

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
            +  ++ LY+ +N L      +LF    LL + +  N    V     +  ++L+ + L  
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 652 NNL 654
           N  
Sbjct: 507 NPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (404), Expect = 2e-41
 Identities = 95/560 (16%), Positives = 176/560 (31%), Gaps = 82/560 (14%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
              ++SLDLS N    +        L +   L++L L  +  +        +L SL  L 
Sbjct: 25  TAAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L +N++  S +      L +L+ L+L  N       +     L NL  L +        +
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 248 P-NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
                  +T L  L+I    L       + ++  + +L L  +              S +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSV 198

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
             L L    N+ + Q            ++      +V+     ++       +       
Sbjct: 199 RYLELR-DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL---- 253

Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ 426
                   + T   +     +      +L   +   +  L I            +  +L+
Sbjct: 254 --SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLE 310

Query: 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGEL--SAALLTSCFSLLWLGLSD 484
           K+  + + N+       S    +K L FLDLS+N    E   ++A   +  SL  L LS 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 485 NNF-----YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHI 539
           N+       G I    + L  L  L +  N F   + +     +K+  L +SS  +    
Sbjct: 371 NHLRSMQKTGEIL---LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR--- 423

Query: 540 PHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHL 599
                                  +   +     L++  VS N L  F   S  +  ++ L
Sbjct: 424 ----------------------VVKTCIPQT--LEVLDVSNNNLDSF---SLFLPRLQEL 456

Query: 600 YLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP 659
           Y+ +N L      +LF                            L  + +  N L+    
Sbjct: 457 YISRNKLKTLPDASLF--------------------------PVLLVMKISRNQLKSVPD 490

Query: 660 NQICQLTGLGMMDLSHNKFN 679
               +LT L  + L  N ++
Sbjct: 491 GIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (337), Expect = 8e-33
 Identities = 89/574 (15%), Positives = 185/574 (32%), Gaps = 79/574 (13%)

Query: 257 LKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNN 316
             V D      + S PS ++   +++ L L  N          L   + L+VL+L   + 
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK-SSR 61

Query: 317 MLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQN 375
           +  ++ + F     L+ L L +  L+ +          LKYL+L  N       T    N
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN 435
            T L+                         L I +     ++ +     L  L  +++  
Sbjct: 122 LTNLQ------------------------TLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 436 NHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY 495
                  + S+  ++++  L L  +  +  L         S+ +L L D N     F   
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 496 MNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS 555
                   +     +        +L  +   EL      +         + +   +   +
Sbjct: 217 PVDEVSSPMKKLAFR------GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIAL 614
            +  +    +  +    ++   + + YL   ++T +  +  V+ + ++ + +   +P + 
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSF 329

Query: 615 FRS-SNLLTLDLRDNGFSGVIPHQ---INECSNLRFLLLRGNNLE--GQIPNQICQLTGL 668
            +   +L  LDL +N                 +L+ L+L  N+L    +    +  L  L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 669 GMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQ 728
             +D+S N F+  +P                 ++  L     L    I      ++    
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPE----------KMRFL----NLSSTGI-----RVVKTCI 429

Query: 729 LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEI 788
             +           +EV  V+ N  +      L  +  L +S NKL   +P        +
Sbjct: 430 PQT-----------LEVLDVSNNNLD-SFSLFLPRLQELYISRNKLK-TLPDASL-FPVL 475

Query: 789 PVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
            V+ +S N L       F  L  ++ + L  N  
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (336), Expect = 1e-32
 Identities = 84/485 (17%), Positives = 166/485 (34%), Gaps = 40/485 (8%)

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
            +  L+L  N I       L     L+VL +  ++++        +L SLE+L L DN+ 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN--FLPTFQLKVLRLPNC-SLNVIPPFL 348
             +   S     S L+ L L    N  Q       F     L+ LR+ N  + + I    
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLM--GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 349 LHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD 407
                 L  L++    L   + + +L++   +  L L  +     L++  D    + +L+
Sbjct: 144 FAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 408 ISSNNFTG--KLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMK-------ELRFLDLS 458
           +   N       P  +  +   +  +    +       + + ++        E+ F D +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 459 KNNF-------SGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF 511
            N         S  +S        ++  L +     +  +   Y  L +++ + +EN+K 
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 512 SGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM---GNLSYLEVLLMSKNFFE--GNIPV 565
              +     +  K L  L +S N++           G    L+ L++S+N          
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 566 QLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
            LL  + L    +S N       +      +  L L    +   +   +     L  LD+
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDV 438

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
            +N               L+ L +  N L+  +P+       L +M +S N+        
Sbjct: 439 SNNNLDSFSLF----LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492

Query: 686 FTNIT 690
           F  +T
Sbjct: 493 FDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (311), Expect = 1e-29
 Identities = 91/556 (16%), Positives = 171/556 (30%), Gaps = 103/556 (18%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
              V    + S   IP  L     +K LDLS N +        L+    L+VL+L ++  
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 390 TGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM 449
                             I  + F           L  L ++D+S+NH     +S    +
Sbjct: 63  N----------------TIEGDAFYS---------LGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY-MNLTQLQYLYLEN 508
             L++L+L  N +      +L  +  +L  L + +   +  I       LT L  L ++ 
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 509 NKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN---------- 557
                  +   LKS + +  L +  +  +  +  +   LS +  L +             
Sbjct: 158 LSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 558 -FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHL--------YLQKNSLSG 608
              E + P++ L  R   L   S N L   +     +S VE              +    
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTG 667
              +    +  +  L +        +    +    ++ + +  + +   +P    Q L  
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335

Query: 668 LGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMG 727
           L  +DLS N              L +              ++ L            L   
Sbjct: 336 LEFLDLSENLM--------VEEYLKNSACKG-----AWPSLQTLV-----------LSQN 371

Query: 728 QLSSEERGPFTFDYLVEVE-------FVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPS 780
            L S ++       L  +                      + +   L+LS   +   + +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF---LNLSSTGIR-VVKT 427

Query: 781 EIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS----GQIPPKLTELNFL 836
            I   Q + VL++S+N L  S       L+    L +S N+L       + P L  +   
Sbjct: 428 CI--PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLKTLPDASLFPVLLVM--- 478

Query: 837 SNFNVSYNNLSGLIPD 852
               +S N L  +   
Sbjct: 479 ---KISRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 40/174 (22%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL 177
           +     +    + L SLD+S N+F  +      D+    ++++ LNL             
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHPM-----PDSCQWPEKMRFLNLSSTG--------- 421

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
             +  + T I                  + LE LD+S+N ++ S        L  L  L 
Sbjct: 422 --IRVVKTCI-----------------PQTLEVLDVSNNNLD-SFSL----FLPRLQELY 457

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
           + +N ++  LP+       L V+ IS NQL      I   LTSL+ + L  N +
Sbjct: 458 ISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 51/282 (18%)

Query: 590 SFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL 649
           S +  +      +  S +  IP  L   + + +LDL  N  + +    +  C+NL+ L+L
Sbjct: 1   SLSCDASGVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVE 709
           + + +     +    L  L  +DLS N  +    S F  ++           L++L    
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS----------SLKYL---- 103

Query: 710 RLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL 769
            L  N                        F  L  ++                    L +
Sbjct: 104 NLMGNPY--------------QTLGVTSLFPNLTNLQT-------------------LRI 130

Query: 770 SCNKLTGEIPSE-IGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP 828
              +   EI       L  +  L +    L     +S  +++ I  L L  +  +  +  
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 829 KLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHL 870
               L+ +    +   NL+                 +     
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  159 bits (405), Expect = 4e-42
 Identities = 103/485 (21%), Positives = 171/485 (35%), Gaps = 47/485 (9%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
             E     L   +           +   L ++  L              +  L +LT + 
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 74

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
              N +        L  L  L  + +++N I        +  L NL  L L  N I D  
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITD-- 126

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
            + L N+T L  L++S N +S    S +S LTSL+ L+   N      PL++L     LE
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKPLANLTT---LE 180

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF-LLHQFDLKYLDLSHNDLDG 366
            L +S  N +  +     L    L+ L   N  ++ I P  +L    L  L L+ N L  
Sbjct: 181 RLDIS-SNKVSDISVLAKLT--NLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD 235

Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ 426
                 L + T L  L L NN  +    L       L  L + +N  +   P      L 
Sbjct: 236 ---IGTLASLTNLTDLDLANNQISNLAPLSGLTK--LTELKLGANQISNISPLAG---LT 287

Query: 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
            L  ++++ N  E    S I+ +K L +L L  NN S       ++S   L  L   +N 
Sbjct: 288 ALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNK 342

Query: 487 FYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNL 546
                     NLT + +L   +N+ S       L   ++ +L ++    +    ++  N+
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQAWTNAPVNYKANV 398

Query: 547 SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSL 606
           S    +           P  + +        ++ N  S     S+  S    +     + 
Sbjct: 399 SIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

Query: 607 SGPIP 611
           SG + 
Sbjct: 457 SGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 1e-39
 Identities = 106/507 (20%), Positives = 179/507 (35%), Gaps = 65/507 (12%)

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
             AL      +L + N+  + +    + L  +  L      I  S++  G+  L NL  +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQI 73

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           N   N + D  P  L N+T+L  + ++ NQ++   P  ++NLT+L  L LF+N      P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
           L +L N   L  L LS  N +  +   + L    L+ L   N   ++ P   L    L+ 
Sbjct: 130 LKNLTN---LNRLELS-SNTISDISALSGLT--SLQQLSFGNQVTDLKPLANLTT--LER 181

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGK 416
           LD+S N +        L   T LE L+ TNN  +     P      L  L ++ N     
Sbjct: 182 LDISSNKVSDISV---LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD- 235

Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS 476
                                       ++A +  L  LDL+ N  S       L+    
Sbjct: 236 --------------------------IGTLASLTNLTDLDLANNQISNLAP---LSGLTK 266

Query: 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS 536
           L  L L  N            LT L  L L  N+         L  K L  L +  N +S
Sbjct: 267 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL--KNLTYLTLYFNNIS 322

Query: 537 GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSV 596
              P  + +L+ L+ L    N       +  L +  +   S   N +S     + N++ +
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN--INWLSAGHNQISDLTPLA-NLTRI 377

Query: 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656
             L L   + +   P+    + ++        G   + P  I++  +     +  N    
Sbjct: 378 TQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS- 434

Query: 657 QIPNQICQLTGLGMMDLSHNKFNGSIP 683
                    +    +      F+G++ 
Sbjct: 435 YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (351), Expect = 5e-35
 Identities = 100/511 (19%), Positives = 175/511 (34%), Gaps = 112/511 (21%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
              +  I ++  I         + L       L    +  ++      +L  +  L  ++
Sbjct: 2   PLGSATITQDTPINQI---FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADR 55

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
             I+    + +  +  L  ++ S NQL+   P  + NLT L  + + +N      PL++L
Sbjct: 56  LGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANL 111

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
            N                            L  L L N  +  I P L +  +L  L+LS
Sbjct: 112 TN----------------------------LTGLTLFNNQITDIDP-LKNLTNLNRLELS 142

Query: 361 HNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQD 420
            N +        L   T L+ L   N         P      L  LDISSN  +      
Sbjct: 143 SNTISDISA---LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD----- 191

Query: 421 MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWL 480
                                  S +A++  L  L  + N  S      +LT+   L  L
Sbjct: 192 ----------------------ISVLAKLTNLESLIATNNQISDITPLGILTN---LDEL 226

Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
            L+ N           +LT L  L L NN+ S      L    KL EL++ +N +S   P
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 282

Query: 541 HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLY 600
             +  L+ L  L +++N  E   P+                          N+ ++ +L 
Sbjct: 283 --LAGLTALTNLELNENQLEDISPIS-------------------------NLKNLTYLT 315

Query: 601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN 660
           L  N++S   P++    + L  L   +N  S V    +   +N+ +L    N +    P 
Sbjct: 316 LYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP- 370

Query: 661 QICQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
            +  LT +  + L+   +  +  +   N+++
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (329), Expect = 3e-32
 Identities = 90/444 (20%), Positives = 152/444 (34%), Gaps = 64/444 (14%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           +++      +L  + ++NN    +        L +L  L  L L  N   D     L  L
Sbjct: 82  DITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDP--LKNL 133

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           T+L  L L  N I        LS L +L+ L   +       + + +  L  L  L++  
Sbjct: 134 TNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISS 186

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N + D   + L  +T L+ L  + NQ+S   P  +  LT+L+ L+L  N  +    + +L
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---IGTL 239

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
           A+ + L  L L+                         N  ++ + P L     L  L L 
Sbjct: 240 ASLTNLTDLDLA-------------------------NNQISNLAP-LSGLTKLTELKLG 273

Query: 361 HNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQD 420
            N +    P   L   T L  L L  N       + + K+  L +L +  NN +   P  
Sbjct: 274 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPVS 328

Query: 421 MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWL 480
               L KL  +   NN       SS+A +  + +L    N  S       L +   +  L
Sbjct: 329 S---LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP---LANLTRITQL 380

Query: 481 GLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP 540
           GL+D  +         N++    +              +       E  ++ N+ S    
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLPSY-TN 437

Query: 541 HWMGNLSYLEVLLMSKNFFEGNIP 564
                 S    +      F G + 
Sbjct: 438 EVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (299), Expect = 2e-28
 Identities = 107/568 (18%), Positives = 182/568 (32%), Gaps = 117/568 (20%)

Query: 286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP 345
             D      F  ++LA        +L  + N+    ++  L   Q+  L+     +  I 
Sbjct: 9   TQDTPINQIFTDTALAE---KMKTVLG-KTNVTDTVSQTDLD--QVTTLQADRLGIKSID 62

Query: 346 PF-LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLH 404
               L+   L  ++ S+N L    P   L+N TKL  +L+ NN       L +  +  L 
Sbjct: 63  GVEYLNN--LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTN--LT 115

Query: 405 HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG 464
            L + +N  T   P      L  L  +++S+N       S+++ +  L+ L    N  + 
Sbjct: 116 GLTLFNNQITDIDPLKN---LTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169

Query: 465 ELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKK 524
                 L +  +L  L +S N            LT L+ L   NN+ S      L     
Sbjct: 170 LKP---LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLGILTN 222

Query: 525 LVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584
           L EL ++ N L   I   + +L+ L  L ++ N      P+                   
Sbjct: 223 LDELSLNGNQLKD-IGT-LASLTNLTDLDLANNQISNLAPLS------------------ 262

Query: 585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNL 644
                   ++ +  L L  N +S   P+A    + L  L+L +N    + P  I+   NL
Sbjct: 263 -------GLTKLTELKLGANQISNISPLAGL--TALTNLELNENQLEDISP--ISNLKNL 311

Query: 645 RFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEH 704
            +L L  NN+    P  +  LT L  +   +NK +                      L +
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS------------------LAN 351

Query: 705 LTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYM 764
           LT +  L      I   + L                                  +NL  +
Sbjct: 352 LTNINWLSAGHNQISDLTPL----------------------------------ANLTRI 377

Query: 765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI-PESFSNLKMIESLDLSHNRLS 823
             L L+    T    +       + + N   N     I P + S+       D++ N  S
Sbjct: 378 TQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

Query: 824 GQIPPKLTELNFLSNFNVSYNNLSGLIP 851
                     +            SG + 
Sbjct: 435 -YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (278), Expect = 1e-25
 Identities = 88/473 (18%), Positives = 162/473 (34%), Gaps = 67/473 (14%)

Query: 384 LTNNSFTGNLQL----PDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE 439
           L + + T +  +     D          +   N T  + Q     L ++  +        
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI- 58

Query: 440 GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLT 499
                 +  +  L  ++ S N  +  ++   L +   L+ + +++N           NLT
Sbjct: 59  -KSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQI--ADITPLANLT 112

Query: 500 QLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFF 559
            L  L L NN+ +    + L     L  L +SSN +S      +  L+ L+ L       
Sbjct: 113 NLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVT 168

Query: 560 EGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSN 619
           +      L N   L+   +S N +S     +  ++++E L    N +S   P+ +   +N
Sbjct: 169 D---LKPLANLTTLERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITPLGIL--TN 222

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
           L  L L  N    +    +   +NL  L L  N +    P  +  LT L  + L  N+ +
Sbjct: 223 LDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278

Query: 680 GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739
              P                  L  LT +  L++N   +    +  +  L +        
Sbjct: 279 NISP------------------LAGLTALTNLELNENQL--EDISPISNLKN-------- 310

Query: 740 DYLVEVEFVTKNRYEVYNG-SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFL 798
              +    +  N     +  S+L  +  L    NK++    S +  L  I  L+  HN +
Sbjct: 311 ---LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365

Query: 799 SESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
           S+  P   +NL  I  L L+    +         ++     N   N    LI 
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP---NTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  107 bits (269), Expect = 1e-24
 Identities = 66/289 (22%), Positives = 110/289 (38%), Gaps = 27/289 (9%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
           L+SL  +NN    +        LG L  L  L+L  N   D   L   +LT+LT L L  
Sbjct: 201 LESLIATNNQISDI------TPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLAN 252

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
           N I        LS L  L  L L +N I+       +  L  L  L L +N +ED   + 
Sbjct: 253 NQISNL---APLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLED--ISP 304

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
           ++N+  L  L + FN +S   P  +S+LT L+ L  ++N       +SSLAN + +  L 
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLS 359

Query: 311 LSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPT 370
               +N +           ++  L L + +    P       ++   +   N        
Sbjct: 360 AG--HNQIS-DLTPLANLTRITQLGLNDQAWTNAPVNYKA--NVSIPNTVKNVTGALIAP 414

Query: 371 WALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ 419
             + +        +T N  +   ++          +   +  F+G + Q
Sbjct: 415 ATISDGGSYTEPDITWNLPSYTNEVSYT-FSQPVTIGKGTTTFSGTVTQ 462

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 3e-35
 Identities = 83/390 (21%), Positives = 140/390 (35%), Gaps = 53/390 (13%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
             +L         +           L       L      D +      L S+T L++  
Sbjct: 2   AATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
             +    + QG+  L NLE L+L+ N I        +  L  L  L +  N I D   + 
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITD--ISA 105

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
           L N+T L+ L ++ + +S   P  ++NLT +  L L  N+      LS L+N + L  L 
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLT 161

Query: 311 LSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF-LLHQFDLKYLDLSHNDLDGAFP 369
           ++   + ++           L  L L    +  I P   L    L Y     N +    P
Sbjct: 162 VT--ESKVK-DVTPIANLTDLYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQITDITP 216

Query: 370 TWALQNNTKLEVLLLTNNSFT-----GNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII 424
              + N T+L  L + NN  T      NL         L  L+I +N  +     D+  +
Sbjct: 217 ---VANMTRLNSLKIGNNKITDLSPLANLSQ-------LTWLEIGTNQIS-----DINAV 261

Query: 425 --LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGL 482
             L KL  +++ +N       S +  + +L  L L+ N         ++    +L  L L
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFL 318

Query: 483 SDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
           S N+          +L+++      N    
Sbjct: 319 SQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (342), Expect = 8e-35
 Identities = 84/400 (21%), Positives = 147/400 (36%), Gaps = 59/400 (14%)

Query: 159 LKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFI 218
              L       +         L      +L++ ++    T     +L+++  L ++   +
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 219 NGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNL 278
             S++  GI  L NL  LNL  N I D  P  L+N+ +L  L I  N+++    S + NL
Sbjct: 57  A-SIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNL 109

Query: 279 TSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPN 338
           T+L  L L ++N      +S LAN +K+  L L    N              L  L +  
Sbjct: 110 TNLRELYLNEDNISD---ISPLANLTKMYSLNLG--ANHNLSDLSPLSNMTGLNYLTVTE 164

Query: 339 CSLNVIPPF-LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD 397
             +  + P   L    L  L L++N ++   P   L + T L       N  T       
Sbjct: 165 SKVKDVTPIANLTD--LYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQIT------- 212

Query: 398 DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDL 457
                                      + +L  + + NN       S +A + +L +L++
Sbjct: 213 -----------DITPVAN---------MTRLNSLKIGNNKITD--LSPLANLSQLTWLEI 250

Query: 458 SKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEE 517
             N  S  ++A  +     L  L +  N           NL+QL  L+L NN+   +  E
Sbjct: 251 GTNQISD-INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 518 GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
            +     L  L +S N ++   P  + +LS ++    +  
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (291), Expect = 4e-28
 Identities = 70/354 (19%), Positives = 123/354 (34%), Gaps = 28/354 (7%)

Query: 331 LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
              L      +N I P      +     L    +         +    +  L++      
Sbjct: 2   AATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57

Query: 391 GNLQLPDDKH-DFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM 449
               +   ++   L +L+++ N  T   P      L KL  + +  N       S++  +
Sbjct: 58  ---SIQGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKIT--DISALQNL 109

Query: 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN 509
             LR L L+++N S  +S   L +   +  L L  N+    +     N+T L YL +  +
Sbjct: 110 TNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165

Query: 510 KFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLN 569
           K         L    L  L ++ N +    P  + +L+ L       N      P  + N
Sbjct: 166 KVKDVTPIANLTD--LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VAN 219

Query: 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNG 629
             RL    +  N ++     + N+S +  L +  N +S    +     + L  L++  N 
Sbjct: 220 MTRLNSLKIGNNKITDLSPLA-NLSQLTWLEIGTNQISDINAVKDL--TKLKMLNVGSNQ 276

Query: 630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
            S +    +N  S L  L L  N L  +    I  LT L  + LS N      P
Sbjct: 277 ISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 5e-28
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 27/268 (10%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           ++S       L+ L L+ ++   +        L +L ++  LNLG N+    +   L+ +
Sbjct: 102 DISALQNLTNLRELYLNEDNISDI------SPLANLTKMYSLNLGANHNLSDL-SPLSNM 154

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           T L  L + E+ ++       ++ L +L +L L+ N I        +  L +L       
Sbjct: 155 TGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYV 208

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I D  P  + NMTRL  L I  N+++   P  ++NL+ L +L +  N       ++++
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD---INAV 261

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDL 359
            + +KL++L +   N +  +   N L   QL  L L N  L      ++    +L  L L
Sbjct: 262 KDLTKLKMLNVG-SNQISDISVLNNLS--QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 360 SHNDLDGAFPTWALQNNTKLEVLLLTNN 387
           S N +    P   L + +K++     N 
Sbjct: 319 SQNHITDIRP---LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (288), Expect = 1e-27
 Identities = 77/422 (18%), Positives = 145/422 (34%), Gaps = 80/422 (18%)

Query: 257 LKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNN 316
              L      ++  FP   ++L       L   +         L +              
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELES-------------- 45

Query: 317 MLQVQTENFLPTFQLKVLRLPNCSLNVIPPF-LLHQFDLKYLDLSHNDLDGAFPTWALQN 375
                         +  L +    +  I     L    L+YL+L+ N +    P   L N
Sbjct: 46  --------------ITKLVVAGEKVASIQGIEYLTN--LEYLNLNGNQITDISP---LSN 86

Query: 376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN 435
             KL  L +  N  T    L +  +  L  L ++ +N +   P      L K+  +++  
Sbjct: 87  LVKLTNLYIGTNKITDISALQNLTN--LRELYLNEDNISDISPLAN---LTKMYSLNLGA 141

Query: 436 NHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY 495
           NH   ++ S ++ M  L +L ++++     ++   + +   L  L L+ N          
Sbjct: 142 NHNLSDL-SPLSNMTGLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQI--EDISPL 195

Query: 496 MNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS 555
            +LT L Y     N+ +      +    +L  L++ +N ++   P  + NLS L  L + 
Sbjct: 196 ASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251

Query: 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF 615
            N       V+ L    L++ +V  N +S       +IS + +L                
Sbjct: 252 TNQISDINAVKDLTK--LKMLNVGSNQIS-------DISVLNNL---------------- 286

Query: 616 RSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH 675
             S L +L L +N         I   +NL  L L  N++    P  +  L+ +   D ++
Sbjct: 287 --SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 676 NK 677
             
Sbjct: 343 QV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (272), Expect = 1e-25
 Identities = 70/383 (18%), Positives = 149/383 (38%), Gaps = 55/383 (14%)

Query: 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503
              A++ E     L K + +  ++   L S   +  L ++          G   LT L+Y
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELES---ITKLVVAGEKV--ASIQGIEYLTNLEY 70

Query: 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563
           L L  N+ +       L   KL  L + +N ++      + NL+ L  L ++++      
Sbjct: 71  LNLNGNQITDISPLSNLV--KLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 564 PVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTL 623
           P+  L    +   ++  N+    ++   N++ + +L + ++ +    PIA    ++L +L
Sbjct: 127 PLANLTK--MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL--TDLYSL 182

Query: 624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
            L  N    + P  +   ++L +     N +    P  +  +T L  + + +NK     P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

Query: 684 SCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLV 743
                             L +L+ +  L+           +   Q+S           L 
Sbjct: 239 ------------------LANLSQLTWLE-----------IGTNQISDIN----AVKDLT 265

Query: 744 EVE--FVTKNR-YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE 800
           +++   V  N+  ++   +NL  +  L L+ N+L  E    IG L  +  L +S N +++
Sbjct: 266 KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 801 SIPESFSNLKMIESLDLSHNRLS 823
             P   ++L  ++S D ++  + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (258), Expect = 7e-24
 Identities = 64/337 (18%), Positives = 131/337 (38%), Gaps = 27/337 (8%)

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
              L      ++  FP     +  +    +L   S T  +   + +   +  L ++    
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKV 56

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
                Q +   L  L Y++++ N       S ++ + +L  L +  N  + ++SA  L +
Sbjct: 57  AS--IQGIEY-LTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT-DISA--LQN 108

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533
             +L  L L+++N          NLT++  L L  N     +   L     L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165

Query: 534 MLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI 593
            +    P  + NL+ L  L ++ N  E   P+  L    L  F+   N ++   T   N+
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQITDI-TPVANM 220

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           + +  L +  N ++   P+A    S L  L++  N  S +    + + + L+ L +  N 
Sbjct: 221 TRLNSLKIGNNKITDLSPLANL--SQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQ 276

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT 690
           +   I   +  L+ L  + L++N+           +T
Sbjct: 277 ISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (258), Expect = 7e-24
 Identities = 65/373 (17%), Positives = 153/373 (41%), Gaps = 50/373 (13%)

Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHI 539
           L         +IFP   +L +     L+    +  + +  L+   + +L ++   ++  I
Sbjct: 5   LATLPAPI-NQIFPD-ADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVA-SI 59

Query: 540 PHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHL 599
              +  L+ LE L ++ N      P+  L    L    +  N ++   +   N++++  L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKITDI-SALQNLTNLREL 115

Query: 600 YLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP 659
           YL ++++S   P+A    + + +L+L  N     +   ++  + L +L +  + ++   P
Sbjct: 116 YLNEDNISDISPLANL--TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

Query: 660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIY 719
             I  LT L  + L++N+     P                  L  LT +         I 
Sbjct: 173 --IANLTDLYSLSLNYNQIEDISP------------------LASLTSLHYFTAYVNQI- 211

Query: 720 YSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG-SNLDYMVGLDLSCNKLTGEI 778
            + +  +  ++           L  +  +  N+    +  +NL  +  L++  N+++   
Sbjct: 212 -TDITPVANMTR----------LNSL-KIGNNKITDLSPLANLSQLTWLEIGTNQISD-- 257

Query: 779 PSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN 838
            + + +L ++ +LN+  N +S+      +NL  + SL L++N+L  +    +  L  L+ 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 839 FNVSYNNLSGLIP 851
             +S N+++ + P
Sbjct: 316 LFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 3e-20
 Identities = 66/398 (16%), Positives = 145/398 (36%), Gaps = 74/398 (18%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
                +   + T  + Q+    L+ +  + ++           I  +  L +L+L+ N  
Sbjct: 24  GIRAVLQKASVTDVVTQEE---LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQI 78

Query: 463 SGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
           +  +S   L++   L  L +  N           NLT L+ LYL  +  S      L   
Sbjct: 79  TD-ISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI--SPLANL 131

Query: 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582
            K+  L + +N     +   + N++ L  L ++++  +   P+   N   L   S++ N 
Sbjct: 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQ 188

Query: 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642
           +   ++   +++S+ +     N ++   P+A    + L +L + +N  + + P  +   S
Sbjct: 189 IED-ISPLASLTSLHYFTAYVNQITDITPVANM--TRLNSLKIGNNKITDLSP--LANLS 243

Query: 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRL 702
            L +L +  N +     N +  LT L M+++  N+ +                      L
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV------------------L 283

Query: 703 EHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762
            +L+ +  L +N+            QL +E+                           L 
Sbjct: 284 NNLSQLNSLFLNN-----------NQLGNEDMEVI---------------------GGLT 311

Query: 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE 800
            +  L LS N +T   P  +  L ++   + ++  + +
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 8e-08
 Identities = 39/232 (16%), Positives = 81/232 (34%), Gaps = 61/232 (26%)

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
             TL       + + P    + +     +L+  ++   +     +L  +  + ++  K  
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 680 GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF 739
            SI                   +E+LT +E L+           L+  Q++     P   
Sbjct: 58  -SIQG-----------------IEYLTNLEYLN-----------LNGNQITDIS--PL-- 84

Query: 740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS 799
                              SNL  +  L +  NK+T    S +  L  +  L ++ + +S
Sbjct: 85  -------------------SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNIS 123

Query: 800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
           +  P   +NL  + SL+L  N     + P L+ +  L+   V+ + +  + P
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  138 bits (350), Expect = 7e-35
 Identities = 76/340 (22%), Positives = 120/340 (35%), Gaps = 41/340 (12%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNALTSLT 184
             E + LDL  N  + + +    D   S   L+ L L  N     +   F   N L +L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEPGAF---NNLFNLR 83

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
           TL LR N ++        + L NL  LD+S N I   L      +L NL  L +  N++ 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 245 DHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
                  + +  L+ L +    L+      +S+L  L  L L   N        S     
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY 200

Query: 305 KLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHND 363
           +L+VL +S     L   T N L    L  L + +C+L  +P   +     L++L+LS+N 
Sbjct: 201 RLKVLEIS-HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI 423
           +        L    +L+ + L                       +    F G        
Sbjct: 260 IS-TIEGSMLHELLRLQEIQLVGGQLA----------------VVEPYAFRG-------- 294

Query: 424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
            L  L  +++S N       S    +  L  L L  N  +
Sbjct: 295 -LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 4e-32
 Identities = 67/302 (22%), Positives = 113/302 (37%), Gaps = 22/302 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
           +LN   F  F  L+ L+L+ N    V          +L  L+ L L  N        +F 
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTLGLRSNRLKLIPLGVF- 100

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
               L++LT L + EN I           L NL++L++  N +   +  +    L +L  
Sbjct: 101 --TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQ 156

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           L LEK N+       L+++  L VL +    ++         L  L+ L +    +  T 
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-L 354
             + L   + L  L ++   N+  V          L+ L L    ++ I   +LH+   L
Sbjct: 217 TPNCLYGLN-LTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHD---FLHHLDISSN 411
           + + L    L      +A +    L VL ++ N  T    L +        L  L + SN
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT---TLEESVFHSVGNLETLILDSN 330

Query: 412 NF 413
             
Sbjct: 331 PL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (322), Expect = 2e-31
 Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 18/312 (5%)

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
              +L+L KN I+    +   +   L+ L+++ N +S   P   +NL +L  L L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLL-H 350
           +   PL      S L  L +S  N ++ +    F   + LK L + +  L  I       
Sbjct: 93  K-LIPLGVFTGLSNLTKLDIS-ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF---LHHLD 407
              L+ L L   +L  + PT AL +   L VL L + +      + D        L  L+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN---AIRDYSFKRLYRLKVLE 206

Query: 408 ISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467
           IS   +   +  +  +    L  + +++ +       ++  +  LRFL+LS N  S  + 
Sbjct: 207 ISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIE 264

Query: 468 AALLTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLYLENNKFSGKIEEGLLKS-KK 524
            ++L     L  + L        +   Y    L  L+ L +  N+ +  +EE +  S   
Sbjct: 265 GSMLHELLRLQEIQLVGGQL--AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 525 LVELRMSSNMLS 536
           L  L + SN L+
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 64/335 (19%), Positives = 119/335 (35%), Gaps = 38/335 (11%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
           T  ++LD+  N++        ++   LE L L +N         +  N   L  L L   
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR-S 89

Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWAL 373
           N +  +    F     L  L +    + ++  ++      LK L++  NDL       A 
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAF 148

Query: 374 QNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDM 433
                LE L L   + T                 I +   +          L  L+ + +
Sbjct: 149 SGLNSLEQLTLEKCNLT----------------SIPTEALSH---------LHGLIVLRL 183

Query: 434 SNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFP 493
            + +       S   +  L+ L++S   +   ++   L    +L  L ++  N      P
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNL--TAVP 240

Query: 494 GYM--NLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLE 550
                +L  L++L L  N  S  IE  +L    +L E+++    L+   P+    L+YL 
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 551 VLLMSKNFFEGNIPVQLLNH-RRLQLFSVSENYLS 584
           VL +S N     +   + +    L+   +  N L+
Sbjct: 300 VLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 2e-22
 Identities = 55/280 (19%), Positives = 99/280 (35%), Gaps = 18/280 (6%)

Query: 405 HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG 464
            +      F   +P+ +    + L   D+  N  +       A    L  L+L++N  S 
Sbjct: 15  AVLCHRKRFV-AVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 465 ELSAALLTSCFSLLWLGLSDNNFY---GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK 521
            +      + F+L  LGL  N        +F G   L+ L  L +  NK    + + + +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG---LSNLTKLDISENKIV-ILLDYMFQ 125

Query: 522 S-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSVS 579
               L  L +  N L          L+ LE L + K     +IP + L+H   L +  + 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 580 ENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI 638
              ++     SF  +  ++ L +        +        NL +L +     + V    +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 639 NECSNLRFLLLRGNNLEGQIPNQI-CQLTGLGMMDLSHNK 677
                LRFL L  N +   I   +  +L  L  + L   +
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ 283

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 65/355 (18%), Positives = 129/355 (36%), Gaps = 59/355 (16%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF 558
           T+ + L L  N+     ++       L EL ++ N++S   P    NL  L  L +  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 559 FEGNIPVQLLNH-RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFR 616
            +  IP+ +      L    +SEN +   +   F ++ +++ L +  N L   I    F 
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFS 149

Query: 617 S-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH 675
             ++L  L L     + +    ++    L  L LR  N+         +L  L ++++SH
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 676 NKFNGSI-PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEER 734
             +  ++ P+C   + L S+ ++    L  +                             
Sbjct: 210 WPYLDTMTPNCLYGLNLTSL-SITHCNLTAVP---------------------------- 240

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNM 793
                 +LV + F                   L+LS N ++  I   +  EL  +  + +
Sbjct: 241 -YLAVRHLVYLRF-------------------LNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 794 SHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL-TELNFLSNFNVSYNNLS 847
               L+   P +F  L  +  L++S N+L+  +   +   +  L    +  N L+
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 59/310 (19%), Positives = 110/310 (35%), Gaps = 55/310 (17%)

Query: 547 SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNS 605
           +   +L + KN  +     +  +   L+   ++EN +S     +F N+ ++  L L+ N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 606 LSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664
           L   IP+ +F   SNL  LD+ +N    ++ +   +  NL+ L +  N+L          
Sbjct: 92  LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 665 LTGLGMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM 723
           L  L  + L       SIP+   +++            L  L    RL   +I       
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLH----------GLIVL----RLRHLNI------- 188

Query: 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG 783
                        ++F  L                  L     L++S       +     
Sbjct: 189 --------NAIRDYSFKRL----------------YRLKV---LEISHWPYLDTMTPNCL 221

Query: 784 ELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK-LTELNFLSNFNVS 842
               +  L+++H  L+     +  +L  +  L+LS+N +S  I    L EL  L    + 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLV 280

Query: 843 YNNLSGLIPD 852
              L+ + P 
Sbjct: 281 GGQLAVVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 38/257 (14%), Positives = 70/257 (27%), Gaps = 55/257 (21%)

Query: 598 HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ 657
            +   +      +P  +   +    LDL  N    +   +     +L  L L  N +   
Sbjct: 15  AVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 658 IPNQICQ-LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716
           +       L  L  + L  N+        FT ++           L  L     +  N I
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS----------NLTKL----DISENKI 116

Query: 717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG 776
                 +L            + F  L  ++                    L++  N L  
Sbjct: 117 -----VILL----------DYMFQDLYNLKS-------------------LEVGDNDLV- 141

Query: 777 EIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNF 835
            I       L  +  L +    L+    E+ S+L  +  L L H  ++         L  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 836 LSNFNVSYNNLSGLIPD 852
           L    +S+      +  
Sbjct: 202 LKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 20/154 (12%)

Query: 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNAL 180
                  L+ L+LS N    +  +     L  L RL+ + L        +   F     L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLAVVEPYAF---RGL 295

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
             L  L +  N +  +  +     + NLE L L SN +         C L         +
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACD------CRLL-WVFRRRWR 347

Query: 241 NNIEDHLPNCLN--NMTRLKVLDISFNQLSGSFP 272
            N     P C     +   +  D     L   F 
Sbjct: 348 LNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFT 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 2e-34
 Identities = 76/375 (20%), Positives = 139/375 (37%), Gaps = 27/375 (7%)

Query: 166 YNYFDDSIFLYLNALTSLTTLILRENNI--QGSRTKQGLSK--LKNLEALDLSSNFINGS 221
           YN                   +  + +I  Q      G     L N + +   ++ +   
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 59

Query: 222 LESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL 281
           L +  +   + + +LNL    IE+           ++ L + FN +    P +  N+  L
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 282 EYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL 341
             L L  N+   + P     N  KL  L +S  NN+ +++ + F  T  L+ L+L +  L
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 342 NVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHD 401
             +   L+    L + ++S+N L        L     +E L  ++NS      +    + 
Sbjct: 178 THVDLSLIPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGPVNV 226

Query: 402 FLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNN 461
            L  L +  NN T      +      L+ +D+S N  E  +     +M+ L  L +S N 
Sbjct: 227 ELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 462 FSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK 521
               L+        +L  L LS N+    +        +L+ LYL++N     ++     
Sbjct: 284 LV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHH 339

Query: 522 SKKLVELRMSSNMLS 536
           +  L  L +S N   
Sbjct: 340 T--LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 3e-31
 Identities = 77/378 (20%), Positives = 146/378 (38%), Gaps = 41/378 (10%)

Query: 119 SLNVSLFHPFEE-----LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFD 170
                ++  FE+      + +   N++   +        L S +++++LNL        D
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEID 85

Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL 230
              F       ++  L +  N I+          +  L  L L  N ++ SL        
Sbjct: 86  TYAF---AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
             L  L++  NN+E    +     T L+ L +S N+L+      +S + SL +  +  N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL 197

Query: 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLH 350
                 LS+LA    +E L  S  N++  V+    +   +L +L+L + +L       L+
Sbjct: 198 ------LSTLAIPIAVEELDAS-HNSINVVRGPVNV---ELTILKLQHNNLTDTAWL-LN 246

Query: 351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISS 410
              L  +DLS+N+L+            +LE L ++NN     L L       L  LD+S 
Sbjct: 247 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304

Query: 411 NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAAL 470
           N+    + ++      +L  + + +N     +  S      L+ L LS N++      AL
Sbjct: 305 NHLL-HVERNQP-QFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRAL 359

Query: 471 LTSCFSLLWLGLSDNNFY 488
                ++    + D + +
Sbjct: 360 FR---NVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 5e-29
 Identities = 78/390 (20%), Positives = 142/390 (36%), Gaps = 55/390 (14%)

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
           + + L        + I        F      L + + +   ++      P + L +  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLD 365
           E+L L+    + ++ T  F     ++ L +   ++  +PP +      L  L L  NDL 
Sbjct: 72  ELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 366 GAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD---KHDFLHHLDISSNNFTGKLPQDMG 422
            + P     N  KL  L ++NN+     ++ DD       L +L +SSN  T  +   + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL- 184

Query: 423 IILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGL 482
             +  L + ++S N       S++A    +  LD S N+ +  +   +      L  L L
Sbjct: 185 --IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVE---LTILKL 233

Query: 483 SDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPH 541
             NN         +N   L  + L  N+   KI        ++L  L +S+N L   +  
Sbjct: 234 QHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 542 WMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYL 601
           +   +  L+VL +S N                 L  V  N              +E+LYL
Sbjct: 290 YGQPIPTLKVLDLSHN----------------HLLHVERN--------QPQFDRLENLYL 325

Query: 602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFS 631
             NS+   + ++      L  L L  N + 
Sbjct: 326 DHNSIV-TLKLSTH--HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 5e-24
 Identities = 58/309 (18%), Positives = 112/309 (36%), Gaps = 23/309 (7%)

Query: 373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
           LQ +     + +   +        D   +    +   ++    KLP  +    +++  ++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 433 MSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY---G 489
           +++   E     + A    ++ L +  N     L   +  +   L  L L  N+      
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSY 548
            IF    N  +L  L + NN    +IE+   ++   L  L++SSN L+ H+   +  +  
Sbjct: 135 GIF---HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 187

Query: 549 LEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
           L    +S N         L     ++    S N ++           +  L LQ N+L+ 
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT- 239

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668
                L     L+ +DL  N    ++ H   +   L  L +  N L   +      +  L
Sbjct: 240 DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 669 GMMDLSHNK 677
            ++DLSHN 
Sbjct: 298 KVLDLSHNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.3 bits (240), Expect = 2e-21
 Identities = 65/402 (16%), Positives = 139/402 (34%), Gaps = 76/402 (18%)

Query: 452 LRFLDLSKNNFSGELSAALLTSCF-SLLWLGLSDNNFYGRIFPGYM--NLTQLQYLYLEN 508
             F D+  +  + ++          +   +   ++    R  P  +  +  Q++ L L +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND 78

Query: 509 NKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQL 567
            +   +I+         + +L M  N +    PH   N+  L VL++ +N    ++P  +
Sbjct: 79  LQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 136

Query: 568 LNH-RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
            ++  +L   S+S N L      +F   +S+++L L  N L+  + ++L    +L   ++
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLI--PSLFHANV 193

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
             N  S      +     +  L    N++   +   +     L ++ L HN         
Sbjct: 194 SYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT-DTAW- 243

Query: 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745
                           L +   +  +D           L   +L      PF        
Sbjct: 244 ----------------LLNYPGLVEVD-----------LSYNELEKIMYHPF-------- 268

Query: 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPES 805
                          +  +  L +S N+L   +      +  + VL++SHN L   +  +
Sbjct: 269 -------------VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERN 313

Query: 806 FSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLS 847
                 +E+L L HN +   +       + L N  +S+N+  
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 58/338 (17%), Positives = 121/338 (35%), Gaps = 43/338 (12%)

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL-NHRRL 573
           I+  L       ++ +       +       L+  +++    +     +P  LL + R++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 574 QLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFS 631
           +L ++++  +    T +F    +++ LY+  N++   +P  +F++   L  L L  N  S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

Query: 632 GVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
            +     +    L  L +  NNLE    +     T L  + LS N+      S   ++  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 692 WSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN 751
            +V       L     VE LD                ++                     
Sbjct: 191 ANVSYNLLSTLAIPIAVEELD-----------ASHNSINVVRGPVN-------------- 225

Query: 752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM 811
                    L     L L  N LT +    +     +  +++S+N L + +   F  ++ 
Sbjct: 226 -------VELTI---LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 812 IESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
           +E L +S+NRL   +      +  L   ++S+N+L  +
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 38/268 (14%), Positives = 82/268 (30%), Gaps = 37/268 (13%)

Query: 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656
             +++   +            +N   +  +++    +    ++    +  L L    +E 
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT----LWSVGN----LDRYRLEHLTFV 708
                      +  + +  N      P  F N+     L    N    L R    +   +
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 709 ERLDV--NSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVT--KNRYEVYNGSNLDYM 764
             L +  N++       ++            TF     ++ +    NR    + S +  +
Sbjct: 144 TTLSMSNNNL-----ERIEDD----------TFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

Query: 765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824
              ++S N L+      +     +  L+ SHN ++         L     L L HN L+ 
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTD 240

Query: 825 QIPPKLTELNFLSNFNVSYNNLSGLIPD 852
                L     L   ++SYN L  ++  
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELEKIMYH 266

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 8/104 (7%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
             P   L+ LDLS+N    V  N          RL+ L L +N       L L+   +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSIVT---LKLSTHHTLK 342

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGIC 228
            L L  N+   +  +     +      D   +         G+C
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (347), Expect = 2e-34
 Identities = 69/397 (17%), Positives = 135/397 (34%), Gaps = 30/397 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
               SL      ++ LDLS N    +        L    +L++LNL  N   +++   L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LE 77

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
           +L++L TL L  N +      Q L    ++E L  ++N I+    S+     +    + L
Sbjct: 78  SLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSR----GQGKKNIYL 127

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTFPL 297
             N I           +R++ LD+  N++   +F  + ++  +LE+L L  N       +
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---V 184

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357
                 +KL+ L LS  +N L      F     +  + L N  L +I   L    +L++ 
Sbjct: 185 KGQVVFAKLKTLDLS--SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
           DL  N             N ++    +   +        +++          +      L
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DL 299

Query: 418 PQDMGIILQKLLYMDMSNNHFEGN----IASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
           P      L  L   + +    +G+    +          R +D  K  +   +   +   
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLR 358

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK 510
             + + L         ++  G     +L     +   
Sbjct: 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (324), Expect = 1e-31
 Identities = 65/480 (13%), Positives = 146/480 (30%), Gaps = 73/480 (15%)

Query: 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
               +   ++ + +     +       N+  L+L  N +       L   T+L++L++S 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN 324
           N L  +    + +L++L  L L +N       +  L     +E L  +  NN+ +V    
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNY------VQELLVGPSIETLHAA-NNNISRVSCSR 118

Query: 325 FLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLL 383
                  K + L N  + ++          ++YLDL  N++D                  
Sbjct: 119 GQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------------- 158

Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
           +       +          L HL++  N     +     ++  KL  +D+S+N     + 
Sbjct: 159 VNFAELAASSDT-------LEHLNLQYNFIY-DVKGQ--VVFAKLKTLDLSSNKLA-FMG 207

Query: 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503
                   + ++ L  N     +  AL                              L++
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKAL-------------------------RFSQNLEH 241

Query: 504 LYLENNKFS-GKIEEGLLKSKKLVELRMSSN-MLSGHIPHWMGNLSYLEVLLMSKNFFEG 561
             L  N F  G + +   K++++  +   +   L+G         +              
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 562 NIPVQL--LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSN 619
               +L  L  +   L S   +          N +    +   K      I     R   
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA 361

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
            +TL+ +       + +     + L   L +      ++ +   + + L ++     ++ 
Sbjct: 362 KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 8e-31
 Identities = 71/424 (16%), Positives = 136/424 (32%), Gaps = 53/424 (12%)

Query: 253 NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
           N  R K+  ++ + L  +  S+  +  +++ L L  N        + LA  +KLE+L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 313 TRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWA 372
             +N+L           +     L                 L+ LDL++N +        
Sbjct: 67  --SNVLYE-----TLDLE----SLST---------------LRTLDLNNNYVQ------E 94

Query: 373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
           L     +E L   NN+ +   ++   +     ++ +++N  T  L         ++ Y+D
Sbjct: 95  LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD 150

Query: 433 MSNNHFEG-NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRI 491
           +  N  +  N A   A    L  L+L  N         +      L  L LS N     +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKL-AFM 206

Query: 492 FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS-GHIPHWMGNLSYLE 550
            P + +   + ++ L NNK    IE+ L  S+ L    +  N    G +  +      ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 551 VLLMSKN------FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKN 604
            +             E      L ++       +   +       +        L  Q +
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL--IALKRKEHALLSGQGS 323

Query: 605 SLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664
                +       +    +D     +  VI            L  +   L+ Q+ N    
Sbjct: 324 ETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 665 LTGL 668
              L
Sbjct: 383 HAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 4e-29
 Identities = 70/481 (14%), Positives = 141/481 (29%), Gaps = 43/481 (8%)

Query: 151 DTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEA 210
           +   +  R KI  +  +    ++     +  ++  L L  N +        L+    LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGS 270
           L+LSSN +  +L+   +  L  L  L+L  N +++     L     ++ L  + N +S  
Sbjct: 63  LNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-R 113

Query: 271 FPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQ 330
                S     + + L +N              S+++ L L   N +  V       +  
Sbjct: 114 VSC--SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSD 169

Query: 331 -LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
            L+ L L    +  +   ++    LK LDLS N L    P    Q+   +  + L NN  
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL 226

Query: 390 TGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM 449
              ++        L H D+  N F     +D     Q++  +       +     +  E 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEEC 283

Query: 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN 509
                          +L A       +L                      +   L  + +
Sbjct: 284 TVPTLGHYGAYCCE-DLPAPFADRLIAL-------------------KRKEHALLSGQGS 323

Query: 510 KFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLN 569
           +   ++E       +  E+          I            L   K   +  +      
Sbjct: 324 ETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS-GPIPIALFRSSNLLTLDLRDN 628
           H  L                +   S ++ L           +     +++ +   D+  +
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 629 G 629
            
Sbjct: 443 K 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (294), Expect = 1e-27
 Identities = 65/486 (13%), Positives = 142/486 (29%), Gaps = 76/486 (15%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
                ++ ++   +    +      +  +D+S N      A+ +A   +L  L+LS N  
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 463 SGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
              L    L++   L  L L++N     +         ++ L+  NN  S ++     + 
Sbjct: 71  YETLDLESLST---LRTLDLNNNYV-QELLV----GPSIETLHAANNNIS-RVSCSRGQG 121

Query: 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582
                + +++N ++       G  S ++ L +  N                ++ +V+   
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN----------------EIDTVNFAE 163

Query: 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642
           L+          ++EHL LQ N +   +   +  +  L TLDL  N  +  +  +    +
Sbjct: 164 LAASSD------TLEHLNLQYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCF-------TNITLWSVG 695
            + ++ LR N L   I   +     L   DL  N F+      F         +   +V 
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 696 NLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV 755
            L     E  T        +                         +   +  + +  + +
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCC----------------EDLPAPFADRLIALKRKEHAL 317

Query: 756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESL 815
                      L    ++    +  E         ++         I +     +   +L
Sbjct: 318 -----------LSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 816 DLSHNRLSGQIP---PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCG 872
           +     L  Q+        EL+      V    L     ++           R       
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 873 PTINKS 878
               ++
Sbjct: 426 QQSVQN 431

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (273), Expect = 4e-25
 Identities = 70/474 (14%), Positives = 148/474 (31%), Gaps = 24/474 (5%)

Query: 322 TENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLE 380
            E      + K+ ++ + SL      L     ++K LDLS N L        L   TKLE
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLE 61

Query: 381 VLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG 440
           +L L++N     L L       L  LD+++N    +L          +  +  +NN+   
Sbjct: 62  LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS- 112

Query: 441 NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLT 499
               S +  +  + + L+ N  +  L          + +L L  N      F     +  
Sbjct: 113 --RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 500 QLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFF 559
            L++L L+ N     ++  ++ + KL  L +SSN L+  +     + + +  + +  N  
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 560 EGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSN 619
              I   L   + L+ F +  N         F   +     + K ++           + 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG----QIPNQICQLTGLGMMDLSH 675
                        +     +    L+       + +G    ++  +         +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 676 NKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERG 735
            ++   I                +  L+      R     +       +   +L      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 736 PFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIP 789
                 L  +    +  Y        + +   D+  +K T ++  E   L+++ 
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 7e-19
 Identities = 55/357 (15%), Positives = 104/357 (29%), Gaps = 63/357 (17%)

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574
           I E      +    +++ + L   +     +   ++ L +S N         L    +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVI 634
           L ++S N L        ++S++  L L  N +       L    ++ TL   +N  S V 
Sbjct: 62  LLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV- 114

Query: 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG-SIPSCFTNITLWS 693
               +     + + L  N +           + +  +DL  N+ +  +      +     
Sbjct: 115 --SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD--- 169

Query: 694 VGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRY 753
                   LEHL     L  N I                                    Y
Sbjct: 170 -------TLEHL----NLQYNFI------------------------------------Y 182

Query: 754 EVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIE 813
           +V        +  LDLS NKL   +  E      +  +++ +N L   I ++    + +E
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 814 SLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHL 870
             DL  N                    V+   +  L     +  T     + G    
Sbjct: 241 HFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 42/345 (12%), Positives = 84/345 (24%), Gaps = 37/345 (10%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
            L          +Q LDL  N  + V      +   S   L+ LNL Y           N
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTV---NFAELAASSDTLEHLNLQY-----------N 179

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
            +  +   ++                   L+ LDLSSN +   +          +  ++L
Sbjct: 180 FIYDVKGQVV----------------FAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISL 221

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLS-GSFPSIISNLTSLEYLALFDNNFEGTFPL 297
             N +   +   L     L+  D+  N    G+     S    ++ +A            
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTE-NFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
                 +          +           L   +  +L         +     +Q   + 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGK 416
           +D                       L     +    +      H  L      +     +
Sbjct: 341 IDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIE 398

Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNN 461
           L           L   +   + E  +     +   +R  D+ ++ 
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 15/246 (6%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD-DSIFLYLNALTSL 183
           F     +  + L NN    + +      L   + L+  +L  N F   ++  + +    +
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE---- 239
            T+  +        T Q   +          +      L +     L  L          
Sbjct: 265 QTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSG 320

Query: 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSS 299
           + +  + L     N  R + +D    Q       +     +   L       +       
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 300 LANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDL 359
            A+      L  +     LQ  TE   P   L+ + +       +    +    ++  D+
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI-VKRYEEMYVEQQSVQNNAIRDWDM 439

Query: 360 SHNDLD 365
             +   
Sbjct: 440 YQHKET 445

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (302), Expect = 8e-30
 Identities = 57/333 (17%), Positives = 111/333 (33%), Gaps = 38/333 (11%)

Query: 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
           +       +   ++++S +    +       S   +K L+L  N         L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 184 TTLILRENNIQGSRTKQGLSKLK----------------NLEALDLSSNFINGSLESQGI 227
             L L  N +  +   + LS L+                ++E L  ++N I+  +     
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR- 118

Query: 228 CELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLAL 286
              +    + L  N I           +R++ LD+  N++   +F  + ++  +LE+L L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
             N       +      +KL+ L LS  +N L      F     +  + L N  L +I  
Sbjct: 177 QYNFIYD---VKGQVVFAKLKTLDLS--SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 347 FLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHL 406
            L    +L++ DL  N             N +++ +          L   +++   +  L
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTL 288

Query: 407 DISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE 439
                     LP      L  L      ++H  
Sbjct: 289 GHYGAYCCEDLPAPFADRLIAL-----GHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (288), Expect = 4e-28
 Identities = 51/286 (17%), Positives = 100/286 (34%), Gaps = 25/286 (8%)

Query: 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
               +   ++ + +     +       N+  L+L  N +       L   T+L++L++S 
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN 324
           N L  +    + +L++L  L L +N       +  L     +E L  +  NN+ +V    
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNY------VQELLVGPSIETLHAA-NNNISRVSCSR 118

Query: 325 FLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLL 383
                  K + L N  + ++          ++YLDL  N++D         ++  LE L 
Sbjct: 119 GQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 384 LTNNSFT---GNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG 440
           L  N      G +         L  LD+SSN     +  +       + ++ + NN    
Sbjct: 176 LQYNFIYDVKGQVVFAK-----LKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV- 227

Query: 441 NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
            I  ++   + L   DL  N F         +    +  +      
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 8e-25
 Identities = 59/307 (19%), Positives = 112/307 (36%), Gaps = 44/307 (14%)

Query: 253 NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
           N  R K+  ++ + L  +  S+  +  +++ L L  N        + LA  +KLE+L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 313 TRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWA 372
             +N+L           +     L                 L+ LDL++N +        
Sbjct: 67  --SNVLYE-----TLDLE----SLST---------------LRTLDLNNNYVQ------E 94

Query: 373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
           L     +E L   NN+ +   ++   +     ++ +++N  T  L         ++ Y+D
Sbjct: 95  LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD 150

Query: 433 MSNNHFEG-NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRI 491
           +  N  +  N A   A    L  L+L  N    ++          L  L LS N     +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKL-AFM 206

Query: 492 FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS-GHIPHWMGNLSYLE 550
            P + +   + ++ L NNK    IE+ L  S+ L    +  N    G +  +      ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 551 VLLMSKN 557
            +     
Sbjct: 266 TVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 16/232 (6%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
           +++L  +NN+   V       +    +  K + L  N       L     + +  L L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
           N I      +  +    LE L+L  NFI   ++ Q       L  L+L  N +   +   
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ--VVFAKLKTLDLSSNKLA-FMGPE 209

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
             +   +  + +  N+L       +    +LE+  L  N F         + + +++ + 
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 311 LSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP-PFLLHQFDLKYLDLSH 361
             T    L  Q E       L            +P PF      L +    H
Sbjct: 269 KQT-VKKLTGQNEEECTVPTL--GHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 56/373 (15%), Positives = 107/373 (28%), Gaps = 87/373 (23%)

Query: 497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK 556
           N  + +   + ++     +      +  + EL +S N LS      +   + LE+L +S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFR 616
           N                 L+   +           ++S++  L L  N +       L  
Sbjct: 68  N----------------VLYETLD---------LESLSTLRTLDLNNNYVQ-----ELLV 97

Query: 617 SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
             ++ TL   +N  S V     +     + + L  N +           + +  +DL  N
Sbjct: 98  GPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 677 KFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERG 735
           + +  +      +             LEHL     L  N I                   
Sbjct: 155 EIDTVNFAELAASSD----------TLEHL----NLQYNFI------------------- 181

Query: 736 PFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSH 795
                            Y+V        +  LDLS NKL   +  E      +  +++ +
Sbjct: 182 -----------------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 796 NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQ 855
           N L   I ++    + +E  DL  N        +           V+   +  L     +
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 856 FATFDESSYRGNL 868
             T     + G  
Sbjct: 282 ECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%)

Query: 778 IPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS 837
           I           +  ++ + L +++     +   ++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 838 NFNVSYNNLSGLIP 851
             N+S N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 2e-29
 Identities = 99/479 (20%), Positives = 164/479 (34%), Gaps = 32/479 (6%)

Query: 159 LKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFI 218
             ILN+  NY  +     + +L+ L  LI+  N IQ           + LE LDLS N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN-- 79

Query: 219 NGSLESQGICELKNLFVLNLEKNNIEDHLPNC--LNNMTRLKVLDISFNQLSGSFPSIIS 276
              L         NL  L+L  N   D LP C    NM++LK L +S   L  S    I+
Sbjct: 80  --KLVKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 277 NLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
           +L   + L +    +        L + +   + ++   N       +  + T     L  
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 337 PNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP 396
             C L             K                   +N  L  +  T NSF   LQL 
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPK------------LSNLTLNNIETTWNSFIRILQLV 244

Query: 397 DDKHDFLHHLDISSNNFTGKLPQDMGII----LQKLLYMDMSNNHFEGNIASSIAEMKEL 452
                 + +  IS+    G+L           L+ L    + ++ F    +        +
Sbjct: 245 WHTT--VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 453 RFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS 512
              + + +  +  +     +     L L  S+N     +F    +LT+L+ L L+ N+  
Sbjct: 303 NIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 513 --GKIEEGLLKSKKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLN 569
              KI E   + K L +L +S N +S             L  L MS N     I   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420

Query: 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN 628
             R+++  +  N +         + +++ L +  N L         R ++L  + L  N
Sbjct: 421 -PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (298), Expect = 4e-28
 Identities = 81/449 (18%), Positives = 163/449 (36%), Gaps = 35/449 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD-SIFLYL 177
            L++S+F   +EL+ LDLS+N    +       +      LK L+L +N FD   I    
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKI-------SCHPTVNLKHLDLSFNAFDALPICKEF 111

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
             ++ L  L L   +++    K  +  + +L    +         E +    L++    +
Sbjct: 112 GNMSQLKFLGLSTTHLE----KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPL 297
           L      +   + + +++   V ++  + +         +        L  N       L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 298 SSL----ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD 353
           +++     +  ++  L+  T      +           +       SL            
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA---------- 277

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
           L    +  +       ++  +  + + +   T +       L   K     HLD S+N  
Sbjct: 278 LSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFE--GNIASSIAEMKELRFLDLSKNNFSGELSAALL 471
           T     +    L +L  + +  N  +    IA    +MK L+ LD+S+N+ S +      
Sbjct: 337 T-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 472 TSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMS 531
           +   SLL L +S N     IF       +++ L L +NK    I + ++K + L EL ++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452

Query: 532 SNMLSGHIPH-WMGNLSYLEVLLMSKNFF 559
           SN L   +P      L+ L+ + +  N +
Sbjct: 453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 5e-22
 Identities = 75/474 (15%), Positives = 165/474 (34%), Gaps = 55/474 (11%)

Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
           +   +LN+ +N I +   + + ++++L++L IS N++     S+      LEYL L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP--FL 348
                 L  +                       +  PT  LK L L   + + +P     
Sbjct: 81  ------LVKI-----------------------SCHPTVNLKHLDLSFNAFDALPICKEF 111

Query: 349 LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDI 408
            +   LK+L LS   L+ +     + +    +VLL+   ++         +      L I
Sbjct: 112 GNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

Query: 409 --SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG------NIASSIAEMKELRFLDLSKN 460
              +N     +       +  L   ++     +       +I + +    +L  L L+  
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 461 NFSGELSAALLTSCF--SLLWLGLSDNNFYGRIFPGYM-----NLTQLQYLYLENNKFSG 513
             +      +L   +  ++ +  +S+    G++          +L  L    + ++ F  
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 514 KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRL 573
                      +     + +            +S    L  S N     +     +   L
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 574 QLFSVSENYLSGFMTTSF---NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNG 629
           +   +  N L      +     + S++ L + +NS+S            +LL+L++  N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
            +  I   +     ++ L L  N ++  IP Q+ +L  L  ++++ N+   S+P
Sbjct: 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.3 bits (224), Expect = 5e-19
 Identities = 78/498 (15%), Positives = 159/498 (31%), Gaps = 50/498 (10%)

Query: 331 LKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
             +L +    ++ +    +     L+ L +SHN +         + N +LE L L++N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 390 TGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI-ILQKLLYMDMSNNHFEGNIASSIAE 448
                +       L HLD+S N F   LP       + +L ++ +S  H E +    IA 
Sbjct: 82  VK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
           +   + L +    +  +     L          L       + F   ++++      LE 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
           +     +E+              S +        + NL+   +     +F      V   
Sbjct: 195 SNIKCVLEDNKCSY-------FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK---NSLSGPIPIALFRSSNLLTLDL 625
                 + +V       F    ++ +S++ L + +   +    P        SN+   + 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
             +G   V     ++ S    L    N L   +      LT L  + L  N+    +   
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI 366

Query: 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745
                              +  +++LD++   + Y                    +   +
Sbjct: 367 A-------------EMTTQMKSLQQLDISQNSVSYDEK------------KGDCSWTKSL 401

Query: 746 EFV--TKNRYEVYNGSNLDYMV-GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI 802
             +  + N         L   +  LDL  NK+   IP ++ +L+ +  LN++ N L    
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 803 PESFSNLKMIESLDLSHN 820
              F  L  ++ + L  N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 54/292 (18%), Positives = 106/292 (36%), Gaps = 14/292 (4%)

Query: 79  CNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSN 138
           C  +  +C+     + +L  N     +  +   T  +  + +   ++H    +    +SN
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--TVWYFSISN 256

Query: 139 NSFEGVYENQAYDTLG-SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSR 197
              +G  + + +D  G SLK L I  +  + F           +++       +  +   
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MV 315

Query: 198 TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE--DHLPNCLNNMT 255
                SK+     LD S+N +      +    L  L  L L+ N ++    +      M 
Sbjct: 316 HMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 256 RLKVLDISFNQLSGSFPSII-SNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
            L+ LDIS N +S        S   SL  L +  N          L    +++VL L   
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCL--PPRIKVLDLH-- 429

Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLD 365
           +N ++   +  +    L+ L + +  L  +P  +  +   L+ + L  N  D
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.1 bits (200), Expect = 5e-16
 Identities = 72/466 (15%), Positives = 145/466 (31%), Gaps = 75/466 (16%)

Query: 405 HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG 464
            L+IS N  +     D+   L KL  + +S+N  +    S     +EL +LDLS N    
Sbjct: 25  ILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV- 82

Query: 465 ELSAALLTSCFSLLWLGLSDNNF----YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLL 520
           ++S     +   L  L LS N F      + F    N++QL++L L            + 
Sbjct: 83  KISCHPTVN---LKHLDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 521 KSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE 580
                  L +               L       +   F        +L+     + ++  
Sbjct: 137 HLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 581 NYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINE 640
           + +         +          + L+         +  L  ++   N F  ++  Q+  
Sbjct: 195 SNIK-------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVW 245

Query: 641 CSNLRFLLLRGNNLEGQIPNQI-----CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVG 695
            + + +  +    L+GQ+  +        L  L +  +  + F       +   +  ++ 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 696 NLDRYRLE--------HLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF 747
           N                ++    LD                L+          +L E+E 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLD-----------FSNNLLTDTVFE--NCGHLTELET 352

Query: 748 VTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG---ELQEIPVLNMSHNFLSESIP- 803
                              L L  N+L  E+        +++ +  L++S N +S     
Sbjct: 353 -------------------LILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 804 ESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
              S  K + SL++S N L+  I   L     +   ++  N +  +
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 54/362 (14%), Positives = 111/362 (30%), Gaps = 16/362 (4%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
            +   L +  N  S ++    + S  KL  L +S N +             LE L +S N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 558 FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSLSGPIPIALF 615
                I         L+   +S N            N+S ++ L L    L     + + 
Sbjct: 80  KLV-KISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 616 RSSNL-LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLS 674
             +   + L L +       P  +    +     L       +  + I  ++   + +L 
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGL---QDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 675 HNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEER 734
            +     +     +  L  +  L     +    +  L +N+I   ++S + + QL     
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKL-----QTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS 794
             +     V+++     R   Y+G++L  +    +  +               + + N +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 795 HNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKG 854
            +          S +     LD S+N L+  +      L  L    +  N L  L     
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 855 QF 856
             
Sbjct: 369 MT 370

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD--DSIFLY 176
            +++           LD SNN          ++  G L  L+ L L  N       I   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLE------------- 223
              + SL  L + +N++     K   S  K+L +L++SSN +  ++              
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 224 -------SQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSII 275
                   + + +L+ L  LN+  N ++       + +T L+ + +  N    S P I 
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 22/283 (7%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
                L + +N +S      +   S L  L +  N    +          L +L L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC--FTNIT----LWSVGN----LDRYRLE 703
           L   I         L  +DLS N F+ ++P C  F N++    L              + 
Sbjct: 81  LVK-IS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 704 HLTFVERLDVNSIGIYYS------SMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN 757
           HL   + L V                 +   L         F ++++V   T    E+ N
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDL 817
              +          + L     +       +  +  + N     +         +    +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVWHTTVWYFSI 254

Query: 818 SHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFD 860
           S+ +L GQ+  +  + +  S   +S + +   +    Q   ++
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (297), Expect = 3e-28
 Identities = 106/510 (20%), Positives = 177/510 (34%), Gaps = 84/510 (16%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
           LQ     +++   +          ++K        ++ ++ +          +    LR+
Sbjct: 13  LQEPLRHSSNLTEMPVE-----AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 191 NNIQGSRT----KQGLSKL----KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNN 242
              + +        GLS L     +LE+L  S N +   L  +    LK+L V N     
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-EL-PELPQSLKSLLVDNNNLKA 125

Query: 243 IEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLAN 302
           + D  P        L+ L +S NQL    P +  N + L+ + + +N+ +    L     
Sbjct: 126 LSDLPPL-------LEYLGVSNNQLE-KLPEL-QNSSFLKIIDVDNNSLKKLPDLPP--- 173

Query: 303 HSKLEVLLLSTRNNMLQVQTENFLPTF----QLKVLRLPNCSLNVIPPFLLHQFDLKYLD 358
              LE +     NN L+      LP       L  +   N SL  +P   L    L+ + 
Sbjct: 174 --SLEFIAAG--NNQLEE-----LPELQNLPFLTAIYADNNSLKKLPDLPLS---LESIV 221

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP 418
             +N L+   P   LQN   L  +   NN       LPD     L  L++  N  T  LP
Sbjct: 222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLK---TLPD-LPPSLEALNVRDNYLT-DLP 273

Query: 419 QDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLL 478
           +    + Q L ++D+S N F   ++        L +L+ S N        +L     SL 
Sbjct: 274 E----LPQSLTFLDVSENIFS-GLSELP---PNLYYLNASSNEIR-----SLCDLPPSLE 320

Query: 479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGH 538
            L +S+N       P      +L+ L    N  + ++ E     + L +L +  N L   
Sbjct: 321 ELNVSNNKL--IELPA--LPPRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-E 371

Query: 539 IPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEH 598
            P    ++  L +           +P    N   L+   V  N L  F        SVE 
Sbjct: 372 FPDIPESVEDLRMNSHLAE-----VPELPQN---LKQLHVETNPLREF---PDIPESVED 420

Query: 599 LYLQKNSLSGPIPIALFRSSNLLTLDLRDN 628
           L +    +  P   A   +  L       +
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (282), Expect = 2e-26
 Identities = 83/509 (16%), Positives = 145/509 (28%), Gaps = 92/509 (18%)

Query: 227 ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
                 L       +N+   +P    N+        ++++   + P        +    L
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
            D                +   L L+  N  L    E       L+ L     SL  +P 
Sbjct: 66  RDC------------LDRQAHELELN--NLGLSSLPELP---PHLESLVASCNSLTELPE 108

Query: 347 FLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKH-DFLHH 405
                  L   + +   L    P         LE L ++NN      +LP+ ++  FL  
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE---KLPELQNSSFLKI 157

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
           +D+ +N+   KLP         L ++   NN  E      +  +  L  +    N+    
Sbjct: 158 IDVDNNSLK-KLPDL----PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-- 208

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525
               L     SL  +   +N       P   NL  L  +Y +NN     + +       L
Sbjct: 209 ---KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP---PSL 259

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585
             L +  N L+  +P    +L++L+V     +     +     N   L   S     L  
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFLDVSENIFS----GLSELPPNLYYLNASSNEIRSLCD 314

Query: 586 FMTT------SFN--------ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS 631
              +      S N           +E L    N L+  +P       NL  L +  N   
Sbjct: 315 LPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE-VPELP---QNLKQLHVEYNPLR 370

Query: 632 GVIPHQI----------------NECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH 675
              P                       NL+ L +  N L  + P+    +  L    ++ 
Sbjct: 371 -EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNS 425

Query: 676 NKFNGSIPSCFTNITLWSVGNLDRYRLEH 704
            +                    + +   H
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  111 bits (280), Expect = 5e-26
 Identities = 101/516 (19%), Positives = 159/516 (30%), Gaps = 88/516 (17%)

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQ------------GI 227
            T L   +   +N+           +K+      + +    +                  
Sbjct: 10  NTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 228 CELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALF 287
           C  +    L L    +   LP    +   L+ L  S N L+   P +  +L SL      
Sbjct: 68  CLDRQAHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 288 DNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF----QLKVLRLPNCSLNV 343
                   P         LE L +S  NN L+      LP       LK++ + N SL  
Sbjct: 123 LKALSDLPP--------LLEYLGVS--NNQLEK-----LPELQNSSFLKIIDVDNNSLKK 167

Query: 344 IPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL 403
           +P        L+++   +N L+   P   LQN   L  +   NNS     +LPD     L
Sbjct: 168 LPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK---KLPDLPLS-L 217

Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
             +   +N    +LP+     L  L  +   NN  +  +      ++ L   D    +  
Sbjct: 218 ESIVAGNNILE-ELPELQN--LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP 273

Query: 464 GELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK 523
                       SL +L +S+N F             L YL   +N+     +       
Sbjct: 274 ELPQ--------SLTFLDVSENIF--SGLSEL--PPNLYYLNASSNEIRSLCDL----PP 317

Query: 524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL 583
            L EL +S+N L   +P     L   E L+ S N     +P    N   L+   V  N L
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN---LKQLHVEYNPL 369

Query: 584 SGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSN 643
             F        SVE L +  +    P         NL  L +  N      P       +
Sbjct: 370 REF---PDIPESVEDLRMNSHLAEVPELP-----QNLKQLHVETNPLR-EFPDIPESVED 420

Query: 644 LRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
           LR   +    +             L      H+  +
Sbjct: 421 LR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (273), Expect = 4e-25
 Identities = 85/423 (20%), Positives = 137/423 (32%), Gaps = 77/423 (18%)

Query: 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILR 189
            L+SL  S NS   + E        SLK L + N       D           L  L + 
Sbjct: 92  HLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDLP-------PLLEYLGVS 139

Query: 190 ENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPN 249
            N ++       L     L+ +D+ +N +   L         +L  +    N +E  LP 
Sbjct: 140 NNQLE---KLPELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE-ELPE 190

Query: 250 CLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVL 309
            L N+  L  +    N L      +     SLE +   +N  E    L  L N   L  +
Sbjct: 191 -LQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILEE---LPELQNLPFLTTI 242

Query: 310 LLSTRNNMLQVQTENFLPTF--QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGA 367
                NN+L+      LP     L+ L + +  L  +P        L +LD+S N   G 
Sbjct: 243 YAD--NNLLKT-----LPDLPPSLEALNVRDNYLTDLPELPQS---LTFLDVSENIFSG- 291

Query: 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK 427
                      L  L  ++N       L D     L  L++S+N    +LP        +
Sbjct: 292 LSELP----PNLYYLNASSNEIR---SLCDLPPS-LEELNVSNNKLI-ELPALPP----R 338

Query: 428 LLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS------GELS--------AALLTS 473
           L  +  S NH    +A      + L+ L +  N           +         A +   
Sbjct: 339 LERLIASFNH----LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533
             +L  L +  N    R FP       ++ L + + +     E     + KL +     +
Sbjct: 395 PQNLKQLHVETNPL--REFP--DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

Query: 534 MLS 536
              
Sbjct: 451 HHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (250), Expect = 3e-22
 Identities = 91/573 (15%), Positives = 171/573 (29%), Gaps = 128/573 (22%)

Query: 252 NNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLL 311
            + T L+      + L+   P    N+ S        + +E   P  +     ++ V  L
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRL 65

Query: 312 STRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTW 371
                             Q   L L N  L+ +P        L+ L  S N L    P  
Sbjct: 66  RD------------CLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLT-ELPE- 108

Query: 372 ALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYM 431
             Q+   L V      + +    L       L +L +S+N    KLP             
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP------------- 147

Query: 432 DMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRI 491
                         +     L+ +D+  N+        L     SL ++   +N      
Sbjct: 148 -------------ELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQL--EE 187

Query: 492 FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEV 551
            P   NL  L  +Y +NN      +        L  +   +N+L   +P  + NL +L  
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILE-ELPE-LQNLPFLTT 241

Query: 552 LLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIP 611
           +    N  +  +P    +   L+  +V +NYL+       +++ ++      + LS   P
Sbjct: 242 IYADNNLLK-TLPDLPPS---LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 612 IALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM 671
                                          NL +L    N +   + +    L  L   
Sbjct: 298 -------------------------------NLYYLNASSNEIR-SLCDLPPSLEEL--- 322

Query: 672 DLSHNKFNGSIPSCFTNIT-LWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLS 730
           ++S+NK    +P+    +  L +  N      E    +++L V    +            
Sbjct: 323 NVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPL------------ 369

Query: 731 SEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV 790
                P   + + ++   +          NL     L +  N L  E P     +++   
Sbjct: 370 --REFPDIPESVEDLRMNSHLAEVPELPQNLKQ---LHVETNPLR-EFPDIPESVED--- 420

Query: 791 LNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823
           L M+   + +    +      +E     H+   
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 7e-21
 Identities = 81/498 (16%), Positives = 160/498 (32%), Gaps = 94/498 (18%)

Query: 375 NNTKLEVLLLTNNSFTGNLQLPDDKHDF--LHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
           +NT L+  L  +++ T   ++P +  +         + + +    P   G   +++    
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSR 64

Query: 433 MSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIF 492
           + +              ++   L+L+    S     +L      L  L  S N+    + 
Sbjct: 65  LRDCL-----------DRQAHELELNNLGLS-----SLPELPPHLESLVASCNSL-TELP 107

Query: 493 PGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVL 552
               +L  L          S            L  L +S+N L   +P  + N S+L+++
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKII 158

Query: 553 LMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPI 612
            +  N  +  +P    +   L+  +   N L        N+  +  +Y   NSL   +P 
Sbjct: 159 DVDNNSLK-KLPDLPPS---LEFIAAGNNQLEELPELQ-NLPFLTAIYADNNSLKK-LPD 212

Query: 613 ALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672
                 +L ++   +N        ++     L  +    N L+  +P+    L  L   +
Sbjct: 213 LP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---N 263

Query: 673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRL-EHLTFVERLDVNSIGIYYSSMLDMGQLSS 731
           +  N     +P    ++T   V       L E    +  L+ +S  I             
Sbjct: 264 VRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI------------- 309

Query: 732 EERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVL 791
                     L E+  V+ N+      +    +  L  S N L  E+P     L++   L
Sbjct: 310 -RSLCDLPPSLEELN-VSNNKLIELP-ALPPRLERLIASFNHLA-EVPELPQNLKQ---L 362

Query: 792 NMSHNFLSE------------------SIPESFSNLKMIESLDLSHNRLSGQIPPKLTEL 833
           ++ +N L E                   +PE   NLK    L +  N L  + P     +
Sbjct: 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPESV 418

Query: 834 NFLSNFNVSYNNLSGLIP 851
             L    ++   +     
Sbjct: 419 EDL---RMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 47/288 (16%), Positives = 85/288 (29%), Gaps = 61/288 (21%)

Query: 563 IPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLT 622
           I  + +++  LQ      + L+     + N+ S    Y   +      P        +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 623 LDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSI 682
             LRD                   L L    L   +P     L  L     S N     +
Sbjct: 63  SRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-EL 106

Query: 683 PSCFTNITLWSVGNLDRYRLEHL-TFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDY 741
           P    ++    V N +   L  L   +E L V++  +    + ++   S  +        
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL--EKLPELQNSSFLKI------- 157

Query: 742 LVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSES 801
                                    +D+  N L  ++P     L+    +   +N L E 
Sbjct: 158 -------------------------IDVDNNSLK-KLPDLPPSLEF---IAAGNNQL-EE 187

Query: 802 IPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
           +PE   NL  + ++   +N L  ++P     L  +       N L  L
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 44/201 (21%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
            + L  LD+S N F G+ E            L  LN   N       L      SL  L 
Sbjct: 276 PQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRSLCDL----PPSLEELN 323

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           +  N +         +    LE L  S N +   +        +NL  L++E N +    
Sbjct: 324 VSNNKLIELP-----ALPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR-EF 372

Query: 248 PNCLNNMTR----------------LKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
           P+   ++                  LK L +  N L   FP I  ++  L      ++  
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLR----MNSER 427

Query: 292 EGTFPLSSLANHSKLEVLLLS 312
                  +     KLE  +  
Sbjct: 428 VVDPYEFAHETTDKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 35/177 (19%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
              L  L+ S+N    +              L+ LN+  N     +         L  LI
Sbjct: 296 PPNLYYLNASSNEIRSL--------CDLPPSLEELNVSNNKLI-ELP---ALPPRLERLI 343

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFIN------GSLESQGIC--------ELKNL 233
              N++      +     +NL+ L +  N +        S+E   +           +NL
Sbjct: 344 ASFNHL-----AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398

Query: 234 FVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
             L++E N +    P+   +   ++ L ++  ++   +         LE      ++
Sbjct: 399 KQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 3e-28
 Identities = 74/359 (20%), Positives = 130/359 (36%), Gaps = 31/359 (8%)

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS 214
           +L   KI+    +         L++   +  L L +  I+        +    ++ L + 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
            N I   L       +  L VL LE+N++        +N  +L  L +S N L       
Sbjct: 108 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL 334
               TSL+ L L  N       LS + +   L    +S   N+L            ++ L
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVS--YNLLS----TLAIPIAVEEL 216

Query: 335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQ 394
              + S+NV+   +  +  L  L L HN+L     T  L N   L  + L+ N      +
Sbjct: 217 DASHNSINVVRGPVNVE--LTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELE---K 268

Query: 395 LPDD---KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKE 451
           +      K   L  L IS+N     L       +  L  +D+S+NH   ++  +  +   
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDR 325

Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF-YGRIFPGYMNLTQLQYLYLENN 509
           L  L L  N+    L  +      +L  L LS N++    +   + N+ +      + +
Sbjct: 326 LENLYLDHNSIV-TLKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 3e-28
 Identities = 70/380 (18%), Positives = 136/380 (35%), Gaps = 50/380 (13%)

Query: 159 LKILNLGYNYFDDSIFLYLNA--LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
               ++  +     ++       L +   +  + + ++                      
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR---------------------- 64

Query: 217 FINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIIS 276
                L +  +   + + +LNL    IE+           ++ L + FN +    P +  
Sbjct: 65  ----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 277 NLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
           N+  L  L L  N+   + P     N  KL  L +S  NN+ +++ + F  T  L+ L+L
Sbjct: 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQL 178

Query: 337 PNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP 396
            +  L  +   L+    L + ++S+N L        L     +E L  ++NS      + 
Sbjct: 179 SSNRLTHVDLSLIPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVR 227

Query: 397 DDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLD 456
              +  L  L +  NN T      +      L+ +D+S N  E  +     +M+ L  L 
Sbjct: 228 GPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 457 LSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIE 516
           +S N     L+        +L  L LS N+    +        +L+ LYL++N     ++
Sbjct: 285 ISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 340

Query: 517 EGLLKSKKLVELRMSSNMLS 536
                +  L  L +S N   
Sbjct: 341 LSTHHT--LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (298), Expect = 6e-28
 Identities = 77/421 (18%), Positives = 144/421 (34%), Gaps = 57/421 (13%)

Query: 228 CELKNLFVLNLEKNNIEDHLPNCL------NNMTRLKVLDISFNQLSGSFPSIISNLTSL 281
           C   NL    +  +   D     +        +   K++    + +     +++ +   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 282 EYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL 341
           E L L D   E      + A    ++ L +   N +  +    F     L VL L    L
Sbjct: 78  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 342 NVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKH 400
           + +P  + H    L  L +S+N+L+        Q  T L+ L L++N  T    +     
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---HVDLSLI 191

Query: 401 DFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKN 460
             L H ++S N  +                              ++A    +  LD S N
Sbjct: 192 PSLFHANVSYNLLS------------------------------TLAIPIAVEELDASHN 221

Query: 461 NFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLL 520
           + +  +   +      L  L L  NN         +N   L  + L  N+   KI     
Sbjct: 222 SIN-VVRGPVNV---ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPF 274

Query: 521 KS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS 579
              ++L  L +S+N L   +  +   +  L+VL +S N    ++        RL+   + 
Sbjct: 275 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332

Query: 580 ENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQIN 639
            N +     ++    ++++L L  N        ALFR  N+    + D      I +Q+ 
Sbjct: 333 HNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQHCKIDYQLE 388

Query: 640 E 640
            
Sbjct: 389 H 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.8 bits (233), Expect = 6e-20
 Identities = 65/402 (16%), Positives = 140/402 (34%), Gaps = 76/402 (18%)

Query: 452 LRFLDLSKNNFSGELSAAL-LTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLYLEN 508
             F D+  +  + ++       +  +   +   ++    R  P  +  +  Q++ L L +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND 84

Query: 509 NKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQL 567
            +   +I+         + +L M  N +    PH   N+  L VL++ +N    ++P  +
Sbjct: 85  LQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142

Query: 568 LNH-RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
            ++  +L   S+S N L      +F   +S+++L L  N L+  + ++L    +L   ++
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLI--PSLFHANV 199

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSC 685
             N  S      +     +  L    N++   +   +     L ++ L HN         
Sbjct: 200 SYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT-DTAW- 249

Query: 686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV 745
                           L +   +  +D           L   +L      PF        
Sbjct: 250 ----------------LLNYPGLVEVD-----------LSYNELEKIMYHPF-------- 274

Query: 746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPES 805
                          +  +  L +S N+L   +      +  + VL++SHN L   +  +
Sbjct: 275 -------------VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 806 FSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLS 847
                 +E+L L HN +   +       + L N  +S+N+  
Sbjct: 320 QPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.5 bits (201), Expect = 5e-16
 Identities = 66/354 (18%), Positives = 133/354 (37%), Gaps = 22/354 (6%)

Query: 500 QLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFF 559
           Q +Y           I+  L       ++ +       +       L+  +++    +  
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 560 EGNIPVQLL-NHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS 617
              +P  LL + R+++L ++++  +    T +F    +++ LY+  N++   +P  +F++
Sbjct: 64  R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQN 121

Query: 618 -SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
              L  L L  N  S +     +    L  L +  NNLE    +     T L  + LS N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP 736
           +      S   ++   +V       L     VE LD                ++      
Sbjct: 182 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD-----------ASHNSINVVRGP- 229

Query: 737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSH 795
                L  ++    N  +     N   +V +DLS N+L  +I      ++Q +  L +S+
Sbjct: 230 -VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 287

Query: 796 NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
           N L  ++      +  ++ LDLSHN L   +     + + L N  + +N++  L
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 38/268 (14%), Positives = 82/268 (30%), Gaps = 37/268 (13%)

Query: 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656
             +++   +            +N   +  +++    +    ++    +  L L    +E 
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89

Query: 657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT----LWSVGN----LDRYRLEHLTFV 708
                      +  + +  N      P  F N+     L    N    L R    +   +
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 709 ERLDV--NSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVT--KNRYEVYNGSNLDYM 764
             L +  N++       ++            TF     ++ +    NR    + S +  +
Sbjct: 150 TTLSMSNNNL-----ERIEDD----------TFQATTSLQNLQLSSNRLTHVDLSLIPSL 194

Query: 765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG 824
              ++S N L+      +     +  L+ SHN ++         L     L L HN L+ 
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTD 246

Query: 825 QIPPKLTELNFLSNFNVSYNNLSGLIPD 852
                L     L   ++SYN L  ++  
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYH 272

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (296), Expect = 4e-28
 Identities = 84/399 (21%), Positives = 148/399 (37%), Gaps = 45/399 (11%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
             +  + L  N+I     +   S+L++L+ L +        + +     L +L +L L+ 
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSF--PSIISNLTSLEYLALFDNNFEGTFPLS 298
           N          N +  L+VL ++   L G+    +    LTSLE L L DNN +   P S
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENF--LPTFQLKVLRLPNCSLNVIPPFLL------- 349
              N  +  VL L+  N +  +  E+          +LRL + +L  +  + L       
Sbjct: 149 FFLNMRRFHVLDLT-FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 350 --HQFDLKYLDLSHNDLDG--AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHH 405
                 +  LDLS N      A   +     TK++ L+L+N+              +   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS--------------YNMG 253

Query: 406 LDISSNNFTGKLPQD--MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
                 NF          G+    +   D+S +     + S  +   +L  L L++N  +
Sbjct: 254 SSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 464 GELSAALLTSCFSLLWLGLSDNNF---YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLL 520
            ++          LL L LS N       R+F     L +L+ L L  N     + +   
Sbjct: 313 -KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN---LDKLEVLDLSYNHIRA-LGDQSF 367

Query: 521 KS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKN 557
                L EL + +N L   +P  +   L+ L+ + +  N
Sbjct: 368 LGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  116 bits (292), Expect = 1e-27
 Identities = 91/411 (22%), Positives = 138/411 (33%), Gaps = 65/411 (15%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            LN + F   ++LQ L +   +   V  N  +     L  L IL L YN     +   F 
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYNQFLQLETGAF- 99

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGL-SKLKNLEALDLSSNFINGSLESQGI-CELKNL 233
             N L +L  L L + N+ G+         L +LE L L  N I   ++       ++  
Sbjct: 100 --NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRF 156

Query: 234 FVLNLEKNNIEDHLPNCLNNMT--RLKVLDISFNQLSGSFPSIIS--------NLTSLEY 283
            VL+L  N ++      L N       +L +S   L       +           TS+  
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 284 LALFDNNFEGTFP--LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL 341
           L L  N F+ +           +K++ L+LS   NM                    N + 
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------NFKDPDNFTF 269

Query: 342 NVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHD 401
                  L    +K  DLS + +  A       + T LE L L  N              
Sbjct: 270 KG-----LEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN----------- 312

Query: 402 FLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNN 461
                 I  N F G         L  LL +++S N      +     + +L  LDLS N+
Sbjct: 313 -----KIDDNAFWG---------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358

Query: 462 FSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENNKF 511
               L         +L  L L  N     +  G +  LT LQ ++L  N +
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 77/440 (17%), Positives = 140/440 (31%), Gaps = 88/440 (20%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI-AEMKELRFLDLSKNN 461
           ++++D+S N+   +L +     LQ L ++ +        I ++    +  L  L L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 462 FSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLYLENNKFSGKIEEGL 519
           F  +L         +L  L L+  N  G +  G     LT L+ L L +N          
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 520 LKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV 578
             + ++   L ++ N +   I     +L                    LL    + L  +
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICE--EDLLNF-----------QGKHFTLLRLSSITLQDM 195

Query: 579 SENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNL-----LTLDLRDNGFSG 632
           +E +L      +    +S+  L L  N     +    F +        L L    N  S 
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 633 VIPHQINECSNLRFLLLRGNNLE---------GQIPNQICQ-LTGLGMMDLSHNKFNGSI 682
                  +  N  F  L  + ++           +   +    T L  + L+ N+ N   
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN--- 312

Query: 683 PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL 742
                         +D      LT + +L+           L    L S +     F+ L
Sbjct: 313 -------------KIDDNAFWGLTHLLKLN-----------LSQNFLGSIDSR--MFENL 346

Query: 743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSES 801
            ++E                    LDLS N +   +  +    L  +  L +  N L  S
Sbjct: 347 DKLEV-------------------LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-S 385

Query: 802 IPES-FSNLKMIESLDLSHN 820
           +P+  F  L  ++ + L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 8e-18
 Identities = 58/300 (19%), Positives = 108/300 (36%), Gaps = 38/300 (12%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD---DSIF 174
             L+ + F P   L+ L L +N+ + +     +    +++R  +L+L +N      +   
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFNKVKSICEEDL 174

Query: 175 LYLNALTSLTTLILRENNIQGSRTKQGLS-------KLKNLEALDLSSNFINGSLESQGI 227
           L        T L L    +Q                K  ++  LDLS N    S+  +  
Sbjct: 175 LNFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 228 CELKNLFVLNLEKNNIEDHLPNCLNN--------------MTRLKVLDISFNQLSGSFPS 273
             +    + +L  +N  +   +  +                + +K  D+S +++     S
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 274 IISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKV 333
           + S+ T LE L L  N        ++    + L  L LS +N +  + +  F    +L+V
Sbjct: 294 VFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEV 351

Query: 334 LRLPNCSLNVIPPFLLHQFD----LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
           L L    +  +       F     LK L L  N L  + P       T L+ + L  N +
Sbjct: 352 LDLSYNHIRALGD---QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 72/424 (16%), Positives = 133/424 (31%), Gaps = 96/424 (22%)

Query: 430 YMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY- 488
           Y+D+S N       +S + +++L+FL + +      +         SL+ L L  N F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 489 --GRIFPGYMNLTQLQYLYLENNKF-SGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM- 543
                F G   L  L+ L L         +     K    L  L +  N +    P    
Sbjct: 94  LETGAFNG---LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 544 GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK 603
            N+    VL ++ N                ++ S+ E  L  F    F       L L  
Sbjct: 151 LNMRRFHVLDLTFN----------------KVKSICEEDLLNFQGKHF-----TLLRLSS 189

Query: 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC 663
            +L                 D+ +            + +++  L L GN  +  +  +  
Sbjct: 190 ITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 664 QLTGLG-----MMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGI 718
                      ++  S+N  +    + F +   ++   L+   ++               
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD------------ 281

Query: 719 YYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEI 778
                L   ++ +  +    F +  ++E                    L L+ N++  +I
Sbjct: 282 -----LSKSKIFALLKS--VFSHFTDLEQ-------------------LTLAQNEIN-KI 314

Query: 779 PSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP----KLTEL 833
                  L  +  LN+S NFL       F NL  +E LDLS+N +   +       L  L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 834 NFLS 837
             L+
Sbjct: 374 KELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 39/290 (13%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGN 652
           + V ++ L  NS++     +  R  +L  L +       VI +      S+L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 653 NLEGQIPNQICQ-LTGLGMMDLSHNKFNGSI--PSCFTNIT----LWSVGN-LDR----- 699
               Q+       L  L ++ L+    +G++   + F  +T    L    N + +     
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 700 --YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN 757
               +     +  L  N +       L   Q         +   L ++        +  N
Sbjct: 149 FFLNMRRFHVL-DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 758 GSNLDYMVGLDLSCNKLTG-------------EIPSEIGELQEIPVLNMSHNFLSESIPE 804
                 +  LDLS N                 +I S I         +  H    +    
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 805 SFSNLKM--IESLDLSHNRLS---GQIPPKLTELNFLSNFNVSYNNLSGL 849
           +F  L+   +++ DLS +++      +    T+L  L    ++ N ++ +
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL---TLAQNEINKI 314

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (282), Expect = 2e-27
 Identities = 58/262 (22%), Positives = 95/262 (36%), Gaps = 18/262 (6%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN--YFDDSIFLYLNALTSLTT 185
                 L+L +N  + +           L +L  L+L  N   F           TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
           L L  N +    +      L+ LE LD   + +    E      L+NL  L++   +   
Sbjct: 83  LDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 246 HLPNCLNNMTRLKVLDISFNQLSGSFPS-IISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
                 N ++ L+VL ++ N    +F   I + L +L +L L     E     ++  + S
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199

Query: 305 KLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD--LKYLDLSHN 362
            L+VL +S  NN   + T  +     L+VL      +       L  F   L +L+L+ N
Sbjct: 200 SLQVLNMS-HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 363 DLD-----GAFPTWALQNNTKL 379
           D        +F  W       L
Sbjct: 259 DFACTCEHQSFLQWIKDQRQLL 280

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 5e-25
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 8/240 (3%)

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFIN-GSLESQGICELKNLFVL 236
              +S T L L  N +Q S       KL  L  L LSSN ++     SQ      +L  L
Sbjct: 25  GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTF 295
           +L  N +   + +    + +L+ LD   + L   S  S+  +L +L YL +   +     
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VA 141

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-L 354
                   S LEVL ++  +       + F     L  L L  C L  + P   +    L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTG-NLQLPDDKHDFLHHLDISSNNF 413
           + L++SHN+   +  T+  +    L+VL  + N       Q        L  L+++ N+F
Sbjct: 202 QVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 62/239 (25%), Positives = 95/239 (39%), Gaps = 12/239 (5%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANH--SKLEVLLLS 312
           +    L++  N+L      +   LT L  L+L  N         S ++   + L+ L LS
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLS 86

Query: 313 TRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP--FLLHQFDLKYLDLSHNDLDGAFPT 370
              N +   + NFL   QL+ L   + +L  +      L   +L YLD+SH         
Sbjct: 87  --FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 371 WALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF--LHHLDISSNNFTGKLPQDMGIILQKL 428
                 + LEVL +  NSF  N   PD   +   L  LD+S      +L       L  L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL 201

Query: 429 LYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
             ++MS+N+F          +  L+ LD S N+        L     SL +L L+ N+F
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 63/285 (22%), Positives = 101/285 (35%), Gaps = 39/285 (13%)

Query: 258 KVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNN- 316
             +  +   L+ S P+ I   +S   L L  N  + + P       ++L  L LS  N  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLS-SNGL 64

Query: 317 -MLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQN 375
                 +++   T  LK L L    +  +    L    L++LD  H++L          +
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN 435
              L  L +++                       +  F G         L  L  + M+ 
Sbjct: 125 LRNLIYLDISHTHTR----------------VAFNGIFNG---------LSSLEVLKMAG 159

Query: 436 NHFEGNIASSI-AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG 494
           N F+ N    I  E++ L FLDLS+     +LS     S  SL  L +S NNF   +   
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF-FSLDTF 217

Query: 495 -YMNLTQLQYLYLENNKFSGKIEEGLLKS--KKLVELRMSSNMLS 536
            Y  L  LQ L    N      ++  L+     L  L ++ N  +
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 15/201 (7%)

Query: 117 VLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF----DDS 172
                         L+ LDLS N    +           L++L+ L+  ++      + S
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 173 IFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKN 232
           +FL L    +L  L +   + +        + L +LE L ++ N    +       EL+N
Sbjct: 121 VFLSL---RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 233 LFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
           L  L+L +  +E   P   N+++ L+VL++S N            L SL+ L    N+  
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 293 GTFPLSSLAN-HSKLEVLLLS 312
            T     L +  S L  L L+
Sbjct: 237 -TSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 9e-18
 Identities = 55/279 (19%), Positives = 100/279 (35%), Gaps = 32/279 (11%)

Query: 405 HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS- 463
            +  +S   T  +P     I      +++ +N  +        ++ +L  L LS N  S 
Sbjct: 11  EIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 464 GELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS- 522
               +       SL +L LS N     +   ++ L QL++L  +++      E  +  S 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582
           + L+ L +S              LS LEVL M+ N F+ N    +               
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------ 173

Query: 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642
                     + ++  L L +  L    P A    S+L  L++  N F  +        +
Sbjct: 174 ----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 643 NLRFLLLRGNNLEGQIPNQICQ--LTGLGMMDLSHNKFN 679
           +L+ L    N++      Q  Q   + L  ++L+ N F 
Sbjct: 224 SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 49/243 (20%), Positives = 72/243 (29%), Gaps = 29/243 (11%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLYLEN 508
               L+L  N     L   +      L  L LS N    +          T L+YL L  
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQL 567
           N     +    L  ++L  L    + L       +  +L  L  L +S            
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---------- 136

Query: 568 LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLR 626
                           +G       +SS+E L +  NS        +F    NL  LDL 
Sbjct: 137 ------HTRVAFNGIFNG-------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 627 DNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCF 686
                 + P   N  S+L+ L +  NN           L  L ++D S N    S     
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 687 TNI 689
            + 
Sbjct: 244 QHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 45/281 (16%), Positives = 83/281 (29%), Gaps = 55/281 (19%)

Query: 549 LEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF---NISSVEHLYLQKNS 605
              L +  N  +           +L   S+S N LS     S      +S+++L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 606 LSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGNNLEGQIPNQICQ 664
           +   +         L  LD + +    +    +     NL +L +   +      N I  
Sbjct: 90  VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 147

Query: 665 -LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM 723
            L+ L ++ ++ N F  +                       L  +  LD           
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDI---------------FTELRNLTFLD----------- 181

Query: 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG 783
           L   QL       F                     ++L  +  L++S N           
Sbjct: 182 LSQCQLEQLSPTAF---------------------NSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 784 ELQEIPVLNMSHNFLSESIPESFSNL-KMIESLDLSHNRLS 823
            L  + VL+ S N +  S  +   +    +  L+L+ N  +
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 61/289 (21%), Positives = 92/289 (31%), Gaps = 67/289 (23%)

Query: 562 NIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLS--GPIPIALFRSS 618
            IP       RL+L     N L       F  ++ +  L L  N LS  G    + F ++
Sbjct: 25  GIPSSA---TRLEL---ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTGLGMMDLSHNK 677
           +L  LDL  NG    +         L  L  + +NL+      +   L  L  +D+SH  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 678 FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPF 737
              +    F  ++           LE L    ++  NS               +     F
Sbjct: 138 TRVAFNGIFNGLS----------SLEVL----KMAGNSF------------QENFLPDIF 171

Query: 738 TFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHN 796
                                + L  +  LDLS  +L  ++       L  + VLNMSHN
Sbjct: 172 ---------------------TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209

Query: 797 FLSESIPESFSNLKMIESLDLSHNRLS-------GQIPPKLTELNFLSN 838
                    +  L  ++ LD S N +           P  L  LN   N
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 60/234 (25%)

Query: 622 TLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS 681
            +     G +  +P  I   S+   L L  N L+        +LT L  + LS N     
Sbjct: 11  EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN----- 62

Query: 682 IPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDY 741
                  ++     +   +    L +++ L  N +                      F  
Sbjct: 63  ------GLSFKGCCSQSDFGTTSLKYLD-LSFNGVITM----------------SSNFLG 99

Query: 742 LVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSE--IGELQEIPVLNMSHNFLS 799
           L                  L++   LD   + L  ++        L+ +  L++SH    
Sbjct: 100 L----------------EQLEH---LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 800 ESIPESFSNLKMIESLDLSHNRLSGQIPP----KLTELNFLSNFNVSYNNLSGL 849
            +    F+ L  +E L ++ N       P    +L  L FL   ++S   L  L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL---DLSQCQLEQL 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (284), Expect = 4e-26
 Identities = 80/458 (17%), Positives = 161/458 (35%), Gaps = 31/458 (6%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
            L +       EL+ L LS+N    +            + L+ L++ +N   +   +   
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRLQN---ISCC 118

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK-NLFVLN 237
            + SL  L L  N+       +    L  L  L LS+      L+   +  L  +  +L+
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLD 177

Query: 238 LEKNNIEDHLPNCLN--NMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           L   +I+      L   N T L ++    +  S      ++ L  L+   +  N+     
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 296 PLSSLANHSKLEVLLLSTRNNM-----LQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLH 350
            ++ L+  ++   LL  T  ++       V+   F     ++ L + N ++         
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 351 QFD------LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLH 404
            +       L    + +                ++ + +L+ +       +         
Sbjct: 298 TYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 405 HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE--GNIASSIAEMKELRFLDLSKNNF 462
            L+ + N FT          L++L  + +  N  +    +A     M  L  LD+S N+ 
Sbjct: 357 FLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 463 SGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
           +            S+L L LS N   G +F       +++ L L NN+    I + +   
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHL 472

Query: 523 KKLVELRMSSNMLSGHIPH-WMGNLSYLEVLLMSKNFF 559
           + L EL ++SN L   +P      L+ L+ + +  N +
Sbjct: 473 QALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (253), Expect = 2e-22
 Identities = 87/465 (18%), Positives = 157/465 (33%), Gaps = 27/465 (5%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
             +AL LS N I+  L    I  L  L VL L  N I     +       L+ LD+S N+
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFL 326
           L  +       + SL +L L  N+F+         N +KL  L LS      +      +
Sbjct: 112 LQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS--AAKFRQLDLLPV 166

Query: 327 PTFQLKVLRLPNCSLNV----IPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVL 382
               L  + L   S ++         +    + +L    N L       ++     L++ 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 383 LLTNNSFTG----NLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ--KLLYMDMSNN 436
            +  N               +   L ++ +     T K    +        + Y+++ N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 437 HFEGNIASSIA-----EMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRI 491
                I           +K L    +    F      AL +    +    LS ++     
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 492 FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS--GHIPHWMGNLSYL 549
                + +   +L    N F+  + +G    K+L  L +  N L     +     N+S L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 550 EVLLMSKNFFEGNIPVQLLN-HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
           E L +S N    +   +       + + ++S N L+G +        V+ L L  N +  
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMS 464

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
            IP  +     L  L++  N    V     +  ++L+++ L  N 
Sbjct: 465 -IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 82/487 (16%), Positives = 160/487 (32%), Gaps = 75/487 (15%)

Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNN 412
           +L+ L LSHN +  +        N  LE L +++N       +       L HLD+S N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND 132

Query: 413 FTGKLPQDMGI-ILQKLLYMDMSNNHFEGNIASSIAEMKE-LRFLDLSKNNFSGELSAAL 470
           F   LP       L KL ++ +S   F       +A +      LDL   +  G  + +L
Sbjct: 133 FD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 471 LTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM 530
                ++L L    N+ +       M++  L +L L N K + +  + L+     +    
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVN--MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 531 SSNMLSGHIPH-------------WMGNLSYLEV--LLMSKNFFEGNIPVQLLNHRRLQL 575
           +   ++                  W   + YL +  L +++              + L +
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 576 FSVSENYLSGFMTTSFNI-SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVI 634
             V            +++ + +    L  +       +     S+   L+   N F+  +
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694
               +    L+ L+L+ N L+            +  ++      N      +     W  
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-- 426

Query: 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYE 754
                        +  L+++S  +  S                 F  L            
Sbjct: 427 ----------AESILVLNLSSNMLTGSV----------------FRCLP----------- 449

Query: 755 VYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPE-SFSNLKMIE 813
                 +     LDL  N++   IP ++  LQ +  LN++ N L  S+P+  F  L  ++
Sbjct: 450 ----PKVKV---LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500

Query: 814 SLDLSHN 820
            + L  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 81/452 (17%), Positives = 152/452 (33%), Gaps = 37/452 (8%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
            R K L +S N +S      IS L+ L  L L  N    +        +  LE L +S  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS-- 108

Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD----LKYLDLSHNDL-DGAFP 369
           +N  ++Q  +  P   L+ L L     +V+P      F     L +L LS          
Sbjct: 109 HN--RLQNISCCPMASLRHLDLSFNDFDVLPVCKE--FGNLTKLTFLGLSAAKFRQLDLL 164

Query: 370 TWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLL 429
             A  + + + + L++ +   G  +     +  + HL    N+        + + +  L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL---FSVQVNMSVNALG 221

Query: 430 YMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS---GELSAALLTSCFSLLW------L 480
           ++ +SN          +           +  N +    E +       F   W      L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 481 GLSDNNFYGRIFPGYMN-----LTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML 535
            + +     RI           L  L   +++N  F    E       ++    +S +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISS 595
                    + S    L  ++N F  ++       +RLQ   +  N L  F   +    +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 596 VEHLYLQKNSL----SGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
           +  L     SL    S         + ++L L+L  N  +G +   +     ++ L L  
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
           N +   IP  +  L  L  ++++ N+   S+P
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 70/468 (14%), Positives = 150/468 (32%), Gaps = 83/468 (17%)

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
           L +S N+ + +L       L +L  + +S+N             ++L +LD+S N     
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 466 LSAALLTSCFSLLWLGLSDNNF----YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLK 521
           +S   + S   L  L LS N+F      + F    NLT+L +L L   KF  +++   + 
Sbjct: 115 ISCCPMAS---LRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFR-QLDLLPVA 167

Query: 522 SKKL--VELRMSSNMLSGHIPH--WMGNLSYLEVLLMSKNFFEGNI-----PVQLLNHRR 572
              L  + L + S  + G       + N + L ++    + F   +      +  L    
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 573 LQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS---SNLLTLDLRDNG 629
           ++L   +   L  F++      ++ ++ LQ    +    + LF+      +  L++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 630 FSGVIPHQI-----NECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
            +  I  +          +L    ++                 + +  LS +        
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 685 CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE 744
           C  +                 +    L+                 +           L  
Sbjct: 348 CPPS----------------PSSFTFLN-----------FTQNVFTDSVFQ--GCSTLKR 378

Query: 745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT--GEIPSEIGELQEIPVLNMSHNFLSESI 802
           ++                    L L  N L    ++      +  +  L++S N L+   
Sbjct: 379 LQT-------------------LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 803 PES-FSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
            +   +  + I  L+LS N L+G +   L     +   ++  N +  +
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 50/374 (13%), Positives = 100/374 (26%), Gaps = 20/374 (5%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSK 556
            + + L L  N  S ++    +    +L  LR+S N +   +   +      LE L +S 
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109

Query: 557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF--NISSVEHLYLQKNSL-SGPIPIA 613
           N  + NI    +    L+   +S N            N++ +  L L         +   
Sbjct: 110 NRLQ-NISCCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 614 LFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDL 673
                + + LDL      G    +  +  N   L L  +            +  LG + L
Sbjct: 167 AHLHLSCILLDLVSYHIKGG-ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 674 SHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733
           S+ K N                      L ++T           +          +    
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGP---TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNM 793
               T    ++ E  T      Y+ + L  ++   +          +      E+ +  +
Sbjct: 283 IYNLTITERIDREEFT------YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 794 SHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK 853
           S +           +      L+ + N  +  +    + L  L    +  N L       
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 854 GQFATFDESSYRGN 867
                         
Sbjct: 397 LMTKNMSSLETLDV 410

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 5e-25
 Identities = 61/319 (19%), Positives = 103/319 (32%), Gaps = 50/319 (15%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNALTSLT 184
             +   LDL NN    + +        +LK L  L L  N         F     L  L 
Sbjct: 51  PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAF---APLVKLE 103

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
            L L +N ++    K      K L+ L +  N I   +       L  + V+ L  N ++
Sbjct: 104 RLYLSKNQLKELPEKM----PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

Query: 245 DHL--PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLAN 302
                      M +L  + I+   ++ + P       SL  L L  N        +SL  
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKG 214

Query: 303 HSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN 362
            + L  L LS  N++  V   +   T  L+ L L N  L  +P  L     ++ + L +N
Sbjct: 215 LNNLAKLGLS-FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273

Query: 363 DL----DGAF-PTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
           ++       F P            + L +N               + + +I  + F    
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNP--------------VQYWEIQPSTFRC-- 317

Query: 418 PQDMGIILQKLLYMDMSNN 436
                  +     + + N 
Sbjct: 318 -------VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 3e-24
 Identities = 53/278 (19%), Positives = 94/278 (33%), Gaps = 23/278 (8%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
            +    F   + L +L L NN    +           L +L+ L L  N   +   L   
Sbjct: 66  EIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLKE---LPEK 118

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFI-NGSLESQGICELKNLFVLN 237
              +L  L + EN I     K   + L  +  ++L +N + +  +E+     +K L  + 
Sbjct: 119 MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPL 297
           +   NI   +P        L  L +  N+++    + +  L +L  L L  N+       
Sbjct: 178 IADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDN 233

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD---- 353
            SLAN   L  L L+  NN L            ++V+ L N +++ I             
Sbjct: 234 GSLANTPHLRELHLN--NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 354 ---LKYLDLSHNDLDGAF-PTWALQNNTKLEVLLLTNN 387
                 + L  N +          +       + L N 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (255), Expect = 1e-23
 Identities = 61/337 (18%), Positives = 108/337 (32%), Gaps = 65/337 (19%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
                L L+ N I           LKNL  L L +N I+  +       L  L  L L K
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N +++           L+ L +  N+++    S+ + L  +  + L  N  + +  + + 
Sbjct: 110 NQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENG 165

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
           A                       F    +L  +R+ + ++  IP  L     L  L L 
Sbjct: 166 A-----------------------FQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLD 200

Query: 361 HNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQD 420
            N +       +L+    L  L L+ NS +                 + + +        
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSIS----------------AVDNGSLAN----- 238

Query: 421 MGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS-----GELSAALLTSCF 475
                  L  + ++NN     +   +A+ K ++ + L  NN S             T   
Sbjct: 239 ----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 476 SLLWLGLSDNNF-YGRIFPG-YMNLTQLQYLYLENNK 510
           S   + L  N   Y  I P  +  +     + L N K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 61/310 (19%), Positives = 109/310 (35%), Gaps = 49/310 (15%)

Query: 379 LEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHF 438
           L V+  ++       ++P D       LD+ +N  T ++       L+ L  + + NN  
Sbjct: 33  LRVVQCSDLGLE---KVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 439 EGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM-- 496
                 + A + +L  L LSKN    EL   +  +   L  L + +N          +  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT---LQELRVHENEI--TKVRKSVFN 142

Query: 497 NLTQLQYLYLENNKF-SGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLM 554
            L Q+  + L  N   S  IE G  +  KKL  +R++   ++  IP   G    L  L +
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHL 199

Query: 555 SKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIAL 614
             N                ++  V    L G        +++  L L  NS+S  +    
Sbjct: 200 DGN----------------KITKVDAASLKGL-------NNLAKLGLSFNSISA-VDNGS 235

Query: 615 FRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG------QIPNQICQLTG 667
             +  +L  L L +N     +P  + +   ++ + L  NN+          P    +   
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 668 LGMMDLSHNK 677
              + L  N 
Sbjct: 295 YSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 35/259 (13%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
                L LQ N ++           NL TL L +N  S + P        L  L L  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDV 713
           L+ ++P ++     L  + +  N+      S F  +           ++  +     L  
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN----------QMIVV----ELGT 154

Query: 714 NSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVT--KNRYEVYNGSNLDYMVGLDLSC 771
           N              L S       F  + ++ ++                 +  L L  
Sbjct: 155 N-------------PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201

Query: 772 NKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL 830
           NK+T ++ +     L  +  L +S N +S     S +N   +  L L++N+L  ++P  L
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 831 TELNFLSNFNVSYNNLSGL 849
            +  ++    +  NN+S +
Sbjct: 260 ADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 63/337 (18%), Positives = 118/337 (35%), Gaps = 72/337 (21%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
                L L+NNK + +I++G  K+ K L  L + +N +S   P     L  LE L +SKN
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 558 FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSL-SGPIPIALF 615
             +  +P ++   + LQ   V EN ++    + F  ++ +  + L  N L S  I    F
Sbjct: 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 616 RS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTGLGMMDL 673
           +    L  + + D   +  IP  +    +L  L L GN +  ++     + L  L  + L
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 674 SHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733
           S N  +        N             L  L     L+ N +                 
Sbjct: 224 SFNSISAVDNGSLANTP----------HLREL----HLNNNKL----------------V 253

Query: 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSE-------IGELQ 786
           + P                      ++  Y+  + L  N ++  I S          +  
Sbjct: 254 KVPGGL-------------------ADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKA 293

Query: 787 EIPVLNMSHNFLSESI--PESFSNLKMIESLDLSHNR 821
               +++  N +      P +F  + +  ++ L + +
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 52/311 (16%), Positives = 100/311 (32%), Gaps = 66/311 (21%)

Query: 547 SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNS 605
               +L +  N           N + L    +  N +S     +F  +  +E LYL KN 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 606 LSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL-EGQIPNQICQ 664
           L   +P  + +   L  L + +N  + V     N  + +  + L  N L    I N   Q
Sbjct: 112 LKE-LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 665 -LTGLGMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSS 722
            +  L  + ++      +IP     +             L  L     LD N        
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPS-------------LTEL----HLDGN-------- 202

Query: 723 MLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI 782
                +++  +                           L+ +  L LS N ++      +
Sbjct: 203 -----KITKVDAASL---------------------KGLNNLAKLGLSFNSISAVDNGSL 236

Query: 783 GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG------QIPPKLTELNFL 836
                +  L++++N L   +P   ++ K I+ + L +N +S         P   T+    
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 837 SNFNVSYNNLS 847
           S  ++  N + 
Sbjct: 296 SGVSLFSNPVQ 306

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (271), Expect = 5e-25
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 13/237 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           T+   L L EN IQ  +       L++LE L LS N I  ++E      L NL  L L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N +          +++LK L +  N +        + + SL  L L +          + 
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDL 359
              S L  L L+   N+ ++      P  +L  L L    L+ I P        L+ L +
Sbjct: 182 EGLSNLRYLNLA-MCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 360 SHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD---KHDFLHHLDISSNNF 413
             + +       A  N   L  + L +N+ T    LP D       L  + +  N +
Sbjct: 239 IQSQIQ-VIERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (266), Expect = 2e-24
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNALTSLT 184
               + L+L  N  + +  N    +   L+ L+IL L  N     +   F   N L +L 
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAF---NGLANLN 115

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
           TL L +N +  +        L  L+ L L +N I  S+ S     + +L  L+L +    
Sbjct: 116 TLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 245 DHLP-NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANH 303
            ++       ++ L+ L+++   L    P+ ++ L  L+ L L  N+        S    
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGL 230

Query: 304 SKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHN 362
             L+ L +  ++ +  ++   F     L  + L + +L ++P  L      L+ + L HN
Sbjct: 231 MHLQKLWMI-QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

Query: 363 DLD 365
             +
Sbjct: 290 PWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 6e-19
 Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 16/204 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIFL 175
           ++ +  F+    L +L+L +N    +           L +LK L L  N         F 
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESIPSYAF- 156

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
             N + SL  L L E       ++     L NL  L+L+   +    E   +  L  L  
Sbjct: 157 --NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDE 211

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           L+L  N++    P     +  L+ L +  +Q+     +   NL SL  + L  NN     
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQ 319
           P         LE + L   +N   
Sbjct: 271 PHDLFTPLHHLERIHLH--HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 54/256 (21%), Positives = 95/256 (37%), Gaps = 19/256 (7%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
           Q   +     +L  +P  +    + + L+L  N +       + ++   LE+L L+ N  
Sbjct: 44  QFSKVICVRKNLREVPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100

Query: 390 TGNLQLPDD---KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI 446
                +          L+ L++  N  T  +P    + L KL  + + NN  E +I S  
Sbjct: 101 R---TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 447 -AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505
              +  LR LDL +      +S        +L +L L+  N   R  P    L +L  L 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELD 213

Query: 506 LENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN---FFEG 561
           L  N  S  I  G  +    L +L M  + +     +   NL  L  + ++ N       
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 562 NIPVQLLNHRRLQLFS 577
           ++   L +  R+ L  
Sbjct: 273 DLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 57/260 (21%), Positives = 91/260 (35%), Gaps = 51/260 (19%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           ++   L L +N +      +     +L  L L  N    +     N  +NL  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDV 713
           L          L+ L  + L +N         F  I            L  L        
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP----------SLRRL-------- 165

Query: 714 NSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK 773
                    + ++ +LS    G   F+ L                SNL Y   L+L+   
Sbjct: 166 --------DLGELKRLSYISEG--AFEGL----------------SNLRY---LNLAMCN 196

Query: 774 LTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK-LTE 832
           L  EIP+ +  L ++  L++S N LS   P SF  L  ++ L +  +++   I       
Sbjct: 197 LR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDN 253

Query: 833 LNFLSNFNVSYNNLSGLIPD 852
           L  L   N+++NNL+ L  D
Sbjct: 254 LQSLVEINLAHNNLTLLPHD 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 5e-10
 Identities = 60/287 (20%), Positives = 96/287 (33%), Gaps = 68/287 (23%)

Query: 562 NIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNL 620
            I       R L L    EN +      SF ++  +E L L +N +      A    +NL
Sbjct: 61  GISTNT---RLLNL---HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQI-CQLTGLGMMDLSHNKFN 679
            TL+L DN  + +        S L+ L LR N +E  IP+    ++  L  +DL   K  
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 680 GSIPS-CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFT 738
             I    F  ++           L +L                  L M  L         
Sbjct: 174 SYISEGAFEGLS----------NLRYLN-----------------LAMCNLREIP----N 202

Query: 739 FDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNF 797
              L++++                    LDLS N L+  I       L  +  L M  + 
Sbjct: 203 LTPLIKLDE-------------------LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ 242

Query: 798 LSESIPESFSNLKMIESLDLSHNRLSG------QIPPKLTELNFLSN 838
           +      +F NL+ +  ++L+HN L+            L  ++   N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 9e-25
 Identities = 52/322 (16%), Positives = 101/322 (31%), Gaps = 38/322 (11%)

Query: 175 LYLNALTSLTTLI--------LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG 226
           LY    T+L                +     +    +   N +    +   +  + +   
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 227 ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
                    L L    +    P+    ++ L+ + I    L    P  +     LE L L
Sbjct: 77  DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRN----------NMLQVQTENFLPTFQLKVLRL 336
             N      P +S+A+ ++L  L +              +         L    L+ LRL
Sbjct: 135 ARNPLR-ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV--NLQSLRL 190

Query: 337 PNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNL--- 393
               +  +P  + +  +LK L + ++ L  A    A+ +  KLE L L   +   N    
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPKLEELDLRGCTALRNYPPI 248

Query: 394 --QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKE 451
                      L  L +   +    LP D+   L +L  +D+        + S IA++  
Sbjct: 249 FGGRAP-----LKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 452 LRFLDLSKNNFSGELSAALLTS 473
              + +   +   +L      +
Sbjct: 303 NCIILVP-PHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 5e-23
 Identities = 46/332 (13%), Positives = 100/332 (30%), Gaps = 32/332 (9%)

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
            ++ +  + L    +     +  ++S             +          AN +  ++  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA-----DRNRWHSAWRQANSNNPQIET 62

Query: 311 LSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPT 370
            + R                   L L +  L   P        L+++ +    L    P 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 371 WALQNNTKLEVLLLTNNSFT------GNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII 424
             +Q    LE L L  N          +L         L  L I +     +LP+ +   
Sbjct: 122 -TMQQFAGLETLTLARNPLRALPASIASLN-------RLRELSIRACPELTELPEPLAST 173

Query: 425 --------LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS 476
                   L  L  + +       ++ +SIA ++ L+ L +  +  S  L  A +     
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPK 230

Query: 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS 536
           L  L L          P +     L+ L L++      +   + +  +L +L +   +  
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 537 GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
             +P  +  L    ++L+  +  +  +     
Sbjct: 291 SRLPSLIAQLPANCIILVPPH-LQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 51/256 (19%), Positives = 85/256 (33%), Gaps = 41/256 (16%)

Query: 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD---DSIFLYLNALTSLTT 185
               +L+L +       +         L  L+ + +         D++         L T
Sbjct: 81  PGRVALELRSVPLPQFPD-----QAFRLSHLQHMTIDAAGLMELPDTMQ----QFAGLET 131

Query: 186 LILRENNIQGSRTK--QGLSKLKNLEALDLSSN--------FINGSLESQGICELKNLFV 235
           L L  N +          ++ L  L  L + +          +  +  S     L NL  
Sbjct: 132 LTLARNPL----RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           L LE   I   LP  + N+  LK L I  + LS +    I +L  LE L L        +
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPT-----FQLKVLRLPNCS-LNVIPPFLL 349
           P       + L+ L+L   +N+L       LP       QL+ L L  C  L+ +P  + 
Sbjct: 246 P-PIFGGRAPLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 350 HQFDLKYLDLSHNDLD 365
                  + +  +   
Sbjct: 299 QLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 4e-21
 Identities = 45/335 (13%), Positives = 91/335 (27%), Gaps = 54/335 (16%)

Query: 522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN 581
           S     L    +         +           ++     +   +  N    Q+ + +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGR 66

Query: 582 YLSGFMTTSFNISSV--EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQIN 639
            L        + +      L L+   L    P   FR S+L  + +   G    +P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 640 ECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR 699
           + + L  L L  N L   +P  I  L  L  + +        +P    +           
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG------ 177

Query: 700 YRLEHLTFVERLDVNSIGIYYSSML--DMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN 757
              + L  ++ L +   GI     L   +  L +          L               
Sbjct: 178 -EHQGLVNLQSLRLEWTGI---RSLPASIANLQN----------LKS------------- 210

Query: 758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDL 817
                    L +  + L+  +   I  L ++  L++       + P  F     ++ L L
Sbjct: 211 ---------LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 818 SHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
                   +P  +  L  L   ++        +P 
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 29/235 (12%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFD---DSIFLYLNALTSLTTLI 187
           LQ + +       + +     T+     L+ L L  N       SI     +L  L  L 
Sbjct: 106 LQHMTIDAAGLMELPD-----TMQQFAGLETLTLARNPLRALPASI----ASLNRLRELS 156

Query: 188 LRENN--------IQGSRTKQGLSKLKNLEALDLSSNFINGSLES--QGICELKNLFVLN 237
           +R           +  +        L NL++L L        + S    I  L+NL  L 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT----GIRSLPASIANLQNLKSLK 212

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPL 297
           +  + +   L   ++++ +L+ LD+       ++P I      L+ L L D +   T P 
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP- 270

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF 352
             +   ++LE L L      L              ++ +P      +        
Sbjct: 271 LDIHRLTQLEKLDLR-GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 47/306 (15%), Positives = 97/306 (31%), Gaps = 24/306 (7%)

Query: 400 HDFLHH------LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR 453
           H   HH      L    +         +    Q+    D +  H     A   A     +
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHS----AWRQANSNNPQ 59

Query: 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG 513
               +              +    + L L       +       L+ LQ++ ++      
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 514 KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN---------FFEGNIP 564
           ++ + + +   L  L ++ N L   +P  + +L+ L  L +                +  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 565 VQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLD 624
            +      LQ   +    +     +  N+ +++ L ++ + LS  +  A+     L  LD
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235

Query: 625 LRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
           LR        P      + L+ L+L+  +    +P  I +LT L  +DL        +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 685 CFTNIT 690
               + 
Sbjct: 296 LIAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 49/357 (13%), Positives = 112/357 (31%), Gaps = 58/357 (16%)

Query: 495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLM 554
           + + +  + LY + +       + L + ++      +    +        N +  ++   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63

Query: 555 SKNFFEGNIP-VQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIA 613
           +    +     ++           +    L  F   +F +S ++H+ +    L   +P  
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDT 122

Query: 614 LFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ--------- 664
           + + + L TL L  N     +P  I   + LR L +R      ++P  +           
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSML 724
           L  L  + L       S+P+        S+ NL    L+ L    ++  + +     S L
Sbjct: 182 LVNLQSLRLEWTGIR-SLPA--------SIANLQN--LKSL----KIRNSPL-----SAL 221

Query: 725 --DMGQLSSEERGPFTFDYLVEVEFVTKNR-----YEVYNGSNLDYMVGLDLS-CNKLTG 776
              +  L            L E++                 + L     L L  C+ L  
Sbjct: 222 GPAIHHLPK----------LEELDLRGCTALRNYPPIFGGRAPLKR---LILKDCSNLL- 267

Query: 777 EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTEL 833
            +P +I  L ++  L++        +P   + L     + +  +  +     +    
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 8e-19
 Identities = 55/372 (14%), Positives = 104/372 (27%), Gaps = 53/372 (14%)

Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLD 358
              + S  E L       +            Q +     + +         +  + +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDV----LSQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF--LHHLDISSNNFTGK 416
            +   L                 L L +       Q PD       L H+ I +     +
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 417 LPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS 476
           LP  M      L  + ++ N     + +SIA +  LR L +             LT    
Sbjct: 119 LPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP--------ELTE--- 165

Query: 477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS 536
                L +          +  L  LQ L LE       +   +   + L  L++ ++ LS
Sbjct: 166 -----LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 537 GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSV 596
             +   + +L  LE L +                            L  +       + +
Sbjct: 220 -ALGPAIHHLPKLEELDLRGC-----------------------TALRNYPPIFGGRAPL 255

Query: 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656
           + L L+  S    +P+ + R + L  LDLR       +P  I +      +L+  +    
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 657 QIPNQICQLTGL 668
              ++       
Sbjct: 316 LDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 33/257 (12%), Positives = 65/257 (25%), Gaps = 59/257 (22%)

Query: 632 GVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITL 691
           G   H  +  S    L  +G+       + + Q       D +             N   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNN 57

Query: 692 WSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN 751
             +       L+          + +                                   
Sbjct: 58  PQIETRTGRALKAT-------ADLLEDATQPGR--------------------------- 83

Query: 752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM 811
                        V L+L    L  + P +   L  +  + +    L   +P++      
Sbjct: 84  -------------VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAG 128

Query: 812 IESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK-GQFATFDESSYRGNLHL 870
           +E+L L+ N L   +P  +  LN L   ++        +P+         E     NL  
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ- 186

Query: 871 CGPTINKSCNGVEEIPA 887
              ++     G+  +PA
Sbjct: 187 ---SLRLEWTGIRSLPA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 39/269 (14%), Positives = 77/269 (28%), Gaps = 68/269 (25%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
           + S  E+LY Q ++   P    L +       D      +    +     +N +     G
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTG 65

Query: 652 NNLEGQIPNQI--CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVE 709
             L+    + +      G   ++L         P     ++           L+H+    
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS----------HLQHM---- 109

Query: 710 RLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL 769
            +D   +     +M    Q +           L                        L L
Sbjct: 110 TIDAAGLMELPDTM---QQFAG----------LET----------------------LTL 134

Query: 770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMI---------ESLDLSHN 820
           + N L   +P+ I  L  +  L++        +PE  ++             +SL L   
Sbjct: 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 821 RLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
            +   +P  +  L  L +  +  + LS L
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 16/155 (10%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
           LQSL L       +  +     + +L+ LK L +  +    ++   ++ L  L  L LR 
Sbjct: 185 LQSLRLEWTGIRSLPAS-----IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 191 NNIQGSRTK--QGLSKLKNLEALDLSSNFINGSLES--QGICELKNLFVLNLEKNNIEDH 246
                +             L+ L L       +L +    I  L  L  L+L        
Sbjct: 239 CT---ALRNYPPIFGGRAPLKRLILKDC---SNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL 281
           LP+ +  +    ++ +  +  +           + 
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 9e-25
 Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 13/237 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           ++   L L ENNIQ  +       L +LE L L  N I   +E      L +L  L L  
Sbjct: 75  SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N +          +++L+ L +  N +        + + SL  L L +          + 
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDL 359
                L+ L L    N+  +      P   L+ L +       I P   H    LK L +
Sbjct: 193 EGLFNLKYLNLG-MCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 360 SHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD---KHDFLHHLDISSNNF 413
            ++ +       A      L  L L +N+ +    LP D      +L  L +  N +
Sbjct: 250 MNSQVS-LIERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 2e-23
 Identities = 56/264 (21%), Positives = 94/264 (35%), Gaps = 37/264 (14%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
               + L+L  N+ + +  +                                L  L  L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----------------------------FRHLHHLEVLQ 105

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L  N+I+        + L +L  L+L  N++   + S     L  L  L L  N IE   
Sbjct: 106 LGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIP 163

Query: 248 PNCLNNMTRLKVLDIS-FNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
               N +  L  LD+    +L          L +L+YL L   N +    + +L     L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGL 220

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLD 365
           E L +S  N+  +++  +F     LK L + N  +++I          L  L+L+HN+L 
Sbjct: 221 EELEMS-GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 366 GAFPTWALQNNTKLEVLLLTNNSF 389
            + P         L  L L +N +
Sbjct: 280 -SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 7e-20
 Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 15/221 (6%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            +    F     L+ L L  NS   +           L  L  L L  N         F 
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAF- 143

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
               L+ L  L LR N I+ S      +++ +L  LDL        +       L NL  
Sbjct: 144 --EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTF 295
           LNL   NI+  +PN L  +  L+ L++S N      P     L+SL+ L + ++      
Sbjct: 201 LNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LI 257

Query: 296 PLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
             ++    + L  L L+  NN+  +  + F P   L  L L
Sbjct: 258 ERNAFDGLASLVELNLA-HNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 20/259 (7%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
           Q   +      L+ +P  +    + +YL+L  N++         ++   LEVL L  NS 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 390 TGNLQLPD---DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI 446
               Q+     +    L+ L++  N  T  +P      L KL  + + NN  E +I S  
Sbjct: 112 R---QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 447 -AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505
              +  L  LDL +      +S       F+L +L L   N   +  P    L  L+ L 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELE 224

Query: 506 LENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNI 563
           +  N F  +I  G       L +L + ++ +S  I       L+ L  L ++ N    ++
Sbjct: 225 MSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 564 PVQLLNH-RRLQLFSVSEN 581
           P  L    R L    +  N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN----YFDDSIF 174
            +    F    +L+ L L NN  E +           +  L  L+LG      Y  +  F
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF 234
                L +L  L L   NI   +    L+ L  LE L++S N     +       L +L 
Sbjct: 193 ---EGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLK 245

Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
            L +  + +     N  + +  L  L+++ N LS     + + L  L  L L  N +
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 29/264 (10%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
              +  +    + ++PQ +    + L   ++  N+ +   A +   +  L  L L +N+ 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 463 SGELSAALLTSCFSLLWLGLSDNN--------FYGRIFPGYMNLTQLQYLYLENNKFSGK 514
             ++         SL  L L DN         F          L++L+ L+L NN     
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY--------LSKLRELWLRNNPIE-S 161

Query: 515 IEEGLLKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLNHRR 572
           I          L+ L +       +I       L  L+ L +     + ++P  L     
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVG 219

Query: 573 LQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGF 630
           L+   +S N+       SF  +SS++ L++  + +S  I    F   ++L+ L+L  N  
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNL 278

Query: 631 SGVIPHQINECSNLRFLLLRGNNL 654
           S +          L  L L  N  
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 7/229 (3%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENN 509
             R+L+L +NN    + A        L  L L  N+   +I  G +  L  L  L L +N
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDN 133

Query: 510 KFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
             +  I  G  +   KL EL + +N +     +    +  L  L + +      I     
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 569 NH-RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRD 627
                L+  ++    +      +  +  +E L +  N      P +    S+L  L + +
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 628 NGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
           +  S +  +  +  ++L  L L  NNL     +    L  L  + L HN
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 52/261 (19%), Positives = 88/261 (33%), Gaps = 53/261 (20%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           S+  +L L +N++            +L  L L  N    +     N  ++L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 654 LEGQIPNQI-CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLD 712
           L   IP+     L+ L  + L +N         F  +            L  L       
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP----------SLMRL------- 176

Query: 713 VNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCN 772
                     + ++ +L     G F                       L  +  L+L   
Sbjct: 177 ---------DLGELKKLEYISEGAF---------------------EGLFNLKYLNLGMC 206

Query: 773 KLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK-LT 831
            +  ++P+ +  L  +  L MS N   E  P SF  L  ++ L + ++++S  I      
Sbjct: 207 NIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFD 263

Query: 832 ELNFLSNFNVSYNNLSGLIPD 852
            L  L   N+++NNLS L  D
Sbjct: 264 GLASLVELNLAHNNLSSLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 767 LDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
           +  +   L+ E+P  I    +    LN+  N +     ++F +L  +E L L  N +  Q
Sbjct: 59  VVCTRRGLS-EVPQGIPSNTR---YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-Q 113

Query: 826 IPPK-LTELNFLSNFNVSYNNLSGLIPD 852
           I       L  L+   +  N L+ +   
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSG 141

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (260), Expect = 4e-24
 Identities = 59/276 (21%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            ++ S       LQ+L L++N    + E+    +  SL  L+ L+L YN       S F 
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYLSNLSSSWF- 120

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
               L+SLT L L  N  +        S L  L+ L + +      ++ +    L  L  
Sbjct: 121 --KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSII-SNLTSLEYLALFDNNFEGT 294
           L ++ ++++ + P  L ++  +  L +   Q       I     +S+E L L D + + T
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD-T 236

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDL 354
           F  S L+                   +T + +  F  + +++ + SL  +   L     L
Sbjct: 237 FHFSELST-----------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
             L+ S N L    P       T L+ + L  N + 
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 57/306 (18%), Positives = 112/306 (36%), Gaps = 46/306 (15%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
            +++LDLS+N I   + +  +    NL  L L  N I     +  +++  L+ LD+S+N 
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFL 326
           LS    S    L+SL +L L  N ++     S  ++ +KL++L +   +   ++Q ++F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 327 PTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLT 385
               L+ L +    L    P  L     + +L L             +   + +E L L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 386 NNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS 445
           +                 H  ++S+         +  I       + +++      +   
Sbjct: 231 DTDLDTF-----------HFSELSTGET------NSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505
           + ++  L  L+ S+N                     + D  F          LT LQ ++
Sbjct: 273 LNQISGLLELEFSRNQLKS-----------------VPDGIFD--------RLTSLQKIW 307

Query: 506 LENNKF 511
           L  N +
Sbjct: 308 LHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 51/267 (19%), Positives = 103/267 (38%), Gaps = 14/267 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
            ++ +L L  N I        L +  NL+AL L+SN IN ++E      L +L  L+L  
Sbjct: 52  EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSII-SNLTSLEYLALFDNNFEGTFPLSS 299
           N + +   +    ++ L  L++  N       + + S+LT L+ L + + +         
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 300 LANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLD 358
            A  + LE L +   +++   + ++      +  L L      ++    +     ++ L+
Sbjct: 170 FAGLTFLEELEID-ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 359 LSHNDLDG-------AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN 411
           L   DLD           T +L        + +T+ S    +    ++   L  L+ S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 412 NFTGKLPQDMGIILQKLLYMDMSNNHF 438
                +P  +   L  L  + +  N +
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 48/271 (17%), Positives = 97/271 (35%), Gaps = 23/271 (8%)

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
            +  L+L  N I     + L     L+ L ++ N ++       S+L SLE+L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQV--QTENFLPTFQLKVLRL-PNCSLNVIPPFL 348
                 S     S L  L L    N  +   +T  F    +L++LR+    +   I    
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLL--GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 349 LHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--------K 399
                 L+ L++  +DL  ++   +L++   +  L+L          L +         +
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDVTSSVE 225

Query: 400 HDFLHHLDISSNNFTG--KLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDL 457
              L   D+ + +F+       +  I       + +++      +   + ++  L  L+ 
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

Query: 458 SKNNFSGELSAALLTSCFSLLWLGLSDNNFY 488
           S+N     +   +     SL  + L  N + 
Sbjct: 285 SRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 39/287 (13%)

Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNN 412
            +K LDLS+N +        LQ    L+ L+LT+N                    I  ++
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN----------------TIEEDS 95

Query: 413 FTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLT 472
           F+          L  L ++D+S N+     +S    +  L FL+L  N +      +L +
Sbjct: 96  FSS---------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 473 SCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRM 530
               L  L + + + + +I    +  LT L+ L ++ +      E   LKS + +  L +
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLIL 205

Query: 531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQL--------LNHRRLQLFSVSENY 582
                   +  ++   S +E L +     +     +L        +     +   +++  
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDN 628
           L   M     IS +  L   +N L   +P  +F   ++L  + L  N
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 41/253 (16%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLYLEN 508
            ++ LDLS N  +  +S + L  C +L  L L+ N             +L  L++L L  
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSY 109

Query: 509 NKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPH--WMGNLSYLEVLLMSKNFFEGNIPV 565
           N  S  +     K    L  L +  N     +       +L+ L++L +        I  
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 566 QLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL 625
           +                          ++ +E L +  + L    P +L    N+  L L
Sbjct: 168 KDFA----------------------GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC--------QLTGLGMMDLSHNK 677
                  ++   ++  S++  L LR  +L+    +++         +      + ++   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 678 FNGSIPSCFTNIT 690
               +      I+
Sbjct: 266 LF-QVMKLLNQIS 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 50/354 (14%), Positives = 100/354 (28%), Gaps = 98/354 (27%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
             ++ L L NN+ +  I    L+    L  L ++SN ++                     
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN--------------------- 89

Query: 558 FFEGNIPVQLLNH-RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALF 615
                I     +    L+   +S NYLS   ++ F  +SS+  L L  N        +LF
Sbjct: 90  ----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 616 RS-SNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDL 673
              + L  L + +      I  +     + L  L +  ++L+   P  +  +  +  + L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 674 SHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE 733
              +    +   F               ++  + VE L++          LD    S   
Sbjct: 206 HMKQHI-LLLEIF---------------VDVTSSVECLELRDTD------LDTFHFSELS 243

Query: 734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNM 793
            G                     +         + ++   L                   
Sbjct: 244 TGETN------------------SLIKKFTFRNVKITDESLF------------------ 267

Query: 794 SHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK-LTELNFLSNFNVSYNNL 846
                   + +  + +  +  L+ S N+L   +P      L  L    +  N  
Sbjct: 268 -------QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 40/265 (15%), Positives = 82/265 (30%), Gaps = 62/265 (23%)

Query: 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLG 669
           IP  L     + +LDL +N  + +    +  C NL+ L+L  N +     +    L  L 
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 670 MMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLEHLTFVERLDVNSI------------ 716
            +DLS+N    ++ S  F  ++           L  L     L  N              
Sbjct: 104 HLDLSYNYL-SNLSSSWFKPLS----------SLTFL----NLLGNPYKTLGETSLFSHL 148

Query: 717 -GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT 775
             +    + +M   +  +R  F                     + L ++  L++  + L 
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDF---------------------AGLTFLEELEIDASDLQ 187

Query: 776 GEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG----QIPP-- 828
                +    +Q +  L +        +         +E L+L    L      ++    
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 829 --KLTELNFLSNFNVSYNNLSGLIP 851
              L +     N  ++  +L  ++ 
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
           LDLS N++T    S++     +  L ++ N ++    +SFS+L  +E LDLS+N LS  +
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NL 115

Query: 827 PP----KLTELNFLSNFNVSYNNLSGLIPDKGQFA 857
                  L+ L FL   N+  N     + +   F+
Sbjct: 116 SSSWFKPLSSLTFL---NLLGNPYKT-LGETSLFS 146

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  105 bits (265), Expect = 4e-24
 Identities = 87/465 (18%), Positives = 156/465 (33%), Gaps = 72/465 (15%)

Query: 129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD----SIFLYLNALTSLT 184
            ++QSLD+         + +  + L  L++ +++ L      +     I   L    +L 
Sbjct: 3   LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 185 TLILRENNIQGSRTKQGLSKLKN----LEALDLSSNFINGSLESQGICEL----KNLFVL 236
            L LR N +        L  L+     ++ L L +  +        +         L  L
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQEL 118

Query: 237 NLEKNNIED----HLPNCL-NNMTRLKVLDISFNQLS----GSFPSIISNLTSLEYLALF 287
           +L  N + D     L   L +   RL+ L + +  LS        S++      + L + 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 288 DNNF--EGTFPLSSLANHSKLEVLLLSTRNNML-----QVQTENFLPTFQLKVLRLPNCS 340
           +N+    G   L      S  ++  L   +  +     +           L+ L L +  
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 341 L-----NVIPPFLLH-QFDLKYLDLSHNDLDGAFPTW---ALQNNTKLEVLLLTNNSFT- 390
           L       + P LLH    L+ L +    +           L+    L+ L L  N    
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 391 -GNLQLPD---DKHDFLHHLDISSNNFTGKLPQDMGIILQK---LLYMDMSNNHFEGNIA 443
            G   L +   +    L  L + S +FT         +L +   LL + +SNN  E    
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 444 SSIAEM-----KELRFLDLSKNNFSGELSAAL---LTSCFSLLWLGLSDNNFYGRIFPGY 495
             + +        LR L L+  + S    ++L   L +  SL  L LS+N   G    G 
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GD--AGI 415

Query: 496 MNL--------TQLQYLYLENNKFSGK----IEEGLLKSKKLVEL 528
           + L          L+ L L +  +S +    ++        L  +
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  103 bits (259), Expect = 2e-23
 Identities = 77/398 (19%), Positives = 128/398 (32%), Gaps = 67/398 (16%)

Query: 117 VLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLY 176
           V  +   L  P  ++Q L L N    G        TL +L  L+ L+L  N   D+    
Sbjct: 73  VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132

Query: 177 L-----NALTSLTTLILRENNIQGSRTK---QGLSKLKNLEALDLSSNFINGSLESQGIC 228
           L     +    L  L L   ++  +  +     L    + + L +S+N I      + +C
Sbjct: 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLC 191

Query: 229 E-LK----NLFVLNLEKNNIED----HLPNCLNNMTRLKVLDISFNQLSGS-----FPSI 274
           + LK     L  L LE   +       L   + +   L+ L +  N+L         P +
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251

Query: 275 ISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLLSTRNNMLQVQTENFLPTFQL 331
           +   + L  L +++     +G   L   L     L+ L L+   N L  +    L     
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA--GNELGDEGARLL----C 305

Query: 332 KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL--DGAFP-TWALQNNTKLEVLLLTNNS 388
           + L  P C              L+ L +             +  L  N  L  L ++NN 
Sbjct: 306 ETLLEPGCQ-------------LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 389 FTGN--------LQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK---LLYMDMSNNH 437
                       L  P      L  L ++  + +      +   L     L  +D+SNN 
Sbjct: 353 LEDAGVRELCQGLGQPGSV---LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 438 FEGNIASSIAEMKE-----LRFLDLSKNNFSGELSAAL 470
                   + E        L  L L    +S E+   L
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  101 bits (255), Expect = 7e-23
 Identities = 78/411 (18%), Positives = 135/411 (32%), Gaps = 57/411 (13%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL----KNLFVL 236
             + +L ++   +  +R  + L  L+  + + L    +      + I         L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAEL 61

Query: 237 NLEKNNIED----HLPNCL-NNMTRLKVLDISFNQLS----GSFPSIISNLTSLEYLALF 287
           NL  N + D     +   L     +++ L +    L+    G   S +  L +L+ L L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 288 DNNF--EGTFPLSS--LANHSKLEVLLLSTRNNMLQVQTENFLPTFQ----LKVLRLPNC 339
           DN     G   L    L    +LE L L    ++     E      +     K L + N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLE-YCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 340 SLN-----VIPPFLLH-QFDLKYLDLSHNDL--DGAFP-TWALQNNTKLEVLLLTNNSFT 390
            +N     V+   L      L+ L L    +  D        + +   L  L L +N   
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 391 GN-----LQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK---LLYMDMSNNHFEGNI 442
                            L  L I     T K   D+  +L+    L  + ++ N      
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 443 ASSIAEM-----KELRFLDLSKNNFSGELSAAL---LTSCFSLLWLGLSDNNFYG----R 490
           A  + E       +L  L +   +F+    +     L     LL L +S+N         
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 491 IFPG-YMNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLS 536
           +  G     + L+ L+L +   S      +   LL +  L EL +S+N L 
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.9 bits (229), Expect = 1e-19
 Identities = 86/457 (18%), Positives = 145/457 (31%), Gaps = 81/457 (17%)

Query: 257 LKVLDISFNQLS-GSFPSIISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLLS 312
           ++ LDI   +LS   +  ++  L   + + L D          +SS L  +  L  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 313 TRNNMLQVQTENFL------PTFQLKVLRLPNCSL-----NVIPPFLLHQFDLKYLDLSH 361
             +N L     + +      P+ +++ L L NC L      V+   L     L+ L LS 
Sbjct: 65  --SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 362 NDL-DGAFPTWA---LQNNTKLEVLLLTNNSFTGN------LQLPDDKHDFLHHLDISSN 411
           N L D          L    +LE L L   S +          L          L +S+N
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNN 180

Query: 412 NFTGKLPQDMGIILQ----KLLYMDMSNNHFEGNIASSIAEM----KELRFLDLSKNNFS 463
           +      + +   L+    +L  + + +     +    +  +      LR L L  N   
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 464 GE----LSAALLTSCFSLLWLGLSDNNF----YGRIFPGYMNLTQLQYLYLENNKFSGK- 514
                 L   LL     L  L + +        G +         L+ L L  N+   + 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 515 ---IEEGLLK-SKKLVELRMSSNMLSG----HIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
              + E LL+   +L  L + S   +     H    +    +L  L +S N    +  V+
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVR 359

Query: 567 LLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS----GPIPIALFRSSNLLT 622
            L                         S +  L+L    +S      +   L  + +L  
Sbjct: 360 EL----------------CQGLGQPG-SVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 623 LDLRDNGFSGVIPHQINE-----CSNLRFLLLRGNNL 654
           LDL +N        Q+ E        L  L+L     
Sbjct: 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.4 bits (212), Expect = 2e-17
 Identities = 66/385 (17%), Positives = 124/385 (32%), Gaps = 65/385 (16%)

Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF---------L 403
           D++ LD+   +L  A     L    + +V+ L +   T          D          L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-----EARCKDISSALRVNPAL 58

Query: 404 HHLDISSNNFTGKLPQDMGIILQ----KLLYMDMSNNHFEGNIASSIAEM----KELRFL 455
             L++ SN         +   LQ    K+  + + N    G     ++        L+ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 456 DLSKNNFSGE----LSAALLTSCFSLLWLGLSDNNFYGR----IFPGYMNLTQLQYLYLE 507
            LS N         L   LL     L  L L   +        +          + L + 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 508 NNKFSGK----IEEGLLKSK-KLVELRMSSNMLS----GHIPHWMGNLSYLEVLLMSKNF 558
           NN  +      + +GL  S  +L  L++ S  ++      +   + + + L  L +  N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 559 FEGNIPVQLL------NHRRLQLFSVSENYLS--GFMTTSFNI---SSVEHLYLQKNSLS 607
             G++ +  L         RL+   + E  ++  G       +    S++ L L  N L 
Sbjct: 239 L-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 608 GPIPIALFRS-----SNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQI 658
                 L  +       L +L ++   F+          + +   L  L +  N LE   
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357

Query: 659 PNQICQL-----TGLGMMDLSHNKF 678
             ++CQ      + L ++ L+    
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 61/303 (20%), Positives = 98/303 (32%), Gaps = 48/303 (15%)

Query: 108 SKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN 167
           S N      V  L   L     +L++L L +              + S   L+ L LG N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 168 YFDDSIFLYL-----NALTSLTTLILRENNIQGSRTK---QGLSKLKNLEALDLSSNFIN 219
              D     L     +  + L TL + E  I         + L   ++L+ L L+ N + 
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL- 296

Query: 220 GSLESQGICEL-----KNLFVLNLEKNNIED----HLPNCLNNMTRLKVLDISFNQLSGS 270
           G   ++ +CE        L  L ++  +       H  + L     L  L IS N+L  +
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 271 -----FPSIISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLLSTRNNMLQVQT 322
                   +    + L  L L D +        L++ L  +  L  L LS  NN L    
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS--NNCLGDAG 414

Query: 323 ENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTW---ALQNNTKL 379
              L    ++ +R P C              L+ L L                 ++   L
Sbjct: 415 ILQL----VESVRQPGCL-------------LEQLVLYDIYWSEEMEDRLQALEKDKPSL 457

Query: 380 EVL 382
            V+
Sbjct: 458 RVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 66/409 (16%), Positives = 118/409 (28%), Gaps = 92/409 (22%)

Query: 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR----IFPGYMNLTQLQYLY 505
            +++ LD+     S    A LL        + L D          I         L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 506 LENNKFSGK----IEEGLLKSK-KLVELRMSSNMLS----GHIPHWMGNLSYLEVLLMSK 556
           L +N+        + +GL     K+ +L + +  L+    G +   +  L  L+ L +S 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS----GPIPI 612
           N   G+  +QLL    L                      +E L L+  SLS     P+  
Sbjct: 123 NLL-GDAGLQLLCEGLLD-----------------PQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 613 ALFRSSNLLTLDLRDNGFSGVIPHQINEC-----SNLRFLLLRGNNLEGQ----IPNQIC 663
            L    +   L + +N  +      + +        L  L L    +       +   + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 664 QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSM 723
               L  + L  NK                +  L    L   + +  L +   GI     
Sbjct: 225 SKASLRELALGSNKLGDV-----------GMAELCPGLLHPSSRLRTLWIWECGITAKGC 273

Query: 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG 783
            D+ ++                  +           +L     L L+ N+L  E    + 
Sbjct: 274 GDLCRV------------------LRAK-------ESLKE---LSLAGNELGDEGARLLC 305

Query: 784 ELQEIP-----VLNMSHNFLS----ESIPESFSNLKMIESLDLSHNRLS 823
           E    P      L +     +           +  + +  L +S+NRL 
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 1e-23
 Identities = 64/317 (20%), Positives = 105/317 (33%), Gaps = 51/317 (16%)

Query: 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
            +   LDL +N I+  L       L++L+ L L  N I        + + +L+ L IS N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQT--E 323
            L    P  +   +SL  L + DN      P    +    +  + +    N L+      
Sbjct: 113 HLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMG--GNPLENSGFEP 166

Query: 324 NFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLL 383
                 +L  LR+    L  IP  L     L  L L HN +  A     L   +KL  L 
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLG 223

Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
           L +N                    I + + +          L  L  + + NN     + 
Sbjct: 224 LGHNQIR----------------MIENGSLSF---------LPTLRELHLDNNKLS-RVP 257

Query: 444 SSIAEMKELRFLDLSKNN--------FSGELSAALLTSCFSLLWLGLSDNNF-YGRIFPG 494
           + + ++K L+ + L  NN        F                 + L +N   Y  + P 
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA---YYNGISLFNNPVPYWEVQPA 314

Query: 495 -YMNLTQLQYLYLENNK 510
            +  +T    +   N K
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 22/277 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
            L    F   + L +L L NN    ++E         L++L+ L +  N+  +   +  N
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHLVE---IPPN 120

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
             +SL  L + +N I+    K   S L+N+  +++  N +  S    G  +   L  L +
Sbjct: 121 LPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
            +  +   +P   +    L  L +  N++       +   + L  L L  N         
Sbjct: 180 SEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENG 235

Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP-------FLLHQ 351
           SL+    L  L L   NN L            L+V+ L   ++  +         F + +
Sbjct: 236 SLSFLPTLRELHLD--NNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 352 FDLKYLDLSHNDLD-GAFPTWALQNNTKLEVLLLTNN 387
                + L +N +          +  T    +   N 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 60/319 (18%), Positives = 106/319 (33%), Gaps = 51/319 (15%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNALTSLT 184
             +   LDL NN    + ++        L+ L  L L  N      +  F   + L  L 
Sbjct: 53  SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAF---SPLRKLQ 105

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
            L + +N++             +L  L +  N I   +       L+N+  + +  N +E
Sbjct: 106 KLYISKNHLVEIPPNL----PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 245 DHL--PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLAN 302
           +    P   + + +L  L IS  +L+   P       +L  L L  N  +    L  L  
Sbjct: 161 NSGFEPGAFDGL-KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLR 215

Query: 303 HSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN 362
           +SKL  L L   N +  ++  +      L+ L L N  L+ +P  L     L+ + L  N
Sbjct: 216 YSKLYRLGLG-HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274

Query: 363 DL----DGAF-PTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
           ++       F P            + L NN               + + ++    F    
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNN--------------PVPYWEVQPATFRC-- 318

Query: 418 PQDMGIILQKLLYMDMSNN 436
                  +   L +   N 
Sbjct: 319 -------VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 55/238 (23%), Positives = 85/238 (35%), Gaps = 13/238 (5%)

Query: 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLEN 508
            +   LDL  N+ S EL          L  L L +N    +I    +  L +LQ LY+  
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISK 111

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN-FFEGNIPVQL 567
           N    +I   L  S  LVELR+  N +          L  +  + M  N           
Sbjct: 112 NHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 568 LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLR 626
            +  +L    +SE  L+G         ++  L+L  N +   I +      S L  L L 
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLG 225

Query: 627 DNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
            N    +    ++    LR L L  N L  ++P  +  L  L ++ L  N     +  
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 51/277 (18%), Positives = 93/277 (33%), Gaps = 36/277 (12%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
                L LQ N +S           +L  L L +N  S +     +    L+ L +  N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDV 713
           L  +IP  +   + L  + +  N+        F+              L ++  +E    
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSG-------------LRNMNCIE---- 153

Query: 714 NSIGIYYSSMLDMGQLSSEERGPFTFDYL-VEVEFVTKNRYEVYNGSNLDYMVGLDLSCN 772
                     +    L +    P  FD L +    +++ +         + +  L L  N
Sbjct: 154 ----------MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203

Query: 773 KLTGEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831
           K+   I  E      ++  L + HN +      S S L  +  L L +N+LS ++P  L 
Sbjct: 204 KIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 832 ELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNL 868
           +L  L    +  NN++ +      F        R   
Sbjct: 262 DLKLLQVVYLHTNNITKV--GVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 55/336 (16%), Positives = 103/336 (30%), Gaps = 71/336 (21%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
                L L+NN  S ++ +   K  + L  L + +N +S         L  L+ L +SKN
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 558 FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSL-SGPIPIALF 615
                IP  L     L    + +N +       F  + ++  + +  N L +       F
Sbjct: 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 616 RSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTGLGMMDLS 674
               L  L + +   +G IP  +     L  L L  N ++  I  +     + L  + L 
Sbjct: 170 DGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 675 HNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEER 734
           HN+          N +L  +  L             L            LD  +LS    
Sbjct: 226 HNQ-----IRMIENGSLSFLPTL-----------RELH-----------LDNNKLSRVPA 258

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-------GELQE 787
           G      L                        + L  N +T ++            +   
Sbjct: 259 GLPDLKLLQV----------------------VYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 788 IPVLNMSHNFLSESI--PESFSNLKMIESLDLSHNR 821
              +++ +N +      P +F  +    ++   + +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 4e-23
 Identities = 74/350 (21%), Positives = 119/350 (34%), Gaps = 50/350 (14%)

Query: 227 ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
            C      VLN+ ++ +   LP+CL     +  L I  N L+ S P++   L +LE   +
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---V 88

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
             N    + P        +L +         L       LP+  L  L +    L  +P 
Sbjct: 89  SGNQLT-SLP-VLPPGLLELSIFSNP--LTHLPA-----LPS-GLCKLWIFGNQLTSLPV 138

Query: 347 FLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHL 406
                  L+ L +S N L  + P       ++L  L   NN  T    LP      L  L
Sbjct: 139 LPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLPMLP-SGLQEL 186

Query: 407 DISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI-AEMKELRFLDLSKNNFSGE 465
            +S N     LP        +L  +   NN       +S+ A    L+ L +S N  +  
Sbjct: 187 SVSDNQLA-SLPTLPS----ELYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLT-- 234

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525
              +L      L  L +S N       P  M  + L  L +  N+ + ++ E L+     
Sbjct: 235 ---SLPVLPSELKELMVSGNRL--TSLP--MLPSGLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL 575
             + +  N LS      +  ++           F+          R L L
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 1e-22
 Identities = 63/337 (18%), Positives = 104/337 (30%), Gaps = 54/337 (16%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
             EL++L++S N    +           L  L I +    +            + L  L 
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPAL-------PSGLCKLW 127

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           +  N +              L+ L +S N +  SL      EL  L+  N   N +   L
Sbjct: 128 IFGNQLTSLP-----VLPPGLQELSVSDNQLA-SL-PALPSELCKLWAYN---NQLT-SL 176

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANH-SKL 306
           P   +    L+ L +S NQL+ S P++ S L  L     ++N       L+SL    S L
Sbjct: 177 PMLPSG---LQELSVSDNQLA-SLPTLPSELYKLW---AYNNR------LTSLPALPSGL 223

Query: 307 EVLLLSTRNNMLQVQTENFLPTF--QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL 364
           + L++S   N L       LP    +LK L +    L  +P        L  L +  N L
Sbjct: 224 KELIVS--GNRLTS-----LPVLPSELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQL 273

Query: 365 DGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII 424
               P  +L + +    + L  N  +   +        +      S              
Sbjct: 274 T-RLPE-SLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAP 328

Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNN 461
            +       + +          A            N 
Sbjct: 329 RETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 73/415 (17%), Positives = 131/415 (31%), Gaps = 64/415 (15%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
              + +L + +N+   +              L+ L +  N    S+ +    L  L+   
Sbjct: 60  PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQL-TSLPVLPPGLLELSIFS 110

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
               ++              L  L +  N +  SL          L  L++  N +   L
Sbjct: 111 NPLTHLPAL--------PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SL 156

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
           P   +    L  L    NQL+ S P + S L  L    + DN    + P +  +   KL 
Sbjct: 157 PALPSE---LCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA-SLP-TLPSELYKLW 207

Query: 308 VLLLSTRNNMLQVQTENFLPTF--QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365
                  NN L       LP     LK L +    L  +P        LK L +S N L 
Sbjct: 208 AY-----NNRL-----TSLPALPSGLKELIVSGNRLTSLPVLPSE---LKELMVSGNRLT 254

Query: 366 GAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD--KHDFLHHLDISSNNFTGKLPQDMGI 423
            + P       + L  L +  N  T   +LP+          +++  N  + +       
Sbjct: 255 -SLPMLP----SGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNPLS-ERTLQALR 305

Query: 424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS 483
            +            F+   AS+  E    R L L+  ++                  G  
Sbjct: 306 EITSAPGYSGPIIRFDMAGASAPRET---RALHLAAADWLVPAREGEPAPADRWHMFGQE 362

Query: 484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGH 538
           DN      F  +++       ++++  F  +I   L +  +   LR ++  ++  
Sbjct: 363 DNA---DAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATE 414

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 67/345 (19%), Positives = 119/345 (34%), Gaps = 46/345 (13%)

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
              L++  + L    P     +   +  L++ +N+ T    LP      L  L++S N  
Sbjct: 42  NAVLNVGESGL-TTLPDCLPAH---ITTLVIPDNNLT---SLPAL-PPELRTLEVSGNQL 93

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
           T  LP      L +L        H     +        L  L +  N  +     +L   
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-----SLPVL 139

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533
              L  L +SDN       P     ++L  L+  NN+ +  +         L EL +S N
Sbjct: 140 PPGLQELSVSDNQL--ASLPA--LPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 534 MLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI 593
            L+  +P     L  L       N    ++P      + L +   S N L+         
Sbjct: 192 QLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLKELIV---SGNRLTSL---PVLP 240

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           S ++ L +  N L+  +P+     S LL+L +  N  +  +P  +   S+   + L GN 
Sbjct: 241 SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLD 698
           L  +    + ++T          +F+ +  S         +   D
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 9e-20
 Identities = 65/398 (16%), Positives = 122/398 (30%), Gaps = 78/398 (19%)

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE 239
                 L + E+ +    T        ++  L +  N +  SL +        L  L + 
Sbjct: 39  NNGNAVLNVGESGL----TTLPDCLPAHITTLVIPDNNLT-SLPA----LPPELRTLEVS 89

Query: 240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSS 299
            N +   LP     +  L +       L    P++ S L  L    +F N    + P   
Sbjct: 90  GNQLTS-LPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLT-SLP-VL 139

Query: 300 LANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDL 359
                                          L+ L + +  L  +P        L  L  
Sbjct: 140 PPG----------------------------LQELSVSDNQLASLPALPSE---LCKLWA 168

Query: 360 SHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ 419
            +N L  + P       + L+ L +++N       LP    + L+ L   +N  T  LP 
Sbjct: 169 YNNQLT-SLPM----LPSGLQELSVSDNQLA---SLPTLPSE-LYKLWAYNNRLT-SLPA 218

Query: 420 DMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLW 479
                   L  + +S N     + S      EL+ L +S N  +     +L      LL 
Sbjct: 219 LPS----GLKELIVSGNR----LTSLPVLPSELKELMVSGNRLT-----SLPMLPSGLLS 265

Query: 480 LGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN-MLSGH 538
           L +  N    R+    ++L+    + LE N  S +  +     +++      S  ++   
Sbjct: 266 LSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPIIRFD 321

Query: 539 IPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLF 576
           +           + L + ++       +     R  +F
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 3e-19
 Identities = 69/360 (19%), Positives = 122/360 (33%), Gaps = 76/360 (21%)

Query: 498 LTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
                 L +  +  +  + + L     +  L +  N L+  +P     L  LEV   S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLEV---SGN 91

Query: 558 FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS 617
               ++PV       L +FS    +L          S +  L++  N L+  +P+     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTS-LPVLP--- 140

Query: 618 SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK 677
             L  L + DN  +  +P      S L  L    N L   +P     L  L    +S N+
Sbjct: 141 PGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQ 192

Query: 678 FNGSIPSCFTNIT-LWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLD--MGQLSSEER 734
              S+P+  + +  LW+  N         + ++ L V+   +   + L     +L     
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL---TSLPVLPSELKE--- 245

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS 794
                                           L +S N+LT  +P     L     L++ 
Sbjct: 246 --------------------------------LMVSGNRLT-SLPMLPSGLLS---LSVY 269

Query: 795 HNFLSESIPESFSNLKMIESLDLSHNRLS---GQIPPKLTELNFLSNFNVSYNNLSGLIP 851
            N L+  +PES  +L    +++L  N LS    Q   ++T     S   + ++      P
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 69/314 (21%), Positives = 115/314 (36%), Gaps = 57/314 (18%)

Query: 549 LEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
             VL + ++     +P  L  H  +    + +N L+           +  L +  N L+ 
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLTSL---PALPPELRTLEVSGNQLTS 95

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668
            +P+       L            +        S L  L + GN L   +P     L  L
Sbjct: 96  -LPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPGLQEL 146

Query: 669 GMMDLSHNKFNGSIPSCFTNIT-LWSVGNLDRYRLEHL----TFVERLDVNSIGIYYSSM 723
               +S N+   S+P+  + +  LW+  N    +L  L    + ++ L V+         
Sbjct: 147 ---SVSDNQLA-SLPALPSELCKLWAYNN----QLTSLPMLPSGLQELSVSDN------- 191

Query: 724 LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG--SNLDYMVGLDLSCNKLTGEIPSE 781
               QL+S    P     L ++     NR        S L     L +S N+LT  +P  
Sbjct: 192 ----QLAS---LPTLPSELYKLW-AYNNRLTSLPALPSGLKE---LIVSGNRLT-SLPVL 239

Query: 782 IGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV 841
             EL+E   L +S N L  S+P   S L    SL +  N+L+ ++P  L  L+  +  N+
Sbjct: 240 PSELKE---LMVSGNRL-TSLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 842 SYNNLSGLIPDKGQ 855
             N LS       +
Sbjct: 292 EGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 76/408 (18%), Positives = 124/408 (30%), Gaps = 80/408 (19%)

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
           +  CLNN     VL++  + L+ + P  +     +  L + DNN      L+SL      
Sbjct: 34  MRACLNN--GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN------LTSLPA---- 78

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
              L                   +L+ L +    L  +P       +L         L  
Sbjct: 79  ---LPP-----------------ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP- 117

Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ 426
                     + L  L +  N  T    LP      L  L +S N     LP      L 
Sbjct: 118 -------ALPSGLCKLWIFGNQLT---SLPVL-PPGLQELSVSDNQLA-SLPALPS-ELC 164

Query: 427 KLLYMDMSNNHFEGNIASSI-AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDN 485
           KL      NN        S+      L+ L +S N  +  L          L  L   +N
Sbjct: 165 KL---WAYNNQLT-----SLPMLPSGLQELSVSDNQLA-SLPTLP----SELYKLWAYNN 211

Query: 486 NFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGN 545
                  P     + L+ L +  N+ +  +        +L EL +S N L+  +P     
Sbjct: 212 RL--TSLPA--LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLPSG 262

Query: 546 LSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNS 605
           L  L V    +N     +P  L++       ++  N LS     +    +    Y     
Sbjct: 263 LLSLSV---YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

Query: 606 LSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
                  +  R +  L L   D     ++P +  E +      + G  
Sbjct: 319 RFDMAGASAPRETRALHLAAADW----LVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 70/406 (17%), Positives = 125/406 (30%), Gaps = 81/406 (19%)

Query: 452 LRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF 511
              L++ ++  +  L   L      +  L + DNN      P      +L+ L +  N+ 
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNL--TSLPA--LPPELRTLEVSGNQL 93

Query: 512 SGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHR 571
           +  +        +L            H+P     L  L +     N    ++PV     +
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLWI---FGNQLT-SLPVLPPGLQ 144

Query: 572 RLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS 631
            L +   S+N L+         S +  L+   N L+  +P+     S L  L + DN  +
Sbjct: 145 ELSV---SDNQLASL---PALPSELCKLWAYNNQLTS-LPMLP---SGLQELSVSDNQLA 194

Query: 632 GVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT- 690
             +P      S L  L    N L   +P     L  L    +S N+   S+P   + +  
Sbjct: 195 -SLPTLP---SELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLPSELKE 245

Query: 691 LWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSML--DMGQLSSEERGPFTFDYLVEVEFV 748
           L   GN         + +  L V    +   + L   +  LSSE                
Sbjct: 246 LMVSGNRLTSLPMLPSGLLSLSVYRNQL---TRLPESLIHLSSETT-------------- 288

Query: 749 TKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNM---SHNFLSESIPES 805
                             ++L  N L+      + E+   P  +      +    S P  
Sbjct: 289 ------------------VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 806 FSNLKMIESLDLSHNRLSGQIPPK----LTELNFLSNFNVSYNNLS 847
              L +  +  L   R     P        + +    F++  + LS
Sbjct: 331 TRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 54/237 (22%)

Query: 616 RSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH 675
            ++    L++ ++G +  +P  +   +++  L++  NNL   +P    +L  L   ++S 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---EVSG 90

Query: 676 NKFNGSIPSCFTNITLWSVGNLDRYRLEHL-TFVERLDVNSIGIYYSSMLDMGQLSSEER 734
           N+   S+P     +   S+ +     L  L + + +L +              QL+S   
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-----------QLTSLPV 138

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS 794
            P                        L     L +S N+L   +P+   EL +   L   
Sbjct: 139 LP----------------------PGLQE---LSVSDNQLA-SLPALPSELCK---LWAY 169

Query: 795 HNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
           +N L  S+P   S L+    L +S N+L+  +P   +EL  L  +N    +L  L  
Sbjct: 170 NNQL-TSLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (255), Expect = 6e-23
 Identities = 71/419 (16%), Positives = 129/419 (30%), Gaps = 51/419 (12%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
           + +         L SLD  N+S   +        +  L  L  L    N       L L+
Sbjct: 32  ATDTISEEQLATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNNITT---LDLS 82

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
             T+LT L    N +    T   ++ L  L  L+  +N     L    + +   L  LN 
Sbjct: 83  QNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTN----KLTKLDVSQNPLLTYLNC 134

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
            +N + + +   +++ T+L  LD   N+        ++  T L  L    N         
Sbjct: 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE----L 185

Query: 299 SLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLD 358
            ++ +  L  L      N +     N     QL  L   +  L  I   +     L Y D
Sbjct: 186 DVSQNKLLNRLNCD--TNNITKLDLNQNI--QLTFLDCSSNKLTEID--VTPLTQLTYFD 239

Query: 359 LSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLP 418
            S N L        +   +KL  L           ++    +  L +          +L 
Sbjct: 240 CSVNPLT----ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 419 QDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLL 478
                   +L  +D             +++  +L +L L+    + EL  +  T    L 
Sbjct: 293 VTH---NTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVSHNT---KLK 342

Query: 479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG 537
            L   + +   + F     +  L   +    +     +E L  +   + +        G
Sbjct: 343 SLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (254), Expect = 8e-23
 Identities = 71/424 (16%), Positives = 136/424 (32%), Gaps = 47/424 (11%)

Query: 146 ENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKL 205
           + Q+++                    +  +    L +LT+L    ++I       G+ KL
Sbjct: 7   QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKL 63

Query: 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
             L  L  +SN    ++ +  + +  NL  L  + N + + L   +  +T+L  L+   N
Sbjct: 64  TGLTKLICTSN----NITTLDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTN 116

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
           +L+      +S    L YL    N       +S     ++L+       +   ++   + 
Sbjct: 117 KLT---KLDVSQNPLLTYLNCARNTLT-EIDVSHNTQLTELDC------HLNKKITKLDV 166

Query: 326 LPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLT 385
            P  QL  L      +  +         L  L+   N++        L  N +L  L  +
Sbjct: 167 TPQTQLTTLDCSFNKITELDVSQNKL--LNRLNCDTNNIT----KLDLNQNIQLTFLDCS 220

Query: 386 NNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS 445
           +N  T   ++       L + D S N  T +L       L KL  +              
Sbjct: 221 SNKLT---EIDVTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLEI---D 270

Query: 446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505
           +    +L +          EL    +T    L  L          +        +L YLY
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGI-TELDLS--QNPKLVYLY 324

Query: 506 LENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPV 565
           L N + + +++       KL  L   +  +       +G +  L     ++         
Sbjct: 325 LNNTELT-ELDVSHN--TKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKE 379

Query: 566 QLLN 569
            L N
Sbjct: 380 TLTN 383

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 60/424 (14%), Positives = 133/424 (31%), Gaps = 44/424 (10%)

Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD 484
               +               S  ++  L  LD   ++ + +++   +     L  L  + 
Sbjct: 20  FASEVAAAFEMQ---ATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTS 73

Query: 485 NNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG 544
           NN            T L YL  ++NK +      +    KL  L   +N L+  +   + 
Sbjct: 74  NNITTLDLS---QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT-KLD--VS 124

Query: 545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKN 604
               L  L  ++N       + + ++ +L       N     +  +   + +  L    N
Sbjct: 125 QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFN 180

Query: 605 SLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ 664
            ++    + + ++  L  L+   N  + +    +N+   L FL    N L  +I   +  
Sbjct: 181 KITE---LDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT-EID--VTP 231

Query: 665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSML 724
           LT L   D S N       S  + +T       D   ++     + +   + G      L
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291

Query: 725 DMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGE 784
           D+   +           + E++            S    +V L L+  +LT E+   +  
Sbjct: 292 DVTHNTQLYLLDCQAAGITELDL-----------SQNPKLVYLYLNNTELT-ELD--VSH 337

Query: 785 LQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN 844
             ++  L+  +  +          +  + +   +  +        LT  +     +    
Sbjct: 338 NTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

Query: 845 NLSG 848
           +  G
Sbjct: 396 DQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 24/202 (11%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
             P  +L   D S N    +        + +L +L  L+       +   + L   T L 
Sbjct: 229 VTPLTQLTYFDCSVNPLTEL-------DVSTLSKLTTLHCIQTDLLE---IDLTHNTQLI 278

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
                         +  ++    L  LD  +  I   L+   + +   L  L L    + 
Sbjct: 279 YFQAEGCRKI---KELDVTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTELT 331

Query: 245 DHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
           + L   +++ T+LK L      +   F S +  + +L      +         +   N  
Sbjct: 332 E-LD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL 386

Query: 305 KLEVL--LLSTRNNMLQVQTEN 324
            + V   LL    N + ++  +
Sbjct: 387 TIAVSPDLLDQFGNPMNIEPGD 408

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 55/353 (15%), Positives = 112/353 (31%), Gaps = 59/353 (16%)

Query: 497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK 556
            L  L  L   N+  +     G+ K   L +L  +SN ++  +   +   + L  L    
Sbjct: 40  QLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94

Query: 557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFR 616
           N    N+ V  L    L   +   N L+           + +L   +N+L+    I +  
Sbjct: 95  NKLT-NLDVTPLTK--LTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLT---EIDVSH 146

Query: 617 SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
           ++ L  LD   N     +   +   + L  L    N +  ++   + Q   L  ++   N
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTN 201

Query: 677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP 736
                     T + L     L             LD +S  +   + +D+  L+      
Sbjct: 202 NI--------TKLDLNQNIQL-----------TFLDCSSNKL---TEIDVTPLTQ----- 234

Query: 737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN 796
                L      + N     + S L  +  L      L  EI   +    ++        
Sbjct: 235 -----LTYF-DCSVNPLTELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

Query: 797 FLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
              + +    ++   +  LD     ++ ++   L++   L    ++   L+ L
Sbjct: 286 RKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 44/304 (14%), Positives = 96/304 (31%), Gaps = 30/304 (9%)

Query: 549 LEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
               + +    +    +       L       + ++   T    ++ +  L    N+++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITT 78

Query: 609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668
              + L +++NL  L    N  + +    +   + L +L    N L       + Q   L
Sbjct: 79  ---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT---KLDVSQNPLL 129

Query: 669 GMMDLSHNKFNGSIPSCFTNITLWSVGN---LDRYRLEHLTFVERLDVNSIGIYYSSMLD 725
             ++ + N       S  T +T         + +  +   T +  LD +   I   + LD
Sbjct: 130 TYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI---TELD 186

Query: 726 MGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGEL 785
           + Q              +       N     + +    +  LD S NKLT EI   +  L
Sbjct: 187 VSQNKL-----------LNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 786 QEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNN 845
            ++   + S N L+E    + S L  +  +      +      +L          +   +
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 846 LSGL 849
           ++  
Sbjct: 293 VTHN 296

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 45/246 (18%), Positives = 90/246 (36%), Gaps = 21/246 (8%)

Query: 614 LFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDL 673
            F   N  +                 + + L  L    +++   +   I +LTGL  +  
Sbjct: 14  WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLIC 71

Query: 674 SHNKFNGSIPSCFTNITLWSVGN--LDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSS 731
           + N       S  TN+T  +  +  L    +  LT +  L+ ++  +    +     L+ 
Sbjct: 72  TSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 732 --------EERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG 783
                    E        L E++     +    + +    +  LD S NK+T     ++ 
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVS 188

Query: 784 ELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY 843
           + + +  LN   N ++  +    +    +  LD S N+L+ +I   +T L  L+ F+ S 
Sbjct: 189 QNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSV 242

Query: 844 NNLSGL 849
           N L+ L
Sbjct: 243 NPLTEL 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 1e-21
 Identities = 59/294 (20%), Positives = 103/294 (35%), Gaps = 24/294 (8%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           +    +    +  +  +N+  + V        +  L  +  L L  N   D     L  L
Sbjct: 35  DAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLTNL 86

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
            +L  L L EN I   +    L  LK L++L L  N I+   +  G+  L  L  L L  
Sbjct: 87  KNLGWLFLDENKI---KDLSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGN 140

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I D     L+ +T+L  L +  NQ+S      ++ LT L+ L L  N+      L +L
Sbjct: 141 NKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS---DLRAL 193

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
           A    L+VL L      L     +         ++  + SL   P  +    D +  ++ 
Sbjct: 194 AGLKNLDVLELF-SQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVK 251

Query: 361 HNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
            + L       +      + +            Q   + +   + +D +     
Sbjct: 252 WH-LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTK 304

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.3 bits (244), Expect = 3e-21
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 24/250 (9%)

Query: 153 LGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD 212
             +       NL      D++    N L S+  +I   ++I+   + QG+  L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 71

Query: 213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP 272
           L+ N +    + + +  LKNL  L L++N I+D L + L ++ +LK L +  N +S    
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKD-LSS-LKDLKKLKSLSLEHNGIS---- 122

Query: 273 SI--ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQ 330
            I  + +L  LE L L +N       ++ L+  +KL+ L L   N +  +     L   +
Sbjct: 123 DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE-DNQISDIVPLAGLT--K 176

Query: 331 LKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
           L+ L L    ++ +   L    +L  L+L   +           N      +  T+ S  
Sbjct: 177 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI-NHQSNLVVPNTVKNTDGSLV 234

Query: 391 GNLQLPDDKH 400
               + DD  
Sbjct: 235 TPEIISDDGD 244

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.5 bits (242), Expect = 5e-21
 Identities = 62/295 (21%), Positives = 108/295 (36%), Gaps = 29/295 (9%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
           F E    +L   S           T   L  +  +    +         +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L  N +      + L+ LKNL  L L  N I    +   + +LK L  L+LE N I D +
Sbjct: 72  LNGNKL---TDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISD-I 124

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
              L ++ +L+ L +  N+++    +++S LT L+ L+L DN       +  LA  +KL+
Sbjct: 125 NG-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQ 178

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP-PFLLHQFDLKYLDLSHNDLDG 366
            L LS   N +     +      LK L +            + HQ +L   +   N  DG
Sbjct: 179 NLYLS--KNHI----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN-TDG 231

Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDM 421
           +  T  + ++                             +  +   F G++ Q +
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 54/377 (14%), Positives = 101/377 (26%), Gaps = 101/377 (26%)

Query: 208 LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
           +      S  I    +             NL+K ++ D      N +  +  +  + + +
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI 55

Query: 268 SGSFPSI--ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
                S+  I  L ++  L L  N      PL++L N                       
Sbjct: 56  K----SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN----------------------- 88

Query: 326 LPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLT 385
                L  L L    +  +   L     LK L L HN +            + +  L   
Sbjct: 89  -----LGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGI------------SDINGL--- 127

Query: 386 NNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS 445
                            L  L + +N  T                 D++           
Sbjct: 128 ------------VHLPQLESLYLGNNKIT-----------------DITV---------- 148

Query: 446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY 505
           ++ + +L  L L  N  S ++    L     L  L LS N+           L  L  L 
Sbjct: 149 LSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLE 203

Query: 506 LENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPV 565
           L + +   K             ++ +   L    P  + +    E   +  +  E    V
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 566 QLLNHRRLQLFSVSENY 582
             + ++ + +      +
Sbjct: 262 SFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 42/256 (16%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
             +      L+K S++  +       +++  +   ++    V    I    N+  L L G
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 74

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERL 711
           N L   I   +  L  LG + L  NK          +++           L+ L  ++ L
Sbjct: 75  NKLT-DIKP-LTNLKNLGWLFLDENKI--------KDLS----------SLKDLKKLKSL 114

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR-YEVYNGSNLDYMVGLDLS 770
            +   GI   + L                 L  + ++  N+  ++   S L  +  L L 
Sbjct: 115 SLEHNGISDINGLV------------HLPQLESL-YLGNNKITDITVLSRLTKLDTLSLE 161

Query: 771 CNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL 830
            N+++ +I   +  L ++  L +S N +S+    + + LK ++ L+L       +     
Sbjct: 162 DNQIS-DI-VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 831 TELNFLSNFNVSYNNL 846
           + L   +    +  +L
Sbjct: 218 SNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 4e-06
 Identities = 42/255 (16%), Positives = 88/255 (34%), Gaps = 64/255 (25%)

Query: 597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG 656
                    +    P   F  +  +  +L+    +  +    NE +++  ++   ++++ 
Sbjct: 2   GETITVSTPIKQIFPDDAF--AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK- 56

Query: 657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716
            +   I  L  +  + L+ NK         T+I            L +L  +  L ++  
Sbjct: 57  SVQG-IQYLPNVTKLFLNGNKL--------TDIK----------PLTNLKNLGWLFLDEN 97

Query: 717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG 776
            I   S L                                   +L  +  L L  N ++ 
Sbjct: 98  KIKDLSSL----------------------------------KDLKKLKSLSLEHNGIS- 122

Query: 777 EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFL 836
           +I   +  L ++  L + +N +++      S L  +++L L  N++S  I P L  L  L
Sbjct: 123 DING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL 177

Query: 837 SNFNVSYNNLSGLIP 851
            N  +S N++S L  
Sbjct: 178 QNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 6e-06
 Identities = 32/196 (16%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 482 LSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPH 541
           ++ +    +IFP      +     L+    +        +   + ++  +++ +   +  
Sbjct: 5   ITVSTPIKQIFPDD-AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG 60

Query: 542 WMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYL 601
            +  L  +  L ++ N    +I   L N + L    + EN +   +++  ++  ++ L L
Sbjct: 61  -IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL 116

Query: 602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ 661
           + N +S    +       L +L L +N  + +    ++  + L  L L  N +   I   
Sbjct: 117 EHNGISDINGLVHL--PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP- 170

Query: 662 ICQLTGLGMMDLSHNK 677
           +  LT L  + LS N 
Sbjct: 171 LAGLTKLQNLYLSKNH 186

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 44/349 (12%), Positives = 104/349 (29%), Gaps = 69/349 (19%)

Query: 501 LQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFE 560
           +      +     +I        + ++  +    ++  +      L+ ++ ++ + +  +
Sbjct: 1   MGETITVSTPIK-QIF-PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 561 GNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNL 620
               +Q L +  +    ++ N L+  +    N+ ++  L+L +N +     +       L
Sbjct: 57  SVQGIQYLPN--VTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIKDLSSLKDL--KKL 111

Query: 621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG 680
            +L L  NG S +    +     L  L L  N +   I   + +LT L  + L  N+   
Sbjct: 112 KSLSLEHNGISDING--LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI-- 165

Query: 681 SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD 740
                 ++I            L  LT ++ L ++   I     L                
Sbjct: 166 ------SDIVP----------LAGLTKLQNLYLSKNHISDLRAL---------------- 193

Query: 741 YLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE 800
                             + L  +  L+L   +   +  +    L     +  +   L  
Sbjct: 194 ------------------AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 801 ----SIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNN 845
               S    +    +   L    N +S      +T     + F+     
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 47/309 (15%), Positives = 94/309 (30%), Gaps = 77/309 (24%)

Query: 545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEH------ 598
             +      + K      +    LN   +     + + +        ++  +++      
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-------SVQGIQYLPNVTK 69

Query: 599 LYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI 658
           L+L  N L+   P+      NL  L L +N    +    + +   L+ L L  N +   I
Sbjct: 70  LFLNGNKLTDIKPLTNL--KNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DI 124

Query: 659 PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGI 718
              +  L  L  + L +NK           IT  +V       L  LT ++ L +    I
Sbjct: 125 NG-LVHLPQLESLYLGNNK-----------ITDITV-------LSRLTKLDTLSLEDNQI 165

Query: 719 YYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEI 778
                L                                  + L  +  L LS N ++ ++
Sbjct: 166 SDIVPL----------------------------------AGLTKLQNLYLSKNHIS-DL 190

Query: 779 PSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN 838
              +  L+ + VL +             SNL +  ++  +   L    P  +++      
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEK 247

Query: 839 FNVSYNNLS 847
            NV ++   
Sbjct: 248 PNVKWHLPE 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 8/236 (3%)

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
           +   +   L      ++    K   S   +LE +++S N +   +E+     L  L  + 
Sbjct: 27  DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 238 LEK-NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
           +EK NN+    P    N+  L+ L IS   +         +      L + DN    T  
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLL-HQFDLK 355
            +S    S   V+L   +N + ++    F  T   ++    N +L  +P  +        
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 356 YLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN 411
            LD+S   +  + P++ L+N  KL      N      L    +K   L    ++  
Sbjct: 206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 20/226 (8%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            +    F  F +L+ +++S N    V E   +  L  L  ++I     N   Y +   F 
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLYINPEAF- 100

Query: 176 YLNALTSLTTLILRENNIQG--SRTKQGLSKLKNLEALDLSSNFINGSLESQGICEL-KN 232
               L +L  L++    I+      K    +      LD+  N    ++E      L   
Sbjct: 101 --QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL---LDIQDNINIHTIERNSFVGLSFE 155

Query: 233 LFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE 292
             +L L KN I++   +  N     ++     N L      +    +    L +      
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 293 GTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPN 338
            + P   L N  KL         N+ ++ T   L    L    L  
Sbjct: 216 -SLPSYGLENLKKLRARST---YNLKKLPTLEKLV--ALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 14/232 (6%)

Query: 404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS 463
                  +  T ++P D   + +  + +             + +   +L  +++S+N+  
Sbjct: 12  RVFLCQESKVT-EIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 464 GELSAALLTSCFSLLWLGLSDNNFYGRIFPGY-MNLTQLQYLYLENNKFSGKIEEGL-LK 521
             + A + ++   L  + +   N    I P    NL  LQYL + N      + +   + 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126

Query: 522 SKKLVELRMSSNMLSGHIPHWM--GNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQLFSV 578
           S + V L +  N+    I      G      +L ++KN  +  I     N  +  +L   
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 579 SENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDN 628
             N L       F   S    L + +  +   +P     +   L      + 
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 36/222 (16%)

Query: 497 NLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMS-SNMLSGHIPHWMGNLSYLEVLLM 554
               L+ + +  N     IE  +  +  KL E+R+  +N L  +I               
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP------------- 97

Query: 555 SKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIA 613
               F+            LQ   +S   +         +      L +Q N     I   
Sbjct: 98  --EAFQNL--------PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 614 LFR--SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTGLGM 670
            F   S   + L L  NG   +     N        L   NNLE ++PN +    +G  +
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI 206

Query: 671 MDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLD 712
           +D+S  + + S+PS      L ++  L      +L  +  L+
Sbjct: 207 LDISRTRIH-SLPSY----GLENLKKLRARSTYNLKKLPTLE 243

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 25/284 (8%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRG 651
            +   L      L   I    F    +L  +++  N    VI   + +    L  + +  
Sbjct: 30  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 652 NNLEGQIPNQICQ-LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVER 710
            N    I  +  Q L  L  + +S+      +P     I       LD     ++  +ER
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD-VHKIHSLQKVLLDIQDNINIHTIER 146

Query: 711 -----LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG---SNLD 762
                L   S+ ++    L+   +       F    L E+     N  E           
Sbjct: 147 NSFVGLSFESVILW----LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR- 821
             V LD+S  ++   +PS    L+ +  L     +  + +P +   L  +    L++   
Sbjct: 203 GPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258

Query: 822 --LSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESS 863
                    +++EL+ + N ++    +  +   +GQ ++  E +
Sbjct: 259 CCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDN 302

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 37/229 (16%)

Query: 501 LQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNF 558
              L     K    I++G       L ++ +S N +   I   +  NL  L  + + K  
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA- 89

Query: 559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSS 618
                     N     L  ++             + ++++L +    +     +    S 
Sbjct: 90  ----------N----NLLYINPEAFQN-------LPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 619 NLLTLDLRDNGFSGVIPHQI--NECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
             + LD++DN     I              L L  N ++ +I N     T L  ++LS N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 677 K---------FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI 716
                     F+G+      +I+   + +L  Y LE+L  +      ++
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
                +K+T EIPS++   +    L      L      +FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 827 PP----KLTELNFLSNFNVSYNNLSGLIPD 852
                  L +L+ +       NNL  + P+
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLLYINPE 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 26/268 (9%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           +       + + +L         +      + +  L  L  L L  N   D     L  L
Sbjct: 33  DTVTQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITD--LAPLKNL 84

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           T +T L L  N +   +    ++ L++++ LDL+S  I    +   +  L NL VL L+ 
Sbjct: 85  TKITELELSGNPL---KNVSAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDL 138

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I + +   L  +T L+ L I   Q+S    + ++NL+ L  L   DN       +S L
Sbjct: 139 NQITN-ISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD---ISPL 191

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
           A+   L  + L   N +  V          L ++ L N ++   P    +  +L   ++ 
Sbjct: 192 ASLPNLIEVHLK-NNQISDVSPLANTS--NLFIVTLTNQTITNQPV--FYNNNLVVPNVV 246

Query: 361 HNDLDGAFPTWALQNNTKLEVLLLTNNS 388
                       + +N       LT N 
Sbjct: 247 KGPSGAPIAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 5e-20
 Identities = 57/295 (19%), Positives = 104/295 (35%), Gaps = 33/295 (11%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
                 +    ++           T   L  +  L+             +  L +L  L 
Sbjct: 18  LANAIKIAAGKSNVTDT------VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L++N I        L  L  +  L+LS N +        I  L+++  L+L    I D  
Sbjct: 70  LKDNQI---TDLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD-- 121

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
              L  ++ L+VL +  NQ++   P  ++ LT+L+YL++ +        L+ LAN SKL 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD---LTPLANLSKLT 176

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGA 367
            L     +N +            L  + L N  ++ + P L +  +L  + L++  +   
Sbjct: 177 TLKAD--DNKIS-DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT-- 230

Query: 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMG 422
                +  N  L V  +           P        +   +S N T  L   + 
Sbjct: 231 --NQPVFYNNNLVVPNVVKG----PSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 22/238 (9%)

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
             AL +   +   ++N+  + T    + L  +  L      +      +G+  L NL  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGL 68

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
            L+ N I D     L N+T++  L++S N L       I+ L S++ L L         P
Sbjct: 69  ELKDNQITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124

Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKY 356
           L+ L+N   L+VL L   N +  +     L    L+ L + N  ++ + P L +   L  
Sbjct: 125 LAGLSN---LQVLYLD-LNQITNISPLAGLT--NLQYLSIGNAQVSDLTP-LANLSKLTT 177

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
           L    N +    P   L +   L  + L NN  +    L       L  + +++   T
Sbjct: 178 LKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 31/270 (11%)

Query: 201 GLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVL 260
               L N   +    + +    ++    +L  +  L+     +   +   +  +  L  L
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGL 68

Query: 261 DISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQV 320
           ++  NQ++    + + NLT +  L L  N  +    ++ L +   ++ L L+    +  V
Sbjct: 69  ELKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLT-STQITDV 122

Query: 321 QTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN---DLDGAFPTWALQNNT 377
                L    L+VL L    +  I P L    +L+YL + +    DL        L N +
Sbjct: 123 TPLAGLS--NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------LANLS 173

Query: 378 KLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH 437
           KL  L   +N  +    L       L  + + +N  +   P         L  + ++N  
Sbjct: 174 KLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSPLAN---TSNLFIVTLTNQT 228

Query: 438 FEGNIASSIAEMKELRFLDLSKNNFSGELS 467
                   +     L   ++ K      ++
Sbjct: 229 ITNQ---PVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 50/338 (14%), Positives = 93/338 (27%), Gaps = 96/338 (28%)

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPL 297
            +   I    P     +     +    + ++       ++L  +  L+ F         +
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGV 59

Query: 298 SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL 357
             L N                            L  L L +  +  + P L +   +  L
Sbjct: 60  QYLNN----------------------------LIGLELKDNQITDLAP-LKNLTKITEL 90

Query: 358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKL 417
           +LS N L        +     ++ L LT+   T    L    +  L  L +  N  T   
Sbjct: 91  ELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQIT--- 142

Query: 418 PQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL 477
                                  NI S +A +  L++L +     S              
Sbjct: 143 -----------------------NI-SPLAGLTNLQYLSIGNAQVSD------------- 165

Query: 478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG 537
                              NL++L  L  ++NK S      L     L+E+ + +N +S 
Sbjct: 166 --------------LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD 209

Query: 538 HIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL 575
             P  + N S L ++ ++             N     +
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 44/260 (16%), Positives = 93/260 (35%), Gaps = 64/260 (24%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
            +++   +   K++++  +  A      + TL     G + +    +   +NL  L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERL 711
           N +   +   +  LT +  ++LS N    ++ +                 +  L  ++ L
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLK-NVSA-----------------IAGLQSIKTL 112

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
           D+ S  I   + L                                  + L  +  L L  
Sbjct: 113 DLTSTQITDVTPL----------------------------------AGLSNLQVLYLDL 138

Query: 772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831
           N++T  I S +  L  +  L++ +  +S+      +NL  + +L    N++S  I P L 
Sbjct: 139 NQIT-NI-SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DISP-LA 192

Query: 832 ELNFLSNFNVSYNNLSGLIP 851
            L  L   ++  N +S + P
Sbjct: 193 SLPNLIEVHLKNNQISDVSP 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 13/212 (6%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIFLYLNALTSLT 184
               Q + L  N    V       +  + + L IL L  N     D + F     L  L 
Sbjct: 31  PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAF---TGLALLE 83

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
            L L +N    S        L  L  L L    +   L       L  L  L L+ N ++
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 245 DHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
               +   ++  L  L +  N++S         L SL+ L L  N         +  +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLG 201

Query: 305 KLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
           +L  L L   NN+  + TE   P   L+ LRL
Sbjct: 202 RLMTLYLF-ANNLSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 49/205 (23%), Positives = 72/205 (35%), Gaps = 16/205 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN----YFDDSIF 174
            +  + F     L  L L +N    +           L  L+ L+L  N      D + F
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF 234
              + L  L TL L    +Q          L  L+ L L  N +  +L      +L NL 
Sbjct: 102 ---HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156

Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
            L L  N I          +  L  L +  N+++   P    +L  L  L LF NN    
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQ 319
            P  +LA    L+ L L+  +N   
Sbjct: 216 LPTEALAPLRALQYLRLN--DNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 10/209 (4%)

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
               + L  N I             L +L +  N L+    +  + L  LE L L DN  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLL-H 350
             +   ++     +L  L L  R  + ++    F     L+ L L + +L  +P      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD---DKHDFLHHLD 407
             +L +L L  N +  + P  A +    L+ LLL  N       +          L  L 
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA---HVHPHAFRDLGRLMTLY 207

Query: 408 ISSNNFTGKLPQDMGIILQKLLYMDMSNN 436
           + +NN +  LP +    L+ L Y+ +++N
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN- 265
             + + L  N I+  + +      +NL +L L  N +          +  L+ LD+S N 
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
           QL    P+    L  L  L L     +           + L+ L L   N +  +  + F
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ-DNALQALPDDTF 149

Query: 326 LPTFQLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLL 384
                L  L L    ++ +P         L  L L  N +       A ++  +L  L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 385 TNNSFTGNLQLPD---DKHDFLHHLDISSNNF 413
             N+ +    LP         L +L ++ N +
Sbjct: 209 FANNLS---ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 52/235 (22%), Positives = 79/235 (33%), Gaps = 31/235 (13%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
              + + +  N++S    +      +L  L L  N        ++    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS-D 89

Query: 315 NNMLQ-VQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWA 372
           N  L+ V    F    +L  L L  C L  + P L      L+YL L  N L  A P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
            ++   L  L L  N  +                 +    F G         L  L  + 
Sbjct: 149 FRDLGNLTHLFLHGNRIS----------------SVPERAFRG---------LHSLDRLL 183

Query: 433 MSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
           +  N        +  ++  L  L L  NN S  L    L    +L +L L+DN +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 15/235 (6%)

Query: 400 HDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSK 459
           ++               +P  +    Q++    +  N      A+S    + L  L L  
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 460 NNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENNKFSGKIEEG 518
           N  +  + AA  T    L  L LSDN     + P  +  L +L  L+L+      ++  G
Sbjct: 66  NVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 519 LLKS-KKLVELRMSSNMLSGHIP-HWMGNLSYLEVLLMSKNFFEGNIPVQLLNH-RRLQL 575
           L +    L  L +  N L   +P     +L  L  L +  N    ++P +       L  
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR 181

Query: 576 FSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDN 628
             + +N ++     +F ++  +  LYL  N+LS  +P         L  L L DN
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 50/230 (21%), Positives = 82/230 (35%), Gaps = 31/230 (13%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENN 509
             + + L  N  S  + AA   +C +L  L L  N    RI    +  L  L+ L L +N
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 510 KFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPH-WMGNLSYLEVLLMSKNFFEGNIPVQL 567
                ++        +L  L +    L   +       L+ L+ L +  N          
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN---------- 139

Query: 568 LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLR 626
                  L ++ ++           + ++ HL+L  N +S  +P   FR   +L  L L 
Sbjct: 140 ------ALQALPDDTFRD-------LGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLH 185

Query: 627 DNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
            N  + V PH   +   L  L L  NNL       +  L  L  + L+ N
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 55/257 (21%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           ++ + ++L  N +S     +     NL  L L  N  + +        + L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 654 LEGQIPNQI-CQLTGLGMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLEHLTFVERL 711
               +       L  L  + L        +    F  +            L++L     L
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA----------ALQYL----YL 136

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
             N++       L             TF  L                 NL +   L L  
Sbjct: 137 QDNAL-----QALPDD----------TFRDL----------------GNLTH---LFLHG 162

Query: 772 NKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPK- 829
           N+++  +P      L  +  L +  N ++   P +F +L  + +L L  N LS  +P + 
Sbjct: 163 NRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEA 220

Query: 830 LTELNFLSNFNVSYNNL 846
           L  L  L    ++ N  
Sbjct: 221 LAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 56/247 (22%), Positives = 80/247 (32%), Gaps = 63/247 (25%)

Query: 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQI-CQLTGL 668
           +P+ +   +    + L  N  S V       C NL  L L  N L  +I       L  L
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 669 GMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMG 727
             +DLS N    S+    F  +           RL  L     LD   +       L  G
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLG----------RLHTL----HLDRCGL-----QELGPG 123

Query: 728 QLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQ 786
                      F  L                + L Y   L L  N L   +P +   +L 
Sbjct: 124 ----------LFRGL----------------AALQY---LYLQDNALQ-ALPDDTFRDLG 153

Query: 787 EIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP----KLTELNFLSNFNVS 842
            +  L +  N +S     +F  L  ++ L L  NR++  + P     L  L  L    + 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL---YLF 209

Query: 843 YNNLSGL 849
            NNLS L
Sbjct: 210 ANNLSAL 216

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.3 bits (217), Expect = 8e-20
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS 214
           + K      LG +   +   +    + SLT + L   N+       G+    N++ L ++
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTIN 74

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
           +           I  L NL  L +   ++       L+ +T L +LDIS +    S  + 
Sbjct: 75  NIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
           I+ L  +  + L  N       +  L    +L+ L + 
Sbjct: 132 INTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
           L  + L+N +   +        +     +K L +   +  +   +  + L++L  L +  
Sbjct: 46  LTYITLANINVTDL------TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMG 97

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNN-IEDHLPN 249
            ++   +    LS L +L  LD+S +  + S+ +  I  L  +  ++L  N  I D    
Sbjct: 98  KDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD--IM 153

Query: 250 CLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
            L  +  LK L+I F+ +       I +   L  L  F   
Sbjct: 154 PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 9e-18
 Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 11/142 (7%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
              ++ L ++N            + +  L  L+ L +            L+ LTSLT L 
Sbjct: 65  AHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           +  +    S     ++ L  + ++DLS N     +    +  L  L  LN++ + + D+ 
Sbjct: 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR 175

Query: 248 PNCLNNMTRLKVLDISFNQLSG 269
              + +  +L  L      + G
Sbjct: 176 G--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 42/221 (19%)

Query: 294 TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF-LLHQF 352
             P S+         L      +     TE  +    L  + L N ++  +      H  
Sbjct: 16  NIPDSTFKA-----YLNGLLGQSSTANITEAQMN--SLTYITLANINVTDLTGIEYAHN- 67

Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNN 412
            +K L +++       P   +   + LE L +     T                     N
Sbjct: 68  -IKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVT----------------SDKIPN 107

Query: 413 FTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLT 472
            +G         L  L  +D+S++  + +I + I  + ++  +DLS N    ++    L 
Sbjct: 108 LSG---------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LK 156

Query: 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG 513
           +   L  L +  +  +   + G  +  +L  LY  +    G
Sbjct: 157 TLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS 818
           S L  +  L +    +T +    +  L  + +L++SH+   +SI    + L  + S+DLS
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
           +N     I P L  L  L + N+ ++ +     
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 7/164 (4%)

Query: 445 SIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504
           + A+M  L ++ L+  N + +L+   +    ++  L +++ +     +     L+ L+ L
Sbjct: 39  TEAQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHA--TNYNPISGLSNLERL 93

Query: 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP 564
            +     +      L     L  L +S +     I   +  L  +  + +S N    +I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 565 VQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG 608
             L     L+  ++  + +  +     +   +  LY    ++ G
Sbjct: 154 P-LKTLPELKSLNIQFDGVHDYRGIE-DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
           S  +        L  LD+S+++     ++     + +L ++  ++L YN     I   L 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDIM-PLK 156

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFING 220
            L  L +L ++ + +   R   G+     L  L   S  I G
Sbjct: 157 TLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 759 SNLDYMVGL---DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESL 815
           + ++Y   +    ++    T    + I  L  +  L +    ++     + S L  +  L
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 816 DLSHNRLSGQIPPKLTELNFLSNFNVSYNNL 846
           D+SH+     I  K+  L  +++ ++SYN  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
              +++ L +     +   PI+    SNL  L +     +      ++  ++L  L +  
Sbjct: 64  YAHNIKDLTINNIHATNYNPISGL--SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
           +  +  I  +I  L  +  +DLS+N     I  
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 58/357 (16%), Positives = 117/357 (32%), Gaps = 64/357 (17%)

Query: 159 LKILNLGYNYFDD----SIFLYLNALTSLTTLILRENNIQGSRTK---QGLSKLKNLEAL 211
           ++  +L  +        S+F  L    S+  ++L  N I     +   + ++  K+LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 212 DLSSNFINGSLE---------SQGICELKNLFVLNLEKNNIED----HLPNCLNNMTRLK 258
           + S  F     +          Q + +   L  + L  N         L + L+  T L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 259 VLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318
            L +  N L     + I+        AL +             N   L  ++     N L
Sbjct: 126 HLYLHNNGLGPQAGAKIAR-------ALQELA-----VNKKAKNAPPLRSIICG--RNRL 171

Query: 319 QVQT-----ENFLPTFQLKVLRLPNCSL------NVIPPFLLHQFDLKYLDLSHNDL--D 365
           +  +     + F     L  +++    +      +++   L +  +LK LDL  N     
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 366 GAFP-TWALQNNTKLEVLLLTNNSFTGN------LQLPDDKHDFLHHLDISSNNFTGK-- 416
           G+     AL++   L  L L +   +              ++  L  L +  N       
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 417 --LPQDMGIILQKLLYMDMSNNHF--EGNIASSIAEM----KELRFLDLSKNNFSGE 465
             L   +   +  LL+++++ N F  E ++   I E+          +L       +
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 69/306 (22%)

Query: 131 LQSLDLSNNSF--EGVYENQAYDTLGSLKRLKILNLGYNYFDD----------SIFLYLN 178
           ++ + LS N+   E        + + S K L+I      +              +   L 
Sbjct: 34  VKEIVLSGNTIGTEAARW--LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKL----KNLEALDLSSNFINGSLESQGICEL---- 230
               L T+ L +N   G   ++ L         LE L L +N + G      I       
Sbjct: 92  KCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQEL 149

Query: 231 ---------KNLFVLNLEKNNIED----HLPNCLNNMTRLKVLDISFNQL-----SGSFP 272
                      L  +   +N +E+           +   L  + +  N +          
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 273 SIISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLLSTRNNMLQVQTENFLPTF 329
             ++    L+ L L DN F   G+  L+  L +   L  L L+  + +L  +    +   
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN--DCLLSARGAAAV--- 264

Query: 330 QLKVLR-LPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG----AFPTWALQNNTKLEVLLL 384
            +     L N               L+ L L +N+++        T   +    L  L L
Sbjct: 265 -VDAFSKLENIG-------------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 385 TNNSFT 390
             N F+
Sbjct: 311 NGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 64/326 (19%), Positives = 108/326 (33%), Gaps = 61/326 (18%)

Query: 257 LKVLDISFNQLSG----SFPSIISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVL 309
           ++   +  + ++     S  +++    S++ + L  N    E    LS  +A+   LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 310 LLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL--DGA 367
             S  +       +                +L ++   LL    L  + LS N       
Sbjct: 66  EFS--DIFTGRVKDEIPE------------ALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 368 FP-TWALQNNTKLEVLLLTNNSFT-------------GNLQLPDDKHDFLHHLDISSNNF 413
            P    L  +T LE L L NN                  +         L  +    N  
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 414 TGKLPQDMGIILQK---LLYMDMSNNHF-----EGNIASSIAEMKELRFLDLSKNNFSGE 465
                ++     Q    L  + M  N       E  +   +A  +EL+ LDL  N F+  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 466 LSAAL---LTSCFSLLWLGLSDNNFY-------GRIFPGYMNLTQLQYLYLENNKFSGK- 514
            S+AL   L S  +L  LGL+D              F    N+  LQ L L+ N+     
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDA 290

Query: 515 ---IEEGLL-KSKKLVELRMSSNMLS 536
              ++  +  K   L+ L ++ N  S
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 43/245 (17%), Positives = 78/245 (31%), Gaps = 44/245 (17%)

Query: 442 IASSIAEMKELRFLDLSKNNFSGELSAAL---LTSCFSLLWLGLSDNNFYGR-------- 490
           + + + E   ++ + LS N    E +  L   + S   L     SD  F GR        
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEA 82

Query: 491 ---IFPGYMNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSGHIPHWM 543
              +    +   +L  + L +N F       + + L K   L  L + +N          
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---------- 132

Query: 544 GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-----NISSVEH 598
             L       +++   E  +  +  N   L+      N L       +     +   +  
Sbjct: 133 -GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 599 LYLQKNSL-----SGPIPIALFRSSNLLTLDLRDNGFSG----VIPHQINECSNLRFLLL 649
           + + +N +        +   L     L  LDL+DN F+      +   +    NLR L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 650 RGNNL 654
               L
Sbjct: 252 NDCLL 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 23/242 (9%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           +    +    +  +  +N+  + V        +  L  +  L L  N   D     L  L
Sbjct: 38  DAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLANL 89

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
            +L  L L EN +   +    L  LK L++L L  N I+   +  G+  L  L  L L  
Sbjct: 90  KNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGN 143

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I D     L+ +T+L  L +  NQ+S      ++ LT L+ L L  N+      L +L
Sbjct: 144 NKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD---LRAL 196

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
           A    L+VL L      L     +         ++  + SL V P  +    D +  ++ 
Sbjct: 197 AGLKNLDVLELF-SQECLNKPINHQSNLVVPNTVKNTDGSL-VTPEIISDDGDYEKPNVK 254

Query: 361 HN 362
            +
Sbjct: 255 WH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 20/238 (8%)

Query: 153 LGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD 212
             +       NL      D++    N L S+  +I   ++I+   + QG+  L N+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP 272
           L+ N +    + + +  LKNL  L L++N ++D L + L ++ +LK L +  N +S    
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNGISDING 129

Query: 273 SIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLK 332
             + +L  LE L L +N       ++ L+  +KL+ L L   N +  +     L   +L+
Sbjct: 130 --LVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE-DNQISDIVPLAGLT--KLQ 181

Query: 333 VLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
            L L    ++ +   L    +L  L+L   +     P     N      +  T+ S  
Sbjct: 182 NLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 61/261 (23%), Positives = 104/261 (39%), Gaps = 28/261 (10%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
           F E    +L   S           T   L  +  +    +         +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L  N +      + L+ LKNL  L L  N +    +   + +LK L  L+LE N I D +
Sbjct: 75  LNGNKL---TDIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISD-I 127

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
              L ++ +L+ L +  N+++    +++S LT L+ L+L DN       +  LA  +KL+
Sbjct: 128 NG-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQ 181

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGA 367
            L LS   N +            L VL L +      P  + HQ +L   +   N  DG+
Sbjct: 182 NLYLS--KNHIS-DLRALAGLKNLDVLELFSQECLNKP--INHQSNLVVPNTVKN-TDGS 235

Query: 368 FPT-WALQNNTKLEVLLLTNN 387
             T   + ++   E   +  +
Sbjct: 236 LVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 28/234 (11%)

Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNI 243
           +  I     I+                 +L    +    ++    EL ++  +    ++I
Sbjct: 5   SETITVPTPIK---QIFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 58

Query: 244 EDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANH 303
           +  +   +  +  +  L ++ N+L+   P  ++NL +L +L L +N  +    L  L   
Sbjct: 59  KS-VQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKK- 113

Query: 304 SKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN- 362
             L+ L L   N +  +     LP  QL+ L L N  +  I   L     L  L L  N 
Sbjct: 114 --LKSLSLE-HNGISDINGLVHLP--QLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQ 167

Query: 363 --DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
             D+        L   TKL+ L L+ N  + +L+        L  L++ S    
Sbjct: 168 ISDIVP------LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 48/310 (15%), Positives = 86/310 (27%), Gaps = 92/310 (29%)

Query: 226 GICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA 285
                      NL+K ++ D      N +  +  +  + + +       I  L ++  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIP 345
           L  N      PL++L N                                           
Sbjct: 75  LNGNKLTDIKPLANLKN------------------------------------------- 91

Query: 346 PFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHH 405
                   L +L L  N +        L++  KL+ L L +N  +               
Sbjct: 92  --------LGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGIS--------------- 125

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
            DI+               L +L  + + NN    +I + ++ + +L  L L  N  S +
Sbjct: 126 -DINGLVH-----------LPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQIS-D 170

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525
           +    L     L  L LS N+           L  L  L L + +   K           
Sbjct: 171 IVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 526 VELRMSSNML 535
             ++ +   L
Sbjct: 227 NTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 20/229 (8%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNS 388
           +     L   S+        ++ + +  +  +++D+        +Q    +  L L  N 
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 79

Query: 389 FTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE 448
            T +++ P      L  L +  N             L+KL  + + +N    +I + +  
Sbjct: 80  LT-DIK-PLANLKNLGWLFLDENKVKDLSSLKD---LKKLKSLSLEHNGIS-DI-NGLVH 132

Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
           + +L  L L  N  + +++   L+    L  L L DN            LT+LQ LYL  
Sbjct: 133 LPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 187

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
           N  S      L   K L  L + S        +   NL     +  +  
Sbjct: 188 NHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 16/225 (7%)

Query: 444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY 503
            S     E    +L K + +  ++   L S   +  +  ++++   +   G   L  +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDI--KSVQGIQYLPNVTK 72

Query: 504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI 563
           L+L  NK +  I+  L   K L  L +  N +       + +L  L+ L +  N    +I
Sbjct: 73  LFLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DI 127

Query: 564 PVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTL 623
              L++  +L+   +  N ++     S  ++ ++ L L+ N +S  +P+A    + L  L
Sbjct: 128 NG-LVHLPQLESLYLGNNKITDITVLS-RLTKLDTLSLEDNQISDIVPLAGL--TKLQNL 183

Query: 624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668
            L  N  S +    +    NL  L L       +  N    L   
Sbjct: 184 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 43/255 (16%), Positives = 90/255 (35%), Gaps = 40/255 (15%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
             +      L+K S++  +       +++  +   ++    V    I    N+  L L G
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERL 711
           N L   I   +  L  LG + L  NK          +++           L+ L  ++ L
Sbjct: 78  NKLT-DIKP-LANLKNLGWLFLDENK--------VKDLS----------SLKDLKKLKSL 117

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
            +   GI  S +  +  L            L  +        ++   S L  +  L L  
Sbjct: 118 SLEHNGI--SDINGLVHLPQ----------LESLYLGNNKITDITVLSRLTKLDTLSLED 165

Query: 772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT 831
           N+++ +I   +  L ++  L +S N +S+    + + LK ++ L+L       +     +
Sbjct: 166 NQIS-DI-VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 832 ELNFLSNFNVSYNNL 846
            L   +    +  +L
Sbjct: 222 NLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 40/254 (15%), Positives = 87/254 (34%), Gaps = 64/254 (25%)

Query: 598 HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ 657
                   +        F  +  +  +L+    +  +    NE +++  ++   ++++  
Sbjct: 6   ETITVPTPIKQIFSDDAF--AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-S 60

Query: 658 IPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIG 717
           +   I  L  +  + L+ NK         T+I            L +L  +  L ++   
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKL--------TDIK----------PLANLKNLGWLFLDENK 101

Query: 718 IYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGE 777
           +   S L                                   +L  +  L L  N ++ +
Sbjct: 102 VKDLSSL----------------------------------KDLKKLKSLSLEHNGIS-D 126

Query: 778 IPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS 837
           I   +  L ++  L + +N +++      S L  +++L L  N++S  I P L  L  L 
Sbjct: 127 ING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ 181

Query: 838 NFNVSYNNLSGLIP 851
           N  +S N++S L  
Sbjct: 182 NLYLSKNHISDLRA 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 89.1 bits (220), Expect = 4e-18
 Identities = 95/582 (16%), Positives = 164/582 (28%), Gaps = 165/582 (28%)

Query: 37  CLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQL 96
            L +++     ++ F    +   Y+      ++    MS      K       +      
Sbjct: 70  TLLSKQE--EMVQKFVEEVLRINYK------FL----MSP----IK-TEQRQPSM----- 107

Query: 97  LLNDTSKFIEY-SKNYTYGDMVLSLNVSLFHPFEELQS--LDLSNNSFEGVY-------- 145
               T  +IE   + Y    +    NVS   P+ +L+   L+L       +         
Sbjct: 108 ---MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 146 --ENQAYDTLGSLKRL--KI--LNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTK 199
                   +     ++  KI  LNL      +++   L  L           +   S  K
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 200 QGLSKLKN-LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT-RL 257
             +  ++  L  L  S  + N             L VL     N+++      N      
Sbjct: 225 LRIHSIQAELRRLLKSKPYENC------------LLVL----LNVQN--AKAWNAFNLSC 266

Query: 258 KVL----DIS-FNQLSGSFPSIIS------NLT---SLEYLALFDNNFEGTFPLSSLANH 303
           K+L         + LS +  + IS       LT       L  + +      P   L  +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 304 SKLEVLLLS-----------TRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF 352
                  LS           T +N   V  +      +         SLNV+ P    + 
Sbjct: 327 P----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--------SLNVLEPAEYRKM 374

Query: 353 DLKYLDLSHNDLDGAFPT------------WALQNNTKLEVLLLTNNSFTGNL--QLPDD 398
              +  LS       FP             W   +  K +V+++ N     +L  + P +
Sbjct: 375 ---FDRLS------VFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 399 KHDFLHHLDISSNNFTGKLPQDMGI---------ILQKLLYMDMSNNHFEGNIASSIA-- 447
               +  + +       KL  +  +         I +     D+   + +    S I   
Sbjct: 424 STISIPSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 448 --------EMKELR--FLDLSKNNFSGELSAALLTSCFSLLWLG-----LSDNNFYGR-I 491
                    M   R  FLD     F   L   +     +    G     L    FY   I
Sbjct: 481 LKNIEHPERMTLFRMVFLDF---RF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 492 FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK--KLVELRMS 531
                   +L    L    F  KIEE L+ SK   L+ + + 
Sbjct: 535 CDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-06
 Identities = 116/648 (17%), Positives = 228/648 (35%), Gaps = 161/648 (24%)

Query: 234 FVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGS---FPSIISNLTSLEYLAL---F 287
           FV N +  +++D   + L+    +  + +S + +SG+   F +++S    +    +    
Sbjct: 29  FVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 288 DNNFEGTFPLSSLANHSK----LEVLLLSTRNNML---QVQTENFLPTFQLKVLRLPNCS 340
             N++  F +S +    +    +  + +  R+ +    QV  +  +   Q   L+L    
Sbjct: 88  RINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL 144

Query: 341 LNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKH 400
           L + P         K + +    L G+  TW       + + +  +            K 
Sbjct: 145 LELRPA--------KNVLI-DGVL-GSGKTW-------VALDVCLSYKV-------QCKM 180

Query: 401 DF-LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSK 459
           DF +  L++ + N     P+ +  +LQKLLY    N     + +S+I    +LR   + +
Sbjct: 181 DFKIFWLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRIHSI-Q 231

Query: 460 NNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL 519
                 L +    +C  LL L    N    + +                N F+       
Sbjct: 232 AELRRLLKSKPYENC--LLVL---LNVQNAKAW----------------NAFN------- 263

Query: 520 LKSKKLVELRMSS--NMLSG----HIP--HWMGNLSYLEVL-LMSK--NFFEGNIPVQLL 568
           L  K L+  R     + LS     HI   H    L+  EV  L+ K  +    ++P ++L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 569 --NHRRLQLFSVS--------ENY-------LSGFMTTSFNI---SSVEHLY-----LQK 603
             N RRL + + S        +N+       L+  + +S N+   +    ++        
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC 663
           ++    IP      + LL+L +  +     +   +N+      +  +       IP+   
Sbjct: 384 SA---HIP------TILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 664 QLTGLGMMDLS-HNKFNGS--IPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYY 720
           +L      + + H        IP  F +  L     LD+Y   H           IG ++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFYSH-----------IG-HH 480

Query: 721 SSMLDMGQLSSEERGPFTFDYLVEVEFV-TKNRYEVYN----GSNLDYMVGLDLSCNKLT 775
              ++  +  +  R  F  D+     F+  K R++       GS L+ +    L      
Sbjct: 481 LKNIEHPERMTLFRMVF-LDF----RFLEQKIRHDSTAWNASGSILNTL--QQL--KFYK 531

Query: 776 GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS 823
             I     + + +  +N   +FL    P+   NL   +  DL    L 
Sbjct: 532 PYICDNDPKYERL--VNAILDFL----PKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 87/613 (14%), Positives = 163/613 (26%), Gaps = 188/613 (30%)

Query: 400 HDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH---FEGNIASSIAEMKEL---- 452
           H   HH+D  +     +  +D+  + +     +           +I S   E+  +    
Sbjct: 1   HHHHHHMDFETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSK 58

Query: 453 -------RFLD--LSKNN-----FSGELSAALLTSCFSLLWLGLSD-------------- 484
                  R     LSK       F  E    +L   +  L   +                
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 485 --NNFY--GRIFPGY---------------MNLTQLQYLYLENNKFSGK----IEEGLLK 521
             +  Y   ++F  Y               + L   + + ++    SGK    ++  +  
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCL 172

Query: 522 SKKLVELRMSSNMLSGHIPHWM--GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS 579
           S K V+ +M   +       W+   N +  E +L           +Q L +   Q+    
Sbjct: 173 SYK-VQCKMDFKI------FWLNLKNCNSPETVL---------EMLQKLLY---QIDPNW 213

Query: 580 ENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIAL----------------FRSSNLLTL 623
            +           I S++   L++   S P    L                     LLT 
Sbjct: 214 TSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT- 271

Query: 624 DLRD----NGFSGVIPHQI---------NECSNLRFLLLRGNNLEGQIPNQICQ-----L 665
             R     +  S      I                 LL   +     +P ++       L
Sbjct: 272 -TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 666 TGLGMM------------DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLT-FVERLD 712
           + +                ++ +K    I S    +         R   + L+ F     
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPP--S 384

Query: 713 VN------SI----GIYYSSMLDMGQL---SSEERGPFT---------FDYLVEVEFVTK 750
            +      S+     I    M+ + +L   S  E+ P            +  V++E    
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 751 ------NRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG-ELQEIPVLNMSHNFLSESIP 803
                 + Y +    + D     DL    L     S IG  L+ I               
Sbjct: 445 LHRSIVDHYNIPKTFDSD-----DLIPPYLDQYFYSHIGHHLKNI---EHPERM--TLFR 494

Query: 804 ESFSNLKMIES---LDLSHNRLSGQIPPKLTELNFLSNF-NVSYNNLSGLIPDKGQF-AT 858
             F + + +E     D +    SG I   L +L F   +   +      L+     F   
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 859 FDESSYRGNLHLC 871
            +E+      +  
Sbjct: 555 IEENLICSK-YTD 566

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.2 bits (206), Expect = 9e-18
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 24/204 (11%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
                  +L   S   +       +   L  ++  N   +         +   T+L  L 
Sbjct: 18  LANAVKQNLGKQSVTDL------VSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L  N I        L  L  LE L ++ N +  +L          L  L L+ N + D  
Sbjct: 70  LSHNQI---SDLSPLKDLTKLEELSVNRNRLK-NLNG---IPSACLSRLFLDNNELRD-- 120

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
            + L ++  L++L I  N+L      ++  L+ LE L L  N          L    K+ 
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN---TGGLTRLKKVN 175

Query: 308 VLLLSTRNNMLQVQTENFLPTFQL 331
            + L+        +   + P   +
Sbjct: 176 WIDLT--GQKCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 48/205 (23%), Positives = 74/205 (36%), Gaps = 21/205 (10%)

Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
            I R   I           L N    +L    +    +     EL  +   N + +NI+ 
Sbjct: 2   SIQRPTPIN---QVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS 55

Query: 246 HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSK 305
            L   +   T LK L +S NQ+S   P  + +LT LE L++  N  +    + S      
Sbjct: 56  -LAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSA----C 107

Query: 306 LEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365
           L  L L   N +    +   L    L++L + N  L  I   L     L+ LDL  N++ 
Sbjct: 108 LSRLFLD-NNELRDTDSLIHLK--NLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEIT 163

Query: 366 GAFPTWALQNNTKLEVLLLTNNSFT 390
                  L    K+  + LT     
Sbjct: 164 NTGG---LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 43/213 (20%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
              L +     L + ++          +L  ++  +  ++ I  SL   G+    NL  L
Sbjct: 15  DPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKEL 68

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNL--TSLEYLALFDNNFEGT 294
           +L  N I D L   L ++T+L+ L ++ N+L       ++ +    L  L L +N     
Sbjct: 69  HLSHNQISD-LSP-LKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD- 120

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDL 354
               SL +   LE+L +   N +  +    FL   +L+VL L    +      L     +
Sbjct: 121 --TDSLIHLKNLEILSIR-NNKLKSIVMLGFLS--KLEVLDLHGNEITNTGG-LTRLKKV 174

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNN 387
            ++DL+             +       L +TN 
Sbjct: 175 NWIDLTGQKC-------VNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 17/188 (9%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           +++    F  L+ L LS+N    +        L  L +L+ L++  N   +   +     
Sbjct: 55  SLAGMQFFTNLKELHLSHNQISDL------SPLKDLTKLEELSVNRNRLKNLNGI---PS 105

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
             L+ L L  N ++       L  LKNLE L + +N +        +  L  L VL+L  
Sbjct: 106 ACLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHG 159

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I +     L  + ++  +D++  +           L     +   D  +   + +S+ 
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217

Query: 301 ANHSKLEV 308
            ++    V
Sbjct: 218 GSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           ++        +Q+ +  N++ + +        +     LK L+L +N   D     L  L
Sbjct: 33  DLVSQKELSGVQNFNGDNSNIQSL------AGMQFFTNLKELHLSHNQISD--LSPLKDL 84

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           T L  L +  N +   +   G+     L  L L +N +    ++  +  LKNL +L++  
Sbjct: 85  TKLEELSVNRNRL---KNLNGIPSA-CLSRLFLDNNELR---DTDSLIHLKNLEILSIRN 137

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
           N ++      L  +++L+VLD+  N+++      ++ L  + ++ L    
Sbjct: 138 NKLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQK 183

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.8 bits (212), Expect = 2e-17
 Identities = 82/413 (19%), Positives = 132/413 (31%), Gaps = 59/413 (14%)

Query: 172 SIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK 231
           SI L +N   SL+      N I G+      S     E   L     N ++     C + 
Sbjct: 2   SIMLPINNNFSLSQN-SFYNTISGTY-ADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
               L L + N+   LP+ L    ++ VL+I+ N L  S P + ++L  L+     DN  
Sbjct: 60  QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLD---ACDNRL 112

Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ 351
             T P    A+                            LK L + N  L ++P      
Sbjct: 113 S-TLP-ELPAS----------------------------LKHLDVDNNQLTMLPELPAL- 141

Query: 352 FDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN 411
             L+Y++  +N L    P       T LEVL + NN  T    LP+     L  LD+S+N
Sbjct: 142 --LEYINADNNQL-TMLPELP----TSLEVLSVRNNQLT---FLPELPES-LEALDVSTN 190

Query: 412 NFTGKLPQDMGIILQ---KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSA 468
                LP             ++     N    +I  +I  +     + L  N  S  +  
Sbjct: 191 LLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 469 ALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVEL 528
           +L        + G      Y  +  G  N             F    +  + +     E 
Sbjct: 249 SLSQQTAQPDYHG---PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEH 305

Query: 529 RMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN 581
              +N  S  +      +S        +        +      R Q F+V+ +
Sbjct: 306 EEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 3e-16
 Identities = 56/290 (19%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE--MKELRFLDLSKNNFSGEL 466
           S  N       D      K     +   +      S + E  + +   L L++ N S  L
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLNLS-SL 74

Query: 467 SAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLV 526
              L      +  L ++ N       P       L+YL   +N+ S  + E       L 
Sbjct: 75  PDNLPPQ---ITVLEITQNAL--ISLPE--LPASLEYLDACDNRLS-TLPELP---ASLK 123

Query: 527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGF 586
            L + +N L+  +P     L Y+       N     +P    +   L++ SV  N L+  
Sbjct: 124 HLDVDNNQLT-MLPELPALLEYINA---DNNQLT-MLPELPTS---LEVLSVRNNQLTFL 175

Query: 587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLT----LDLRDNGFSGVIPHQINECS 642
                   S+E L +  N L   +P    R+ +          R+N  +  IP  I    
Sbjct: 176 PEL---PESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLW 692
               ++L  N L  +I   + Q T           F+ S     T     
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 56/328 (17%), Positives = 110/328 (33%), Gaps = 36/328 (10%)

Query: 357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD-KHDFLHHLDISSNNFTG 415
            +  +N + G           K E   L   +    + L  +   +    L ++  N + 
Sbjct: 15  QNSFYNTISGT-YADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 416 KLPQDMGIILQKLLYMDMSNNHFEGNIASSI-AEMKELRFLDLSKNNFSGELSAALLTSC 474
            LP +   +  ++  ++++ N        S+      L +LD   N  S      L    
Sbjct: 73  SLPDN---LPPQITVLEITQNAL-----ISLPELPASLEYLDACDNRLS-----TLPELP 119

Query: 475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNM 534
            SL  L + +N     + P       L+Y+  +NN+ +  + E       L  L + +N 
Sbjct: 120 ASLKHLDVDNNQL--TMLPE--LPALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQ 171

Query: 535 LSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ----LFSVSENYLSGFMTTS 590
           L+  +P    +L  L+V   S N  E ++P   + +   +     F   EN ++      
Sbjct: 172 LT-FLPELPESLEALDV---STNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226

Query: 591 FNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLR 650
            ++     + L+ N LS  I  +L + +           FS     Q      L   +  
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT- 285

Query: 651 GNNLEGQIPNQICQLTGLGMMDLSHNKF 678
                    + + Q+      +   N F
Sbjct: 286 -AWFPENKQSDVSQIWHAFEHEEHANTF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 7e-13
 Identities = 45/281 (16%), Positives = 86/281 (30%), Gaps = 55/281 (19%)

Query: 593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652
           I+    L L + +LS  +P  L     +  L++  N     +P      ++L +L    N
Sbjct: 58  INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELP---ASLEYLDACDN 110

Query: 653 NLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT-LWSVGNLDRYRLEHLTFVERL 711
            L   +P     L  L   D+ +N+    +P     +  + +  N      E  T +E L
Sbjct: 111 RLS-TLPELPASLKHL---DVDNNQLT-MLPELPALLEYINADNNQLTMLPELPTSLEVL 165

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
            V +  +          L                                + +  LD+S 
Sbjct: 166 SVRNNQL--------TFLPEL----------------------------PESLEALDVST 189

Query: 772 NKLTGEIPSEIGELQ----EIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
           N L   +P+                   N ++  IPE+  +L    ++ L  N LS +I 
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 828 PKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNL 868
             L++     +++      S     +         +     
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 8e-13
 Identities = 49/312 (15%), Positives = 92/312 (29%), Gaps = 55/312 (17%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
             +   L L+  +   + +N          ++ +L +  N              SL  L 
Sbjct: 58  INQFSELQLNRLNLSSLPDNL-------PPQITVLEITQNALISL----PELPASLEYLD 106

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
             +N +             +L+ LD+ +N +   L          L  +N + N +   L
Sbjct: 107 ACDNRLS-----TLPELPASLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLT-ML 155

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
           P      T L+VL +  NQL+   P +  +L +L+       N   + P +    +   E
Sbjct: 156 PELP---TSLEVLSVRNNQLT-FLPELPESLEALD----VSTNLLESLP-AVPVRNHHSE 206

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGA 367
              +                       R     +  IP  +L       + L  N L  +
Sbjct: 207 ETEI---------------------FFRCRENRITHIPENILSLDPTCTIILEDNPLS-S 244

Query: 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK 427
               +L   T           F+ +    +  H  L   D  +  F      D+  I   
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA--DAVTAWFPENKQSDVSQIWHA 302

Query: 428 LLYMDMSNNHFE 439
             + + +N    
Sbjct: 303 FEHEEHANTFSA 314

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 2e-12
 Identities = 49/338 (14%), Positives = 98/338 (28%), Gaps = 44/338 (13%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
             ++  L+++ N+   + E        SL+ L   +   +   +          SL  L 
Sbjct: 79  PPQITVLEITQNALISLPE-----LPASLEYLDACDNRLSTLPELP-------ASLKHLD 126

Query: 188 LRENNIQGSRTKQGL-SKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
           +  N +        L      LE ++  +N +    E        +L VL++  N +   
Sbjct: 127 VDNNQL------TMLPELPALLEYINADNNQLTMLPEL-----PTSLEVLSVRNNQLT-F 174

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE----YLALFDNNFEGTFPLSSLAN 302
           LP    +   L+ LD+S N L  S P++       E    +    +N      P  ++ +
Sbjct: 175 LPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP-ENILS 228

Query: 303 HSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN 362
                 ++L   +N L  +    L     +           +     +       D    
Sbjct: 229 LDPTCTIILE--DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 363 DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMG 422
                  +   Q     E      N+F+  L    D     +            L +   
Sbjct: 287 WFPENKQSDVSQIWHAFE-HEEHANTFSAFLDRLSDTVSARNTSG-FREQVAAWLEK--- 341

Query: 423 IILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKN 460
             L     +   +     +   S  +   L + +L K 
Sbjct: 342 --LSASAELRQQSFAVAADATESCEDRVALTWNNLRKT 377

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 49/337 (14%), Positives = 96/337 (28%), Gaps = 72/337 (21%)

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574
                 K +K      + N     +      ++    L +++     ++P  L     + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPPQ--IT 83

Query: 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVI 634
           +  +++N L          +S+E+L    N LS  +P      ++L  LD+ +N  + ++
Sbjct: 84  VLEITQNALISL---PELPASLEYLDACDNRLST-LPELP---ASLKHLDVDNNQLT-ML 135

Query: 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694
           P      + L ++    N L   +P     L  L    + +N+    +P    +      
Sbjct: 136 PELP---ALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPELPES------ 181

Query: 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYE 754
                  LE L     +  N +                E  P                  
Sbjct: 182 -------LEAL----DVSTNLL----------------ESLPAVPVRNH----------- 203

Query: 755 VYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIES 814
                + +  +      N++T  IP  I  L     + +  N LS  I ES S       
Sbjct: 204 ----HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ--TAQ 256

Query: 815 LDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
            D    R+   +             +           
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 59/254 (23%)

Query: 604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINEC--SNLRFLLLRGNNLEGQIPNQ 661
           N++SG      F + +                  + EC  +    L L   NL   +P+ 
Sbjct: 20  NTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDN 77

Query: 662 ICQ-LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRL-EHLTFVERLDVNSIGIY 719
           +   +T L   +++ N    S+P    ++      +     L E    ++ LD       
Sbjct: 78  LPPQITVL---EITQNAL-ISLPELPASLEYLDACDNRLSTLPELPASLKHLD------- 126

Query: 720 YSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP 779
               +D  QL+     P                      + L+Y   ++   N+LT  +P
Sbjct: 127 ----VDNNQLTMLPELP----------------------ALLEY---INADNNQLT-MLP 156

Query: 780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN- 838
                L+    L++ +N L+  +PE   +L   E+LD+S N L   +P      +     
Sbjct: 157 ELPTSLEV---LSVRNNQLTF-LPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEET 208

Query: 839 ---FNVSYNNLSGL 849
              F    N ++ +
Sbjct: 209 EIFFRCRENRITHI 222

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 14/91 (15%)

Query: 765 VGLDLSCNKLTG---EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR 821
           +  +   N ++G   +  S   + ++  +   + N     + E    +     L L+   
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLN 70

Query: 822 LS---GQIPPKLTELNFLSNFNVSYNNLSGL 849
           LS     +PP++T L       ++ N L  L
Sbjct: 71  LSSLPDNLPPQITVL------EITQNALISL 95

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 3e-17
 Identities = 56/288 (19%), Positives = 88/288 (30%), Gaps = 19/288 (6%)

Query: 264 FNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS--TRNNMLQVQ 321
           FN L  +   +     SLEYL    +        + +     L+ L +      + +   
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 322 TENFLPTFQLKVLRLPNCSLNVIPPFLLHQF---DLKYLDLSHNDLDGAFP-TWALQN-- 375
               L    L+ L L N  +    P  L +    DL  L+L +            LQ   
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII---LQKLLYMD 432
              L+VL +                  L  LD+S N   G+      +       L  + 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 433 MSNNHFE---GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG 489
           + N   E   G  ++  A   +L+ LDLS N+      A        L  L LS      
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266

Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSG 537
           ++  G     +L  L L  N+         L    +  L +  N    
Sbjct: 267 QVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQ--VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 7e-16
 Identities = 54/324 (16%), Positives = 93/324 (28%), Gaps = 70/324 (21%)

Query: 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC---LNNMTRLKVLD 261
            ++LE L    +      +   I +  +L  L +    I   +      +  ++ L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 262 ISFNQLSGSFPSIISNLT--SLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ 319
           +   +++G+ P  +   T   L  L L + ++       +                    
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA-------------------- 141

Query: 320 VQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFP---TWALQN 375
            + + +L    LKVL +            +  F  L  LDLS N   G            
Sbjct: 142 -ELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 376 NTKLEVLLLTNNSFT---GNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
              L+VL L N       G           L  LD+S N+              +L  ++
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 433 MSNNHFE---GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG 489
           +S    +     + +       L  LDLS N                             
Sbjct: 260 LSFTGLKQVPKGLPAK------LSVLDLSYNRLDR------------------------- 288

Query: 490 RIFPGYMNLTQLQYLYLENNKFSG 513
              P    L Q+  L L+ N F  
Sbjct: 289 --NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 45/215 (20%), Positives = 70/215 (32%), Gaps = 17/215 (7%)

Query: 87  NATTGRVIQLLLNDTSKFIEY--SKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGV 144
              TG     LL  T   +     +N ++      L          L+ L ++       
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 145 YENQAYDTLGSLKRLKILNLGYNYFDDSIFLY----LNALTSLTTLILRENNIQ--GSRT 198
              Q    +     L  L+L  N       L          +L  L LR   ++      
Sbjct: 165 SCEQ----VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 199 KQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLK 258
               +    L+ LDLS N +  +  +        L  LNL    +   +P  L    +L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL--PAKLS 277

Query: 259 VLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEG 293
           VLD+S+N+L    PS    L  +  L+L  N F  
Sbjct: 278 VLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 8e-15
 Identities = 60/329 (18%), Positives = 90/329 (27%), Gaps = 61/329 (18%)

Query: 293 GTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQF 352
           G   +        LE LL          Q  + + +  LK L +    +     F   + 
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 353 ----DLKYLDLSHNDLDG-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD 407
                L+ L L + ++ G A P         L +L L N S+        +   +L    
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK--- 148

Query: 408 ISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS 467
                               L  + ++  H        +     L  LDLS N   GE  
Sbjct: 149 ------------------PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 468 ---AALLTSCFSLLWLGLSDNNF---YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGL-L 520
              A       +L  L L +       G          QLQ L L +N            
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 521 KSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE 580
              +L  L +S   L   +P   G  + L VL +S N  + N     L            
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDRNPSPDEL------------ 295

Query: 581 NYLSGFMTTSFNISSVEHLYLQKNSLSGP 609
                          V +L L+ N     
Sbjct: 296 -------------PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 3e-14
 Identities = 62/301 (20%), Positives = 97/301 (32%), Gaps = 36/301 (11%)

Query: 150 YDTLGSLKRLKILNLGYN-YFDDSIFLYLNALTSLTTLILRENNIQGSRTKQ-----GLS 203
            +  G  + L+ L    +   D   F  +    SL  L +R   I            G+S
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 204 KLKNLEALDLS-SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNN-MTRLKVLD 261
            L+ L   +L  +      L      +L  L + N+     +  L          LKVL 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 262 ISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVL-LLSTRNNMLQV 320
           I+           +    +L  L L DN   G   L S     K   L +L+ RN  ++ 
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME- 214

Query: 321 QTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHNDLDGAFPTWALQNNTKL 379
                              + + +   L      L+ LDLSHN L  A    +    ++L
Sbjct: 215 -------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 380 EVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE 439
             L L+        Q+P      L  LD+S N      P      L ++  + +  N F 
Sbjct: 256 NSLNLSFTGLK---QVPKGLPAKLSVLDLSYNRLDR-NPSPDE--LPQVGNLSLKGNPFL 309

Query: 440 G 440
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 55/316 (17%), Positives = 94/316 (29%), Gaps = 57/316 (18%)

Query: 544 GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF----NISSVEHL 599
           G  S   +L       +      ++    L+  +V    +   +         IS ++ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 600 YLQKNSLSG--PIPIALFRSSNLLTLDLRDNGFSGVIPH----QINECSNLRFLLLRGNN 653
            L+   ++G  P P+      +L  L+LR+  ++         Q      L+ L +   +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDV 713
                  Q+     L  +DLS N   G          + ++  L    L+ L        
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGL------ISALCPLKFPTLQVLAL------ 208

Query: 714 NSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK 773
                       M   S                              L     LDLS N 
Sbjct: 209 --------RNAGMETPSGVCSALAA------------------ARVQLQG---LDLSHNS 239

Query: 774 LTGEIPSEIGE-LQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE 832
           L     +   +   ++  LN+S   L +      + L     LDLS+NRL     P   E
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR--NPSPDE 294

Query: 833 LNFLSNFNVSYNNLSG 848
           L  + N ++  N    
Sbjct: 295 LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 47/228 (20%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 118 LSLNVSLFHPFEELQSLDLSNNSFEG-VYENQAYDTLGSLKRLKILNLGYNYFDDSIF-L 175
           +            LQ L L N    G         T   L  L + N+ +   D  +  L
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFING------SLESQGICE 229
                  L  L + + +      +Q +     L  LDLS N   G      +L       
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 230 LKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSII-SNLTSLEYLALFD 288
           L+ L + N                  +L+ LD+S N L  +  +      + L  L L  
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 289 NNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
              +           +KL VL LS  N + +  + + LP  Q+  L L
Sbjct: 263 TGLKQVPKGLP----AKLSVLDLS-YNRLDRNPSPDELP--QVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 9/157 (5%)

Query: 117 VLSLNVSLFHPFEELQSLDLSNNSFEG---VYENQAYDTLGSLKRLKILNLGYNYFDDSI 173
            L+ +      F  L +LDLS+N   G   +          +L+ L + N G        
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 174 FLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL 233
                A   L  L L  N+++ +           L +L+LS       L+         L
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT----GLKQVPKGLPAKL 276

Query: 234 FVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGS 270
            VL+L  N ++   P+    + ++  L +  N    S
Sbjct: 277 SVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWM---GNLSYLEVLL 553
             +    L   + +        ++KS  L  L + +  +   I         +S L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 554 MSKNFFEGNIPVQLLN--HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG--- 608
           +      G  P  LL      L + ++     +        +       L+  S++    
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 609 -PIPIALFRS-SNLLTLDLRDNGFSGVIPHQINEC----SNLRFLLLRGNNLE---GQIP 659
                   R    L TLDL DN   G        C      L+ L LR   +E   G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 660 NQICQLTGLGMMDLSHNKFNGSIPS 684
                   L  +DLSHN    +  +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFS----NLKMIESLDLSHNR- 821
           L ++          ++     +  L++S N          +        ++ L L +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 822 --LSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
              SG           L   ++S+N+L      
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 19/203 (9%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            L    F  F ELQ LDLS    + + E+ AY    SL  L  L L  N         F 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHLSTLILTGNPIQSLALGAF- 96

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICE-LKNLF 234
             + L+SL  L+  E N+  S     +  LK L+ L+++ N I  S +       L NL 
Sbjct: 97  --SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLE 152

Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKV----LDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
            L+L  N I+      L  + ++ +    LD+S N ++            L+ LAL  N 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ 211

Query: 291 FEGTFPLSSLANHSKLEVLLLST 313
            + + P       + L+ + L T
Sbjct: 212 LK-SVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 27/219 (12%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
           + + LDLS N +   L S        L VL+L +  I+        +++ L  L ++ N 
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN-- 324
           +        S L+SL+ L   + N   +     + +   L+ L ++  +N++Q       
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA--HNLIQSFKLPEY 144

Query: 325 FLPTFQLKVLRLPNCSLNVIPPFLLH-----QFDLKYLDLSHNDL----DGAFPTWALQN 375
           F     L+ L L +  +  I    L            LDLS N +     GAF       
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------K 198

Query: 376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLH---HLDISSN 411
             +L+ L L  N       +PD   D L     + + +N
Sbjct: 199 EIRLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 50/238 (21%), Positives = 81/238 (34%), Gaps = 38/238 (15%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
              K LD+SFN L         +   L+ L L     + T    +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84

Query: 315 NNMLQ-VQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ-FDLKYLDLSHNDL-----DGA 367
            N +Q +    F     L+ L     +L  +  F +     LK L+++HN +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK 427
           F      N T LE L L++N       +       LH + + +                 
Sbjct: 145 F-----SNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLN----------------- 179

Query: 428 LLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDN 485
            L +D+S N     I     +   L+ L L  N     +   +     SL  + L  N
Sbjct: 180 -LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 54/263 (20%), Positives = 89/263 (33%), Gaps = 57/263 (21%)

Query: 562 NIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRS-SN 619
           N+P      + L L   S N L    + SF +   ++ L L +  +   I    ++S S+
Sbjct: 25  NLPFST---KNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN 679
           L TL L  N    +     +  S+L+ L+    NL       I  L  L  ++++HN   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 680 GSIPS--CFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPF 737
            S      F+N+T           LEHL     L  N             ++ S      
Sbjct: 138 -SFKLPEYFSNLT----------NLEHLD----LSSN-------------KIQSIYCT-- 167

Query: 738 TFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNF 797
               L ++  +  +               LDLS N +   I     +   +  L +  N 
Sbjct: 168 DLRVLHQMPLLNLS---------------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQ 211

Query: 798 LSESIPESFSNLKMIESLDLSHN 820
           L       F  L  ++ + L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 37/212 (17%)

Query: 353 DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNN 412
             K LDLS N L     +++  +  +L+VL L+                      I    
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ----------------TIEDGA 71

Query: 413 FTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI-AEMKELRFLDLSKNNFSGELSAALL 471
           +           L  L  + ++ N  + ++A    + +  L+ L   + N +  L    +
Sbjct: 72  YQS---------LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPI 120

Query: 472 TSCFSLLWLGLSDNNFYGRIFPGY-MNLTQLQYLYLENNKFSGKIEEGLLKS-----KKL 525
               +L  L ++ N       P Y  NLT L++L L +NK    I    L+         
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
           + L +S N ++  I         L+ L +  N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 17/190 (8%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSK 556
              + L L  N     +      S  +L  L +S   +   I      +LS+L  L+++ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 557 N---FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI-SSVEHLYLQKNSL-SGPIP 611
           N            L + ++L      E  L+           +++ L +  N + S  +P
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVA---VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 612 IALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRF----LLLRGNNLEGQIPNQICQLTG 667
                 +NL  LDL  N    +    +     +      L L  N +   I     +   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 668 LGMMDLSHNK 677
           L  + L  N+
Sbjct: 202 LKELALDTNQ 211

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           +    L L  NN+   R +   ++L NL +L LS N +N  + S+    + NL  L+L  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLS----GSFPSIISNLTSLEYLALFDNNFEGTFP 296
           N++        +++  L+VL +  N +      +F     ++  L+ L L  N     FP
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF----EDMAQLQKLYLSQNQIS-RFP 152

Query: 297 LSSLANHSKLEVL-LLSTRNNMLQ---VQTENFLPTFQLKVLRL 336
           +  + + +KL  L LL   +N L+   +     LP +    L L
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)

Query: 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILR 189
               LDLS+N                     +  L   +           LT+L +L+L 
Sbjct: 40  YTALLDLSHN--------------------NLSRLRAEWT-------PTRLTNLHSLLLS 72

Query: 190 ENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPN 249
            N++    + +    + NL  LDLSSN ++ +L+     +L+ L VL L  N+I     N
Sbjct: 73  HNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRN 130

Query: 250 CLNNMTRLKVLDISFNQLS----GSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSK 305
              +M +L+ L +S NQ+S           + L  L  L L  N  +   PL+ L     
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSSNKLK-KLPLTDLQKLPA 188

Query: 306 LEVLLLSTRNN 316
                L   NN
Sbjct: 189 WVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 235 VLNLEKNNIEDHLPNC-LNNMTRLKVLDISFNQLS----GSFPSIISNLTSLEYLALFDN 289
           +L+L  NN+           +T L  L +S N L+     +F      + +L YL L  N
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----VPVPNLRYLDLSSN 98

Query: 290 NFEGTFPLSSLANHSKLEVLLLSTRNNMLQ-VQTENFLPTFQLKVLRLPNCSLNVIPPFL 348
           +   T      ++   LEVLLL   NN +  V    F    QL+ L L    ++  P  L
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLY--NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 349 LHQFD----LKYLDLSHNDLDGAFPTWALQNNTKL--EVLLLTNNSFT 390
           +   +    L  LDLS N L    P   LQ         L L NN   
Sbjct: 156 IKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNALT 181
                 L SL LS+N    +    + +    +  L+ L+L  N     D+ +F   + L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNFI----SSEAFVPVPNLRYLDLSSNHLHTLDEFLF---SDLQ 112

Query: 182 SLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLES---QGICELKNLFVLNL 238
           +L  L+L  N+I           +  L+ L LS N I+        +   +L  L +L+L
Sbjct: 113 ALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFN 265
             N ++      L  +       +  +
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 47/199 (23%), Positives = 67/199 (33%), Gaps = 33/199 (16%)

Query: 340 SLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDK 399
            L  +P  L        LDLSHN+L      W     T L  LLL++N            
Sbjct: 29  QLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------- 77

Query: 400 HDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSK 459
                   ISS  F           +  L Y+D+S+NH         ++++ L  L L  
Sbjct: 78  -------FISSEAFVP---------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 460 NNFSGELSAALLTSCFSLLWLGLSDNN---FYGRIFPGYMNLTQLQYLYLENNKFSGKIE 516
           N+    +          L  L LS N    F   +      L +L  L L +NK      
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 517 EGL--LKSKKLVELRMSSN 533
             L  L +     L + +N
Sbjct: 181 TDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 37/183 (20%)

Query: 480 LGLSDNNFYGRIFPGYM--NLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLS 536
           L LS NN   R+   +    LT L  L L +N  +  I          L  L +SSN L 
Sbjct: 44  LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 537 GHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NIS 594
             +  ++  +L  LEVLL+  N                 +  V  N        +F +++
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNN----------------HIVVVDRN--------AFEDMA 136

Query: 595 SVEHLYLQKNSLSGPIPIALFRS----SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLR 650
            ++ LYL +N +S   P+ L +       L+ LDL  N    +    + +        L 
Sbjct: 137 QLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 651 GNN 653
            +N
Sbjct: 196 LHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 13/129 (10%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            ++   F P   L+ LDLS+N    + E         L+ L++L L  N     D + F 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVVVDRNAF- 132

Query: 176 YLNALTSLTTLILRENNIQG--SRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL 233
               +  L  L L +N I        +  +KL  L  LDLSSN +   L    + +L   
Sbjct: 133 --EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAW 189

Query: 234 FVLNLEKNN 242
               L  +N
Sbjct: 190 VKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 759 SNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPE-SFSNLKMIESLD 816
             +  +  LDLS N L   +   +  +LQ + VL + +N +   +   +F ++  ++ L 
Sbjct: 85  VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 817 LSHNRLSGQIPPK----LTELNFLSNFNVSYNNLSGLIPD 852
           LS N++S + P +      +L  L   ++S N L  L   
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
           +L+  LF   + L+ L L NN    V +  A++ +  L++L    L  N    F   +  
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKL---YLSQNQISRFPVELIK 157

Query: 176 YLNALTSLTTLILRENNIQG--SRTKQGLSKLKNLEALDLSSN 216
             N L  L  L L  N ++       Q L        L L +N
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV-KNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652
           S    L L  N+LS           +NL +L L  N  + +         NLR+L L  N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 653 NLEGQIPNQICQ-LTGLGMMDLSHNK 677
           +L   +   +   L  L ++ L +N 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNH 123

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 43/331 (12%), Positives = 107/331 (32%), Gaps = 68/331 (20%)

Query: 200 QGLSKLKNLEALDLSSNFINGSLESQGICEL-----KNLFVLNLEKNNIED----HLPNC 250
           +  S    + +LDLS N +  S+ +  + +       ++  LNL  N++       L   
Sbjct: 16  EFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 251 L-NNMTRLKVLDISFNQLSGS-----FPSIISNLTSLEYLALFDNNF--EGTFPLSS--L 300
           L      +  L++S N LS         ++ +   ++  L L  N+F  + +        
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
              + +  L L    N L +++ + L    +++L     ++               L+L 
Sbjct: 135 NLPASITSLNLR--GNDLGIKSSDEL----IQILAAIPANV-------------NSLNLR 175

Query: 361 HNDL--DGAFPTWAL-----QNNTKLEVLLLTNNSFTGN-----LQLPDDKHDFLHHLDI 408
            N+L          L          +  L L+ N            +     + +  L++
Sbjct: 176 GNNLASKNC---AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232

Query: 409 SSNNFTGKLPQDMGIILQK---LLYMDMSNNHFEG-------NIASSIAEMKELRFLDLS 458
             N   G   +++ ++      L  + +  +  +         + ++   ++++  +D +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 459 KNNFSGE----LSAALLTSCFSLLWLGLSDN 485
                      +S  +           L + 
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 54/327 (16%), Positives = 105/327 (32%), Gaps = 57/327 (17%)

Query: 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKR-LKILNLGYNYFDDSIFLYL-NAL- 180
             +    + SL+LS NS      ++    L ++   +  LNL  N+        L   L 
Sbjct: 46  FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105

Query: 181 ---TSLTTLILRENNIQGSRTK---QGLSKL-KNLEALDLSSNFINGSLESQGICEL--- 230
               ++T L L  N+     +    Q  S L  ++ +L+L  N + G   S  + ++   
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAA 164

Query: 231 --KNLFVLNLEKNNIED----HLPNCL-NNMTRLKVLDISFNQLSGSFPSII-----SNL 278
              N+  LNL  NN+       L   L +    +  LD+S N L     + +     S  
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 279 TSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLR 335
             +  L L  N         L     +   L+ + L    ++++  ++            
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD--YDIVKNMSKEQCKAL---GAA 279

Query: 336 LPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWAL-----QNNTKLEVLLLTNNSFT 390
            PN               +  +D +  ++     +  +     + + K +V  L N    
Sbjct: 280 FPNIQ------------KIILVDKNGKEI-HPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 391 GNLQLPDD-----KHDFLHHLDISSNN 412
              +   +       D L     +   
Sbjct: 327 FAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 52/273 (19%)

Query: 123 SLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL-KRLKILNLGYNYFDDSIFLYL-NAL 180
           +L      +  LDL  N F     ++      +L   +  LNL  N         L   L
Sbjct: 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162

Query: 181 ----TSLTTLILRENNIQGSRTKQGLSKL-----KNLEALDLSSNFINGSLESQGICEL- 230
                ++ +L LR NN+  S+    L+K       ++ +LDLS+N + G      +  + 
Sbjct: 163 AAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIF 220

Query: 231 ----KNLFVLNLEKNNIED----HLPNCLNNMTRLKVLDISFNQLSGSFP-------SII 275
                ++  LNL  N +      +L    +++  L+ + + ++ +            +  
Sbjct: 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280

Query: 276 SNLTSLEYLALFDNNF--EGTFPLSSLA--NHSKLEVLLLSTRNNMLQVQTENFLPTFQL 331
            N+  +  +           + P+S+L      K +V  L         Q   F    Q 
Sbjct: 281 PNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN-------QCLIFAQKHQT 333

Query: 332 KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL 364
            +  L                +L+    +   L
Sbjct: 334 NIEDLNIPD------------ELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 47/336 (13%), Positives = 91/336 (27%), Gaps = 87/336 (25%)

Query: 372 ALQNNTKLEVLLLTNNSFTGN--------LQLPDDKHDFLHHLDISSNNFTGKLPQDMGI 423
                  +  L L+ N+                      +  L++S N+   K   ++  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPAS---VTSLNLSGNSLGFKNSDELVQ 73

Query: 424 ILQK----LLYMDMSNNHFEGNIASSIAEM-----KELRFLDLSKNNFSGE----LSAAL 470
           IL      +  +++S N      +  + +        +  LDL  N+FS +       A 
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 471 LTSCFSLLWLGLSDNNFYGR----IFPGYMNL-TQLQYLYLENNKFSGK----IEEGLLK 521
                S+  L L  N+   +    +      +   +  L L  N  + K    + + L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 522 -SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE 580
               +  L +S+N+L                         G      L            
Sbjct: 194 IPASVTSLDLSANLL-------------------------GLKSYAEL------------ 216

Query: 581 NYLSGFMTTSFNISSVEHLYLQKNSLSGP----IPIALFRSSNLLTLDLRDNGFSGV--- 633
                F +     + V  L L  N L GP    + +      +L T+ L  +    +   
Sbjct: 217 --AYIFSS---IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 634 ----IPHQINECSNLRFLLLRGNNLEGQIPNQICQL 665
               +         +  +   G  +       I  L
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 39/241 (16%), Positives = 82/241 (34%), Gaps = 43/241 (17%)

Query: 108 SKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSF--EGVYENQAYDTLGSL-----KRLK 160
             N            +  +    + SL+L  N    +   E      L  +       + 
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE------LIQILAAIPANVN 170

Query: 161 ILNLGYNYFDDSIFLYL-NAL----TSLTTLILRENNIQGSRTKQGLSKL-----KNLEA 210
            LNL  N         L   L     S+T+L L  N + G ++   L+ +      ++ +
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVS 229

Query: 211 LDLSSNFINGS---LESQGICELKNLFVLNLEKNNIED-------HLPNCLNNMTRLKVL 260
           L+L  N ++G            LK+L  + L+ + +++        L     N+ ++ ++
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 261 DISFNQLSGSFPSIISNL-----TSLEYLALFDNNF----EGTFPLSSLANHSKLEVLLL 311
           D +  ++  S    ISNL        +  +L +       +    +  L    +L   + 
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQ 349

Query: 312 S 312
           +
Sbjct: 350 T 350

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 49/301 (16%), Positives = 92/301 (30%), Gaps = 60/301 (19%)

Query: 433 MSNNHFEGNIASSIAEMKE----LRFLDLSKNNFSGE----LSAALLTSCFSLLWLGLSD 484
           M+        ++ + E       +  LDLS NN        L  A   +  S+  L LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 485 NNFYGRIFPGYMNL--------TQLQYLYLENNKFSGK----IEEGLLKSK-KLVELRMS 531
           N+   +       L          +  L L  N  S K    + + L      +  L + 
Sbjct: 61  NSLGFK---NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117

Query: 532 SNMLSG----HIPHWMGNL-SYLEVLLMSKNFFEGNIPVQLL------NHRRLQLFSVSE 580
            N  S            NL + +  L +  N   G      L          +   ++  
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRG 176

Query: 581 NYLS-------GFMTTSFNISSVEHLYLQKNSL--SGPIPIA---LFRSSNLLTLDLRDN 628
           N L+            S   +SV  L L  N L       +A       +++++L+L  N
Sbjct: 177 NNLASKNCAELAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 629 GFSGV----IPHQINECSNLRFLLLRGNNLEGQIPNQ-------ICQLTGLGMMDLSHNK 677
              G     +    +   +L+ + L  + ++     Q          +  + ++D +  +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 678 F 678
            
Sbjct: 296 I 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
            +  + L LS N+ E +       +L  ++ L+IL+LG N     I        +L  L 
Sbjct: 47  LKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 99

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           +  N I    +  G+ KL NL  L +S+N I    E   +  L  L  L L  N + +  
Sbjct: 100 ISYNQI---ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 248 PNC----------LNNMTRLKVLD 261
                        +  +  LK LD
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 67.4 bits (165), Expect = 8e-13
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 144 VYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLS 203
           ++E +        ++++ L+      +  +   L+ L +   L L  NNI+       LS
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLS 67

Query: 204 KLKNLEALDLSSNFIN--GSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLD 261
            ++NL  L L  N I    +L++        L  L +  N I   L   +  +  L+VL 
Sbjct: 68  GMENLRILSLGRNLIKKIENLDAV----ADTLEELWISYNQIAS-LSG-IEKLVNLRVLY 121

Query: 262 ISFNQLSGSFPSI--ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
           +S N+++ ++  I  ++ L  LE L L  N     +  ++  +  ++EV+ 
Sbjct: 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED 245
           L      I   +    LS LK  + L LS+N I   +    +  ++NL +L+L +N I+ 
Sbjct: 30  LHGMIPPI--EKMDATLSTLKACKHLALSTNNI-EKIS--SLSGMENLRILSLGRNLIKK 84

Query: 246 HLPNCLNNMTRLKVLDISFNQLSGSFPSI--ISNLTSLEYLALFDNNFEGTFPLSSLANH 303
            + N       L+ L IS+NQ++    S+  I  L +L  L + +N       +  LA  
Sbjct: 85  -IENLDAVADTLEELWISYNQIA----SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 304 SKLEVLLLS 312
            KLE LLL+
Sbjct: 140 DKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 38/183 (20%)

Query: 222 LESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI--ISNLT 279
            +S    E + +  L+     IE  +   L+ +   K L +S N +      I  +S + 
Sbjct: 17  RKSVVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE----KISSLSGME 70

Query: 280 SLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL-RLPN 338
           +L  L+L  N  +    L ++A+   LE L +S   N +            L  + +L N
Sbjct: 71  NLRILSLGRNLIKKIENLDAVAD--TLEELWIS--YNQIA----------SLSGIEKLVN 116

Query: 339 CSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD 398
                          L+ L +S+N +        L    KLE LLL  N    + +  + 
Sbjct: 117 ---------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

Query: 399 KHD 401
             +
Sbjct: 162 TSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 10/133 (7%)

Query: 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
           + + +       E  + ++++ +K  + L LS NN       + L+   +L  L L  N 
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNL 81

Query: 487 FYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS--GHIPHWMG 544
              +I         L+ L++  N+ +  +  G+ K   L  L MS+N ++  G I   + 
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDK-LA 137

Query: 545 NLSYLEVLLMSKN 557
            L  LE LL++ N
Sbjct: 138 ALDKLEDLLLAGN 150

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 10/171 (5%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLN 178
           + +++   P+  L  L+L                 G+L  L  L+L +N    S+ L   
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQ 97

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
            L +LT L +  N +  S     L  L  L+ L L  N +  +L    +     L  L+L
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
             NN+ +     LN +  L  L +  N L  + P        L +  L  N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 15/178 (8%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD-SIFLYLNALTSLTTL 186
            ++   L LS N            TL    RL  LNL         +      L  L TL
Sbjct: 30  PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTL 82

Query: 187 ILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH 246
            L  N +Q          L  L  LD+S N +  SL    +  L  L  L L+ N ++  
Sbjct: 83  DLSHNQLQSLPL--LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139

Query: 247 LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF----EGTFPLSSL 300
            P  L    +L+ L ++ N L+     +++ L +L+ L L +N+     +G F    L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 48/258 (18%), Positives = 81/258 (31%), Gaps = 65/258 (25%)

Query: 589 TSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLL 648
               ++S   +   K +L+  +P  L    +   L L +N         +   + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 649 LRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFV 708
           L    L          L  LG +DLSHN+   S+P     +            L  L   
Sbjct: 62  LDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLP----------ALTVL--- 105

Query: 709 ERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLD 768
             +  N             +L+S   G      L                  L     L 
Sbjct: 106 -DVSFN-------------RLTSLPLG--ALRGLG----------------ELQE---LY 130

Query: 769 LSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPES-FSNLKMIESLDLSHNRLSGQI 826
           L  N+L   +P  +     ++  L++++N L+  +P    + L+ +++L L  N L   I
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-I 187

Query: 827 PP------KLTELNFLSN 838
           P        L       N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 51/221 (23%), Positives = 80/221 (36%), Gaps = 25/221 (11%)

Query: 248 PNC-LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
           P C ++ +     ++     L+ + P  +        L L +N    TF L++L  +++L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRL 57

Query: 307 EVLLLSTRNNMLQVQTENFLPTF----QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN 362
             L L      L       L        L  L L +  L  +P        L  LD+S N
Sbjct: 58  TQLNLD--RAELTK-----LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 363 DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD---DKHDFLHHLDISSNNFTGKLPQ 419
            L  + P  AL+   +L+ L L  N       LP         L  L +++NN T +LP 
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELK---TLPPGLLTPTPKLEKLSLANNNLT-ELPA 165

Query: 420 DMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKN 460
            +   L+ L  + +  N     I         L F  L  N
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 39/207 (18%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
              L +S N           +   +L  +++               +  L  LDLS N  
Sbjct: 33  TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQL 89

Query: 463 SGELSAAL--LTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENNKFSGKIEEGL 519
              L      L +   L  L +S N     +  G    L +LQ LYL+ N+    +  GL
Sbjct: 90  Q-SLPLLGQTLPA---LTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 520 LKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFS 577
           L    KL +L +++N L+  +P  +   L  L+ LL+ +N                 L++
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN----------------SLYT 186

Query: 578 VSENYLSGFMTTSFNISSVEHLYLQKN 604
           + +          F    +   +L  N
Sbjct: 187 IPKG--------FFGSHLLPFAFLHGN 205

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 52/286 (18%), Positives = 91/286 (31%), Gaps = 35/286 (12%)

Query: 131 LQSLDLSNNSF--EGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL-NALTSLTTLI 187
           L+ L+L+             A         L  +NL     D +    L         L 
Sbjct: 74  LRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 188 LRENNIQGSRTK---QGLSKLK-NLEALDLSSNFINGS---LESQGICELKNLFVLNLEK 240
           L+ N++     K     L   +  +  L LS+N +  +   +  +G+    ++  L+L  
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192

Query: 241 NNIED----HLPNCLNNMTRLKVLDISFNQLSGS----FPSIISNLTSLEYLALFDNNF- 291
             + D     L   L+   +L+ L++++N    +             SLE L L+ N   
Sbjct: 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

Query: 292 -EGTFPLSSL--ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFL 348
            EG   L  L  A      V++  T    +       L     +V R  N         +
Sbjct: 253 SEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL----SEVQRNLNSWDRA---RV 305

Query: 349 LHQFDLKYLDLSHNDLDGAFPTW----ALQNNTKLEVLLLTNNSFT 390
               +L   DL  +        W     L+   ++  LL    S  
Sbjct: 306 QRHLELLLRDLEDSRG-ATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 55/349 (15%), Positives = 116/349 (33%), Gaps = 64/349 (18%)

Query: 151 DTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKL----- 205
             L   + L  L   Y + +         L+SL  L L    +        ++ +     
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQR--FSAEVLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGR 100

Query: 206 KNLEALDLSSNFINGSLESQGICE-LKNLFVLNLEKNNIED----HLPNCL-NNMTRLKV 259
             L+ ++L+S  +      + +         L L+ N++       L + L ++  ++  
Sbjct: 101 HALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 260 LDISFNQLSGS-----FPSIISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLL 311
           L +S N L+ +        +  N TS+ +L+L       EG   L++ L  + +L+ L +
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 312 STRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL--DGAF- 368
           +   N         L     +  R  + SL             + L L  N+L  +G   
Sbjct: 219 A--YNGAGDTAALAL----ARAAR-EHPSL-------------ELLHLYFNELSSEGRQV 258

Query: 369 ---PTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIIL 425
                 A +   ++ V L    + +      +     L  +  + N++     Q      
Sbjct: 259 LRDLGGAAEGGARVVVSLTEGTAVS------EYWSVILSEVQRNLNSWDRARVQRH---- 308

Query: 426 QKLLYMDMSNNHFEGNIASSIAEM----KELRFLDLSKNNFSGELSAAL 470
            +LL  D+ ++          A++     E+R L     +      +  
Sbjct: 309 LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWS 357

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 40/204 (19%)

Query: 124 LFHPFEELQSLDLSNNSF--EGVYENQA-YDTLGSLKRLKILNLGYNYFDD----SIFLY 176
           L H   ++ +L LSNN     GV       + L     +  L+L +    D     +   
Sbjct: 150 LLHDQCQITTLRLSNNPLTAAGV---AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206

Query: 177 LNALTSLTTLILRENNIQGSRTK---QGLSKLKNLEALDLSSNFINGSLESQGICE---- 229
           L+    L  L +  N    +      +   +  +LE L L  N +  S   Q + +    
Sbjct: 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL-SSEGRQVLRDLGGA 265

Query: 230 ---LKNLFVLNLEKNNIEDH---------------LPNCLNNMTRLKVLDISFNQLSGSF 271
                 + V   E   + ++                   +     L + D+  ++ +   
Sbjct: 266 AEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLN 325

Query: 272 PSIISNL----TSLEYLALFDNNF 291
           P   + L      +  L     + 
Sbjct: 326 PWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 43/284 (15%), Positives = 84/284 (29%), Gaps = 57/284 (20%)

Query: 424 ILQKLLYMDMSNNHFEGNIASSIAEM-----KELRFLDLSKNNFSGELSAALLTSCFSLL 478
           +L  L  ++++         + +A +       L  ++L+           LL       
Sbjct: 70  VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 479 WLGLSDNNFYGRIFPGYM--------NLTQLQYLYLENNKFSGK----IEEGLLKSKKLV 526
            LGL  N+                  +  Q+  L L NN  +      + EGL  +  + 
Sbjct: 130 KLGLQLNSLGPE---ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 527 ELRMSSNMLS----GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL-----NHRRLQLFS 577
            L +    L       +   +     L+ L ++ N   G+     L      H  L+L  
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLH 245

Query: 578 VSEN--------YLSGFMTTSFNISSVEHLYLQKNSLS---------------GPIPIAL 614
           +  N         L      +   + V     +  ++S                     +
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305

Query: 615 FRSSNLLTLDLRDNGFSGVIPHQINEC----SNLRFLLLRGNNL 654
            R   LL  DL D+  + + P +  +       +R LL +  + 
Sbjct: 306 QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 29/211 (13%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY-MNLTQLQYLYLENN 509
             + L L + +    + +   ++  ++  + +S +    ++      NL+++ ++ + N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 510 KFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPH--WMGNLSYLEVLLMSKNFFEGNIPVQ 566
           +    I+   LK    L  L + +  L    P    + +     +L ++ N         
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN--------- 140

Query: 567 LLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLR 626
                   + S+  N   G        +    L L  N  +  +    F  + L  + L 
Sbjct: 141 ------PYMTSIPVNAFQGL------CNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187

Query: 627 DNGFSGVIPHQI--NECSNLRFLLLRGNNLE 655
            N +  VI         S    L +   ++ 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 25/199 (12%), Positives = 60/199 (30%), Gaps = 17/199 (8%)

Query: 119 SLNVSLFHPFEELQSLDLS-NNSFEGVYENQAYDTLGSLKRLKILNLGYN----YFDDSI 173
           ++    F     +  + +S + + + +  +    +  +L ++  + +       Y D   
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDA 100

Query: 174 FLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKN- 232
                 L  L  L +    ++       +        L+++ N    S+       L N 
Sbjct: 101 L---KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 233 LFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPS-IISNLTS-LEYLALFDNN 290
              L L  N     +     N T+L  + ++ N+            + S    L +   +
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 291 FEGTFPLSSLANHSKLEVL 309
                P   L +  +L   
Sbjct: 217 VT-ALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 13/211 (6%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
              + L +    L        SNL ++  + +  +         S  N SK+  + +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP--FLLHQFDLKYLDLSHNDLDGAFPTWA 372
            N+  +  +       LK L + N  L + P    +        L+++ N    + P  A
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 373 LQN-NTKLEVLLLTNNSFTGNLQLPDDKHDF----LHHLDISSNNFTGKLPQDMGIILQK 427
            Q    +   L L NN FT    +    + F    L  + ++ N +   + +D    +  
Sbjct: 151 FQGLCNETLTLKLYNNGFT---SVQG--YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 428 LL-YMDMSNNHFEGNIASSIAEMKELRFLDL 457
               +D+S        +  +  +KEL   + 
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 13/203 (6%)

Query: 498 LTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIP-HWMGNLSYLEVLLMS 555
               Q L L        I      +   +  + +S ++    +  H   NLS +  + + 
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 556 KNFFEGNIPVQLLNH-RRLQLFSVSENYLSGF--MTTSFNISSVEHLYLQKNSLSGPIPI 612
                  I    L     L+   +    L  F  +T  ++      L +  N     IP+
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 613 ALFR--SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ--LTGL 668
             F+   +  LTL L +NGF+  +       + L  + L  N     I         +G 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 669 GMMDLSHNKFNGSIPS-CFTNIT 690
            ++D+S      ++PS    ++ 
Sbjct: 208 SLLDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 35/256 (13%), Positives = 72/256 (28%), Gaps = 57/256 (22%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRG 651
            S + L L +  L   IP   F +  N+  + +  +     +        S +  + +R 
Sbjct: 31  PSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 652 NNLEGQIPNQICQ-LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVER 710
                 I     + L  L  + + +       P              D  ++        
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP--------------DLTKVYSTDIFFI 134

Query: 711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLS 770
           L+          + D   ++S       F  L                 N    + L L 
Sbjct: 135 LE----------ITDNPYMTSIPVN--AFQGL----------------CNE--TLTLKLY 164

Query: 771 CNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPE-SFSNLK-MIESLDLSHNRLSGQIPP 828
            N  T  +        ++  + ++ N     I + +F  +      LD+S   ++  +P 
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

Query: 829 ----KLTELNFLSNFN 840
                L EL   + + 
Sbjct: 223 KGLEHLKELIARNTWT 238

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
                L L  N            KL  L  ++ S+N I   +E         +  + L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF----EGTF- 295
           N +E+        +  LK L +  N+++         L+S+  L+L+DN       G F 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 296 PLSSL 300
            L SL
Sbjct: 151 TLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 207 NLEALDLSSNFINGSLESQGI-CELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
               L L++N     LE+ GI  +L  L  +N   N I D         + +  + ++ N
Sbjct: 33  YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ 319
           +L      +   L SL+ L L  N         S    S + +L L   +N + 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY--DNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 29/160 (18%)

Query: 132 QSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILREN 191
             L L+NN F  +     +  L  L+++                  N +T +      E 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKI--------------NFSNNKITDI------EE 74

Query: 192 NIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCL 251
                           +  + L+SN +  +++ +    L++L  L L  N I     +  
Sbjct: 75  GA--------FEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 252 NNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
             ++ +++L +  NQ++   P     L SL  L L  N F
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 123 SLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNA 179
            +F    +L+ ++ SNN    + E  A++       +  + L  N        +F     
Sbjct: 51  GIFKKLPQLRKINFSNNKITDI-EEGAFE---GASGVNEILLTSNRLENVQHKMF---KG 103

Query: 180 LTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFI----NGSLESQGICELKNLFV 235
           L SL TL+LR N I           L ++  L L  N I     G+ ++     L +L  
Sbjct: 104 LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT-----LHSLST 157

Query: 236 LNLEKN 241
           LNL  N
Sbjct: 158 LNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN 652
                L L  N  +      +F+    L  ++  +N  + +        S +  +LL  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 653 NLEGQIPNQICQ-LTGLGMMDLSHNK 677
            LE  + +++ + L  L  + L  N+
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNR 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFL 175
            +    F     +  + L++N  E V +++ +     L+ LK L L  N      +  F 
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLENV-QHKMFK---GLESLKTLMLRSNRITCVGNDSF- 125

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
               L+S+  L L +N I  +        L +L  L+L +N
Sbjct: 126 --IGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF 234
           L     + +  L+L  +     + +    + + LE L   +  +  S+    + +L  L 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA--NLPKLNKLK 67

Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDN 289
            L L  N +   L         L  L++S N++   S    +  L +L+ L LF+ 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 204 KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDIS 263
              +++ L L ++  N         E + L  L+     +   + N L  + +LK L++S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELS 72

Query: 264 FNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
            N++SG    +     +L +L L  N  +    +  L     L+ L L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
           L   FEEL+ L   N     +        L  L +LK L L  N     + +      +L
Sbjct: 37  LTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
           T L L  N I+   T + L KL+NL++LDL + 
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 767 LDLSCNKLT-GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
           L L  ++   G++     E +E+  L+  +  L+ SI  +   L  ++ L+LS NR+SG 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 826 IPPKLTELNFLSNFNVSYNNLSGL 849
           +     +   L++ N+S N +  L
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDL 103

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIFL 175
           SL    FH   +L+ L L++N  + +           LK L+ L +  N        +F 
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKLQALPIGVF- 105

Query: 176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV 235
             + L +L  L L  N ++ S   +    L  L  L L  N +  SL      +L +L  
Sbjct: 106 --DQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161

Query: 236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
           L L  N ++       + +T LK L +  NQL         +L  L+ L L +N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 25/185 (13%)

Query: 232 NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
           +   L+L+ N +        + +T+L++L ++ N+L      I   L +LE L + DN  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 292 EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLP--TF----QLKVLRLPNCSLNVIP 345
           +   P+        L  L L    N L+      LP   F    +L  L L    L  +P
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLD--RNQLK-----SLPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 346 PFLLHQFD----LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHD 401
             +   FD    LK L L +N L    P  A    T+L+ L L NN      ++P+   D
Sbjct: 150 KGV---FDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK---RVPEGAFD 202

Query: 402 FLHHL 406
            L  L
Sbjct: 203 SLEKL 207

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 19/190 (10%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
              K LD+  N+LS         LT L  L L DN  + T P         LE L ++  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT-- 93

Query: 315 NNMLQ-VQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD----LKYLDLSHNDLDGAFP 369
           +N LQ +    F     L  LRL    L  +PP +   FD    L YL L +N+L  + P
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV---FDSLTKLTYLSLGYNELQ-SLP 149

Query: 370 TWALQNNTKLEVLLLTNNSFTGNLQLPD---DKHDFLHHLDISSNNFTGKLPQDMGIILQ 426
                  T L+ L L NN      ++P+   DK   L  L + +N    ++P+     L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK---RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 427 KLLYMDMSNN 436
           KL  + +  N
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 55/230 (23%), Positives = 84/230 (36%), Gaps = 54/230 (23%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           +  + L LQ N LS     A  R + L  L L DN    +      E  NL  L +  N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 654 LEGQIPNQI-CQLTGLGMMDLSHNKFNGSIPS-CFTNITLWSVGNLDRYRLEHLTFVERL 711
           L+  +P  +  QL  L  + L  N+   S+P   F ++T          +L +L     L
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT----------KLTYL----SL 140

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
             N             +L S  +G   FD L                 +L     L L  
Sbjct: 141 GYN-------------ELQSLPKG--VFDKLT----------------SLKE---LRLYN 166

Query: 772 NKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHN 820
           N+L   +P     +L E+  L + +N L      +F +L+ ++ L L  N
Sbjct: 167 NQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 35/204 (17%)

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
           LD+ SN  +  LP      L KL  + +++N  +   A    E+K L  L ++ N     
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 466 LSAALLTSCFSLLWLGLSDNNFY---GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
           L   +     +L  L L  N       R+F     LT+L YL L  N+    + +G+   
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---LTKLTYLSLGYNELQ-SLPKGVFDK 155

Query: 523 -KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE 580
              L ELR+ +N L   +P      L+ L+ L +  N                QL  V E
Sbjct: 156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN----------------QLKRVPE 198

Query: 581 NYLSGFMTTSFNISSVEHLYLQKN 604
                      ++  ++ L LQ+N
Sbjct: 199 GAFD-------SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 13/185 (7%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSK 556
              + L L++NK S  +         KL  L ++ N L   +P  +   L  LE L ++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 557 NFFE---GNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI 612
           N  +     +  QL+N   L+L     N L       F +++ + +L L  N L   +P 
Sbjct: 95  NKLQALPIGVFDQLVNLAELRL---DRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPK 150

Query: 613 ALFRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM 671
            +F   ++L  L L +N    V     ++ + L+ L L  N L+         L  L M+
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 672 DLSHN 676
            L  N
Sbjct: 211 QLQEN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 13/139 (9%)

Query: 126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTT 185
             + +++ L L++     +        L  L  +  L+L +N    ++   L AL  L  
Sbjct: 438 MEYADVRVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 186 LILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNI-- 243
           L   +N +       G++ L  L+ L L +N +  S   Q +     L +LNL+ N++  
Sbjct: 491 LQASDNAL---ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

Query: 244 -EDHLPNCLNNMTRLKVLD 261
            E         +  +  + 
Sbjct: 548 EEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 7e-08
 Identities = 42/242 (17%), Positives = 73/242 (30%), Gaps = 30/242 (12%)

Query: 618 SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK 677
            +L    L D               + +  +L  +  E    +       L   +LS  K
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA-TDEQLFRCELSVEK 360

Query: 678 FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPF 737
                 S      L S   L     E+   +  +           M  +  L  E+    
Sbjct: 361 ------STVLQSELESCKELQELEPENKWCLLTI--------ILLMRALDPLLYEKETLQ 406

Query: 738 TFDYLVEVEFVTKNRYEVYNGSNLDYMVG----------LDLSCNKLTGEIPSEIGELQE 787
            F  L  V+ +     +      L               L L+   LT  +   + +L  
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLL 464

Query: 788 IPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLS 847
           +  L++SHN L  ++P + + L+ +E L  S N L   +   +  L  L    +  N L 
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

Query: 848 GL 849
             
Sbjct: 522 QS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 45/326 (13%), Positives = 94/326 (28%), Gaps = 18/326 (5%)

Query: 234 FVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEG 293
           ++L   + +      +       L V       +     +++  +        +      
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 294 TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD 353
             P            L      +  +V         +  +L+                  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW---CRDSATDEQ 350

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
           L   +LS            L++  +L+ L   N      + L     D L +   +   F
Sbjct: 351 LFRCELSVEKSTVL--QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
           +        +   +  Y+D   + F    +    E  ++R L L+  + +       L  
Sbjct: 409 S----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQ 461

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN 533
              +  L LS N     + P    L  L+ L   +N     + +G+    +L EL + +N
Sbjct: 462 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NV-DGVANLPRLQELLLCNN 518

Query: 534 MLSGH--IPHWMGNLSYLEVLLMSKN 557
            L     I   + +   L +L +  N
Sbjct: 519 RLQQSAAIQP-LVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 57/311 (18%), Positives = 102/311 (32%), Gaps = 39/311 (12%)

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
           + + +L  ++         RT  G ++  ++   DL +  +N  L       +       
Sbjct: 269 SRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQ 328

Query: 238 LEKNNIEDH---LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
            E   ++D             +L   ++S  + +    S + +   L+ L   +      
Sbjct: 329 KECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK----W 383

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDL 354
             L+ +     L+ LL            +   P     +  L +  L       +   D+
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT 414
           + L L+H DL            T L  L          L         + HLD+S N   
Sbjct: 444 RVLHLAHKDL------------TVLCHL--------EQLL-------LVTHLDLSHNRLR 476

Query: 415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474
             LP  +   L+ L  +  S+N  E N+   +A +  L+ L L  N      +   L SC
Sbjct: 477 -ALPPALAA-LRCLEVLQASDNALE-NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 475 FSLLWLGLSDN 485
             L+ L L  N
Sbjct: 533 PRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 31/266 (11%)

Query: 158 RLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNF 217
            L   +L       +  +      S    +L ++  +     +  +  + L   +LS   
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC--WCRDSATDEQLFRCELSVEK 360

Query: 218 INGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN 277
                      EL++   L   +   +  L   +  M  L  L      L        S 
Sbjct: 361 STVLQS-----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-----FST 410

Query: 278 LTSLEYLALFDNNFEGTFPL--SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLR 335
           L +++ +     +   +  L  +S+      +V +L   +  L     +      +  L 
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLD 469

Query: 336 LPNCSLNVIPPFLLHQFDLKYLDLSHN---DLDGAFPTWALQNNTKLEVLLLTNNSFTGN 392
           L +  L  +PP L     L+ L  S N   ++DG      + N  +L+ LLL NN     
Sbjct: 470 LSHNRLRALPPALAALRCLEVLQASDNALENVDG------VANLPRLQELLLCNNRLQ-- 521

Query: 393 LQLPDDKHDF----LHHLDISSNNFT 414
            Q    +       L  L++  N+  
Sbjct: 522 -QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 50/264 (18%), Positives = 88/264 (33%), Gaps = 15/264 (5%)

Query: 346 PFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHH 405
           P  +   DL    L+       F      ++++ E +LL +           D+   L  
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ--LFR 353

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
            ++S    T    +      ++L  ++  N      + + I  M+ L  L   K      
Sbjct: 354 CELSVEKSTVLQSEL--ESCKELQELEPENKWC---LLTIILLMRALDPLLYEKETLQYF 408

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525
            +   +    +     L             M    ++ L+L +   +  +   L +   +
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVL-KMEYADVRVLHLAHKDLT-VLC-HLEQLLLV 465

Query: 526 VELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG 585
             L +S N L   +P  +  L  LEVL  S N  E N+   + N  RLQ   +  N L  
Sbjct: 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQ 522

Query: 586 FMTTS--FNISSVEHLYLQKNSLS 607
                   +   +  L LQ NSL 
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLC 546

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL 238
              ++  L+L        + +   ++  NLE L L +  +  S+    + +L  L  L L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS--NLPKLPKLKKLEL 78

Query: 239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI--ISNLTSLEYLALFDN 289
            +N I   L      +  L  L++S N+L     ++  +  L  L+ L LF+ 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISF 264
              +  L L +   N         E  NL  L+L    +   + N L  + +LK L++S 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELSE 80

Query: 265 NQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLS 312
           N++ G    +   L +L +L L  N  +    L  L     L+ L L 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
           L   F  L+ L L N     V        L  L +LK L L  N     + +    L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
           T L L  N ++   T + L KL+ L++LDL + 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 18/141 (12%)

Query: 330 QLKVLRLPNCSLN--VIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNN 387
            ++ L L NC  N   I        +L++L L +  L        L    KL+ L L+ N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSEN 81

Query: 388 SFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-----LQKLLYMDMSNN---HFE 439
              G L +  +K   L HL++S N       +D+  +     L+ L  +D+ N    +  
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 440 GNIASSIAEMKELRFLDLSKN 460
               S    + +L +LD    
Sbjct: 137 DYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
           LD   +   G+I     E   +  L++ +  L  S+  +   L  ++ L+LS NR+ G +
Sbjct: 31  LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 827 PPKLTELNFLSNFNVSYNNLSGL 849
                +L  L++ N+S N L  +
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDI 110

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 84/531 (15%), Positives = 156/531 (29%), Gaps = 64/531 (12%)

Query: 123 SLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTS 182
            L   F  L+SL L       ++     +  G             Y    +    N L  
Sbjct: 67  RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG-------------YVTPWVTEISNNLRQ 113

Query: 183 LTTLILRENNIQGSRTKQGLSKL-----KNLEALDLS--SNFINGSLESQGICELKNLFV 235
           L ++  R   +    +   L +L      +LE L L   S F    L S      + +  
Sbjct: 114 LKSVHFRRMIV----SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH-CRKIKT 168

Query: 236 LNLEKNNIEDH----LPNCLNNMTRLKVLDISFNQLSG----SFPSIISNLTSLEYLALF 287
           L +E+++  +     L     + T L+VL+    + +        +I  N  SL  + + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 288 DNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF 347
           D            A + +         +  +  +  N +   +L  L L     N +P  
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288

Query: 348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNN-SFTGNLQLPDDKHDFLHHL 406
                 ++ LDL +  L+       +Q    LEVL   N     G   L       L  L
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ-LKRL 347

Query: 407 DISSNNFTGKLPQDMGII-----------LQKLLYMDMSNNHF--EG--NIASSIAEMKE 451
            I        +  + G++            Q+L YM +  +    E   +I + +  + +
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 452 LRFLDLSK-----NNFSGELSAALLTSCFSLLWLGLSDN-NFYGRIFPGY--MNLTQLQY 503
            R + L +     +        +LL  C  L              +   Y       +++
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467

Query: 504 LYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGH-IPHWMGNLSYLEVLLMSKNFF-E 560
           + L     S +      +    L +L M     S   I   +  L  L  L +       
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527

Query: 561 GNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNI--SSVEHLYLQKNSLSGP 609
               +  +      +  +    +                H+     SL+G 
Sbjct: 528 TGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAY-YSLAGQ 577

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
            ++T + L +N I+        S  K L  +DLS+N I+  L       L++L  L L  
Sbjct: 32  ETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N I +   +    +  L++L ++ N+++        +L +L  L+L+DN  + T    + 
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148

Query: 301 ANHSKLEVLLL 311
           +    ++ + L
Sbjct: 149 SPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 2/133 (1%)

Query: 160 KILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFIN 219
             + L  N          +    L  + L  N I           L++L +L L  N I 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 220 GSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLT 279
             L       L +L +L L  N I     +   ++  L +L +  N+L        S L 
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 280 SLEYLALFDNNFE 292
           +++ + L  N F 
Sbjct: 153 AIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYN---YFDDSIFLYLNALT 181
           F P+++L+ +DLSNN    +    A D    L+ L  L L  N       S+F     L 
Sbjct: 52  FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITELPKSLF---EGLF 104

Query: 182 SLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKN 241
           SL  L+L  N I           L NL  L L  N +  ++       L+ +  ++L +N
Sbjct: 105 SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
           + +  N     +P       +KL  +D+SNN        +   ++ L  L L  N  + E
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPG-YMNLTQLQYLYLENNKFSGKIEEGLLKSKK 524
           L  +L    FSL  L L+ N     +    + +L  L  L L +NK     +      + 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 525 LVELRMSSN 533
           +  + ++ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 119 SLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY--------FD 170
            L    F     L SL L  N    +           L  L++L L  N         F 
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITEL----PKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125

Query: 171 DSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
           D        L +L  L L +N +Q +  K   S L+ ++ + L+ N
Sbjct: 126 D--------LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 332 KVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
             +RL   ++ VIPP     +  L+ +DLS+N +       A Q    L  L+L  N  T
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 391 GNLQLPD---DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA 447
              +LP    +    L  L +++N     L  D    L  L  + + +N  +     + +
Sbjct: 94  ---ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 448 EMKELRFLDLSKNNF 462
            ++ ++ + L++N F
Sbjct: 150 PLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 31/153 (20%)

Query: 480 LGLSDNNFYGRIFPGY-MNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSG 537
           + L  N     I PG      +L+ + L NN+ S ++     +  + L  L +  N ++ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 538 HIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISS 595
            +P  +   L  L++LL++ N                ++  +  +        +F ++ +
Sbjct: 94  ELPKSLFEGLFSLQLLLLNAN----------------KINCLRVD--------AFQDLHN 129

Query: 596 VEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN 628
           +  L L  N L             + T+ L  N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           L    I         +       LDL    I   +E+ G   L     ++   N I    
Sbjct: 4   LTAELI---EQAAQYTNAVRDRELDLRGYKIP-VIENLGAT-LDQFDAIDFSDNEIRKL- 57

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
            +    + RLK L ++ N++      +   L  L  L L +N+      L  LA+   L 
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 308 VLLLS 312
            L + 
Sbjct: 117 YLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSL 183
           L    ++  ++D S+N    +      D    L+RLK L +  N           AL  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 184 TTLILRENNIQGSRTKQGLSKLKNLEALDLSSN 216
           T LIL  N++        L+ LK+L  L +  N
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 757 NGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLD 816
             +N      LDL   K+   I +    L +   ++ S N +   + + F  L+ +++L 
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLL 70

Query: 817 LSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL 849
           +++NR+          L  L+   ++ N+L  L
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 321 QTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHND---LDGAFPTWALQNNT 377
           Q   +    + + L L    + VI            +D S N+   LDG           
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG------FPLLR 64

Query: 378 KLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-----LQKLLYMD 432
           +L+ LL+ NN      +  D     L  L +++N+       ++G +     L+ L Y+ 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPLASLKSLTYLC 119

Query: 433 MSNN---HFEGNIASSIAEMKELRFLDLSK 459
           +  N   + +      I ++ ++R LD  K
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 4e-09
 Identities = 55/377 (14%), Positives = 116/377 (30%), Gaps = 42/377 (11%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIFLYLNALTSLTTLI 187
           L+ LDL  +  + V  +       +   L  LN+          ++   +    +L +L 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICE-----LKNLFVLNLEKNN 242
           L    +   +    L +   LE L           +            K L  L+   + 
Sbjct: 218 LN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 243 IEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTFPLSSLA 301
           +  +LP   +  +RL  L++S+  +       ++     L+ L + D   +    L  LA
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG--LEVLA 334

Query: 302 NH-SKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
           +    L  L +               P+    +      +   +    +    L+ +   
Sbjct: 335 STCKDLRELRVF--------------PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380

Query: 361 HNDL-DGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDF-----------LHHLDI 408
              + + A  T A +N   +    L          L  +  D            L  L +
Sbjct: 381 CRQMTNAALITIA-RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

Query: 409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE-MKELRFLDLSKNNFSGELS 467
           S    T K+ + +G   +K+  + ++           +      LR L++    F  +  
Sbjct: 440 S-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498

Query: 468 AALLTSCFSLLWLGLSD 484
            A  +   ++  L +S 
Sbjct: 499 LANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 38/282 (13%), Positives = 82/282 (29%), Gaps = 30/282 (10%)

Query: 123 SLFHPFEELQSLDLS--NNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           +L     +L+ L              +     L   K L+ L+  ++     +    +  
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
           + LTTL L    +Q     + L +   L+ L +     +  LE       K+L  L +  
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST-CKDLRELRVFP 347

Query: 241 NNIEDHLPNC----------LNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDN 289
           +      PN                +L+ +     Q++  +  +I  N  ++    L   
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 290 NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNC-SLNVIPPFL 348
             +    L+          ++   ++               L+ L L    +  V     
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKD---------------LRRLSLSGLLTDKVFEYIG 452

Query: 349 LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
            +   ++ L ++            L     L  L + +  F 
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 63/461 (13%), Positives = 135/461 (29%), Gaps = 74/461 (16%)

Query: 120 LNVSLFHPFEELQSLDLS-----------NNSFEGVYENQAYDTLGSLKRLKILNLGYNY 168
              ++   F +++S++L             + + G           S   L+ + L    
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116

Query: 169 FDDSIFLYL-NALTSLTTLILRE-NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG 226
             D     +  +  +   L+L               +  +NL+ LDL  + ++  +    
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHW 175

Query: 227 ICEL----KNLFVLNLE--KNNIED-HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLT 279
           +        +L  LN+    + +    L   +     LK L ++         +++    
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 280 SLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTF-----QLKVL 334
            LE L       E    + S  + +      L   +         +LP       +L  L
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTL 294

Query: 335 RLPNCSLN--------------------------VIPPFLLHQFDLKYLDLSHNDLDGAF 368
            L   ++                            +        DL+ L +  ++     
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354

Query: 369 PTWAL---------QNNTKLEVLLLTNNSFTGN------LQLPDDKHDFLHHLDISSNNF 413
           P  AL             KLE +L      T           P+     L  ++  + ++
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414

Query: 414 TGKLPQDMGII-----LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSA 468
               P D+G        + L  + +S    +          K++  L ++    S     
Sbjct: 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474

Query: 469 ALLTSCFSLLWLGLSDNNFYGR-IFPGYMNLTQLQYLYLEN 508
            +L+ C SL  L + D  F  + +      L  ++ L++ +
Sbjct: 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 68/536 (12%), Positives = 151/536 (28%), Gaps = 83/536 (15%)

Query: 179 ALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS--SNFINGSLESQGICELKNLFVL 236
            +       +   N         + +   + +++L    +F + +L   G       ++ 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLS-GSFPSIISNLTSLEYLALFDNNFEGTF 295
            +          +       L+ + +    ++      I  +  + + L L       T 
Sbjct: 99  AM--------SSSYTW----LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146

Query: 296 PLSSLANH-SKLEVLLLSTRNNMLQVQTENFLPTF-----QLKVLRLPNCSLNV----IP 345
            L+++A     L+ L L    + +   + ++L  F      L  L +   +  V    + 
Sbjct: 147 GLAAIAATCRNLKELDLR--ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204

Query: 346 PFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHH 405
             +    +LK L L+         T  LQ   +LE L     +            D    
Sbjct: 205 RLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRP-------DVYSG 256

Query: 406 LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE 465
           L ++ +              ++L  +    +     + +  +    L  L+LS       
Sbjct: 257 LSVALSG------------CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 466 LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL 525
               LL  C  L  L + D      +         L+ L +  ++         L  + L
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 526 VELRMSSNMLS--------------GHIPHWMGNLSYLEVLLMSKNFFEGN--------I 563
           V + M    L                 I     N++   + ++     +           
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424

Query: 564 PVQLLNHRRLQLFSVSENY-LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRS-SNLL 621
              + + + L+  S+S       F         +E L +     S      +     +L 
Sbjct: 425 GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484

Query: 622 TLDLRDNGFSG-VIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
            L++RD  F    +    ++   +R L +             C ++      L   
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSS-----------CSVSFGACKLLGQK 529

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 200 QGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKV 259
             L   +NL  L + +      LE + +  L  L  L + K+ +    P+  +   RL  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 260 LDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
           L++SFN L       +  L SL+ L L  N  
Sbjct: 85  LNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 6e-06
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 768 DLSC-NKLTGEIPSEIGELQEIPVLNMSHNFLSESIP-ESFSNLKMIESLDLSHNRLSGQ 825
            L C      +    +   + +  L + +    + +       L  + +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 826 IPPK-LTELNFLSNFNVSYNNLSGLIPD 852
           + P        LS  N+S+N L  L   
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWK 98

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 767 LDLSCNKLTGEIPSE-IGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
           L +   +    +    +  L E+  L +  + L    P++F     +  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 826 IPPKLTELNFLSNFNVSYNNL 846
           +  K  +   L    +S N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 294 TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD 353
              L  L     L  L +  + ++  ++  +     +L+ L +    L  + P   H   
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 354 -LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT 390
            L  L+LS N L     +W       L+ L+L+ N   
Sbjct: 81  RLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSY 548
                      L  LY+EN +    +E   L+   +L  L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 549 LEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL 583
           L  L +S N  E ++  + +    LQ   +S N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 12/163 (7%)

Query: 132 QSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYF---DDSIFLYLNALTSLTTLIL 188
           + LDL +     +  +  +     L +L  LNL YN        +F   + LT L TL L
Sbjct: 38  EKLDLQSTGLATL-SDATFR---GLTKLTWLNLDYNQLQTLSAGVF---DDLTELGTLGL 90

Query: 189 RENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLP 248
             N +  S        L  L+ L L  N +  SL S     L  L  L L  N ++    
Sbjct: 91  ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 249 NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF 291
              + +T L+ L +S NQL          L  L+ + LF N F
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 50/188 (26%), Positives = 71/188 (37%), Gaps = 45/188 (23%)

Query: 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLS 268
           E LDL S  +  +L       L  L  LNL+ N ++       +++T L  L ++ NQL+
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 269 GSFPS-IISNLTSLEYLALFDNNF----EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTE 323
            S P  +  +LT L+ L L  N       G F    L     L+ L L+   N LQ    
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTK---LKELRLN--TNQLQ---- 144

Query: 324 NFLPTFQLKVLRLPNCSLNVIPPFLLHQFD----LKYLDLSHNDLDGAFPTWALQNNTKL 379
                       +P              FD    L+ L LS N L  + P  A     KL
Sbjct: 145 -----------SIPA---GA--------FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181

Query: 380 EVLLLTNN 387
           + + L  N
Sbjct: 182 QTITLFGN 189

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
              T L+L +N +    +     +L +L  L+L  N +   +E        ++  L L +
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE 87

Query: 241 NNIEDHLPN-CLNNMTRLKVLDISFNQLS----GSFPSIISNLTSLEYLALFDN 289
           N I+  + N     + +LK L++  NQ+S    GSF     +L SL  L L  N
Sbjct: 88  NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 209 EALDLSSNFINGSLESQGICE-LKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL 267
             L L+ N +   + S G+   L +L  L L++N +    PN     + ++ L +  N++
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 268 SGSFPS-IISNLTSLEYLALFDNNF----EGTF-PLSSL 300
                + +   L  L+ L L+DN       G+F  L+SL
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.6 bits (125), Expect = 3e-07
 Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 21/218 (9%)

Query: 321 QTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLE 380
             E    +     +                  D +  ++S  +     P   L     L 
Sbjct: 118 GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLN 175

Query: 381 VLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI----ILQKL-LYMDMSN 435
            L +     T NL +       L  L+I S      + +D+       L+KL LY+ + +
Sbjct: 176 NLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 436 NHFEGNIAS-----SIAEMKELRFLDLSKNNFSGELSAALLTSCF--SLLWLGLSDNNFY 488
             F+G++       S      L++L +        +    L S     L  + +S     
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

Query: 489 GR----IFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
                 +      +  L+++ ++ N  S ++++ L KS
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNA--LTSLTTLIL--RENNIQGSRTKQGLS------K 204
               LK L +      DS+   +    L +L  L+L     +                 +
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 205 LKNLEALDLSSNFINGSLESQ--GICELKNLFVLNLEKNNIED----HLPNCLNNMTRLK 258
             NL+ L +        +         L  L  +++    + D     L + ++ +  LK
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 259 VLDISFNQLS 268
            +++ +N LS
Sbjct: 311 FINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTW----ALQNNTKLEVLLLT 385
            L  L++   +   I         LK L++    L  +         L N  KL + +  
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPN--LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 386 NNSFTGN------LQLPDDKHDFLHHLDISSNNFTGKLPQDMGI--ILQKLLYMDMSNNH 437
            +                D+   L  L I        + +      IL +L  MD+S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 438 FEGN----IASSIAEMKELRFLDLSKNNFSGELSAALLTSC 474
                   +   + ++K L+F+++  N  S E+   L  S 
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 25/183 (13%), Positives = 65/183 (35%), Gaps = 17/183 (9%)

Query: 394 QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR 453
           +    +  F   +D      +     D+  +L  +  ++        N++        L+
Sbjct: 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK 196

Query: 454 FLDLSKNNFSGELSAALLTSCFSLL-----WLGLSDNNFYGRI-----FPGYMNLTQLQY 503
            L++        +   +L S    L     ++G+ D  F G +              L++
Sbjct: 197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256

Query: 504 LYLENNKFSGKIEEGLLKS---KKLVELRMSSNMLSG----HIPHWMGNLSYLEVLLMSK 556
           L + + +    + E  L+S    +L  + +S+ +L+      +   +  + +L+ + M  
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316

Query: 557 NFF 559
           N+ 
Sbjct: 317 NYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 127 PFEELQSLDLSNNSF-EGVYENQAYDTLGSLKRLKILNLGYNYFDDSI------FLYLNA 179
           P   L+SL++ +    + V E+     L +L++L +     +Y  D            + 
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 180 LTSLTTLILRENNIQGSRTKQ--GLSKLKNLEALDLSSNFIN---GSLESQGICELKNLF 234
             +L  L + +   Q    +       L  LE +D+S+  +      L    + ++K+L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 235 VLNLEKNNIED 245
            +N++ N + D
Sbjct: 311 FINMKYNYLSD 321

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
             +T L L  N          LS  K+L  +DLS+N I+ +L +Q    +  L  L L  
Sbjct: 31  RDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALFDN 289
           N +    P   + +  L++L +  N +S   P    ++L++L +LA+  N
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLS 268
             L L  N    +L  + +   K+L +++L  N I        +NMT+L  L +S+N+L 
Sbjct: 34  TELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 269 GSFPS-IISNLTSLEYLALFDNNF----EGTF-PLSSL 300
              P      L SL  L+L  N+     EG F  LS+L
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 11/94 (11%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI 826
           L L  N+ T  +P E+   + + ++++S+N +S    +SFSN+  + +L LS+NRL   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 827 PP----KLTELNFLSNFNVSYNNLSGLIPDKGQF 856
           PP     L  L  LS   +  N++S  +P+ G F
Sbjct: 94  PPRTFDGLKSLRLLS---LHGNDISV-VPE-GAF 122

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 235 VLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT 294
            L L+ N     +P  L+N   L ++D+S N++S       SN+T L  L L  N     
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR---- 89

Query: 295 FPLSSLANH--SKLEVL-LLSTRNNMLQ 319
             L  +       L+ L LLS   N + 
Sbjct: 90  --LRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 49/254 (19%), Positives = 88/254 (34%), Gaps = 30/254 (11%)

Query: 74  MSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQS 133
           ++SD   W+ +                +   I +    ++ D  L+ + S F     +Q 
Sbjct: 42  LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR----VQH 97

Query: 134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNI 193
           +DLSN+    +  +  +  L    +L+ L+L      D I   L   ++L  L     N+
Sbjct: 98  MDLSNSV---IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL-----NL 149

Query: 194 QGSR--TKQGL----SKLKNLEALDLSSNFINGSLESQGICEL-----KNLFVLNLEK-- 240
            G    ++  L    S    L+ L+LS  F       + +        + +  LNL    
Sbjct: 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCF---DFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 241 NNIED-HLPNCLNNMTRLKVLDISF-NQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLS 298
            N++   L   +     L  LD+S    L          L  L++L+L          L 
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 299 SLANHSKLEVLLLS 312
            L     L+ L + 
Sbjct: 267 ELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 33/218 (15%)

Query: 177 LNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL 236
              L S   +  R       +          ++ +DLS++ I  S     + +   L  L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISF-NQLS-GSFPSIISNLTSLEYLALFDNNFEGT 294
           +LE   + D + N L   + L  L++S  +  S  +  +++S+ + L+ L     N    
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL-----NLSWC 178

Query: 295 FPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNV----IPPFLLH 350
           F  +                   +QV   +      +  L L     N+    +   +  
Sbjct: 179 FDFTEKH----------------VQVAVAHVSE--TITQLNLSGYRKNLQKSDLSTLVRR 220

Query: 351 QFDLKYLDLSHNDL--DGAFPTWALQNNTKLEVLLLTN 386
             +L +LDLS + +  +  F          L+ L L+ 
Sbjct: 221 CPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQHLSLSR 256

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 59/225 (26%), Positives = 81/225 (36%), Gaps = 62/225 (27%)

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGIC-ELKNLFVL 236
           N L S+  +I   ++I+   + QG+  L N+  L L  N     L       EL NL  L
Sbjct: 38  NELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGN----KLHDISALKELTNLTYL 90

Query: 237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP 296
            L  N ++       + +T LK L +  NQL      +   LT+L YL L  N       
Sbjct: 91  ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN------- 143

Query: 297 LSSLANHSKLEVLLLSTRNNMLQVQTENFLPT--F----QLKVLRLPNCSLNVIPPFLLH 350
                                 Q+Q+   LP   F     L  L L    L  +P  +  
Sbjct: 144 ----------------------QLQS---LPKGVFDKLTNLTELDLSYNQLQSLPEGV-- 176

Query: 351 QFD----LKYLDLSHNDL----DGAFPTWALQNNTKLEVLLLTNN 387
            FD    LK L L  N L    DG F        T L+ + L +N
Sbjct: 177 -FDKLTQLKDLRLYQNQLKSVPDGVF-----DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 40/170 (23%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
                 L  L L+ N  + +  N  +D L +LK L               L  N L SL 
Sbjct: 81  LKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV--------------LVENQLQSLP 125

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
             +                KL NL  L+L+ N +  SL      +L NL  L+L  N ++
Sbjct: 126 DGV--------------FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 245 DHLPN-CLNNMTRLKVLDISFNQL----SGSFPSIISNLTSLEYLALFDN 289
             LP    + +T+LK L +  NQL     G F      LTSL+Y+ L DN
Sbjct: 171 S-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVF----DRLTSLQYIWLHDN 215

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 25/134 (18%)

Query: 157 KRLKILNLG-YNYFDD----SIFLYLNALTSLTTLILRENNIQGSRTK---QGLSKLKNL 208
             L+ +NL            +    L   T +    +              + L     L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 209 EALDLSSNFINGSLESQGICEL-------KNLFVLNLEKNN------IEDHLPNCLNNMT 255
           ++L++ SNFI+G     GI  L        +L  L ++  +      +E  + N L   T
Sbjct: 96  KSLNVESNFISG----SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151

Query: 256 RLKVLDISFNQLSG 269
            L      F Q   
Sbjct: 152 TLLKFGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 25/138 (18%)

Query: 353 DLKYLDLS-HNDL--DGAFP-TWALQNNTKLEVLLLTNNSFTGN--------LQLPDDKH 400
           DL+ ++L+   ++          AL+ NT ++   +                L+     +
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK----VN 92

Query: 401 DFLHHLDISSNNFTGKLPQDMGIILQ-----KLLYMDMSNNHFEGNIASSIAEM----KE 451
           + L  L++ SN  +G     +   LQ       L +D  +     N+   IA M      
Sbjct: 93  NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152

Query: 452 LRFLDLSKNNFSGELSAA 469
           L             L A+
Sbjct: 153 LLKFGYHFTQQGPRLRAS 170

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 123 SLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGY-NYFDDSIFLYLNALT 181
           +      ++Q++D +++       +  +D +  L+ ++ + L   +Y +D     L+ L 
Sbjct: 55  TGPLDKYKIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 182 SLTTLILRENNIQGSR-TKQG---LSKLKNLEALDLS 214
           +L   +L    I     T +G   L   +NL+ L LS
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	911
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.49

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-95  Score=891.19  Aligned_cols=718  Identities=32%  Similarity=0.477  Sum_probs=562.7

Q ss_pred             cCCCCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeecCCCCcEEEEecCCCCccccccccc
Q 043567           32 HGYKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNY  111 (911)
Q Consensus        32 ~~~~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~  111 (911)
                      +++..+.++||+|||+||+++.      ||. .+++|+.+    ++||+|+||+|+  +|||+++||++..+  .     
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~------~~~-~l~~W~~~----~~~C~w~gv~C~--~~~v~~L~L~~~~l--~-----   63 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLP------DKN-LLPDWSSN----KNPCTFDGVTCR--DDKVTSIDLSSKPL--N-----   63 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCS------CTT-SSTTCCTT----SCGGGSTTEEEE--TTEEEEEECTTSCC--C-----
T ss_pred             CccccCCHHHHHHHHHHHhhCC------Ccc-cccCCCCC----CCCcCCcceEEC--CCcEEEEECCCCCc--C-----
Confidence            3444568899999999999994      566 89999854    799999999998  68999999998875  1     


Q ss_pred             ccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchh--hhcCCCCCCEEEcC
Q 043567          112 TYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFL--YLNALTSLTTLILR  189 (911)
Q Consensus       112 ~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls  189 (911)
                        |. +..+. ..+..+++|+.++++.+.+.. .+    ..++++++|++|||++|.+.+.+|.  .++++++|++|+|+
T Consensus        64 --g~-~~~l~-~~l~~L~~L~~l~~~~~~~~~-l~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls  134 (768)
T 3rgz_A           64 --VG-FSAVS-SSLLSLTGLESLFLSNSHING-SV----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS  134 (768)
T ss_dssp             --EE-HHHHH-HHTTTCTTCCEEECTTSCEEE-CC----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred             --Cc-cCccC-hhHhccCcccccCCcCCCcCC-Cc----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence              11 00121 356778888888888876643 22    5789999999999999999988888  89999999999999


Q ss_pred             CcccCCccChhhhcCCCCCCEEeCCCCCCCCccCccc--ccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcC
Q 043567          190 ENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQG--ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQL  267 (911)
Q Consensus       190 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~--~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  267 (911)
                      +|.+.+.++...+.++++|++||+++|.+++..+...  +.++++|++|++++|.+++..|  +..+++|++|++++|.+
T Consensus       135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l  212 (768)
T 3rgz_A          135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF  212 (768)
T ss_dssp             SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCC
T ss_pred             CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcC
Confidence            9999887775555889999999999999986555421  6888999999999999887655  37888999999999998


Q ss_pred             CccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChh
Q 043567          268 SGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPF  347 (911)
Q Consensus       268 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~  347 (911)
                      ++.+|. ++++++|++|++++|.+++.+| ..+.++++|+                                        
T Consensus       213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~----------------------------------------  250 (768)
T 3rgz_A          213 STGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELK----------------------------------------  250 (768)
T ss_dssp             CSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCC----------------------------------------
T ss_pred             CCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCC----------------------------------------
Confidence            887776 8888999999999988887666 3444444444                                        


Q ss_pred             hhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCC-CCCccEEEccCCcCCcCCChhHHHhcc
Q 043567          348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDK-HDFLHHLDISSNNFTGKLPQDMGIILQ  426 (911)
Q Consensus       348 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~ls~n~l~~~ip~~~~~~l~  426 (911)
                              +|++++|.+++.+|..   .+++|++|++++|.+++..+..... +++|++|++++|.+++.+|..+.. ++
T Consensus       251 --------~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~  318 (768)
T 3rgz_A          251 --------LLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CS  318 (768)
T ss_dssp             --------EEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CT
T ss_pred             --------EEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CC
Confidence                    4444444444444432   4455555555555555443333322 366777777777777777777754 78


Q ss_pred             CCcEEEcccCccccccchh-hhcCCCCcEEeccCcccCCcccHHHHhccc-ccceeeccCcccccccCCCCCC--CCCCC
Q 043567          427 KLLYMDMSNNHFEGNIASS-IAEMKELRFLDLSKNNFSGELSAALLTSCF-SLLWLGLSDNNFYGRIFPGYMN--LTQLQ  502 (911)
Q Consensus       427 ~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~  502 (911)
                      +|++|++++|.++|.+|.. +..+++|++|++++|+++|.+|..+. .++ +|+.|++++|.+++.+++.+..  +++|+
T Consensus       319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            8888888888888777765 77888888888888888877777654 444 8888888888888888877766  78899


Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcc
Q 043567          503 YLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY  582 (911)
Q Consensus       503 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~  582 (911)
                      +|++++|++++.+|..+..+++|++|++++|++++.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|+
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            99999999988888888889999999999999988888889999999999999999998899889899999999999999


Q ss_pred             cccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh
Q 043567          583 LSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ  661 (911)
Q Consensus       583 l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~  661 (911)
                      +++.+|..+ ++++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|..
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence            998888877 8889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCeEEcCCC---------c-------------CCCCCCcccccccccccCCccccccccchhhhhccccccccc
Q 043567          662 ICQLTGLGMMDLSHN---------K-------------FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIY  719 (911)
Q Consensus       662 l~~l~~L~~L~Ls~N---------~-------------l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~  719 (911)
                      +.....+..+++..+         .             +.|.+|..+..+..                ...+++....  
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------~~~~~l~~~~--  619 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST----------------RNPCNITSRV--  619 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG----------------TCCSCTTSCE--
T ss_pred             Hhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc----------------ccccccccce--
Confidence            888776655544431         1             11222222211110                0000000000  


Q ss_pred             cccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCC
Q 043567          720 YSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS  799 (911)
Q Consensus       720 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~  799 (911)
                                                 +  .+.. ......++.|+.||||+|+++|.||.+|+++++|+.|||++|+++
T Consensus       620 ---------------------------~--~g~~-~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  669 (768)
T 3rgz_A          620 ---------------------------Y--GGHT-SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS  669 (768)
T ss_dssp             ---------------------------E--EEEC-CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ---------------------------e--cccC-chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence                                       0  0000 001134678999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCccCccccCCCCCCCCCccCCCC
Q 043567          800 ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSC  879 (911)
Q Consensus       800 g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c  879 (911)
                      |.||+.++++++|++||||+|+++|.||..++++++|++||||+|+++|+||+++||.+|...+|.|||+|||+|+. +|
T Consensus       670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C  748 (768)
T 3rgz_A          670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC  748 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CC
T ss_pred             CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987 89


Q ss_pred             CCCCC
Q 043567          880 NGVEE  884 (911)
Q Consensus       880 ~~~~~  884 (911)
                      ....+
T Consensus       749 ~~~~~  753 (768)
T 3rgz_A          749 DPSNA  753 (768)
T ss_dssp             CSCC-
T ss_pred             CCCcc
Confidence            76544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-73  Score=696.12  Aligned_cols=656  Identities=30%  Similarity=0.392  Sum_probs=527.9

Q ss_pred             CCCEEeCCCCCCCcc---cCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccCh-hhhcCC
Q 043567          130 ELQSLDLSNNSFEGV---YENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTK-QGLSKL  205 (911)
Q Consensus       130 ~L~~L~Ls~n~l~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l  205 (911)
                      +++.|||+++.+.|.   ++    ..+.++++|+.++++.+.+. .+|..++++++|++|+|++|.+.|.+|. ..++++
T Consensus        51 ~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  125 (768)
T 3rgz_A           51 KVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC  125 (768)
T ss_dssp             EEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred             cEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC
Confidence            456788888888776   55    56777777887777777654 2456677777777777777777766652 156777


Q ss_pred             CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcc---cCCCCCCcEEEccCCcCCccCcccccCCCCCC
Q 043567          206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC---LNNMTRLKVLDISFNQLSGSFPSIISNLTSLE  282 (911)
Q Consensus       206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  282 (911)
                      ++|++|++++|.+++.+|...+.++++|++|++++|.+++..|..   +.++++|++|++++|.+++..|.  ..+++|+
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~  203 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLE  203 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCC
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCC
Confidence            777777777777766666544466677777777777666665555   56666666666666666654442  5566666


Q ss_pred             eeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCC
Q 043567          283 YLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHN  362 (911)
Q Consensus       283 ~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n  362 (911)
                      +|++++|.+++.+|                                                  .+..+++|++|++++|
T Consensus       204 ~L~Ls~n~l~~~~~--------------------------------------------------~l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          204 FLDVSSNNFSTGIP--------------------------------------------------FLGDCSALQHLDISGN  233 (768)
T ss_dssp             EEECCSSCCCSCCC--------------------------------------------------BCTTCCSCCEEECCSS
T ss_pred             EEECcCCcCCCCCc--------------------------------------------------ccccCCCCCEEECcCC
Confidence            66666666654443                                                  2445567788888889


Q ss_pred             CCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccccc
Q 043567          363 DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNI  442 (911)
Q Consensus       363 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~  442 (911)
                      .+++.+|..+ .++++|++|++++|.+.+..  +...+++|++|++++|.++|.+|..++..+++|++|++++|.+++.+
T Consensus       234 ~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~  310 (768)
T 3rgz_A          234 KLSGDFSRAI-STCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV  310 (768)
T ss_dssp             CCCSCHHHHT-TTCSSCCEEECCSSCCEESC--CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred             cCCCcccHHH-hcCCCCCEEECCCCcccCcc--CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence            9988877754 58999999999999998764  33489999999999999999999998765699999999999999999


Q ss_pred             chhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCC-CCCEEEccCccccccccccccC
Q 043567          443 ASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLT-QLQYLYLENNKFSGKIEEGLLK  521 (911)
Q Consensus       443 p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~  521 (911)
                      |..++.+++|++|++++|+++|.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+..
T Consensus       311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~  390 (768)
T 3rgz_A          311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ  390 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred             chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence            999999999999999999999999998888999999999999999999999999887 9999999999999999988877


Q ss_pred             --CCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccE
Q 043567          522 --SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEH  598 (911)
Q Consensus       522 --l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~  598 (911)
                        +++|++|++++|++++.+|..++++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+ .+++|++
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence              8899999999999999999999999999999999999999999999999999999999999999999988 8999999


Q ss_pred             EEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcC
Q 043567          599 LYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF  678 (911)
Q Consensus       599 L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  678 (911)
                      |++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..++++++|+.|++++|++
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccC
Q 043567          679 NGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG  758 (911)
Q Consensus       679 ~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  758 (911)
                      +|.+|..+.............  ......+.....             ...        .......+.+.   .......
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------------~~~--------~~~~~~~~~~~---~~~~~~~  604 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIA--GKRYVYIKNDGM-------------KKE--------CHGAGNLLEFQ---GIRSEQL  604 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTC--SCEEEEEECCSC-------------CTT--------CCSSEEEEECT---TCCGGGG
T ss_pred             CCcCChHHhcccchhhhhccc--cccccccccccc-------------ccc--------ccccccccccc---cccchhh
Confidence            999999887754322211110  000000000000             000        00000000000   0000001


Q ss_pred             CcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCe
Q 043567          759 SNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSN  838 (911)
Q Consensus       759 ~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  838 (911)
                      ..++.+..++++.|.++|.+|..++.+++|++|||++|+++|.||.+++++++|+.|||++|+++|.||..+++++.|++
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence            22345566889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcCeecCCCC-CCCCccCccccCCCCCCCC
Q 043567          839 FNVSYNNLSGLIPDK-GQFATFDESSYRGNLHLCG  872 (911)
Q Consensus       839 L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg  872 (911)
                      ||||+|+++|.||.. +.+..+....+.+|+ +.|
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g  718 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSG  718 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEE
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCc-ccc
Confidence            999999999999976 445555555555664 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-58  Score=559.14  Aligned_cols=610  Identities=21%  Similarity=0.214  Sum_probs=403.4

Q ss_pred             EEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEe
Q 043567          133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD  212 (911)
Q Consensus       133 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  212 (911)
                      .+|++++.++..+.     .+.  +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+ ..|.++++|++|+
T Consensus         8 ~~~cs~~~L~~ip~-----~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~   79 (680)
T 1ziw_A            8 VADCSHLKLTQVPD-----DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLN   79 (680)
T ss_dssp             EEECCSSCCSSCCS-----CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEE
T ss_pred             eeECCCCCcccccc-----ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEE
Confidence            45555555544322     222  566777777777666666667777777777777777664444 5566777777777


Q ss_pred             CCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCC
Q 043567          213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE  292 (911)
Q Consensus       213 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  292 (911)
                      +++|.++ .+|...|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.++
T Consensus        80 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           80 LQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             CCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            7777776 455545677777777777777776665566777777777777777777666666777777777777777766


Q ss_pred             CccChhhhc--ccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCC-ChhhhccCCCCEEECCCCCCCCCCc
Q 043567          293 GTFPLSSLA--NHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI-PPFLLHQFDLKYLDLSHNDLDGAFP  369 (911)
Q Consensus       293 ~~~p~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p  369 (911)
                      +..+ ..+.  .+++|                         ++|++++|.+..+ |..+..+.+|+.|+++++.+.+...
T Consensus       159 ~~~~-~~~~~~~~~~L-------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          159 ALKS-EELDIFANSSL-------------------------KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             CBCH-HHHGGGTTCEE-------------------------SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred             ccCH-HHhhccccccc-------------------------cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence            4333 2222  12233                         3333333333222 2233344445555555554432111


Q ss_pred             hhhh--hcCCcccEEEccCCccccccCCCCCCCC--CccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchh
Q 043567          370 TWAL--QNNTKLEVLLLTNNSFTGNLQLPDDKHD--FLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASS  445 (911)
Q Consensus       370 ~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~  445 (911)
                      ..+.  ...++|+.|++++|.+.+..+..+..++  +|++|++++|.+++..|..+. .+++|++|++++|.+++..|..
T Consensus       213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~  291 (680)
T 1ziw_A          213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHS  291 (680)
T ss_dssp             HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTT
T ss_pred             HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhh
Confidence            1110  0124455555555544443322232222  255555555555544444443 3566666666666666666666


Q ss_pred             hhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCC
Q 043567          446 IAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKL  525 (911)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  525 (911)
                      +..+++|++|++++|...+.++..                .+.......+..+++|++|++++|++++..+..+..+++|
T Consensus       292 ~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  355 (680)
T 1ziw_A          292 LHGLFNVRYLNLKRSFTKQSISLA----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL  355 (680)
T ss_dssp             TTTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred             hcCCCCccEEeccchhhhcccccc----------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence            666666666666655443322210                0111111256677788888888888887777777778888


Q ss_pred             cEEECcCCcCccc--CCcCccCc--CCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccC-ccc-ccccccEE
Q 043567          526 VELRMSSNMLSGH--IPHWMGNL--SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMT-TSF-NISSVEHL  599 (911)
Q Consensus       526 ~~L~Ls~n~l~~~--~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~-~~~-~~~~L~~L  599 (911)
                      ++|++++|.+.+.  .+..+..+  ++|+.|++++|++++..|..+..+++|++|++++|.+.+.+| ..+ .+++|++|
T Consensus       356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L  435 (680)
T 1ziw_A          356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI  435 (680)
T ss_dssp             CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE
T ss_pred             cEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE
Confidence            8888888775432  12233332  578888888888887778888888888888888888887665 344 78888899


Q ss_pred             EcccCcccccccccccCCCCCCEEeCCCCccc--ccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567          600 YLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS--GVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK  677 (911)
Q Consensus       600 ~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~  677 (911)
                      ++++|++++..+..+..+++|+.|++++|.+.  +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus       436 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN  515 (680)
T ss_dssp             ECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence            99999888888888889999999999999887  5788899999999999999999998778889999999999999999


Q ss_pred             CCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeecc
Q 043567          678 FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN  757 (911)
Q Consensus       678 l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (911)
                      +++..+..+....                                                                ...
T Consensus       516 l~~~~~~~~~~~~----------------------------------------------------------------~~~  531 (680)
T 1ziw_A          516 LARLWKHANPGGP----------------------------------------------------------------IYF  531 (680)
T ss_dssp             CGGGGSTTSTTSC----------------------------------------------------------------CCT
T ss_pred             ccccchhhccCCc----------------------------------------------------------------chh
Confidence            8753322111000                                                                000


Q ss_pred             CCcCccccEEEcccCcccccCC-ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCC-CCCC
Q 043567          758 GSNLDYMVGLDLSCNKLTGEIP-SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT-ELNF  835 (911)
Q Consensus       758 ~~~l~~L~~LdLs~N~l~g~ip-~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~  835 (911)
                      ...++.|+.|||++|+++ .+| ..++++++|++|+|++|++++..|..|.++++|+.|||++|++++..|..+. .++.
T Consensus       532 ~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  610 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN  610 (680)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred             hcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence            123568899999999999 555 5689999999999999999987777889999999999999999998887776 7889


Q ss_pred             CCeEeccCCcCeecCCCCCCCCcc
Q 043567          836 LSNFNVSYNNLSGLIPDKGQFATF  859 (911)
Q Consensus       836 L~~L~ls~N~l~g~iP~~~~~~~~  859 (911)
                      |+++++++|++.+..+....|..+
T Consensus       611 L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          611 LTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             CSEEECTTCCCCBCCCCCSSEECC
T ss_pred             cCEEEccCCCcccCCccHHHHHHH
Confidence            999999999999987653334333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.3e-58  Score=555.79  Aligned_cols=584  Identities=21%  Similarity=0.227  Sum_probs=451.4

Q ss_pred             cEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEecc
Q 043567          160 KILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE  239 (911)
Q Consensus       160 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  239 (911)
                      +.+|++++.++. +|..+.  +++++|++++|.+++ ++...|.++++|++|++++|.+++..| ..|+++++|++|+|+
T Consensus         7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECC
T ss_pred             CeeECCCCCccc-cccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECC
Confidence            568888888863 555554  789999999999885 444678899999999999999985444 468889999999999


Q ss_pred             CCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcccc
Q 043567          240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ  319 (911)
Q Consensus       240 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~  319 (911)
                      +|.+++..+..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..| ..+.++                
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l----------------  144 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQL----------------  144 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCC----------------
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhccc----------------
Confidence            999988655678999999999999999987777888999999999999998875544 233333                


Q ss_pred             ccccCcCCCCCceEEECCCCCCCCCChhh---hccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCC
Q 043567          320 VQTENFLPTFQLKVLRLPNCSLNVIPPFL---LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP  396 (911)
Q Consensus       320 ~~~~~~~~~~~L~~L~L~~n~l~~ip~~l---~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  396 (911)
                               ++|++|++++|.+..+++..   ..+++|++|++++|.+++..|. .+..+++|+.|++.++.+.      
T Consensus       145 ---------~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~------  208 (680)
T 1ziw_A          145 ---------ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLG------  208 (680)
T ss_dssp             ---------TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCH------
T ss_pred             ---------ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccC------
Confidence                     34444444555555544332   2335666666666666644433 2335555555555544433      


Q ss_pred             CCCCCCccEEEccCCcCCcCCChhHHH--hccCCcEEEcccCccccccchhhhcCCC--CcEEeccCcccCCcccHHHHh
Q 043567          397 DDKHDFLHHLDISSNNFTGKLPQDMGI--ILQKLLYMDMSNNHFEGNIASSIAEMKE--LRFLDLSKNNFSGELSAALLT  472 (911)
Q Consensus       397 ~~~~~~L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~g~i~~~~~~  472 (911)
                                        +.....+..  ..++|++|++++|.+++..|..+..++.  |++|++++|++++..+ ..+.
T Consensus       209 ------------------~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~  269 (680)
T 1ziw_A          209 ------------------PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFA  269 (680)
T ss_dssp             ------------------HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTT
T ss_pred             ------------------hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-cccc
Confidence                              221111111  1367777777777777777777776654  7788887777764333 3346


Q ss_pred             cccccceeeccCcccccccCCCCCCCCCCCEEEccCccccc-----cccc----cccCCCCCcEEECcCCcCcccCCcCc
Q 043567          473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG-----KIEE----GLLKSKKLVELRMSSNMLSGHIPHWM  543 (911)
Q Consensus       473 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~l  543 (911)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|...+     .+|.    .+..+++|++|++++|++++..+..+
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF  349 (680)
T ss_dssp             TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred             CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence            77778888888888877777788888888888888776543     2332    67889999999999999999889999


Q ss_pred             cCcCCCcEEEccCccccccc-c-hhhcc--CCCCcEEEccCcccccccCccc-ccccccEEEcccCccccccc-ccccCC
Q 043567          544 GNLSYLEVLLMSKNFFEGNI-P-VQLLN--HRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIP-IALFRS  617 (911)
Q Consensus       544 ~~l~~L~~L~L~~n~l~~~~-p-~~l~~--~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p-~~l~~~  617 (911)
                      ..+++|++|++++|.+.+.. + ..+..  .++|+.|++++|++++..|..+ .+++|++|++++|++++.+| ..+.++
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence            99999999999999865332 2 22332  3689999999999999988888 89999999999999998776 688899


Q ss_pred             CCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccc--ccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccC
Q 043567          618 SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLE--GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVG  695 (911)
Q Consensus       618 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~  695 (911)
                      ++|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..+..+++|+.|++++|++++..|..+..       
T Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------  502 (680)
T 1ziw_A          430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------  502 (680)
T ss_dssp             TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-------
T ss_pred             ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-------
Confidence            99999999999999998999999999999999999987  678999999999999999999999766655543       


Q ss_pred             CccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc
Q 043567          696 NLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT  775 (911)
Q Consensus       696 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  775 (911)
                                                                                       ++.|+.||+++|+++
T Consensus       503 -----------------------------------------------------------------l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          503 -----------------------------------------------------------------LEKLEILDLQHNNLA  517 (680)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCSSCCG
T ss_pred             -----------------------------------------------------------------ccccCEEeCCCCCcc
Confidence                                                                             346788999999998


Q ss_pred             ccCC--------ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCe
Q 043567          776 GEIP--------SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLS  847 (911)
Q Consensus       776 g~ip--------~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  847 (911)
                      +..+        ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..|..+..++.|++|++++|+++
T Consensus       518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            6422        34789999999999999999555567999999999999999999877777899999999999999999


Q ss_pred             ecCCCC-C-CCCccCccccCCCCCCCC
Q 043567          848 GLIPDK-G-QFATFDESSYRGNLHLCG  872 (911)
Q Consensus       848 g~iP~~-~-~~~~~~~~~~~gn~~lcg  872 (911)
                      +.+|.. . .+..+....+.|||..|.
T Consensus       598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          598 SVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             BCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             ccChhHhcccccccCEEEccCCCcccC
Confidence            987753 2 455666677899999995

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.2e-53  Score=507.50  Aligned_cols=522  Identities=22%  Similarity=0.180  Sum_probs=343.8

Q ss_pred             CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567          129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL  208 (911)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  208 (911)
                      +.+++||+++|.+++..+    ..|+++++|++|++++|.+.+..|..|.++++|++|+|++|++.+..| ..|.++++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTC
T ss_pred             CcCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccc
Confidence            367788888888777666    567777778888888777777777777777777777777777764444 567777777


Q ss_pred             CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCC--eeec
Q 043567          209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE--YLAL  286 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L  286 (911)
                      ++|++++|+++ .++...++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+  +|++
T Consensus       108 ~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          108 KHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred             cEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence            77777777776 34333477777777777777777764333444477777777777777766666677777777  6677


Q ss_pred             cCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC
Q 043567          287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG  366 (911)
Q Consensus       287 ~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~  366 (911)
                      ++|.+++..|                                                  ......+|++|++++|.   
T Consensus       187 ~~n~l~~~~~--------------------------------------------------~~~~~~~L~~L~l~~~~---  213 (606)
T 3t6q_A          187 NGNDIAGIEP--------------------------------------------------GAFDSAVFQSLNFGGTQ---  213 (606)
T ss_dssp             TTCCCCEECT--------------------------------------------------TTTTTCEEEEEECTTCS---
T ss_pred             CCCccCccCh--------------------------------------------------hHhhhccccccccCCch---
Confidence            7776664433                                                  11222234444444443   


Q ss_pred             CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhcc--CCcEEEcccCccccccch
Q 043567          367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ--KLLYMDMSNNHFEGNIAS  444 (911)
Q Consensus       367 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~--~L~~L~Ls~n~l~~~~p~  444 (911)
                      .++. .+..+..++...+....+.+           +...         .++...+..+.  +|++|++++|.+++..+.
T Consensus       214 ~~~~-~~~~l~~~~l~~l~~~~~~~-----------~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          214 NLLV-IFKGLKNSTIQSLWLGTFED-----------MDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             CHHH-HHHHTTTCEEEEEECCCCTT-----------SCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             hHHH-Hhhhccccchhheechhhcc-----------cccc---------ccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            1222 12233333333222221111           0000         11111111111  456666666666655555


Q ss_pred             hhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCC
Q 043567          445 SIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKK  524 (911)
Q Consensus       445 ~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  524 (911)
                      .+..+++|++|++++|+++ .                         +|..+..+++|++|++++|++++..|..+..+++
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~-------------------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  326 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-E-------------------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS  326 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-C-------------------------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred             HhccccCCCEEeccCCccC-C-------------------------CChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence            5555566666666555554 2                         3344555666677777777666666666666677


Q ss_pred             CcEEECcCCcCcccCCc-CccCcCCCcEEEccCccccccc--chhhccCCCCcEEEccCcccccccCcccccccccEEEc
Q 043567          525 LVELRMSSNMLSGHIPH-WMGNLSYLEVLLMSKNFFEGNI--PVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYL  601 (911)
Q Consensus       525 L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L  601 (911)
                      |++|++++|.+.+.+|. .+..+++|++|++++|.+++..  |..+..+                       ++|++|++
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-----------------------~~L~~L~l  383 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-----------------------SHLQSLNL  383 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC-----------------------TTCCEEEC
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC-----------------------CCCCEEEC
Confidence            77777777766655543 3666666666666666665443  3344444                       44555555


Q ss_pred             ccCcccccccccccCCCCCCEEeCCCCcccccCchh-hhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567          602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQ-INECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       602 s~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g  680 (911)
                      ++|++.+..|..+..+++|++|++++|++.+..|.. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++
T Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            555555555666667777777777777777665543 7777888888888888877777778888888888888888765


Q ss_pred             CC-C--cccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeecc
Q 043567          681 SI-P--SCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN  757 (911)
Q Consensus       681 ~i-p--~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (911)
                      .. |  ..+.                                                                      
T Consensus       464 ~~~~~~~~~~----------------------------------------------------------------------  473 (606)
T 3t6q_A          464 GNIQKTNSLQ----------------------------------------------------------------------  473 (606)
T ss_dssp             GEECSSCGGG----------------------------------------------------------------------
T ss_pred             cccccchhhc----------------------------------------------------------------------
Confidence            21 1  1111                                                                      


Q ss_pred             CCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCC
Q 043567          758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS  837 (911)
Q Consensus       758 ~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  837 (911)
                        .++.|+.|++++|++++.+|..++.+++|+.|+|++|++++.+|+.+++++.| .||+++|++++.+|..+..++.|+
T Consensus       474 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          474 --TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             --GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             --cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence              23577889999999998888999999999999999999999999999999999 999999999988888888899999


Q ss_pred             eEeccCCcCeecCCC
Q 043567          838 NFNVSYNNLSGLIPD  852 (911)
Q Consensus       838 ~L~ls~N~l~g~iP~  852 (911)
                      ++++++|++++..+.
T Consensus       551 ~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          551 TINLRQNPLDCTCSN  565 (606)
T ss_dssp             EEECTTCCEECSGGG
T ss_pred             EEeCCCCCccccCCc
Confidence            999999999987663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.7e-53  Score=508.54  Aligned_cols=531  Identities=20%  Similarity=0.180  Sum_probs=437.7

Q ss_pred             ccceeecCC---------CCcEEEEecCCCCcccccccccccCCcccccccccccCCCCCCEEeCCCCCCCcccCccccc
Q 043567           81 WKGVRCNAT---------TGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYD  151 (911)
Q Consensus        81 w~gv~C~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  151 (911)
                      +..|.|...         ...++.+++++..+              ..+....|..+++|++|+|++|.+.+..+    .
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i--------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~   75 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVL--------------PTIQNTTFSRLINLTFLDLTRCQIYWIHE----D   75 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCC--------------SEECTTTSTTCTTCSEEECTTCCCCEECT----T
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCcc--------------CcCChhHhccCccceEEECCCCccceeCh----h
Confidence            455778642         24678889888776              34556689999999999999999999877    7


Q ss_pred             ccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCC
Q 043567          152 TLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK  231 (911)
Q Consensus       152 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~  231 (911)
                      +|+++++|++|++++|.+.+..|..|+++++|++|++++|++++..+ ..+.++++|++|++++|++++ ++...+..++
T Consensus        76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~  153 (606)
T 3t6q_A           76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISS-IKLPKGFPTE  153 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCC-CCCCTTCCCT
T ss_pred             hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc-chhccCCcccEEECCCCcccc-cCcccccCCc
Confidence            89999999999999999999999999999999999999999985433 568999999999999999985 3222366699


Q ss_pred             CCCEEeccCCcCCCCCCcccCCCCCCc--EEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEE
Q 043567          232 NLFVLNLEKNNIEDHLPNCLNNMTRLK--VLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVL  309 (911)
Q Consensus       232 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L  309 (911)
                      +|++|++++|.+++..|..++.+++|+  .|++++|.+++..|..+.. .+|++|++++|.   .++ ..+..+..++..
T Consensus       154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~-~~~~~l~~~~l~  228 (606)
T 3t6q_A          154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLL-VIFKGLKNSTIQ  228 (606)
T ss_dssp             TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHH-HHHHHTTTCEEE
T ss_pred             ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHH-HHhhhccccchh
Confidence            999999999999998888999999999  9999999999877766654 689999999886   222 344455444433


Q ss_pred             EecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCC--cccEEEccCC
Q 043567          310 LLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNT--KLEVLLLTNN  387 (911)
Q Consensus       310 ~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~n  387 (911)
                      .+.                       +....            .+..     .    .++...+..+.  +|+.|++++|
T Consensus       229 ~l~-----------------------~~~~~------------~~~~-----~----~i~~~~~~~l~~~~L~~L~l~~n  264 (606)
T 3t6q_A          229 SLW-----------------------LGTFE------------DMDD-----E----DISPAVFEGLCEMSVESINLQKH  264 (606)
T ss_dssp             EEE-----------------------CCCCT------------TSCC-----C----CCCGGGGGGGGGSEEEEEECTTC
T ss_pred             hee-----------------------chhhc------------cccc-----c----ccChhHhchhhcCceeEEEeecC
Confidence            331                       11100            0000     0    11111222222  4666666666


Q ss_pred             ccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCccc
Q 043567          388 SFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS  467 (911)
Q Consensus       388 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~  467 (911)
                      .+++..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             ccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            666554444556777777788888777 7787765 38899999999999998888889999999999999999988888


Q ss_pred             HHHHhcccccceeeccCccccccc--CCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCc-Ccc
Q 043567          468 AALLTSCFSLLWLGLSDNNFYGRI--FPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPH-WMG  544 (911)
Q Consensus       468 ~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~  544 (911)
                      ...+..+++|++|++++|.+.+..  +..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..|. .+.
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  422 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ  422 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred             hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence            877788999999999999998876  77889999999999999999988899999999999999999999977665 489


Q ss_pred             CcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccccc---Cccc-ccccccEEEcccCcccccccccccCCCCC
Q 043567          545 NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFM---TTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNL  620 (911)
Q Consensus       545 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~---~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L  620 (911)
                      .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..   +..+ .+++|++|++++|++++..|..+..+++|
T Consensus       423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence            9999999999999999888999999999999999999998732   2334 88999999999999999889999999999


Q ss_pred             CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCC
Q 043567          621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP  683 (911)
Q Consensus       621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip  683 (911)
                      ++|++++|++++..|.++.+++.| +|++++|++++.+|..+..+++|+.+++++|++++..+
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999999 99999999999999999999999999999999987555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.6e-53  Score=505.71  Aligned_cols=525  Identities=20%  Similarity=0.179  Sum_probs=341.3

Q ss_pred             CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEE
Q 043567          157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL  236 (911)
Q Consensus       157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  236 (911)
                      ++|++|++++|.+++..+..|.++++|++|++++|++++..+ ..|.++++|++|+|++|.+++..| ..|+++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEE
Confidence            556666666666666666666667777777777776664333 556777777777777777764334 347777777777


Q ss_pred             eccCCcCCCCCCcccCCCCCCcEEEccCCcCCc-cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567          237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN  315 (911)
Q Consensus       237 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~  315 (911)
                      ++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..| ..++.+++|+.       
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-------  181 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQ-------  181 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTT-------
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhcccc-------
Confidence            777777777666667777777777777777765 457777777777777777777774433 44554444431       


Q ss_pred             ccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCC
Q 043567          316 NMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQL  395 (911)
Q Consensus       316 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  395 (911)
                                    .++++++++|.+..+++......+|++|++++|.+++......+.+++.|+.+++..+.+.+....
T Consensus       182 --------------~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l  247 (606)
T 3vq2_A          182 --------------VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL  247 (606)
T ss_dssp             --------------CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             --------------ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence                          133556666666666666666667888888888776544444456777777777655444322100


Q ss_pred             CCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEc-ccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcc
Q 043567          396 PDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDM-SNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSC  474 (911)
Q Consensus       396 ~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~  474 (911)
                      .        .       +.+..+..+..  -.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+        
T Consensus       248 ~--------~-------~~~~~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l--------  300 (606)
T 3vq2_A          248 E--------I-------FEPSIMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YL--------  300 (606)
T ss_dssp             S--------C-------CCGGGGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CC--------
T ss_pred             c--------c-------cChHHhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hh--------
Confidence            0        0       00011111110  12333333 33344443333 444444444444444332 11        


Q ss_pred             cccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEc
Q 043567          475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLM  554 (911)
Q Consensus       475 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  554 (911)
                                       + .+..+++|++|++++|++ +.+| .+ .+++|++|++++|+..+.+  .+..+++|++|++
T Consensus       301 -----------------~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  357 (606)
T 3vq2_A          301 -----------------E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL  357 (606)
T ss_dssp             -----------------C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred             -----------------h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence                             1 344455555666666555 3445 23 5555566665555443332  3445555555555


Q ss_pred             cCcccccc--cchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc
Q 043567          555 SKNFFEGN--IPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG  632 (911)
Q Consensus       555 ~~n~l~~~--~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~  632 (911)
                      ++|.+++.  +|..+..++                       +|++|++++|.+++ +|..+..+++|+.|++++|++.+
T Consensus       358 s~n~l~~~~~~~~~~~~~~-----------------------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~  413 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLGTN-----------------------SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR  413 (606)
T ss_dssp             CSSCEEEEEECCHHHHCCS-----------------------CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred             cCCccCCCcchhhhhccCC-----------------------cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence            55555533  244444444                       44555555555442 45666777788888888888887


Q ss_pred             cCc-hhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC-CCcccccccccccCCccccccccchhhhh
Q 043567          633 VIP-HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS-IPSCFTNITLWSVGNLDRYRLEHLTFVER  710 (911)
Q Consensus       633 ~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~~~~~~~~~~~~~~l~~l~~  710 (911)
                      ..| ..+..+++|++|++++|++++.+|..+..+++|++|++++|++++. +|..+..                      
T Consensus       414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------  471 (606)
T 3vq2_A          414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN----------------------  471 (606)
T ss_dssp             TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------
T ss_pred             ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc----------------------
Confidence            766 5778888888888888888888888888888888888888888763 4544433                      


Q ss_pred             ccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCE
Q 043567          711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV  790 (911)
Q Consensus       711 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~  790 (911)
                                                                        ++.|+.||+++|++++.+|..++.+++|++
T Consensus       472 --------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          472 --------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             --------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCE
Confidence                                                              346788999999999888999999999999


Q ss_pred             EECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCC-CCCeEeccCCcCeecCCC
Q 043567          791 LNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELN-FLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       791 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~  852 (911)
                      |+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ .|+++++++|++.+..|.
T Consensus       502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999999999999999999999999 6888888887 599999999999987764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.1e-52  Score=510.50  Aligned_cols=573  Identities=20%  Similarity=0.182  Sum_probs=387.8

Q ss_pred             EEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEe
Q 043567          133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD  212 (911)
Q Consensus       133 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  212 (911)
                      ..|.+++.++..+      .  -.++|++|||++|.+++..+..|.++++|++|+|++|...+.+++..|.++++|++|+
T Consensus         8 ~~dcs~~~L~~vP------~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            8 IAFYRFCNLTQVP------Q--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             EEEESCCCSSCCC------S--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             EEEccCCCCCCCC------C--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            4566666665542      1  2355666666666666655666666666666666666544455445555556666666


Q ss_pred             CCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcc--cCCCCCCcEEEccCCcCCccCc-ccccCCCCCCeeeccCC
Q 043567          213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC--LNNMTRLKVLDISFNQLSGSFP-SIISNLTSLEYLALFDN  289 (911)
Q Consensus       213 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n  289 (911)
                      |++|.+++..| ..|+++++|++|+|++|.+++.+|..  +.++++|++|+|++|.+++..+ ..|+++++|++|++++|
T Consensus        80 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           80 LGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            66555553323 23555555555555555555544333  5555555555555555554432 34555555555555555


Q ss_pred             cCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhcc--CCCCEEECCCCCCCCC
Q 043567          290 NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ--FDLKYLDLSHNDLDGA  367 (911)
Q Consensus       290 ~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~--~~L~~L~Ls~n~l~~~  367 (911)
                      .+++..+                                                 ..+..+  ++|+.|+++.|.+.+.
T Consensus       159 ~i~~~~~-------------------------------------------------~~l~~l~~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          159 QIFLVCE-------------------------------------------------HELEPLQGKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             CCCCCCS-------------------------------------------------GGGHHHHHCSSCCCEECCSBSCCC
T ss_pred             cCCeeCH-------------------------------------------------HHcccccCCccceEECCCCccccc
Confidence            5543322                                                 122222  4566677777766655


Q ss_pred             CchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhc--cCCcEEEcccCccccccchh
Q 043567          368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIIL--QKLLYMDMSNNHFEGNIASS  445 (911)
Q Consensus       368 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~p~~  445 (911)
                      .|..+. .+++                 ++ ....|++|++++|.+++.+|..+...+  .+++.+.++.+.+...    
T Consensus       190 ~~~~~~-~~~~-----------------~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~----  246 (844)
T 3j0a_A          190 VSVDWG-KCMN-----------------PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG----  246 (844)
T ss_dssp             CCCCCC-SSSC-----------------TT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS----
T ss_pred             cccchh-hcCC-----------------cc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc----
Confidence            443211 1110                 00 112477777777777777776664322  4566666664432211    


Q ss_pred             hhcCCCCcEEeccCcccCCcccHHHHhc--ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCC
Q 043567          446 IAEMKELRFLDLSKNNFSGELSAALLTS--CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK  523 (911)
Q Consensus       446 l~~l~~L~~L~Ls~n~l~g~i~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  523 (911)
                                 ...+.+.+ +....+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..++
T Consensus       247 -----------~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  314 (844)
T 3j0a_A          247 -----------FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD  314 (844)
T ss_dssp             -----------SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred             -----------ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence                       11222221 11111222  36788888888888887788888888999999999998888888888888


Q ss_pred             CCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEccc
Q 043567          524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK  603 (911)
Q Consensus       524 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~  603 (911)
                      +|++|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++...    +++|+.|++++
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~  390 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSG  390 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEES
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCC
Confidence            99999999999888888888889999999999998887777778888999999999998876433    67899999999


Q ss_pred             CcccccccccccCCCCCCEEeCCCCcccccC-chhhhcCCCccEEEccCCcccccCCh-hhhcCCCCCeEEcCCCcCCCC
Q 043567          604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVI-PHQINECSNLRFLLLRGNNLEGQIPN-QICQLTGLGMMDLSHNKFNGS  681 (911)
Q Consensus       604 n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~g~  681 (911)
                      |+++ .+|..   ..+++.|++++|++++.- +..+..+++|++|+|++|++++..+. .+..+++|+.|+|++|.+++.
T Consensus       391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  466 (844)
T 3j0a_A          391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA  466 (844)
T ss_dssp             CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred             CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence            9998 55544   467999999999998642 33467899999999999999865443 355689999999999998744


Q ss_pred             CCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcC
Q 043567          682 IPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNL  761 (911)
Q Consensus       682 ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  761 (911)
                      .+..+..-                                                                   ....+
T Consensus       467 ~~~~~~~~-------------------------------------------------------------------~~~~l  479 (844)
T 3j0a_A          467 WETELCWD-------------------------------------------------------------------VFEGL  479 (844)
T ss_dssp             CCSCCCSS-------------------------------------------------------------------CSSCB
T ss_pred             cccccchh-------------------------------------------------------------------hhcCc
Confidence            33211000                                                                   00224


Q ss_pred             ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567          762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV  841 (911)
Q Consensus       762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  841 (911)
                      +.|+.|||++|++++.+|..+..+++|+.|+|++|++++..|..+.  ++|+.|||++|++++.+|..+.   .|+++++
T Consensus       480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l  554 (844)
T 3j0a_A          480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI  554 (844)
T ss_dssp             CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred             ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEe
Confidence            5788999999999999999999999999999999999988887776  8999999999999999998765   6889999


Q ss_pred             cCCcCeecCCCCCCCCccCccccCCCCCCCCCccCCCCCCC
Q 043567          842 SYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNGV  882 (911)
Q Consensus       842 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c~~~  882 (911)
                      ++|++.+..+.    ..|......+|..+||.+....|...
T Consensus       555 ~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          555 THNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             EEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             cCCCccccccc----HHHHHHHHhcCcccccccccCccCCc
Confidence            99999987763    23332233567788888877778643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-51  Score=491.38  Aligned_cols=537  Identities=19%  Similarity=0.183  Sum_probs=393.1

Q ss_pred             CCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEc
Q 043567          183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDI  262 (911)
Q Consensus       183 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  262 (911)
                      .++++.+++.++ .+|.. +  .++|++|++++|.++ .++...|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        13 ~~~~~c~~~~l~-~ip~~-~--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           13 NITYQCMDQKLS-KVPDD-I--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTEEECTTSCCS-SCCTT-S--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCceEccCCCcc-cCCCC-C--CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            356777777765 45522 2  256777777777776 344445777777777777777777766667777777777777


Q ss_pred             cCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC
Q 043567          263 SFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN  342 (911)
Q Consensus       263 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  342 (911)
                      ++|.+++..|..|+++++|++|++++|.+++..+                                              
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----------------------------------------------  121 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLES----------------------------------------------  121 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS----------------------------------------------
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCccccccc----------------------------------------------
Confidence            7777776667777777777777777776653222                                              


Q ss_pred             CCChhhhccCCCCEEECCCCCCCC-CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCc----cEEEccCCcCCcCC
Q 043567          343 VIPPFLLHQFDLKYLDLSHNDLDG-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL----HHLDISSNNFTGKL  417 (911)
Q Consensus       343 ~ip~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~ls~n~l~~~i  417 (911)
                         ..+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+..+..+++|    ++|++++|.++ .+
T Consensus       122 ---~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~  196 (606)
T 3vq2_A          122 ---FPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FI  196 (606)
T ss_dssp             ---SCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EE
T ss_pred             ---cccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-ee
Confidence               234455678888899999875 567654 478888888888888776543333333333    36666666666 34


Q ss_pred             ChhHHHhccCCcEEEcccCccc-cccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCC
Q 043567          418 PQDMGIILQKLLYMDMSNNHFE-GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM  496 (911)
Q Consensus       418 p~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  496 (911)
                      |...+. ..+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+..         .+..       +....+..+.
T Consensus       197 ~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l~~-------~~~~~~~~l~  259 (606)
T 3vq2_A          197 QDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---------NLEI-------FEPSIMEGLC  259 (606)
T ss_dssp             CTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---------CCSC-------CCGGGGTTGG
T ss_pred             Cccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCC---------cccc-------cChHHhhhhh
Confidence            444333 236666666666665 345556666666666666544433110         0000       0111122222


Q ss_pred             CCCCCCEEEc-cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcE
Q 043567          497 NLTQLQYLYL-ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL  575 (911)
Q Consensus       497 ~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~  575 (911)
                      .+ .++.+++ ..|.+.+.+|. +..+++|++|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.
T Consensus       260 ~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~  332 (606)
T 3vq2_A          260 DV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKS  332 (606)
T ss_dssp             GS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCE
T ss_pred             hc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccce
Confidence            22 4566666 66777777776 777888888888888886 455 777888888888888888 5777 44 8888888


Q ss_pred             EEccCcccccccCcccccccccEEEcccCccccc--ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCc
Q 043567          576 FSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP--IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN  653 (911)
Q Consensus       576 L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  653 (911)
                      |++++|...+.+ ....+++|++|++++|++++.  +|..+..+++|++|++++|.+++ +|..+..+++|++|++++|+
T Consensus       333 L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          333 LTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             EEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred             eeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence            888888655544 223788999999999998876  48889999999999999999985 67889999999999999999


Q ss_pred             ccccCC-hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCC
Q 043567          654 LEGQIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE  732 (911)
Q Consensus       654 l~~~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~  732 (911)
                      +.+..| ..+..+++|+.|++++|++++.+|..+..+                                           
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------------  447 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-------------------------------------------  447 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-------------------------------------------
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-------------------------------------------
Confidence            998888 688999999999999999998877765443                                           


Q ss_pred             CCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccc-cCCccccCCCCCCEEECCCCcCCccccccccccCC
Q 043567          733 ERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG-EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM  811 (911)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~  811 (911)
                                                   ++|+.|++++|++++ .+|..++.+++|++|+|++|++++.+|..++++++
T Consensus       448 -----------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          448 -----------------------------TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             -----------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             -----------------------------CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence                                         468889999999998 48999999999999999999999999999999999


Q ss_pred             CCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCC-CCCC-ccCccccCCCCCCCCCc
Q 043567          812 IESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK-GQFA-TFDESSYRGNLHLCGPT  874 (911)
Q Consensus       812 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn~~lcg~~  874 (911)
                      |++|+|++|++++.+|..+..++.|++|++++|+++ .+|.. ..+. .+....+.|||..|..+
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999999999999999999999999 56654 2332 25556688999998543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-53  Score=504.32  Aligned_cols=306  Identities=19%  Similarity=0.233  Sum_probs=203.8

Q ss_pred             CccEEEccCCc-CCc-CCChhHHH-----hccCCcEEEcccCccccccch--hhhcCCCCcEEeccCcccCCcccHHHHh
Q 043567          402 FLHHLDISSNN-FTG-KLPQDMGI-----ILQKLLYMDMSNNHFEGNIAS--SIAEMKELRFLDLSKNNFSGELSAALLT  472 (911)
Q Consensus       402 ~L~~L~ls~n~-l~~-~ip~~~~~-----~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~g~i~~~~~~  472 (911)
                      +|++|++++|+ ++| .+|..++.     .+++|++|++++|+++ .+|.  .++.+++|++|++++|+++|.+|  .+.
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~  350 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG  350 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhC
Confidence            33444444444 444 45555543     1267777777777777 6666  67777777777777777777777  345


Q ss_pred             cccccceeeccCcccccccCCCCCCCCC-CCEEEccCccccccccccccCCC--CCcEEECcCCcCcccCCcCcc-----
Q 043567          473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQ-LQYLYLENNKFSGKIEEGLLKSK--KLVELRMSSNMLSGHIPHWMG-----  544 (911)
Q Consensus       473 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~-----  544 (911)
                      .+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+...+  +|++|++++|++++.+|..+.     
T Consensus       351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            6666777777777666 55666666666 777777777776 5666655543  677777777777766666666     


Q ss_pred             --CcCCCcEEEccCcccccccchhh-ccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCC
Q 043567          545 --NLSYLEVLLMSKNFFEGNIPVQL-LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLL  621 (911)
Q Consensus       545 --~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~  621 (911)
                        .+++|++|++++|+++ .+|..+ ..+++|++|++++|+++...+..+..                .+..+.++++|+
T Consensus       429 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------~~~~~~~l~~L~  491 (636)
T 4eco_A          429 PFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD----------------ENENFKNTYLLT  491 (636)
T ss_dssp             CCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE----------------TTEECTTGGGCC
T ss_pred             cccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc----------------ccccccccCCcc
Confidence              5556666666666666 344333 33555555555555555222211100                000122334788


Q ss_pred             EEeCCCCcccccCchhhh--cCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567          622 TLDLRDNGFSGVIPHQIN--ECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR  699 (911)
Q Consensus       622 ~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~  699 (911)
                      +|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+.++++|+.|+|++|+                      
T Consensus       492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~----------------------  547 (636)
T 4eco_A          492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR----------------------  547 (636)
T ss_dssp             EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB----------------------
T ss_pred             EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc----------------------
Confidence            8888888888 6787776  88888888888888887 88888888888888887765                      


Q ss_pred             cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567          700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP  779 (911)
Q Consensus       700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  779 (911)
                                                                                          ++++|++.+.+|
T Consensus       548 --------------------------------------------------------------------~ls~N~l~~~~p  559 (636)
T 4eco_A          548 --------------------------------------------------------------------DAQGNRTLREWP  559 (636)
T ss_dssp             --------------------------------------------------------------------CTTCCBCCCCCC
T ss_pred             --------------------------------------------------------------------ccccCcccccCh
Confidence                                                                                145677777888


Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                      ..++.+++|++|+|++|++ +.+|..+.  ++|+.|||++|++..
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             HHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            8888888888888888888 67787766  688888888887664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-50  Score=495.13  Aligned_cols=536  Identities=21%  Similarity=0.228  Sum_probs=394.8

Q ss_pred             EEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccC
Q 043567          161 ILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK  240 (911)
Q Consensus       161 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~  240 (911)
                      ..|.+++.++. +|.   -.+++++|+|++|.+++..+ ..|.++++|++|+|++|...+.++...|+++++|++|+|++
T Consensus         8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            45666666663 333   34566777777776664333 45666666666666666555555545566666666666666


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCcCCccCccc--ccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccc
Q 043567          241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI--ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNML  318 (911)
Q Consensus       241 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~  318 (911)
                      |.+++..|..|.++++|++|+|++|.+++.+|..  ++++++|++|+|++|.+++..+                      
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~----------------------  140 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL----------------------  140 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----------------------
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc----------------------
Confidence            6666666666666666666666666666544443  5566666666666665543222                      


Q ss_pred             cccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcC--CcccEEEccCCccccccCCC
Q 043567          319 QVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNN--TKLEVLLLTNNSFTGNLQLP  396 (911)
Q Consensus       319 ~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~~  396 (911)
                                                +..+.++++|++|++++|.+++..+..+. .+  ++|+.|+++.|.+.+.    
T Consensus       141 --------------------------~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~----  189 (844)
T 3j0a_A          141 --------------------------HPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSR----  189 (844)
T ss_dssp             --------------------------CGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCC----
T ss_pred             --------------------------chhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccc----
Confidence                                      12345556677788888877766555432 33  5555555555555432    


Q ss_pred             CCCCCCccEEEccCCcCCcCCChhHHH-----hccCCcEEEcccCccccccchhhhcC---CCCcEEeccCcccCCcccH
Q 043567          397 DDKHDFLHHLDISSNNFTGKLPQDMGI-----ILQKLLYMDMSNNHFEGNIASSIAEM---KELRFLDLSKNNFSGELSA  468 (911)
Q Consensus       397 ~~~~~~L~~L~ls~n~l~~~ip~~~~~-----~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~g~i~~  468 (911)
                                          .|..+..     ....|++|++++|.+++.++..+...   .+++.+.++.+.+..    
T Consensus       190 --------------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----  245 (844)
T 3j0a_A          190 --------------------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----  245 (844)
T ss_dssp             --------------------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----
T ss_pred             --------------------cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc----
Confidence                                2222211     01247888888887777777666543   456667666544321    


Q ss_pred             HHHhcccccceeeccCcccccccCCCCCCC--CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCc
Q 043567          469 ALLTSCFSLLWLGLSDNNFYGRIFPGYMNL--TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNL  546 (911)
Q Consensus       469 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  546 (911)
                                  .+..+.+.+.....|..+  ++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+
T Consensus       246 ------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  313 (844)
T 3j0a_A          246 ------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL  313 (844)
T ss_dssp             ------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred             ------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence                        112334444444455544  789999999999999889999999999999999999999999999999


Q ss_pred             CCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeC
Q 043567          547 SYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDL  625 (911)
Q Consensus       547 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~L  625 (911)
                      ++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+++ +    ..+++|+.|++
T Consensus       314 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l  388 (844)
T 3j0a_A          314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFL  388 (844)
T ss_dssp             SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEE
T ss_pred             CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhcc
Confidence            999999999999998889999999999999999999999888877 89999999999999984 2    33789999999


Q ss_pred             CCCcccccCchhhhcCCCccEEEccCCcccccC-ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCcccccccc
Q 043567          626 RDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI-PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEH  704 (911)
Q Consensus       626 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~  704 (911)
                      ++|+++ .+|..   ..+++.|++++|++++.- +..+.++++|+.|+|++|++++..+....                 
T Consensus       389 ~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------  447 (844)
T 3j0a_A          389 SGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-----------------  447 (844)
T ss_dssp             ESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-----------------
T ss_pred             CCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-----------------
Confidence            999998 56654   568999999999998642 33456899999999999999864432110                 


Q ss_pred             chhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc-----ccCC
Q 043567          705 LTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT-----GEIP  779 (911)
Q Consensus       705 l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip  779 (911)
                                                                            ..+++|+.|++++|.++     +..|
T Consensus       448 ------------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~  473 (844)
T 3j0a_A          448 ------------------------------------------------------SENPSLEQLFLGENMLQLAWETELCW  473 (844)
T ss_dssp             ------------------------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred             ------------------------------------------------------ccCCccccccCCCCccccccccccch
Confidence                                                                  11347888999999997     5556


Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCcc
Q 043567          780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATF  859 (911)
Q Consensus       780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~  859 (911)
                      ..+..+++|++|+|++|++++.+|..++++++|+.|||++|+|++..|..+.  +.|++|||++|+++|.+|..  |..+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L  549 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL  549 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence            7789999999999999999999999999999999999999999988777776  89999999999999999965  5566


Q ss_pred             CccccCCCCCCCCCc
Q 043567          860 DESSYRGNLHLCGPT  874 (911)
Q Consensus       860 ~~~~~~gn~~lcg~~  874 (911)
                      ....+.|||..|.-+
T Consensus       550 ~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          550 SVLDITHNKFICECE  564 (844)
T ss_dssp             CEEEEEEECCCCSSS
T ss_pred             CEEEecCCCcccccc
Confidence            677788999999543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5e-50  Score=484.97  Aligned_cols=506  Identities=20%  Similarity=0.223  Sum_probs=306.2

Q ss_pred             CCCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCC-CCCCC--ccc------------cceeecCCCCcEEEEec
Q 043567           34 YKACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGG-MSSDC--CNW------------KGVRCNATTGRVIQLLL   98 (911)
Q Consensus        34 ~~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~-~~~~~--C~w------------~gv~C~~~~~~v~~l~L   98 (911)
                      .+++..+|++||++||+++.      +|     +|..+++ ...+|  |.|            .||+|+. .|||+.|+|
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~------~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L  330 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALD------GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSL  330 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT------GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred             ccccchHHHHHHHHHHHHcC------CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEEC
Confidence            34567789999999999994      33     7875410 01345  999            9999986 699999999


Q ss_pred             CCCCcccccccccccCCcccccccccccCCCCCCEEeC-CCCCCCcccCcccccccCCCCC-----Cc------EEeC-C
Q 043567           99 NDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDL-SNNSFEGVYENQAYDTLGSLKR-----LK------ILNL-G  165 (911)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~l~~-----L~------~L~L-s  165 (911)
                      ++..+  .       |    .+ +..|+.+++|++||| ++|.+.|..+-.....-..+..     ++      .++. .
T Consensus       331 s~~~L--~-------G----~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~  396 (876)
T 4ecn_A          331 AGFGA--K-------G----RV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ  396 (876)
T ss_dssp             TTTCC--E-------E----EE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCG
T ss_pred             ccCCC--C-------C----cC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCc
Confidence            99886  2       1    12 246888999999999 8888877633110000000000     00      0000 0


Q ss_pred             CCCCCccchhhh-----------cCCCCCCEEEcC--CcccCCccChhhhcCCCCCCEEeCCCCCCCC------------
Q 043567          166 YNYFDDSIFLYL-----------NALTSLTTLILR--ENNIQGSRTKQGLSKLKNLEALDLSSNFING------------  220 (911)
Q Consensus       166 ~n~l~~~~~~~l-----------~~l~~L~~L~Ls--~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~------------  220 (911)
                      ...+.+..+..+           .....++.+.+.  .|++++ +| ..+.++++|++|+|++|+++|            
T Consensus       397 ~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~  474 (876)
T 4ecn_A          397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS  474 (876)
T ss_dssp             GGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             chhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence            000000000000           111122222222  244544 44 345555555555555555554            


Q ss_pred             -----ccCccccc--CCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCc-CCc-cCcccccCCC-------CCCee
Q 043567          221 -----SLESQGIC--ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ-LSG-SFPSIISNLT-------SLEYL  284 (911)
Q Consensus       221 -----~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L  284 (911)
                           .+|.. ++  ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+++++       +|++|
T Consensus       475 n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          475 DYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             HHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             ccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence                 25553 44  77777777777777777777777777777777777776 666 6666555444       77777


Q ss_pred             eccCCcCCCccCh-hhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCC-CCEEECCCC
Q 043567          285 ALFDNNFEGTFPL-SSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFD-LKYLDLSHN  362 (911)
Q Consensus       285 ~L~~n~l~~~~p~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~-L~~L~Ls~n  362 (911)
                      ++++|.++ .+|. ..++++++|+.|++++|... .++  .+..+++|+.|++++|.+..+|..+..+++ |++|++++|
T Consensus       554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred             EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence            77777776 6663 25667777777777655543 333  566677778888888888888888888887 888888888


Q ss_pred             CCCCCCchhhhhcCC--cccEEEccCCccccccCC-C--CC--CCCCccEEEccCCcCCcCCChhHHHhccCCcEEEccc
Q 043567          363 DLDGAFPTWALQNNT--KLEVLLLTNNSFTGNLQL-P--DD--KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN  435 (911)
Q Consensus       363 ~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~-~--~~--~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  435 (911)
                      .++ .+|..+. ..+  +|+.|++++|++.+..+. +  ..  ..++|+.|++++|.++ .+|..++..+++|++|++++
T Consensus       630 ~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          630 KLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred             CCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence            887 6775432 333  377788888777764321 1  11  3346777777777776 66766665567777777777


Q ss_pred             Cccccccchhhhc--------CCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCC--CCCCCCEEE
Q 043567          436 NHFEGNIASSIAE--------MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYM--NLTQLQYLY  505 (911)
Q Consensus       436 n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~  505 (911)
                      |+++ .+|..+..        +++|++|+|++|+++ .+|.                         .+.  .+++|+.|+
T Consensus       707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~-------------------------~l~~~~l~~L~~L~  759 (876)
T 4ecn_A          707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD-------------------------DFRATTLPYLSNMD  759 (876)
T ss_dssp             CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG-------------------------GGSTTTCTTCCEEE
T ss_pred             CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH-------------------------HhhhccCCCcCEEE
Confidence            7766 44443322        125555555555554 4444                         333  455555555


Q ss_pred             ccCccccccccccccCCCCCcEEECcC------CcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEcc
Q 043567          506 LENNKFSGKIEEGLLKSKKLVELRMSS------NMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS  579 (911)
Q Consensus       506 L~~n~l~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls  579 (911)
                      |++|++++ +|..+..+++|+.|+|++      |++.+.+|..+.++++|+.|++++|++ +.+|..+.  ++|+.|+++
T Consensus       760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs  835 (876)
T 4ecn_A          760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIA  835 (876)
T ss_dssp             CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECC
T ss_pred             eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECC
Confidence            55555554 455555556666665544      667777777777777777777777777 57777654  477777777


Q ss_pred             CcccccccCccc-ccccccEEEcccCcc
Q 043567          580 ENYLSGFMTTSF-NISSVEHLYLQKNSL  606 (911)
Q Consensus       580 ~n~l~~~~~~~~-~~~~L~~L~Ls~n~l  606 (911)
                      +|++....+..+ ....+..+.+.+|+.
T Consensus       836 ~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          836 DNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             SCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCCCCccChHHccccccchheeecCCCc
Confidence            777665554444 333344444555444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-47  Score=455.30  Aligned_cols=493  Identities=21%  Similarity=0.234  Sum_probs=343.7

Q ss_pred             CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567          206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA  285 (911)
Q Consensus       206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  285 (911)
                      +++++|++++|.++ .++...|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            34556666666655 33333455566666666666655555455555555666666665555555455555555555555


Q ss_pred             ccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCCh-hhhccCCCCEEECCCCCC
Q 043567          286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP-FLLHQFDLKYLDLSHNDL  364 (911)
Q Consensus       286 L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l  364 (911)
                      +++|.++                                                  .++. .+..+++|++|++++|.+
T Consensus       107 L~~n~l~--------------------------------------------------~l~~~~~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A          107 AVETNLA--------------------------------------------------SLENFPIGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             CTTSCCC--------------------------------------------------CSTTCSCTTCTTCCEEECCSSCC
T ss_pred             ccccccc--------------------------------------------------cCCCccccccccccEEecCCCcc
Confidence            5555544                                                  2222 244566788888888888


Q ss_pred             CC-CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCC----cEEEcccCccc
Q 043567          365 DG-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKL----LYMDMSNNHFE  439 (911)
Q Consensus       365 ~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L----~~L~Ls~n~l~  439 (911)
                      ++ .+|..+ .++++|++|++++|.+++..                        |..+. .+++|    +.+++++|.++
T Consensus       137 ~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~------------------------~~~~~-~l~~L~~~~~~L~l~~n~l~  190 (570)
T 2z63_A          137 QSFKLPEYF-SNLTNLEHLDLSSNKIQSIY------------------------CTDLR-VLHQMPLLNLSLDLSLNPMN  190 (570)
T ss_dssp             CCCCCCGGG-GGCTTCCEEECTTSCCCEEC------------------------GGGGH-HHHTCTTCCCEEECTTCCCC
T ss_pred             ceecChhhh-cccCCCCEEeCcCCccceec------------------------HHHcc-chhccchhhhhcccCCCCce
Confidence            75 356543 46677776666666665432                        22232 24444    45555555555


Q ss_pred             cccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCccc------ccccCCCCCCCC--CCCEEEccCc-c
Q 043567          440 GNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF------YGRIFPGYMNLT--QLQYLYLENN-K  510 (911)
Q Consensus       440 ~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~L~~n-~  510 (911)
                      +..|..+..+ +|++|++++|..........+..++.++...+....+      .......+..++  .++.++++++ .
T Consensus       191 ~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  269 (570)
T 2z63_A          191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY  269 (570)
T ss_dssp             EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred             ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence            4444444433 4555555555333222222233444444333322111      111111222222  3556677766 6


Q ss_pred             ccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcc
Q 043567          511 FSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS  590 (911)
Q Consensus       511 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~  590 (911)
                      +.+.+|..+..+++|++|++++|.++ .+|.++..+ +|+.|++++|.+. .+|.  ..+++|+.+++++|.+.+..+. 
T Consensus       270 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-  343 (570)
T 2z63_A          270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-  343 (570)
T ss_dssp             EESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred             hhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence            67777777888888888888888887 577777777 8888888888887 5665  4678888888888888776665 


Q ss_pred             cccccccEEEcccCcccccc--cccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-hhhhcCCC
Q 043567          591 FNISSVEHLYLQKNSLSGPI--PIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-NQICQLTG  667 (911)
Q Consensus       591 ~~~~~L~~L~Ls~n~l~~~~--p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~~l~~l~~  667 (911)
                      ..+++|++|++++|++++..  |..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..| ..+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            56888999999999988654  7788899999999999999986544 48999999999999999987766 56889999


Q ss_pred             CCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeee
Q 043567          668 LGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEF  747 (911)
Q Consensus       668 L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  747 (911)
                      |+.|++++|.+++..|..+..                                                           
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------------  443 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNG-----------------------------------------------------------  443 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTT-----------------------------------------------------------
T ss_pred             CCEEeCcCCcccccchhhhhc-----------------------------------------------------------
Confidence            999999999998777765543                                                           


Q ss_pred             eeccceeeccCCcCccccEEEcccCccc-ccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccC
Q 043567          748 VTKNRYEVYNGSNLDYMVGLDLSCNKLT-GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI  826 (911)
Q Consensus       748 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i  826 (911)
                                   +++|+.|++++|+++ +.+|..++.+++|++|+|++|++++.+|..++++++|++|++++|++++.+
T Consensus       444 -------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          444 -------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             -------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             -------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence                         347888999999998 689999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCeEeccCCcCeecCCCCCC
Q 043567          827 PPKLTELNFLSNFNVSYNNLSGLIPDKGQ  855 (911)
Q Consensus       827 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  855 (911)
                      |..+..++.|++|++++|+++|.+|....
T Consensus       511 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          511 DGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             HHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            88999999999999999999999997543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-47  Score=448.88  Aligned_cols=496  Identities=23%  Similarity=0.231  Sum_probs=352.8

Q ss_pred             CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567          129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL  208 (911)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  208 (911)
                      +++++||+++|.+++..+    .+|.++++|++|++++|.+++..+..|.++++|++|++++|++++ +++..|.++++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTC
T ss_pred             ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccc
Confidence            356666777666666554    456666666666666666666556666666666666666666653 333456666666


Q ss_pred             CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCC-CCCcccCCCCCCcEEEccCCcCCccCcccccCCCCC----Ce
Q 043567          209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED-HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL----EY  283 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~  283 (911)
                      ++|++++|.++ .++...++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|..++.+++|    ++
T Consensus       103 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             ccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            66666666665 3443346666666666666666655 246666666666666666666665555555555555    55


Q ss_pred             eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCC--CCCChhhhccCCCCEEECCC
Q 043567          284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL--NVIPPFLLHQFDLKYLDLSH  361 (911)
Q Consensus       284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~ip~~l~~~~~L~~L~Ls~  361 (911)
                      |++++|.+++..| ..+... +|+.                         |++++|..  ..++..+..+..++.+.+..
T Consensus       182 L~l~~n~l~~~~~-~~~~~~-~L~~-------------------------L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  234 (570)
T 2z63_A          182 LDLSLNPMNFIQP-GAFKEI-RLHK-------------------------LTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  234 (570)
T ss_dssp             EECTTCCCCEECT-TTTTTC-EEEE-------------------------EEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred             cccCCCCceecCH-HHhccC-ccee-------------------------EecccccccccchhhhhcCccccceeeecc
Confidence            6666666553322 222222 3333                         33333322  23344444455554444432


Q ss_pred             CCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCC-cCCcCCChhHHHhccCCcEEEcccCcccc
Q 043567          362 NDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN-NFTGKLPQDMGIILQKLLYMDMSNNHFEG  440 (911)
Q Consensus       362 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~  440 (911)
                      ..+..         ...++  .+....+.+.      .--.++.++++++ .+.+.+|..+. .+++|++|++++|.++ 
T Consensus       235 ~~~~~---------~~~l~--~~~~~~~~~l------~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-  295 (570)
T 2z63_A          235 GEFRN---------EGNLE--KFDKSALEGL------CNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-  295 (570)
T ss_dssp             EECCC---------CSSCE--ECCTTTTGGG------GGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-
T ss_pred             ccccC---------chhhh--hcchhhhccc------cccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-
Confidence            22110         00000  0001111100      0113566777777 66666777665 4889999999999888 


Q ss_pred             ccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccc--ccc
Q 043567          441 NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI--EEG  518 (911)
Q Consensus       441 ~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~  518 (911)
                      .+|..+..+ +|++|++++|.+. .+|.   ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  +..
T Consensus       296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~  368 (570)
T 2z63_A          296 RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS  368 (570)
T ss_dssp             SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred             hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccc
Confidence            577778888 9999999999987 7775   3788899999999988776655  67899999999999998654  677


Q ss_pred             ccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccc-hhhccCCCCcEEEccCcccccccCccc-ccccc
Q 043567          519 LLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHRRLQLFSVSENYLSGFMTTSF-NISSV  596 (911)
Q Consensus       519 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L  596 (911)
                      +..+++|++|++++|++.+..+. +..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+ .+++|
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  447 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  447 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence            88899999999999999865444 8899999999999999987766 568889999999999999999888887 89999


Q ss_pred             cEEEcccCccc-ccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCC
Q 043567          597 EHLYLQKNSLS-GPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH  675 (911)
Q Consensus       597 ~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~  675 (911)
                      ++|++++|+++ +.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..|..+.++++|+.|++++
T Consensus       448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence            99999999998 67899999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CcCCCCCCc
Q 043567          676 NKFNGSIPS  684 (911)
Q Consensus       676 N~l~g~ip~  684 (911)
                      |++++..|.
T Consensus       528 N~~~~~~~~  536 (570)
T 2z63_A          528 NPWDCSCPR  536 (570)
T ss_dssp             SCBCCCTTT
T ss_pred             CcccCCCcc
Confidence            999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.6e-47  Score=444.68  Aligned_cols=485  Identities=18%  Similarity=0.151  Sum_probs=339.4

Q ss_pred             EeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCc
Q 043567          211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN  290 (911)
Q Consensus       211 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  290 (911)
                      .|.+++.++ .+|.. +.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|.
T Consensus        10 c~~~~~~l~-~ip~~-~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFT-SIPSG-LT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCS-SCCSC-CC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCccc-ccccc-CC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            455555554 44442 21  456666666666665555556666666666666666665555556666666666666665


Q ss_pred             CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC-CCc
Q 043567          291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG-AFP  369 (911)
Q Consensus       291 l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~-~~p  369 (911)
                      +++..| ..++                                                .+++|++|++++|.+++ .+|
T Consensus        86 l~~~~~-~~~~------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~  116 (549)
T 2z81_A           86 LSSLSS-SWFG------------------------------------------------PLSSLKYLNLMGNPYQTLGVT  116 (549)
T ss_dssp             CCSCCH-HHHT------------------------------------------------TCTTCCEEECTTCCCSSSCSS
T ss_pred             cCccCH-HHhc------------------------------------------------cCCCCcEEECCCCcccccchh
Confidence            553222 2222                                                22334444444444442 122


Q ss_pred             hhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcC
Q 043567          370 TWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM  449 (911)
Q Consensus       370 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  449 (911)
                      . .+.++++|++|+++                        +|.+.+.+|...+..+++|++|++++|.+++.+|..++.+
T Consensus       117 ~-~~~~l~~L~~L~L~------------------------~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          117 S-LFPNLTNLQTLRIG------------------------NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             C-SCTTCTTCCEEEEE------------------------ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             h-hhhccCCccEEECC------------------------CCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            2 12344455555554                        4443334443222346777777777777777777777777


Q ss_pred             CCCcEEeccCcccCCcccHHHHhcccccceeeccCccccccc--C-CCCCCCCCCCEEEccCccccccccc----cccCC
Q 043567          450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRI--F-PGYMNLTQLQYLYLENNKFSGKIEE----GLLKS  522 (911)
Q Consensus       450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l  522 (911)
                      ++|++|+++.|.+. .+|..++..+++|++|++++|.+++..  + .....+++|+.|++++|.+++..+.    .+..+
T Consensus       172 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (549)
T 2z81_A          172 RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI  250 (549)
T ss_dssp             SEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred             ccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence            77777777777764 666666666777888888887777642  1 2234567888888888888765443    34567


Q ss_pred             CCCcEEECcCCcCcccC------CcCccCcCCCcEEEccCcccccc-----cchhhccCCCCcEEEccCcccccccCccc
Q 043567          523 KKLVELRMSSNMLSGHI------PHWMGNLSYLEVLLMSKNFFEGN-----IPVQLLNHRRLQLFSVSENYLSGFMTTSF  591 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~~~~L~~L~ls~n~l~~~~~~~~  591 (911)
                      ++|+.+++++|.+.+..      ...+..+++|+.|++.++.+...     ++......++|+.+++++|.+...+...+
T Consensus       251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~  330 (549)
T 2z81_A          251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS  330 (549)
T ss_dssp             TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred             ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence            88899999988877531      12356678889999988876532     23334456789999999999875444443


Q ss_pred             -ccccccEEEcccCcccccccc---cccCCCCCCEEeCCCCcccccCc--hhhhcCCCccEEEccCCcccccCChhhhcC
Q 043567          592 -NISSVEHLYLQKNSLSGPIPI---ALFRSSNLLTLDLRDNGFSGVIP--HQINECSNLRFLLLRGNNLEGQIPNQICQL  665 (911)
Q Consensus       592 -~~~~L~~L~Ls~n~l~~~~p~---~l~~~~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l  665 (911)
                       .+++|++|++++|++++.+|.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence             689999999999999987754   47788999999999999986532  46889999999999999998 789899999


Q ss_pred             CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567          666 TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV  745 (911)
Q Consensus       666 ~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  745 (911)
                      ++|++|++++|++++ +|..+                                                           
T Consensus       410 ~~L~~L~Ls~N~l~~-l~~~~-----------------------------------------------------------  429 (549)
T 2z81_A          410 EKMRFLNLSSTGIRV-VKTCI-----------------------------------------------------------  429 (549)
T ss_dssp             TTCCEEECTTSCCSC-CCTTS-----------------------------------------------------------
T ss_pred             ccccEEECCCCCccc-ccchh-----------------------------------------------------------
Confidence            999999999999862 33211                                                           


Q ss_pred             eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567          746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ  825 (911)
Q Consensus       746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~  825 (911)
                                     .+.|+.||+++|++++.+    +.+++|++|+|++|+++ .+|+ .+.+++|++|||++|++++.
T Consensus       430 ---------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          430 ---------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             ---------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred             ---------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence                           136788999999999753    57899999999999998 7887 57899999999999999999


Q ss_pred             CCCCCCCCCCCCeEeccCCcCeecCCCCCCC
Q 043567          826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQF  856 (911)
Q Consensus       826 ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  856 (911)
                      +|..+..++.|++|++++|+++|.+|....+
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l  519 (549)
T 2z81_A          489 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  519 (549)
T ss_dssp             CTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             CHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence            9999999999999999999999998854333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8e-46  Score=436.80  Aligned_cols=472  Identities=18%  Similarity=0.137  Sum_probs=333.1

Q ss_pred             CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567          129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL  208 (911)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  208 (911)
                      ++|++|++++|.+++..+    ..++++++|++|++++|.+.+..|..|.++++|++|++++|++++ +++..|+++++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECS----STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccCh----hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCC
Confidence            689999999999998877    678999999999999999999888999999999999999999985 444679999999


Q ss_pred             CEEeCCCCCCCCc-cCcccccCCCCCCEEeccCCcCCCCCC-cccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeec
Q 043567          209 EALDLSSNFINGS-LESQGICELKNLFVLNLEKNNIEDHLP-NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL  286 (911)
Q Consensus       209 ~~L~Ls~n~l~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  286 (911)
                      ++|++++|.+++. ++. .++++++|++|++++|.+.+.+| ..+.++++|++|++++|++++..|..++++++|++|++
T Consensus       101 ~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             CEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             cEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            9999999999852 333 58999999999999998544444 68999999999999999999989999999999999999


Q ss_pred             cCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCCh-hhhccCCCCEEECCCCCCC
Q 043567          287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP-FLLHQFDLKYLDLSHNDLD  365 (911)
Q Consensus       287 ~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~  365 (911)
                      +.|.+. .+|...+..+++|++|++++|........                      |. ....+.+|+.|++++|.++
T Consensus       180 ~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          180 HLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS----------------------PLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             ECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC----------------------CCSSCCCCCCCCEEEEESCEEE
T ss_pred             ccCccc-ccchhhHhhcccccEEEccCCcccccccc----------------------ccchhhhhhcccceeccccccc
Confidence            999875 55544455677777777765443221000                      11 1122345666666666655


Q ss_pred             CCCchhh---hhcCCcccEEEccCCccccccCCC------CCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccC
Q 043567          366 GAFPTWA---LQNNTKLEVLLLTNNSFTGNLQLP------DDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNN  436 (911)
Q Consensus       366 ~~~p~~~---~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  436 (911)
                      +..+..+   ...+++|+.+++++|.+.+....+      ...+.+++.|++.++.+..    ..               
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~----~~---------------  297 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ----FY---------------  297 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC----GG---------------
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch----hh---------------
Confidence            4333322   124556666666666665432211      1233444444444443221    00               


Q ss_pred             ccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccC---CCCCCCCCCCEEEccCccccc
Q 043567          437 HFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIF---PGYMNLTQLQYLYLENNKFSG  513 (911)
Q Consensus       437 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~  513 (911)
                       ....++..+...++|+.|++++|++. .+|..++..+++|++|++++|.+.+.+|   ..++.+++|++|++++|++++
T Consensus       298 -~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  375 (549)
T 2z81_A          298 -LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS  375 (549)
T ss_dssp             -GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred             -hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence             00112233344566777777777765 6666665566677777777777666543   346677888888888888875


Q ss_pred             ccc--ccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc
Q 043567          514 KIE--EGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF  591 (911)
Q Consensus       514 ~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~  591 (911)
                      ..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+                        
T Consensus       376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------------------  429 (549)
T 2z81_A          376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------------------  429 (549)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS------------------------
T ss_pred             cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh------------------------
Confidence            432  45777888888888888887 57777777788888888888776 333222                        


Q ss_pred             ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567          592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM  671 (911)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L  671 (911)
                       .++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|
T Consensus       430 -~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  502 (549)
T 2z81_A          430 -PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI  502 (549)
T ss_dssp             -CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             -cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence             134555555555555432    35677888888888887 5665 4678888888888888888888888888899999


Q ss_pred             EcCCCcCCCCCC
Q 043567          672 DLSHNKFNGSIP  683 (911)
Q Consensus       672 ~Ls~N~l~g~ip  683 (911)
                      ++++|++++..|
T Consensus       503 ~l~~N~~~~~~~  514 (549)
T 2z81_A          503 WLHTNPWDCSCP  514 (549)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EecCCCccCCCc
Confidence            999998887776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-47  Score=456.86  Aligned_cols=327  Identities=21%  Similarity=0.307  Sum_probs=239.1

Q ss_pred             cchhhh--cCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcc-ccc-ccCCCCCCC------CCCCEEEccCccc
Q 043567          442 IASSIA--EMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-FYG-RIFPGYMNL------TQLQYLYLENNKF  511 (911)
Q Consensus       442 ~p~~l~--~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l  511 (911)
                      +|..++  ++++|++|++++|++.|.+|..+ ..+++|++|++++|. +++ .+|..++++      ++|++|++++|++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            444444  44444444444444444444332 344444444444444 444 444433333      6777777777777


Q ss_pred             cccccc--cccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCC-CcEEEccCcccccccC
Q 043567          512 SGKIEE--GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR-LQLFSVSENYLSGFMT  588 (911)
Q Consensus       512 ~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~ls~n~l~~~~~  588 (911)
                      + .+|.  .+..+++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence            7 6776  77777888888888888877777 7777888888888888877 77777888877 888888888877 455


Q ss_pred             ccc-c--cccccEEEcccCccccccccccc-------CCCCCCEEeCCCCcccccCchh-hhcCCCccEEEccCCccccc
Q 043567          589 TSF-N--ISSVEHLYLQKNSLSGPIPIALF-------RSSNLLTLDLRDNGFSGVIPHQ-INECSNLRFLLLRGNNLEGQ  657 (911)
Q Consensus       589 ~~~-~--~~~L~~L~Ls~n~l~~~~p~~l~-------~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~  657 (911)
                      ..+ .  +++|++|++++|++++.+|..+.       .+++|++|++++|+++ .+|.. +..+++|++|+|++|+++ .
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~  471 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-E  471 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-C
Confidence            554 2  34788888888888888888777       7778999999999998 45544 556889999999999988 6


Q ss_pred             CChhhhcC--------CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567          658 IPNQICQL--------TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL  729 (911)
Q Consensus       658 ip~~l~~l--------~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l  729 (911)
                      +|..+...        ++|+.|+|++|+++ .+|..+..                                         
T Consensus       472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-----------------------------------------  509 (636)
T 4eco_A          472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-----------------------------------------  509 (636)
T ss_dssp             CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------
T ss_pred             cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------
Confidence            66654432        28999999999888 56654430                                         


Q ss_pred             CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEEC------CCCcCCcccc
Q 043567          730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNM------SHNFLSESIP  803 (911)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~L------s~N~l~g~ip  803 (911)
                                                   ..+++|+.|||++|++++ +|..++.+++|++|+|      ++|++.+.+|
T Consensus       510 -----------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          510 -----------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             -----------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             -----------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence                                         013467889999999997 8999999999999999      5678889999


Q ss_pred             ccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecC
Q 043567          804 ESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLI  850 (911)
Q Consensus       804 ~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  850 (911)
                      ..++++++|+.|||++|++ +.||..+.  +.|++||+++|++...-
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             HHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            9999999999999999999 78888876  78999999999877543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.1e-44  Score=428.66  Aligned_cols=521  Identities=22%  Similarity=0.213  Sum_probs=295.3

Q ss_pred             CcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEec
Q 043567          159 LKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNL  238 (911)
Q Consensus       159 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  238 (911)
                      +++|||++|.|++..+..|.++++|++|+|++|+|+ .+++.+|.++++|++|+|++|+++ .+|...|.++++|++|+|
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence            344444444444333344444444444444444444 222244555555555555555554 344444555555555555


Q ss_pred             cCCcCCCCCCcccCCCCCCcEEEccCCcCCc-cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcc
Q 043567          239 EKNNIEDHLPNCLNNMTRLKVLDISFNQLSG-SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNM  317 (911)
Q Consensus       239 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~  317 (911)
                      ++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+ ..+..+.+++.         
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~---------  201 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPL---------  201 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTT---------
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhh---------
Confidence            5555555444455566666666666666543 245555666666666666666653332 33443333321         


Q ss_pred             ccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCC
Q 043567          318 LQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD  397 (911)
Q Consensus       318 ~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~  397 (911)
                                  ....++++.|.+..++........++.+++.+|.....++...+..+..++...+..+......    
T Consensus       202 ------------~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~----  265 (635)
T 4g8a_A          202 ------------LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG----  265 (635)
T ss_dssp             ------------CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred             ------------hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc----
Confidence                        1223445555555555555555556666666665544444444545555555544333222110    


Q ss_pred             CCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccc---ccchhhhcCCCCcEEeccCcccCCcccHHHHhcc
Q 043567          398 DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG---NIASSIAEMKELRFLDLSKNNFSGELSAALLTSC  474 (911)
Q Consensus       398 ~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~  474 (911)
                                    .+.......+ .....+...++..+....   .++..+..+.                        
T Consensus       266 --------------~l~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~------------------------  306 (635)
T 4g8a_A          266 --------------NLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT------------------------  306 (635)
T ss_dssp             --------------CCSCCCTTTT-GGGGGSEEEEEEEECCCSCEEECTTTTGGGT------------------------
T ss_pred             --------------cccccccccc-ccccchhhhhhhhhhhcccccchhhhhhhhc------------------------
Confidence                          0000000000 112233333332221110   1111122222                        


Q ss_pred             cccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEc
Q 043567          475 FSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLM  554 (911)
Q Consensus       475 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  554 (911)
                       +++.+.+..+.+....  .+.....|+.|++.+|.+.+..+   ..+..|+.+++..|.+...  .....+++|+.+++
T Consensus       307 -~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l  378 (635)
T 4g8a_A          307 -NVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL  378 (635)
T ss_dssp             -TCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred             -cccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchh
Confidence             3333333333322211  12233455666666665543322   1234455555555554422  12234455555555


Q ss_pred             cCcccc--cccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc
Q 043567          555 SKNFFE--GNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG  632 (911)
Q Consensus       555 ~~n~l~--~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~  632 (911)
                      ++|.+.  +..+....                       .+.+|+.+++..|...+ ++..+..+++|+.+++++|+...
T Consensus       379 s~n~l~~~~~~~~~~~-----------------------~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~  434 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDF-----------------------GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ  434 (635)
T ss_dssp             CSSCCBEEEECCHHHH-----------------------SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred             hccccccccccccchh-----------------------hhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence            555443  12233333                       44555555555555542 34456667778888887777665


Q ss_pred             cCc-hhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC-CCCcccccccccccCCccccccccchhhhh
Q 043567          633 VIP-HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVER  710 (911)
Q Consensus       633 ~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~  710 (911)
                      ..+ ..+..+++++.++++.|.+.+..|..+..++.|+.|+|++|++.+ .+|..+..                      
T Consensus       435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------------------  492 (635)
T 4g8a_A          435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------  492 (635)
T ss_dssp             TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh----------------------
Confidence            544 346778888888888888888888888888888888888887543 33433322                      


Q ss_pred             ccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCE
Q 043567          711 LDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPV  790 (911)
Q Consensus       711 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~  790 (911)
                                                                        +++|+.|||++|++++.+|..|+++++|++
T Consensus       493 --------------------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          493 --------------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             --------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence                                                              346788999999999999999999999999


Q ss_pred             EECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCC-CCCCeEeccCCcCeecC
Q 043567          791 LNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTEL-NFLSNFNVSYNNLSGLI  850 (911)
Q Consensus       791 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~i  850 (911)
                      |+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|+|++|+++..-
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            9999999999999999999999999999999999999999988 68999999999998754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=430.29  Aligned_cols=457  Identities=19%  Similarity=0.228  Sum_probs=307.3

Q ss_pred             CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccC
Q 043567          209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD  288 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  288 (911)
                      ++||+++|.++ .+|.. +.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            35666666666 55543 32  6677777777777766666677777777777777777766666777777777777777


Q ss_pred             CcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC-C
Q 043567          289 NNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG-A  367 (911)
Q Consensus       289 n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~-~  367 (911)
                      |.++ .+|.                                                 .  .+++|++|++++|.+++ .
T Consensus        79 N~l~-~lp~-------------------------------------------------~--~l~~L~~L~L~~N~l~~~~  106 (520)
T 2z7x_B           79 NKLV-KISC-------------------------------------------------H--PTVNLKHLDLSFNAFDALP  106 (520)
T ss_dssp             SCCC-EEEC-------------------------------------------------C--CCCCCSEEECCSSCCSSCC
T ss_pred             Ccee-ecCc-------------------------------------------------c--ccCCccEEeccCCcccccc
Confidence            7665 3331                                                 1  23456667777777765 3


Q ss_pred             CchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCC--cEEEcccCcc--ccccc
Q 043567          368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKL--LYMDMSNNHF--EGNIA  443 (911)
Q Consensus       368 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L--~~L~Ls~n~l--~~~~p  443 (911)
                      +|.. +.++++|++|++++|.+++.   .+..                         +++|  ++|++++|.+  .+..|
T Consensus       107 ~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~-------------------------l~~L~L~~L~l~~n~l~~~~~~~  157 (520)
T 2z7x_B          107 ICKE-FGNMSQLKFLGLSTTHLEKS---SVLP-------------------------IAHLNISKVLLVLGETYGEKEDP  157 (520)
T ss_dssp             CCGG-GGGCTTCCEEEEEESSCCGG---GGGG-------------------------GTTSCEEEEEEEECTTTTSSCCT
T ss_pred             chhh-hccCCcceEEEecCcccchh---hccc-------------------------cccceeeEEEeeccccccccccc
Confidence            4543 34677777777777766531   1222                         3444  5555555555  44555


Q ss_pred             hhhhcCC-CCcEEeccCcccCCcccHHHHhcccccceeeccCcc-------cccccCCCCCCCCCCCEEEccCccccccc
Q 043567          444 SSIAEMK-ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-------FYGRIFPGYMNLTQLQYLYLENNKFSGKI  515 (911)
Q Consensus       444 ~~l~~l~-~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  515 (911)
                      ..+..+. +...+++++|++.+.++...+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+++..
T Consensus       158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~  236 (520)
T 2z7x_B          158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNS  236 (520)
T ss_dssp             TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHH
T ss_pred             ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHH
Confidence            5554443 233445566666655555545556666666666654       444444 5666777777777777666533


Q ss_pred             ccccc---CCCCCcEEECcCCcCcccCCcCc-----cCcCCCcEEEccCcccccccc-hhhccCCCCcEEEccCcccccc
Q 043567          516 EEGLL---KSKKLVELRMSSNMLSGHIPHWM-----GNLSYLEVLLMSKNFFEGNIP-VQLLNHRRLQLFSVSENYLSGF  586 (911)
Q Consensus       516 p~~l~---~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~ls~n~l~~~  586 (911)
                      +..+.   ..++|++|++++|+++|.+|..+     +.+++|+.+++++|.+  .+| ..+..+                
T Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~----------------  298 (520)
T 2z7x_B          237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI----------------  298 (520)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH----------------
T ss_pred             HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc----------------
Confidence            22211   13467777777777776666666     5666666666666655  344 222222                


Q ss_pred             cCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc--cCChhhhc
Q 043567          587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG--QIPNQICQ  664 (911)
Q Consensus       587 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~l~~  664 (911)
                          +...+|+.|++++|.+.+..  ....+++|++|++++|++++.+|.+++.+++|++|++++|++++  .+|..++.
T Consensus       299 ----~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  372 (520)
T 2z7x_B          299 ----FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ  372 (520)
T ss_dssp             ----HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred             ----cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence                01134555556665554221  12467788888888888888888888888888888998888886  56778888


Q ss_pred             CCCCCeEEcCCCcCCCCCCcc-cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccce
Q 043567          665 LTGLGMMDLSHNKFNGSIPSC-FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLV  743 (911)
Q Consensus       665 l~~L~~L~Ls~N~l~g~ip~~-~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  743 (911)
                      +++|++|++++|++++.+|.. +.                                                        
T Consensus       373 l~~L~~L~Ls~N~l~~~l~~~~~~--------------------------------------------------------  396 (520)
T 2z7x_B          373 MKSLQQLDISQNSVSYDEKKGDCS--------------------------------------------------------  396 (520)
T ss_dssp             CTTCCEEECCSSCCBCCGGGCSCC--------------------------------------------------------
T ss_pred             CCCCCEEECCCCcCCcccccchhc--------------------------------------------------------
Confidence            999999999999988766643 11                                                        


Q ss_pred             eeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCc
Q 043567          744 EVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS  823 (911)
Q Consensus       744 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~  823 (911)
                                      .++.|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++||+++|+++
T Consensus       397 ----------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          397 ----------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             ----------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ----------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence                            134678899999999988888775  78999999999998 88988889999999999999999


Q ss_pred             ccCCCC-CCCCCCCCeEeccCCcCeecCC
Q 043567          824 GQIPPK-LTELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       824 g~ip~~-l~~l~~L~~L~ls~N~l~g~iP  851 (911)
                       .+|.. +..++.|++|++++|++++..|
T Consensus       458 -~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          458 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCHHHhccCCcccEEECcCCCCcccCC
Confidence             56665 8999999999999999998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.7e-45  Score=427.06  Aligned_cols=459  Identities=22%  Similarity=0.240  Sum_probs=327.7

Q ss_pred             CEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEE
Q 043567          132 QSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL  211 (911)
Q Consensus       132 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  211 (911)
                      ++||+++|.++.. |    ..+.  ++|++|++++|.+.+..|..|.++++|++|+|++|++++..| ..|.++++|++|
T Consensus         3 ~~l~ls~n~l~~i-p----~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHV-P----KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSC-C----CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEE
T ss_pred             ceEecCCCCcccc-c----cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEE
Confidence            5788888888854 4    2333  788888888888888888888888888888888888875444 678888888888


Q ss_pred             eCCCCCCCCccCcccccCCCCCCEEeccCCcCCC-CCCcccCCCCCCcEEEccCCcCCccCcccccCCCCC--CeeeccC
Q 043567          212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIED-HLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL--EYLALFD  288 (911)
Q Consensus       212 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~  288 (911)
                      +|++|+++ .+|..   .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++
T Consensus        75 ~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           75 DLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             ECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             ecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            88888887 66653   78888888888888877 367788888888888888888775   345666666  8888888


Q ss_pred             CcC--CCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC
Q 043567          289 NNF--EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG  366 (911)
Q Consensus       289 n~l--~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~  366 (911)
                      |.+  .+..| ..+..+..                                               +...+++++|.+.+
T Consensus       148 n~l~~~~~~~-~~l~~l~~-----------------------------------------------~~l~l~l~~n~~~~  179 (520)
T 2z7x_B          148 GETYGEKEDP-EGLQDFNT-----------------------------------------------ESLHIVFPTNKEFH  179 (520)
T ss_dssp             CTTTTSSCCT-TTTTTCCE-----------------------------------------------EEEEEECCSSSCCC
T ss_pred             cccccccccc-cccccccc-----------------------------------------------ceEEEEeccCcchh
Confidence            777  54444 22222221                                               12234566666666


Q ss_pred             CCchhhhhcCCcccEEEccCCc-------cccccCCCCCCCCCccEEEccCCcCCcCCChhHHH--hccCCcEEEcccCc
Q 043567          367 AFPTWALQNNTKLEVLLLTNNS-------FTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGI--ILQKLLYMDMSNNH  437 (911)
Q Consensus       367 ~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~Ls~n~  437 (911)
                      .++...+.++++|+.+++++|.       +.+..+ .+..+++|++|++++|.+++..+..+..  ..++|++|++++|+
T Consensus       180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (520)
T 2z7x_B          180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK  258 (520)
T ss_dssp             CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred             hhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence            6666556667777777777765       333322 3345666777777777665433333221  13577888888888


Q ss_pred             cccccchhh-----hcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCcccc
Q 043567          438 FEGNIASSI-----AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS  512 (911)
Q Consensus       438 l~~~~p~~l-----~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  512 (911)
                      ++|.+|..+     +.+++|+.+++++|.+  .+|...+..+                     ....+|+.|++++|.+.
T Consensus       259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~  315 (520)
T 2z7x_B          259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMV  315 (520)
T ss_dssp             EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------HHTCCCSEEEEESSCCC
T ss_pred             ccCccccchhhcccccCceeEeccccccce--ecchhhhhcc---------------------cccCceeEEEcCCCccc
Confidence            877777777     7777777777777777  5552222222                     00134555555555554


Q ss_pred             ccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEccCcccccccCcc
Q 043567          513 GKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENYLSGFMTTS  590 (911)
Q Consensus       513 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~n~l~~~~~~~  590 (911)
                      ...  ....+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|..
T Consensus       316 ~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          316 HML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             ccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence            221  11456677777777777777777777777778888888887775  56677788888888888888888755543


Q ss_pred             -c-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh-hhcCCC
Q 043567          591 -F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ-ICQLTG  667 (911)
Q Consensus       591 -~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~-l~~l~~  667 (911)
                       + .+++|++|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  469 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS  469 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence             4 678899999999999888877665  78999999999999 78988889999999999999999 56665 889999


Q ss_pred             CCeEEcCCCcCCCCCC
Q 043567          668 LGMMDLSHNKFNGSIP  683 (911)
Q Consensus       668 L~~L~Ls~N~l~g~ip  683 (911)
                      |+.|++++|++++..+
T Consensus       470 L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             ccEEECcCCCCcccCC
Confidence            9999999999987655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.8e-44  Score=434.76  Aligned_cols=439  Identities=18%  Similarity=0.221  Sum_probs=336.9

Q ss_pred             CCceEEECCCCCC-CCCChhhhccCCCCEEEC-CCCCCCCCCchhhhhc---CCcc--cEEEc----------cCCccc-
Q 043567          329 FQLKVLRLPNCSL-NVIPPFLLHQFDLKYLDL-SHNDLDGAFPTWALQN---NTKL--EVLLL----------TNNSFT-  390 (911)
Q Consensus       329 ~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~~---l~~L--~~L~L----------~~n~l~-  390 (911)
                      ..++.|+|+++.+ +.+|+.+++++.|++|+| ++|.++|..|......   ++..  +.+..          ....+. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            3577777777777 567777777777777777 6666655433210000   0000  00000          000000 


Q ss_pred             ----------cccCCCCCCCCCccEEEccC--CcCCcCCChhHHHhccCCcEEEcccCcccc-----------------c
Q 043567          391 ----------GNLQLPDDKHDFLHHLDISS--NNFTGKLPQDMGIILQKLLYMDMSNNHFEG-----------------N  441 (911)
Q Consensus       391 ----------~~~~~~~~~~~~L~~L~ls~--n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~-----------------~  441 (911)
                                ............++.+.+..  |.+++ +|..++. +++|++|++++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                      00001111222334444443  77876 8887764 8889999999988888                 3


Q ss_pred             cchhhh--cCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcc-ccc-ccCCCCCC-------CCCCCEEEccCcc
Q 043567          442 IASSIA--EMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-FYG-RIFPGYMN-------LTQLQYLYLENNK  510 (911)
Q Consensus       442 ~p~~l~--~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~  510 (911)
                      +|..++  ++++|++|+|++|++.+.+|.. +..+++|+.|++++|+ +++ .+|..+++       +++|++|++++|+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            788876  8899999999999888888865 4688899999999997 887 67765544       4599999999999


Q ss_pred             ccccccc--cccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCC-CcEEEccCccccccc
Q 043567          511 FSGKIEE--GLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRR-LQLFSVSENYLSGFM  587 (911)
Q Consensus       511 l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~ls~n~l~~~~  587 (911)
                      ++ .+|.  .+..+++|++|++++|+++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            99 8888  8999999999999999999 888 8999999999999999999 89999999999 999999999998 56


Q ss_pred             Cccc-cc--ccccEEEcccCccccccccc---cc--CCCCCCEEeCCCCcccccCchhh-hcCCCccEEEccCCcccccC
Q 043567          588 TTSF-NI--SSVEHLYLQKNSLSGPIPIA---LF--RSSNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGNNLEGQI  658 (911)
Q Consensus       588 ~~~~-~~--~~L~~L~Ls~n~l~~~~p~~---l~--~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~i  658 (911)
                      |..+ ..  ++|+.|++++|++++.+|..   +.  .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            6665 33  45999999999999876632   22  3458999999999999 567665 58999999999999999 77


Q ss_pred             ChhhhcCC--------CCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCC
Q 043567          659 PNQICQLT--------GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLS  730 (911)
Q Consensus       659 p~~l~~l~--------~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~  730 (911)
                      |..+....        +|+.|+|++|+++ .+|..+..                                          
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------  749 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------  749 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence            77665433        8999999999998 67765430                                          


Q ss_pred             CCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCC------CcCCccccc
Q 043567          731 SEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSH------NFLSESIPE  804 (911)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~------N~l~g~ip~  804 (911)
                                                  ..+++|+.|||++|++++ +|..++.+++|+.|+|++      |++++.+|.
T Consensus       750 ----------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          750 ----------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             ----------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             ----------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence                                        123578889999999997 899999999999999977      889999999


Q ss_pred             cccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567          805 SFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       805 ~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  852 (911)
                      .++++++|+.|+|++|++ +.||..+.  +.|+.|||++|++...-+.
T Consensus       801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred             HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence            999999999999999999 89999876  6999999999999876543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8e-42  Score=410.23  Aligned_cols=512  Identities=21%  Similarity=0.194  Sum_probs=359.7

Q ss_pred             CCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCC
Q 043567          129 EELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNL  208 (911)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  208 (911)
                      +++++|||++|.|++..+    .+|.++++|++|||++|.|++..+.+|.++++|++|+|++|+++ .+|...|.++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence            479999999999999877    78999999999999999999888889999999999999999998 5666789999999


Q ss_pred             CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCCcEEEccCCcCCccCcccccCCCCCC----e
Q 043567          209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLE----Y  283 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~  283 (911)
                      ++|+|++|+++ .++...|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+..+..+.+++    .
T Consensus       127 ~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          127 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             CEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            99999999998 56666799999999999999999874 678899999999999999999988888887665544    6


Q ss_pred             eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-------CCChhhhccCCCCE
Q 043567          284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-------VIPPFLLHQFDLKY  356 (911)
Q Consensus       284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~ip~~l~~~~~L~~  356 (911)
                      ++++.|.+.. ++...+ ....++.+++..+..........+..+..++...+..+...       .....+.....+..
T Consensus       206 ~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~  283 (635)
T 4g8a_A          206 LDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI  283 (635)
T ss_dssp             EECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred             hhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence            7888898874 443333 33455667776554443333334444444444443222110       01111222222333


Q ss_pred             EECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccC
Q 043567          357 LDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNN  436 (911)
Q Consensus       357 L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  436 (911)
                      .++..+......                      ............++.+++.++.+.+ ++...  ....++.|++.+|
T Consensus       284 ~~l~~~~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~--~~~~L~~L~l~~~  338 (635)
T 4g8a_A          284 EEFRLAYLDYYL----------------------DGIIDLFNCLTNVSSFSLVSVTIER-VKDFS--YNFGWQHLELVNC  338 (635)
T ss_dssp             EEEEEECCCSCE----------------------EECTTTTGGGTTCSEEEEESCEEEE-CGGGG--SCCCCSEEEEESC
T ss_pred             hhhhhhhhcccc----------------------cchhhhhhhhccccccccccccccc-ccccc--cchhhhhhhcccc
Confidence            332222111000                      0001112234445555555554432 22211  1445556666665


Q ss_pred             ccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccc--cCCCCCCCCCCCEEEccCcccccc
Q 043567          437 HFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGR--IFPGYMNLTQLQYLYLENNKFSGK  514 (911)
Q Consensus       437 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~  514 (911)
                      .+.+..+.   .++.|+.+++..|......+   ...+++|+.++++.|.+...  .+..+..+.+|+.+++..+.+.. 
T Consensus       339 ~~~~~~~~---~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-  411 (635)
T 4g8a_A          339 KFGQFPTL---KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-  411 (635)
T ss_dssp             EESSCCCC---BCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred             cccCcCcc---cchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence            55433322   34455555555555442221   12455666666666655432  23334456677777777777663 


Q ss_pred             ccccccCCCCCcEEECcCCcCcccCC-cCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc-cccCccc-
Q 043567          515 IEEGLLKSKKLVELRMSSNMLSGHIP-HWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS-GFMTTSF-  591 (911)
Q Consensus       515 ~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~-~~~~~~~-  591 (911)
                      .+..+..+++|+.++++.++.....+ ..+..+++++.++++.|.+.+..+..+..++.+++|++++|.+. +.+|..+ 
T Consensus       412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~  491 (635)
T 4g8a_A          412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  491 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence            44556677788888887777665443 45677788888888888888777877888888888888888744 4556666 


Q ss_pred             ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcC-CCCCe
Q 043567          592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL-TGLGM  670 (911)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l-~~L~~  670 (911)
                      .+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+ ++|++
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence            78889999999999998888899999999999999999998888899999999999999999999999999888 68999


Q ss_pred             EEcCCCcCCC
Q 043567          671 MDLSHNKFNG  680 (911)
Q Consensus       671 L~Ls~N~l~g  680 (911)
                      |+|++|+++.
T Consensus       572 L~L~~Np~~C  581 (635)
T 4g8a_A          572 LNLTQNDFAC  581 (635)
T ss_dssp             EECTTCCBCC
T ss_pred             EEeeCCCCcc
Confidence            9999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.3e-42  Score=405.36  Aligned_cols=462  Identities=18%  Similarity=0.197  Sum_probs=295.3

Q ss_pred             CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567          206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA  285 (911)
Q Consensus       206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  285 (911)
                      ...+++|+++|.++ .+|.. +.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus        31 ~~~~~l~ls~~~L~-~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           31 ELESMVDYSNRNLT-HVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             --CCEEECTTSCCC-SCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCCCc-cCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            34466777777766 45543 22  6677777777777766666677777777777777777766666677777777777


Q ss_pred             ccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567          286 LFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD  365 (911)
Q Consensus       286 L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~  365 (911)
                      +++|.++ .+|                                                 ..  .+++|++|++++|.++
T Consensus       107 Ls~N~l~-~lp-------------------------------------------------~~--~l~~L~~L~Ls~N~l~  134 (562)
T 3a79_B          107 VSHNRLQ-NIS-------------------------------------------------CC--PMASLRHLDLSFNDFD  134 (562)
T ss_dssp             CTTSCCC-EEC-------------------------------------------------SC--CCTTCSEEECCSSCCS
T ss_pred             CCCCcCC-ccC-------------------------------------------------cc--ccccCCEEECCCCCcc
Confidence            7777665 344                                                 11  3345667777777776


Q ss_pred             C-CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCc--cEEEccCCcC--CcCCChhHHHhccCCcEEEcccCcccc
Q 043567          366 G-AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFL--HHLDISSNNF--TGKLPQDMGIILQKLLYMDMSNNHFEG  440 (911)
Q Consensus       366 ~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~ls~n~l--~~~ip~~~~~~l~~L~~L~Ls~n~l~~  440 (911)
                      + .+|. .+.++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|                      
T Consensus       135 ~l~~p~-~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~----------------------  188 (562)
T 3a79_B          135 VLPVCK-EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET----------------------  188 (562)
T ss_dssp             BCCCCG-GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC----------------------
T ss_pred             ccCchH-hhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc----------------------
Confidence            4 2333 345778888888888777642   22233333  5555555555  44444                      


Q ss_pred             ccchhhhcCC-CCcEEeccCcccCCcccHHHHhcccccceeeccCcc-----cccccCCCCCCCCCCCEEEccCcccccc
Q 043567          441 NIASSIAEMK-ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN-----FYGRIFPGYMNLTQLQYLYLENNKFSGK  514 (911)
Q Consensus       441 ~~p~~l~~l~-~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~  514 (911)
                         ..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|.     +.+. ...+..+++|+.+++.++.+++.
T Consensus       189 ---~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          189 ---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             ---CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHH
T ss_pred             ---ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHH
Confidence               3333322 011234444444444443333344444444444442     1111 12234455666666665554432


Q ss_pred             c----cccccCCCCCcEEECcCCcCcccCCcCc-----cCcCCCcEEEccCcccccccch-hhccCCCCcEEEccCcccc
Q 043567          515 I----EEGLLKSKKLVELRMSSNMLSGHIPHWM-----GNLSYLEVLLMSKNFFEGNIPV-QLLNHRRLQLFSVSENYLS  584 (911)
Q Consensus       515 ~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~ls~n~l~  584 (911)
                      .    +..+ ..++|++|++++|+++|.+|..+     ..++.|+.+++..+.+  .+|. .+...              
T Consensus       265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~--------------  327 (562)
T 3a79_B          265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV--------------  327 (562)
T ss_dssp             HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH--------------
T ss_pred             HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh--------------
Confidence            1    1111 22366666666666666666655     4444444444444444  2331 11110              


Q ss_pred             cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc--cCChhh
Q 043567          585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG--QIPNQI  662 (911)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~l  662 (911)
                            +...+|++|++++|.+....  ....+++|++|++++|++++.+|..++++++|++|++++|++++  .+|..+
T Consensus       328 ------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          328 ------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             ------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred             ------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence                  01245666666666664221  12567889999999999998888889999999999999999986  345678


Q ss_pred             hcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccc
Q 043567          663 CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL  742 (911)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  742 (911)
                      ..+++|+.|++++|++++.+|....                                                       
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~-------------------------------------------------------  424 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTC-------------------------------------------------------  424 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCC-------------------------------------------------------
T ss_pred             cCCCCCCEEECCCCcCCCccChhhh-------------------------------------------------------
Confidence            8899999999999999876665311                                                       


Q ss_pred             eeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcC
Q 043567          743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL  822 (911)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l  822 (911)
                                      ..++.|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|||++|++
T Consensus       425 ----------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          425 ----------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             ----------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred             ----------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence                            1134778899999999998888765  78999999999998 7888888999999999999999


Q ss_pred             cccCCCC-CCCCCCCCeEeccCCcCeecCCCC
Q 043567          823 SGQIPPK-LTELNFLSNFNVSYNNLSGLIPDK  853 (911)
Q Consensus       823 ~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~  853 (911)
                      + .+|.. +..++.|++|++++|++++..|..
T Consensus       486 ~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          486 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             C-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             C-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            9 56766 999999999999999999987743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-41  Score=399.74  Aligned_cols=459  Identities=21%  Similarity=0.225  Sum_probs=293.9

Q ss_pred             CCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCE
Q 043567          131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEA  210 (911)
Q Consensus       131 L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  210 (911)
                      .+++|+++|.+++.+.     .+.  ++|++|++++|.+.+..+..|.++++|++|+|++|++++..| ..|.++++|++
T Consensus        33 ~~~l~ls~~~L~~ip~-----~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~  104 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPK-----DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEY  104 (562)
T ss_dssp             CCEEECTTSCCCSCCT-----TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCE
T ss_pred             CcEEEcCCCCCccCCC-----CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCE
Confidence            3677777777776322     222  677788888888777777777777888888888887774434 56777777888


Q ss_pred             EeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCC-CCcccCCCCCCcEEEccCCcCCccCcccccCCCCC--Ceeecc
Q 043567          211 LDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDH-LPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSL--EYLALF  287 (911)
Q Consensus       211 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~  287 (911)
                      |++++|+++ .+|..   .+++|++|++++|.+++. +|..|+++++|++|++++|++++.   .+..+++|  ++|+++
T Consensus       105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            888877776 66653   677777777777777763 356777777777777777777653   33444444  777777


Q ss_pred             CCcC--CCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCC
Q 043567          288 DNNF--EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD  365 (911)
Q Consensus       288 ~n~l--~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~  365 (911)
                      +|.+  ++..| ..+..+.. +.+                                              .+++++|.+.
T Consensus       178 ~n~l~~~~~~~-~~l~~l~~-~~l----------------------------------------------~l~l~~n~~~  209 (562)
T 3a79_B          178 LVSYHIKGGET-ESLQIPNT-TVL----------------------------------------------HLVFHPNSLF  209 (562)
T ss_dssp             ESSCCCCSSSC-CEEEECCE-EEE----------------------------------------------EEEECSSSCC
T ss_pred             cccccccccCc-ccccccCc-ceE----------------------------------------------EEEecCccch
Confidence            7776  54444 22222210 111                                              2233344444


Q ss_pred             CCCchhhhhcCCcccEEEccCCcc-----ccccCCCCCCCCCccEEEccCCcCCcC----CChhHHHhccCCcEEEcccC
Q 043567          366 GAFPTWALQNNTKLEVLLLTNNSF-----TGNLQLPDDKHDFLHHLDISSNNFTGK----LPQDMGIILQKLLYMDMSNN  436 (911)
Q Consensus       366 ~~~p~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~~L~~L~ls~n~l~~~----ip~~~~~~l~~L~~L~Ls~n  436 (911)
                      +.++...+..+++|+.+++++|..     .+.. ..+..++.|+.+++.++.+.+.    ++...  ..++|++|++++|
T Consensus       210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n  286 (562)
T 3a79_B          210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNL  286 (562)
T ss_dssp             CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEE
T ss_pred             hhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEecc
Confidence            334433333444444444444421     0000 0011333444444444443321    11111  1346777777777


Q ss_pred             ccccccchhh-----hcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccc
Q 043567          437 HFEGNIASSI-----AEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF  511 (911)
Q Consensus       437 ~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  511 (911)
                      .++|.+|..+     ..++.|+.++++.+.+  .+|...+..+                     ....+|++|++++|.+
T Consensus       287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          287 TITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV---------------------FAEMNIKMLSISDTPF  343 (562)
T ss_dssp             EECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH---------------------HHTCCCSEEEEESSCC
T ss_pred             Eeeccccchhhhcccccchheehhhccccee--ecChhhhhhh---------------------hccCcceEEEccCCCc
Confidence            7777777665     5555566666666655  4453322111                     0013455666666655


Q ss_pred             cccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEccCcccccccCc
Q 043567          512 SGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENYLSGFMTT  589 (911)
Q Consensus       512 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~n~l~~~~~~  589 (911)
                      ....  ....+++|++|++++|++++.+|..++.+++|+.|++++|++++  .+|..+..+++|++|++++|.+++.+|.
T Consensus       344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred             cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence            4221  11456677777777777777677777777777777777777775  3456677778888888888888774444


Q ss_pred             c-c-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh-hhcCC
Q 043567          590 S-F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ-ICQLT  666 (911)
Q Consensus       590 ~-~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~-l~~l~  666 (911)
                      . + .+++|++|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..++
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  497 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT  497 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence            3 4 678888888888888887776664  68999999999998 78888889999999999999999 56666 88999


Q ss_pred             CCCeEEcCCCcCCCCCCc
Q 043567          667 GLGMMDLSHNKFNGSIPS  684 (911)
Q Consensus       667 ~L~~L~Ls~N~l~g~ip~  684 (911)
                      +|+.|++++|++.+..|-
T Consensus       498 ~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          498 SLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TCCCEECCSCCBCCCHHH
T ss_pred             CCCEEEecCCCcCCCcch
Confidence            999999999999877663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-40  Score=382.67  Aligned_cols=378  Identities=19%  Similarity=0.229  Sum_probs=325.9

Q ss_pred             cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567          404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS  483 (911)
Q Consensus       404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~  483 (911)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35666666666 6776 2   47899999999999988888999999999999999999888887777889999999999


Q ss_pred             CcccccccCCCCCCCCCCCEEEccCcccccccccc--ccCCCCCcEEECcCCcCcccCCcC-ccCcCCCcEEEccCcccc
Q 043567          484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEG--LLKSKKLVELRMSSNMLSGHIPHW-MGNLSYLEVLLMSKNFFE  560 (911)
Q Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~  560 (911)
                      +|.+++..|..+.++++|++|++++|++++.++..  +..+++|++|++++|++++..|.. +..+++|++|++++|.++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99999888999999999999999999998866655  888999999999999999887776 889999999999999999


Q ss_pred             cccchhhccC--CCCcEEEccCcccccccCcc---------cccccccEEEcccCcccccccccccCC---CCCCEEeCC
Q 043567          561 GNIPVQLLNH--RRLQLFSVSENYLSGFMTTS---------FNISSVEHLYLQKNSLSGPIPIALFRS---SNLLTLDLR  626 (911)
Q Consensus       561 ~~~p~~l~~~--~~L~~L~ls~n~l~~~~~~~---------~~~~~L~~L~Ls~n~l~~~~p~~l~~~---~~L~~L~Ls  626 (911)
                      +..|..+..+  .+|+.+++++|.+.+..+..         +.+++|++|++++|++++.+|..+...   ++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            8888888776  78999999999998876543         245789999999999999888877654   889999999


Q ss_pred             CCcccccC----------chhhhc--CCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccccccc
Q 043567          627 DNGFSGVI----------PHQINE--CSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV  694 (911)
Q Consensus       627 ~N~l~~~~----------p~~l~~--l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~  694 (911)
                      +|.+.+..          +..+..  .++|++|++++|.+++.+|..+..+++|+.|+|++|++++..|..+.++     
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----  322 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL-----  322 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC-----
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc-----
Confidence            98665431          222222  3689999999999999999999999999999999999997777655433     


Q ss_pred             CCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcc
Q 043567          695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKL  774 (911)
Q Consensus       695 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  774 (911)
                                                                                         +.|+.|++++|++
T Consensus       323 -------------------------------------------------------------------~~L~~L~Ls~N~l  335 (455)
T 3v47_A          323 -------------------------------------------------------------------THLLKLNLSQNFL  335 (455)
T ss_dssp             -------------------------------------------------------------------TTCCEEECCSSCC
T ss_pred             -------------------------------------------------------------------ccCCEEECCCCcc
Confidence                                                                               4688899999999


Q ss_pred             cccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCC
Q 043567          775 TGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKG  854 (911)
Q Consensus       775 ~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  854 (911)
                      ++..|..++.+++|++|+|++|++++.+|..++++++|++|||++|++++..+..+..++.|++|++++|+++|.+|...
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            98889999999999999999999999999999999999999999999998777788999999999999999999999754


Q ss_pred             CCCc
Q 043567          855 QFAT  858 (911)
Q Consensus       855 ~~~~  858 (911)
                      .+..
T Consensus       416 ~l~~  419 (455)
T 3v47_A          416 YLSR  419 (455)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.5e-40  Score=375.97  Aligned_cols=420  Identities=22%  Similarity=0.302  Sum_probs=221.4

Q ss_pred             CCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEE
Q 043567          255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL  334 (911)
Q Consensus       255 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  334 (911)
                      +.|++|++++|.+ +.+|..++++++|++|++++|.+.|.+| ..++++++|+.+++..|..            .++++|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~l~~L   76 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQAHEL   76 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HTCSEE
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cCCCEE
Confidence            4444445544444 3444445555555555555555444444 2344444444433332210            245566


Q ss_pred             ECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCC
Q 043567          335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT  414 (911)
Q Consensus       335 ~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~  414 (911)
                      ++++|.+..+|..   .++|++|++++|.+++ +|.    ..++|++|++++|.+++                       
T Consensus        77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------  125 (454)
T 1jl5_A           77 ELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-----------------------  125 (454)
T ss_dssp             ECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-----------------------
T ss_pred             EecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-----------------------
Confidence            6666666666552   2456677777776664 443    12445555555554443                       


Q ss_pred             cCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCC
Q 043567          415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG  494 (911)
Q Consensus       415 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~  494 (911)
                        +|..    .++|++|++++|++++ +| .++++++|++|++++|++++ +|.    ...+|++|++++|.+++ +| .
T Consensus       126 --l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~-l~-~  190 (454)
T 1jl5_A          126 --LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE-LP-E  190 (454)
T ss_dssp             --CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CC-C
T ss_pred             --ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc-Cc-c
Confidence              2221    1456666666666654 44 36666666666666666653 443    22466777777776665 33 5


Q ss_pred             CCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCc
Q 043567          495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ  574 (911)
Q Consensus       495 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~  574 (911)
                      ++++++|++|++++|++++ +|..   .++|++|++++|+++ .+|. ++.+++|++|++++|++++ +|..   .++|+
T Consensus       191 ~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~  260 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLE  260 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCC
T ss_pred             ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccC
Confidence            7777788888888887774 4432   257888888888877 5663 7778888888888888874 5542   36788


Q ss_pred             EEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcC-CCccEEEccCCc
Q 043567          575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINEC-SNLRFLLLRGNN  653 (911)
Q Consensus       575 ~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~  653 (911)
                      .|++++|++++. |..  .++|++|++++|++++ +|..   .++|++|++++|++++ ++    .+ ++|++|++++|+
T Consensus       261 ~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~  328 (454)
T 1jl5_A          261 ALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNK  328 (454)
T ss_dssp             EEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSC
T ss_pred             EEECCCCccccc-Ccc--cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCc
Confidence            888888888773 332  3778888888888876 2211   2578899999998885 22    23 589999999999


Q ss_pred             ccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCC
Q 043567          654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE  733 (911)
Q Consensus       654 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~  733 (911)
                      +++ +|..   +++|+.|++++|+++ .+|..                                                
T Consensus       329 l~~-lp~~---~~~L~~L~L~~N~l~-~lp~~------------------------------------------------  355 (454)
T 1jl5_A          329 LIE-LPAL---PPRLERLIASFNHLA-EVPEL------------------------------------------------  355 (454)
T ss_dssp             CSC-CCCC---CTTCCEEECCSSCCS-CCCCC------------------------------------------------
T ss_pred             ccc-cccc---CCcCCEEECCCCccc-cccch------------------------------------------------
Confidence            986 6654   588999999999887 35530                                                


Q ss_pred             CCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccc--cCCccccCCCCCCEEECCCCcCCccccccccccCC
Q 043567          734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG--EIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM  811 (911)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g--~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~  811 (911)
                                                 +++|+.||+++|++++  .+|..++.        |+.|++.|.+|..   +++
T Consensus       356 ---------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~  397 (454)
T 1jl5_A          356 ---------------------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQN  397 (454)
T ss_dssp             ---------------------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------
T ss_pred             ---------------------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCc
Confidence                                       1357789999999998  78876654        3457888888874   478


Q ss_pred             CCEEeccCCcCcc--cCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567          812 IESLDLSHNRLSG--QIPPKLTELNFLSNFNVSYNNLSGLIPDK  853 (911)
Q Consensus       812 L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  853 (911)
                      |+.||+++|+++|  .+|.+      ++.|.+++|.+.+.+|..
T Consensus       398 L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          398 LKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             --------------------------------------------
T ss_pred             CCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence            8999999999998  78865      445668899999888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.3e-39  Score=367.58  Aligned_cols=384  Identities=22%  Similarity=0.252  Sum_probs=264.3

Q ss_pred             eEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCC
Q 043567          332 KVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN  411 (911)
Q Consensus       332 ~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n  411 (911)
                      +.++.+++.+..+|. +  .++|++|++++|.+++..|. .+.++++|++|+++                        +|
T Consensus        13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~------------------------~n   64 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVE------------------------QQ   64 (455)
T ss_dssp             TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECC------------------------CC
T ss_pred             cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChh-HhccCccccEEECc------------------------CC
Confidence            345666666666665 2  24566666666666543333 23344445544444                        44


Q ss_pred             cCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHH-HHhcccccceeeccCcccccc
Q 043567          412 NFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAA-LLTSCFSLLWLGLSDNNFYGR  490 (911)
Q Consensus       412 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~-~~~~~~~L~~L~L~~n~l~~~  490 (911)
                      .+.+.++...+..+++|++|++++|.+++..|..++++++|++|++++|++++.++.. .+..+++|++|++++|.+.+.
T Consensus        65 ~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  144 (455)
T 3v47_A           65 TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI  144 (455)
T ss_dssp             STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred             cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence            4444443333334566666666666666666666666666666666666665433322 234555666666666666555


Q ss_pred             cCCC-CCCCCCCCEEEccCccccccccccccCC--CCCcEEECcCCcCcccCCcCc--------cCcCCCcEEEccCccc
Q 043567          491 IFPG-YMNLTQLQYLYLENNKFSGKIEEGLLKS--KKLVELRMSSNMLSGHIPHWM--------GNLSYLEVLLMSKNFF  559 (911)
Q Consensus       491 ~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l--------~~l~~L~~L~L~~n~l  559 (911)
                      .|.. +.++++|++|++++|++++..+..+..+  .+|+.|++++|.+.+..+.++        ..+++|++|++++|.+
T Consensus       145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred             CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence            5544 5566666666666666666666555544  567777777777765444332        3556777888888877


Q ss_pred             ccccchhhccC---CCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccC--CCCCCEEeCCCCcccccC
Q 043567          560 EGNIPVQLLNH---RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFR--SSNLLTLDLRDNGFSGVI  634 (911)
Q Consensus       560 ~~~~p~~l~~~---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~--~~~L~~L~Ls~N~l~~~~  634 (911)
                      ++..|..+...   ++|+.+++++|...+....             .+.+.+..+..+..  .++|++|++++|++++..
T Consensus       225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             cccchhhhhccccccceeeEeeccccccccccc-------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence            77777666554   6777777777765543221             11222222222222  368999999999999999


Q ss_pred             chhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccc
Q 043567          635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVN  714 (911)
Q Consensus       635 p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~  714 (911)
                      |..++.+++|++|++++|++++..|..+..+++|+.|+|++|++++..|..+..                          
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  345 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN--------------------------  345 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------
Confidence            999999999999999999999888999999999999999999997665655443                          


Q ss_pred             ccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECC
Q 043567          715 SIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS  794 (911)
Q Consensus       715 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls  794 (911)
                                                                    ++.|+.||+++|++++.+|..++.+++|++|+|+
T Consensus       346 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          346 ----------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             ----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ----------------------------------------------cccCCEEECCCCcccccChhhccccccccEEECC
Confidence                                                          3478889999999999999999999999999999


Q ss_pred             CCcCCccccccccccCCCCEEeccCCcCcccCCC
Q 043567          795 HNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP  828 (911)
Q Consensus       795 ~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~  828 (911)
                      +|++++..+..++.+++|+.|++++|++++.+|.
T Consensus       380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999987778889999999999999999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.9e-39  Score=367.30  Aligned_cols=390  Identities=21%  Similarity=0.263  Sum_probs=182.5

Q ss_pred             CCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEc
Q 043567          329 FQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDI  408 (911)
Q Consensus       329 ~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  408 (911)
                      ..|++|++++|.++.+|+.++++++|++|++++|.+.|.+|..+. ++++|+.+++..|..           ..+++|++
T Consensus        11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhc-----------cCCCEEEe
Confidence            467778888888888888888888888888888888877777543 555553333333321           23455555


Q ss_pred             cCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccc
Q 043567          409 SSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFY  488 (911)
Q Consensus       409 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~  488 (911)
                      ++|.++ .+|..    .++|++|++++|.+++ +|..   +++|++|++++|++++ ++.    ..++|++|++++|.++
T Consensus        79 ~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           79 NNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLE  144 (454)
T ss_dssp             TTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCS
T ss_pred             cCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCC
Confidence            555555 23331    3455555555555554 3322   2455555565555552 221    1145566666666555


Q ss_pred             cccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhc
Q 043567          489 GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL  568 (911)
Q Consensus       489 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  568 (911)
                      + +| .++++++|++|++++|++++ +|..   ..+|++|++++|++++ +| .++.+++|++|++++|++++ +|... 
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~-  214 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP-  214 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence            4 33 35566666666666666553 3332   2356666666666654 34 35566666666666666553 33221 


Q ss_pred             cCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEE
Q 043567          569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLL  648 (911)
Q Consensus       569 ~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  648 (911)
                        ++|++|++++|.+. .+|....+++|++|++++|++++ +|..   .++|++|++++|++++ +|..   .++|++|+
T Consensus       215 --~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  283 (454)
T 1jl5_A          215 --LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLD  283 (454)
T ss_dssp             --TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             --CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence              35666666666655 33332255666666666666653 3332   2456666666666664 4432   25566666


Q ss_pred             ccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCC
Q 043567          649 LRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQ  728 (911)
Q Consensus       649 L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~  728 (911)
                      +++|++++ +|..   .++|+.|++++|++++ +|.    +                                       
T Consensus       284 ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~----~---------------------------------------  315 (454)
T 1jl5_A          284 VSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD----L---------------------------------------  315 (454)
T ss_dssp             CCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC----C---------------------------------------
T ss_pred             CcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC----C---------------------------------------
Confidence            66666654 1111   1456666666666542 110    0                                       


Q ss_pred             CCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccc
Q 043567          729 LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN  808 (911)
Q Consensus       729 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~  808 (911)
                                                      .++|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .
T Consensus       316 --------------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~  355 (454)
T 1jl5_A          316 --------------------------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L  355 (454)
T ss_dssp             --------------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C
T ss_pred             --------------------------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h
Confidence                                            0134445555555553 4433   345555555555555 3444   2


Q ss_pred             cCCCCEEeccCCcCcc--cCCCCCCCC-------------CCCCeEeccCCcCee--cCCCC
Q 043567          809 LKMIESLDLSHNRLSG--QIPPKLTEL-------------NFLSNFNVSYNNLSG--LIPDK  853 (911)
Q Consensus       809 l~~L~~LdLs~N~l~g--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~iP~~  853 (911)
                      +++|++||+++|++++  .+|.++.++             ++|++|++++|+++|  .||..
T Consensus       356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred             hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence            4555555555555555  555555554             789999999999998  88864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.7e-38  Score=344.74  Aligned_cols=294  Identities=24%  Similarity=0.355  Sum_probs=234.7

Q ss_pred             CChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCcc--ccceeecCCC--CcEEEEecCCCCccccccccc
Q 043567           36 ACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCN--WKGVRCNATT--GRVIQLLLNDTSKFIEYSKNY  111 (911)
Q Consensus        36 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~--w~gv~C~~~~--~~v~~l~L~~~~~~~~~~~~~  111 (911)
                      .|.++|++||++||+++.      +|. .+++|..+    ++||.  |.||+|+..+  ++|+.++|++..+  .     
T Consensus         2 ~c~~~~~~aL~~~k~~~~------~~~-~l~~W~~~----~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--~-----   63 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG------NPT-TLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--P-----   63 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT------CCG-GGTTCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--S-----
T ss_pred             CCCHHHHHHHHHHHHhcC------Ccc-cccCCCCC----CCCCcCCCcceEeCCCCCCceEEEEECCCCCc--c-----
Confidence            699999999999999994      444 78999764    78998  9999998655  8999999988776  1     


Q ss_pred             ccCCcccccccccccCCCCCCEEeCCC-CCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCC
Q 043567          112 TYGDMVLSLNVSLFHPFEELQSLDLSN-NSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE  190 (911)
Q Consensus       112 ~~~~~~~~~~~s~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  190 (911)
                        +.  . .-+..|..+++|++|++++ |.+.+.+|    ..++++++|++|++++|.+.+.+|..+.++++|++|++++
T Consensus        64 --~~--~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           64 --KP--Y-PIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             --SC--E-ECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             --CC--c-ccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence              10  0 1123677888999999984 88888777    6788888999999999988888888888889999999999


Q ss_pred             cccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCC-CCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCc
Q 043567          191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELK-NLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG  269 (911)
Q Consensus       191 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  269 (911)
                      |.+.+.+| ..+.++++|++|++++|++++.+|.. +..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++
T Consensus       135 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          135 NALSGTLP-PSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             SEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             CccCCcCC-hHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence            88887776 56888888888888888888777764 77787 888888888888888888888886 8888888888888


Q ss_pred             cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-CCChhh
Q 043567          270 SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-VIPPFL  348 (911)
Q Consensus       270 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~ip~~l  348 (911)
                      ..|..+..+++|++|++++|.+++.+|.  +..                         +++|++|++++|.+. .+|..+
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~-------------------------l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK--VGL-------------------------SKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG--CCC-------------------------CTTCCEEECCSSCCEECCCGGG
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc--ccc-------------------------cCCCCEEECcCCcccCcCChHH
Confidence            8888888888888888888888765552  222                         345566666777774 677778


Q ss_pred             hccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCc
Q 043567          349 LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNS  388 (911)
Q Consensus       349 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~  388 (911)
                      ..+++|++|++++|+++|.+|..  ..+++|+.+++++|+
T Consensus       265 ~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             hcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            88888888888888888777774  467777777777776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-36  Score=347.41  Aligned_cols=355  Identities=19%  Similarity=0.160  Sum_probs=251.7

Q ss_pred             hcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCc
Q 043567          374 QNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR  453 (911)
Q Consensus       374 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  453 (911)
                      .++++|++|++++|.+++..  .+..+++|++|++++|.+++ +|  +. .+++|++|++++|.+++. +  ++.+++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            46777888888888777642  35567777777777777774 44  32 367777777777777764 2  66777777


Q ss_pred             EEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC
Q 043567          454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN  533 (911)
Q Consensus       454 ~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  533 (911)
                      +|++++|++++ ++   +..+++|++|++++|.+++.   .++.+++|++|++++|+..+.+  .+..+++|++|++++|
T Consensus       110 ~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            77777777764 44   45667777777777777663   2566677777777777544444  3566677777777777


Q ss_pred             cCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccccccc
Q 043567          534 MLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIA  613 (911)
Q Consensus       534 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  613 (911)
                      ++++ +|  ++.+++|+.|++++|++++.   .+..+++|++|++++|++++ +| ...+++|++|++++|++++..   
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC---
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC---
Confidence            7765 33  66667777777777777653   25666777777777777766 33 225666777777777766532   


Q ss_pred             ccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccc
Q 043567          614 LFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWS  693 (911)
Q Consensus       614 l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~  693 (911)
                      +..+++|+.|++++|              +|+.|++++|.+.|.+|  ++.+++|+.|++++|++.|.+|.....++.+ 
T Consensus       250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L-  312 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL-  312 (457)
T ss_dssp             CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred             HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence            344556666666554              46778888998888887  4678999999999999888887543332210 


Q ss_pred             cCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCc
Q 043567          694 VGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK  773 (911)
Q Consensus       694 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  773 (911)
                                                                                     .....+.|+.|++++|+
T Consensus       313 ---------------------------------------------------------------~l~~~~~L~~L~L~~N~  329 (457)
T 3bz5_A          313 ---------------------------------------------------------------DLSQNPKLVYLYLNNTE  329 (457)
T ss_dssp             ---------------------------------------------------------------CCTTCTTCCEEECTTCC
T ss_pred             ---------------------------------------------------------------chhhcccCCEEECCCCc
Confidence                                                                           01223578999999999


Q ss_pred             ccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567          774 LTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK  853 (911)
Q Consensus       774 l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  853 (911)
                      ++| +|  ++.+++|+.|++++|+++|        ++.|+.|++++|+++|.     .++..|..+++++|+++|.||..
T Consensus       330 l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          330 LTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            998 44  9999999999999999996        24677889999999997     35667888999999999999975

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=339.19  Aligned_cols=356  Identities=21%  Similarity=0.225  Sum_probs=204.2

Q ss_pred             cccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhc
Q 043567          124 LFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLS  203 (911)
Q Consensus       124 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~  203 (911)
                      .+..+++|++|++++|.+++. +     .++.+++|++|++++|.+++. +  ++.+++|++|++++|++++. +   ++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-----~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~  103 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-----GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VT  103 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-----TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-----hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cC
Confidence            355667788888888877764 2     467777788888888777764 2  67777777777777777642 3   66


Q ss_pred             CCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCe
Q 043567          204 KLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEY  283 (911)
Q Consensus       204 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  283 (911)
                      ++++|++|++++|++++ ++   ++++++|++|++++|.+++. +  ++.+++|++|++++|+..+.+  .++.+++|++
T Consensus       104 ~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            77777777777777764 43   67777777777777777763 2  667777777777777554444  3666777777


Q ss_pred             eeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCC
Q 043567          284 LALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHND  363 (911)
Q Consensus       284 L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~  363 (911)
                      |++++|.+++ +|   +..+++|+.|+                         +++|.+..++  +..+++|++|++++|+
T Consensus       175 L~ls~n~l~~-l~---l~~l~~L~~L~-------------------------l~~N~l~~~~--l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          175 LDCSFNKITE-LD---VSQNKLLNRLN-------------------------CDTNNITKLD--LNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             EECCSSCCCC-CC---CTTCTTCCEEE-------------------------CCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred             EECCCCccce-ec---cccCCCCCEEE-------------------------CcCCcCCeec--cccCCCCCEEECcCCc
Confidence            7777777664 33   33444444444                         4444444332  3444555555555555


Q ss_pred             CCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccc
Q 043567          364 LDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA  443 (911)
Q Consensus       364 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  443 (911)
                      +++ +|   +..+++|++|++++|++++.   +...+++|+.|+++.|               +|+.|++++|.+.+.+|
T Consensus       224 l~~-ip---~~~l~~L~~L~l~~N~l~~~---~~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          224 LTE-ID---VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE
T ss_pred             ccc-cC---ccccCCCCEEEeeCCcCCCc---CHHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc
Confidence            553 33   23455555555555555542   2334455555554433               23344555555555554


Q ss_pred             hhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCC
Q 043567          444 SSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSK  523 (911)
Q Consensus       444 ~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  523 (911)
                        ++.+++|+.|++++|...+.+|.    ...+|+.+++++|             ++|++|++++|++++. +  +..++
T Consensus       282 --~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~  339 (457)
T 3bz5_A          282 --AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT  339 (457)
T ss_dssp             --CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT
T ss_pred             --ccccccCCEEECCCCcccceecc----CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCC
Confidence              34555566666666655555542    2334444443332             4555555555555542 2  55555


Q ss_pred             CCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCc
Q 043567          524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTT  589 (911)
Q Consensus       524 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~  589 (911)
                      +|++|++++|++++        ++.|..|++++|.+.|.     .++..|..+++++|+++|.+|.
T Consensus       340 ~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          340 KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             cCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            55555555555553        12344444555555543     1233344445555555554444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=347.41  Aligned_cols=343  Identities=19%  Similarity=0.161  Sum_probs=219.2

Q ss_pred             EEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC
Q 043567          454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN  533 (911)
Q Consensus       454 ~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  533 (911)
                      .++.+++.++ .+|..+   .++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            3444444443 344322   234555555555555555556666666666666666666666666666666666666666


Q ss_pred             cCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccc
Q 043567          534 MLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI  612 (911)
Q Consensus       534 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~  612 (911)
                      ++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|++++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            6665444556666666666666666666666666666666666666666666666555 666777777777777655555


Q ss_pred             cccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCC-cccccccc
Q 043567          613 ALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP-SCFTNITL  691 (911)
Q Consensus       613 ~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~  691 (911)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++ +| ..+..   
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~---  246 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRH---  246 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTT---
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcC---
Confidence            66677777777777777776666667777777777777777766666666666677777777777663 23 22221   


Q ss_pred             cccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEccc
Q 043567          692 WSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC  771 (911)
Q Consensus       692 ~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  771 (911)
                                                                                           +++|+.|||++
T Consensus       247 ---------------------------------------------------------------------l~~L~~L~Ls~  257 (477)
T 2id5_A          247 ---------------------------------------------------------------------LVYLRFLNLSY  257 (477)
T ss_dssp             ---------------------------------------------------------------------CTTCCEEECCS
T ss_pred             ---------------------------------------------------------------------ccccCeeECCC
Confidence                                                                                 23566677777


Q ss_pred             CcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567          772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       772 N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  851 (911)
                      |++++..+..+..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..++.|++|++++|++.+..+
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            77776666677777777777777777777777777777777777777777776666666777777777777777776543


Q ss_pred             CCCCCCccCccccCCCCCCCCC
Q 043567          852 DKGQFATFDESSYRGNLHLCGP  873 (911)
Q Consensus       852 ~~~~~~~~~~~~~~gn~~lcg~  873 (911)
                      ....+.......+.++...|..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          338 LLWVFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             GHHHHTTTTSSCCTTCCCBEEE
T ss_pred             hHhHHhhhhccccCccCceeCC
Confidence            2211111122334555555643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9e-35  Score=334.34  Aligned_cols=324  Identities=25%  Similarity=0.303  Sum_probs=223.8

Q ss_pred             ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      +++|++|++++|.+++..+  +..+++|++|++++|++++..+   +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence            5555555555555554333  5555555555555555553222   3455555555555555554322  5566666666


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS  584 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~  584 (911)
                      ++++|++++. + .+..+++|++|+++ |.+.+..  .++++++|+.|++++|.+++.  ..+..+++|+.|++++|.+.
T Consensus       140 ~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          140 ELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             EEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc
Confidence            6666666542 2 35666666666664 3444322  266667777777777776532  23666777777777777777


Q ss_pred             cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567          585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ  664 (911)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~  664 (911)
                      +..+ ...+++|++|++++|++++.  ..+..+++|+.|++++|.+++..|  +..+++|++|++++|++++..|  +..
T Consensus       213 ~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  285 (466)
T 1o6v_A          213 DITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG  285 (466)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             cccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence            6655 22567777888888877643  357778888888888888886544  7888888888888888886444  778


Q ss_pred             CCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccccee
Q 043567          665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE  744 (911)
Q Consensus       665 l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  744 (911)
                      +++|+.|++++|++++..|  +.                                                         
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~---------------------------------------------------------  306 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP--IS---------------------------------------------------------  306 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GG---------------------------------------------------------
T ss_pred             CCccCeEEcCCCcccCchh--hc---------------------------------------------------------
Confidence            8888889998888875332  11                                                         


Q ss_pred             eeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       745 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                                     .+++|+.|++++|++++..|  ++.+++|+.|++++|++++.  ..++++++|+.|++++|++++
T Consensus       307 ---------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          307 ---------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             ---------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             ---------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence                           13467889999999987766  78889999999999999875  468889999999999999998


Q ss_pred             cCCCCCCCCCCCCeEeccCCcCeec
Q 043567          825 QIPPKLTELNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       825 ~ip~~l~~l~~L~~L~ls~N~l~g~  849 (911)
                      .+|  +..++.|++|++++|++++.
T Consensus       368 ~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          368 LTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cch--hhcCCCCCEEeccCCcccCC
Confidence            887  88899999999999999883

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-34  Score=331.98  Aligned_cols=328  Identities=27%  Similarity=0.336  Sum_probs=235.9

Q ss_pred             CCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccc
Q 043567          399 KHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLL  478 (911)
Q Consensus       399 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~  478 (911)
                      .+++|++|++++|.++ .+|. +. .+++|++|++++|.+++..+  +..+++|++|++++|++++ ++.  +..+++|+
T Consensus        66 ~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~  137 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP--LKNLTNLN  137 (466)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCS
T ss_pred             hhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH--HcCCCCCC
Confidence            3444555555555544 2333 22 35666666666666654443  5666666666666666653 332  45666666


Q ss_pred             eeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcc
Q 043567          479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF  558 (911)
Q Consensus       479 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  558 (911)
                      +|++++|.+.+.  +.+..+++|++|+++ |.+.+..  .+..+++|++|++++|++++.  ..+..+++|++|++++|.
T Consensus       138 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          138 RLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             EEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc
Confidence            666666666542  236667777777775 4444332  267777788888888877643  346777888888888888


Q ss_pred             cccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhh
Q 043567          559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI  638 (911)
Q Consensus       559 l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l  638 (911)
                      +++..|  +..+++|+.|++++|.+.+. +....+++|++|++++|.+++..|  +..+++|+.|++++|++++..|  +
T Consensus       211 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~  283 (466)
T 1o6v_A          211 ISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L  283 (466)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred             cccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c
Confidence            776555  66778888888888887764 333378888888898888886655  7888999999999999986543  8


Q ss_pred             hcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccccc
Q 043567          639 NECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGI  718 (911)
Q Consensus       639 ~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~  718 (911)
                      ..+++|++|++++|++++..|  +..+++|+.|++++|++++..|  +..                              
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------------------------------  329 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS------------------------------  329 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG------------------------------
T ss_pred             cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc------------------------------
Confidence            889999999999999986544  7889999999999999886544  221                              


Q ss_pred             ccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcC
Q 043567          719 YYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFL  798 (911)
Q Consensus       719 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l  798 (911)
                                                                ++.|+.|++++|++++.  ..+..+++|+.|++++|++
T Consensus       330 ------------------------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          330 ------------------------------------------LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             ------------------------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence                                                      34678899999999865  4689999999999999999


Q ss_pred             CccccccccccCCCCEEeccCCcCcccCCCC
Q 043567          799 SESIPESFSNLKMIESLDLSHNRLSGQIPPK  829 (911)
Q Consensus       799 ~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~  829 (911)
                      ++.+|  ++.+++|+.|++++|++++ +|..
T Consensus       366 ~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          366 SDLTP--LANLTRITQLGLNDQAWTN-APVN  393 (466)
T ss_dssp             CBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred             Cccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence            98888  8999999999999999997 3443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.3e-36  Score=324.03  Aligned_cols=258  Identities=32%  Similarity=0.532  Sum_probs=213.4

Q ss_pred             CCcEEEccCccccc--ccchhhccCCCCcEEEccC-cccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEE
Q 043567          548 YLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSE-NYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTL  623 (911)
Q Consensus       548 ~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~-n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L  623 (911)
                      +++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..+ ++++|++|++++|++++.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34444444444444  4455555555555555552 55555555444 55666666677777777778888888999999


Q ss_pred             eCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCC-CCCeEEcCCCcCCCCCCcccccccccccCCcccccc
Q 043567          624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLT-GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRL  702 (911)
Q Consensus       624 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~  702 (911)
                      ++++|++++.+|..+..+++|++|++++|++++.+|..++.++ +|+.|++++|+++|.+|..+..+             
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-------------  197 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------  197 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-------------
Confidence            9999999988999999999999999999999999999999988 89999999999998888766542             


Q ss_pred             ccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccc
Q 043567          703 EHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI  782 (911)
Q Consensus       703 ~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i  782 (911)
                                                                                  .|+.|++++|++++.+|..+
T Consensus       198 ------------------------------------------------------------~L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          198 ------------------------------------------------------------NLAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             ------------------------------------------------------------CCSEEECCSSEEEECCGGGC
T ss_pred             ------------------------------------------------------------cccEEECcCCcccCcCCHHH
Confidence                                                                        26779999999999999999


Q ss_pred             cCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCccCcc
Q 043567          783 GELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDES  862 (911)
Q Consensus       783 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~  862 (911)
                      +.+++|++|+|++|++++.+|. ++.+++|++|||++|+++|.+|..+..++.|++|++++|+++|.+|..+++..+...
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l  296 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence            9999999999999999988887 899999999999999999999999999999999999999999999999888999999


Q ss_pred             ccCCCCCCCCCccCCCCC
Q 043567          863 SYRGNLHLCGPTINKSCN  880 (911)
Q Consensus       863 ~~~gn~~lcg~~l~~~c~  880 (911)
                      .+.||+++||.|+. .|.
T Consensus       297 ~l~~N~~lc~~p~~-~C~  313 (313)
T 1ogq_A          297 AYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             GTCSSSEEESTTSS-CCC
T ss_pred             HhcCCCCccCCCCC-CCC
Confidence            99999999998876 573

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.6e-34  Score=337.19  Aligned_cols=334  Identities=23%  Similarity=0.213  Sum_probs=225.8

Q ss_pred             CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEE
Q 043567          450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR  529 (911)
Q Consensus       450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  529 (911)
                      .+++.+++++|.++ .+|..++..+++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..|+.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            33444444444443 34444444444444444444444444444555566666666666666655555556666666666


Q ss_pred             CcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccc
Q 043567          530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP  609 (911)
Q Consensus       530 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~  609 (911)
                      +++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|+.|++++|.+++....  .+++|+.|++++|.+++ 
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSE-
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccc-
Confidence            666666644444456666666666666666655555566666666666666666554221  35666677777776653 


Q ss_pred             ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567          610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI  689 (911)
Q Consensus       610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l  689 (911)
                          +...++|+.|++++|.+... |..+  .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..+..+
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                23345677888888877643 3222  2578888888888876  4667888888888888888887766655432


Q ss_pred             cccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEc
Q 043567          690 TLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL  769 (911)
Q Consensus       690 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  769 (911)
                                                                                              ++|+.|+|
T Consensus       278 ------------------------------------------------------------------------~~L~~L~L  285 (597)
T 3oja_B          278 ------------------------------------------------------------------------QRLERLYI  285 (597)
T ss_dssp             ------------------------------------------------------------------------SSCCEEEC
T ss_pred             ------------------------------------------------------------------------cCCCEEEC
Confidence                                                                                    36777888


Q ss_pred             ccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567          770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       770 s~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  849 (911)
                      ++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|||++|++++. |  +..++.|++|++++|++++.
T Consensus       286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            8888885 6777788999999999999998 6888899999999999999999865 3  67788999999999999987


Q ss_pred             CCCCCCCCccCccccCCCCCCCCCc
Q 043567          850 IPDKGQFATFDESSYRGNLHLCGPT  874 (911)
Q Consensus       850 iP~~~~~~~~~~~~~~gn~~lcg~~  874 (911)
                      .+ ...+..+....+.+++..|+.+
T Consensus       361 ~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          361 SL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             hH-HHHHHHHhhhccccccccCCcc
Confidence            43 2356677777889999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-33  Score=317.38  Aligned_cols=335  Identities=21%  Similarity=0.196  Sum_probs=210.2

Q ss_pred             ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      +++++.+++++|.++...+..+..+++|++|++++|.++                         +..+..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-------------------------~~~~~~~~~l~~L~~L   98 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-------------------------EIDTYAFAYAHTIQKL   98 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-------------------------EECTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-------------------------ccChhhccCCCCcCEE
Confidence            455666666666555444444555555555555555554                         3333444455555555


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS  584 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~  584 (911)
                      ++++|++++..|..+..+++|++|++++|+++...+..++.+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus        99 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A           99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            55555555444444555555555555555555332233455555555555555555444444555555555555555555


Q ss_pred             cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567          585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ  664 (911)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~  664 (911)
                      +...  ..+++|+.|++++|.+++     +...++|+.|++++|.+... |..  ..++|++|++++|.+++.  ..+..
T Consensus       179 ~~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~  246 (390)
T 3o6n_A          179 HVDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN  246 (390)
T ss_dssp             BCCG--GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred             cccc--ccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC
Confidence            4321  134556666666666552     22334677777777777643 332  245777777777777653  46777


Q ss_pred             CCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccccee
Q 043567          665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE  744 (911)
Q Consensus       665 l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  744 (911)
                      +++|+.|++++|.+++..|..+..                                                        
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------------------------  270 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVK--------------------------------------------------------  270 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred             CCCccEEECCCCcCCCcChhHccc--------------------------------------------------------
Confidence            777777788777777655554433                                                        


Q ss_pred             eeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       745 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                                      ++.|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++
T Consensus       271 ----------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          271 ----------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             ----------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             ----------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence                            2356778888888874 5666778899999999999998 577778999999999999999985


Q ss_pred             cCCCCCCCCCCCCeEeccCCcCeecCCCCCCCCccCccccCCCCCCCCCc
Q 043567          825 QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPT  874 (911)
Q Consensus       825 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  874 (911)
                      . |  +..++.|++|++++|++++.-. ...+..+....+.+++..|+.+
T Consensus       333 ~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          333 L-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             C-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred             e-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence            4 3  6788899999999999988532 2345556666778888888643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.2e-34  Score=328.33  Aligned_cols=271  Identities=18%  Similarity=0.174  Sum_probs=154.3

Q ss_pred             cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567          404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS  483 (911)
Q Consensus       404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~  483 (911)
                      +.++.+++.++ .+|..+   .+++++|++++|++++..+..|.++++|++|+|++|.+++..|. .+..+++|++|+|+
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECC
Confidence            34555555555 566544   35677777777777766666777777777777777776633232 33455666666666


Q ss_pred             CcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccccc
Q 043567          484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNI  563 (911)
Q Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  563 (911)
                      +|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            66655544445566666666666666666666666666666666666666666666666666666666666666666544


Q ss_pred             chhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCC
Q 043567          564 PVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS  642 (911)
Q Consensus       564 p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~  642 (911)
                      +..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            4556666666666666665555544444 455555555555554444444444444455555555554432223444444


Q ss_pred             CccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       643 ~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      +|++|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence            4444444444444444444444444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.7e-32  Score=304.42  Aligned_cols=313  Identities=21%  Similarity=0.213  Sum_probs=249.2

Q ss_pred             CCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCC
Q 043567          127 PFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLK  206 (911)
Q Consensus       127 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  206 (911)
                      .++++++|++++|.++...+    ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ ..+.+++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred             ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCC
Confidence            46899999999999887655    567889999999999999998888899999999999999999985444 6789999


Q ss_pred             CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeec
Q 043567          207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL  286 (911)
Q Consensus       207 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  286 (911)
                      +|++|++++|+++ .+|...|.++++|++|++++|.+++..|..+.++++|++|++++|++++.   .++.+++|++|++
T Consensus       118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l  193 (390)
T 3o6n_A          118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV  193 (390)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred             CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence            9999999999998 77777789999999999999999998888899999999999999999865   3667899999999


Q ss_pred             cCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCC
Q 043567          287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG  366 (911)
Q Consensus       287 ~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~  366 (911)
                      ++|.+++      +...++|+.|++++|..... +.   ...++|+.|++++|.+..+ +.+..+++|++|++++|.+++
T Consensus       194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          194 SYNLLST------LAIPIAVEELDASHNSINVV-RG---PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             CSSCCSE------EECCSSCSEEECCSSCCCEE-EC---CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE
T ss_pred             ccccccc------cCCCCcceEEECCCCeeeec-cc---cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC
Confidence            9998863      33456788888887654322 22   2236788888888888765 467778888888888888875


Q ss_pred             CCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhh
Q 043567          367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSI  446 (911)
Q Consensus       367 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l  446 (911)
                      ..|.. +..+++|++|++++|++++.. .....+++|++|++++|.++ .+|..+.. +++|++|++++|.+++. +  +
T Consensus       263 ~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~~-~--~  335 (390)
T 3o6n_A          263 IMYHP-FVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-K--L  335 (390)
T ss_dssp             EESGG-GTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-C--C
T ss_pred             cChhH-ccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCcccee-C--c
Confidence            55543 457888888888888887642 23356778888888888877 67766654 78888888888887754 2  5


Q ss_pred             hcCCCCcEEeccCcccCCcc
Q 043567          447 AEMKELRFLDLSKNNFSGEL  466 (911)
Q Consensus       447 ~~l~~L~~L~Ls~n~l~g~i  466 (911)
                      ..+++|++|++++|++.+.-
T Consensus       336 ~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          336 STHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CTTCCCSEEECCSSCEEHHH
T ss_pred             hhhccCCEEEcCCCCccchh
Confidence            66777888888888776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.2e-31  Score=296.04  Aligned_cols=304  Identities=20%  Similarity=0.302  Sum_probs=184.3

Q ss_pred             ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++.  +..+++|++|++++|.+++.  +.+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            6667777777776653 23 3666666777777666665 3333  34555555555555544432  234444444444


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS  584 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~  584 (911)
                                              ++++|++++. +. +..+++|+.|++++|.....++. +..+++|++|++++|.+.
T Consensus       116 ------------------------~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~  168 (347)
T 4fmz_A          116 ------------------------YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK  168 (347)
T ss_dssp             ------------------------ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ------------------------ECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC
Confidence                                    4444444422 11 44445555555555533322222 445555555555555554


Q ss_pred             cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567          585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ  664 (911)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~  664 (911)
                      +..+ ...+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..
T Consensus       169 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~  241 (347)
T 4fmz_A          169 DVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN  241 (347)
T ss_dssp             CCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             Cchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence            4333 2245566666666666653322  6666777777777777775433  6677777777777777764333  677


Q ss_pred             CCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccccee
Q 043567          665 LTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVE  744 (911)
Q Consensus       665 l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  744 (911)
                      +++|+.|++++|.+++. + .+                                                          
T Consensus       242 l~~L~~L~l~~n~l~~~-~-~~----------------------------------------------------------  261 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDI-N-AV----------------------------------------------------------  261 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GG----------------------------------------------------------
T ss_pred             CCCCCEEECCCCccCCC-h-hH----------------------------------------------------------
Confidence            77777777777776531 1 11                                                          


Q ss_pred             eeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          745 VEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       745 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                                    ..+++|+.|++++|++++.  +.+..+++|+.|++++|++++..|..++.+++|+.|++++|++++
T Consensus       262 --------------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          262 --------------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             --------------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             --------------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence                          1134667788888877753  347778888888888888888888888888888888888888887


Q ss_pred             cCCCCCCCCCCCCeEeccCCcCe
Q 043567          825 QIPPKLTELNFLSNFNVSYNNLS  847 (911)
Q Consensus       825 ~ip~~l~~l~~L~~L~ls~N~l~  847 (911)
                      ..|  +..++.|++|++++|+++
T Consensus       326 ~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          326 IRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CGG--GGGCTTCSEESSSCC---
T ss_pred             ccC--hhhhhccceeehhhhccc
Confidence            666  777888888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.4e-34  Score=333.02  Aligned_cols=377  Identities=19%  Similarity=0.179  Sum_probs=253.5

Q ss_pred             CCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccc----ccchhhhcCCCCcEEeccCcccCCcccHHHHhccc-
Q 043567          401 DFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG----NIASSIAEMKELRFLDLSKNNFSGELSAALLTSCF-  475 (911)
Q Consensus       401 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~-  475 (911)
                      ++|++|++++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567778887777644444445568899999999999875    35667788899999999999987655656655566 


Q ss_pred             ---ccceeeccCccccc----ccCCCCCCCCCCCEEEccCcccccccccccc-----CCCCCcEEECcCCcCccc----C
Q 043567          476 ---SLLWLGLSDNNFYG----RIFPGYMNLTQLQYLYLENNKFSGKIEEGLL-----KSKKLVELRMSSNMLSGH----I  539 (911)
Q Consensus       476 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~  539 (911)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|++++.    +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    4567778888888888888888755444332     245788888888888763    3


Q ss_pred             CcCccCcCCCcEEEccCcccccccchhhcc-----CCCCcEEEccCcccccc----cCccc-ccccccEEEcccCccccc
Q 043567          540 PHWMGNLSYLEVLLMSKNFFEGNIPVQLLN-----HRRLQLFSVSENYLSGF----MTTSF-NISSVEHLYLQKNSLSGP  609 (911)
Q Consensus       540 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~ls~n~l~~~----~~~~~-~~~~L~~L~Ls~n~l~~~  609 (911)
                      +..+..+++|++|++++|.++...+..+..     .++|+.|++++|.+++.    ++..+ .+++|++|++++|++++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            455666788888888888877554444432     55788888888877764    23333 567777888887777654


Q ss_pred             c-----cccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccccCChhhhcC-----CCCCeEEcCC
Q 043567          610 I-----PIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQIPNQICQL-----TGLGMMDLSH  675 (911)
Q Consensus       610 ~-----p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l-----~~L~~L~Ls~  675 (911)
                      .     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|.+.+..+..+...     ++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2     22222467788888888877753    56667777778888888877765544444432     5777778877


Q ss_pred             CcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceee
Q 043567          676 NKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV  755 (911)
Q Consensus       676 N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (911)
                      |.+++.....+...                                                                  
T Consensus       323 n~l~~~~~~~l~~~------------------------------------------------------------------  336 (461)
T 1z7x_W          323 CSFTAACCSHFSSV------------------------------------------------------------------  336 (461)
T ss_dssp             SCCBGGGHHHHHHH------------------------------------------------------------------
T ss_pred             CCCchHHHHHHHHH------------------------------------------------------------------
Confidence            77664311111100                                                                  


Q ss_pred             ccCCcCccccEEEcccCcccccCCccccC-----CCCCCEEECCCCcCCc----cccccccccCCCCEEeccCCcCccc-
Q 043567          756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGE-----LQEIPVLNMSHNFLSE----SIPESFSNLKMIESLDLSHNRLSGQ-  825 (911)
Q Consensus       756 ~~~~~l~~L~~LdLs~N~l~g~ip~~i~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l~g~-  825 (911)
                        ...++.|+.||+++|++++..+..+..     .++|++|+|++|++++    .+|..+..+++|++||+++|++++. 
T Consensus       337 --l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          337 --LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             --HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             --HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence              001246677888888777665555543     5678888888888776    6777777778888888888877754 


Q ss_pred             -------CCCCCCCCCCCCeEeccCCcCee
Q 043567          826 -------IPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       826 -------ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                             +|..   ...|+.|++.++....
T Consensus       415 ~~~l~~~l~~~---~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          415 ILQLVESVRQP---GCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHHHHHTST---TCCCCEEECTTCCCCH
T ss_pred             HHHHHHHhccC---CcchhheeecccccCH
Confidence                   3332   2345555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-31  Score=318.24  Aligned_cols=311  Identities=20%  Similarity=0.175  Sum_probs=217.0

Q ss_pred             cCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEE
Q 043567          426 QKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLY  505 (911)
Q Consensus       426 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  505 (911)
                      .+++.+++++|.+....+..+..+++|++|++++|.+++ ++...+..+++|+.|+|++|.+++..+..|+.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            344444444444443333334444444444444444442 2222233444444455555554444455556666777777


Q ss_pred             ccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccccc
Q 043567          506 LENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSG  585 (911)
Q Consensus       506 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~  585 (911)
                      |++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. +  +..+++|+.+++++|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence            777777654444456677777777777777766666677777777777777777643 2  4456777777777777665


Q ss_pred             ccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcC
Q 043567          586 FMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL  665 (911)
Q Consensus       586 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l  665 (911)
                      ..    ..++|+.|++++|.+... |..+  .++|+.|+|++|.+++  +.++..+++|++|+|++|.+++.+|..++.+
T Consensus       207 l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          207 LA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             EE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             cc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence            32    235688888888888743 3322  2689999999999986  4788999999999999999999999999999


Q ss_pred             CCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceee
Q 043567          666 TGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEV  745 (911)
Q Consensus       666 ~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  745 (911)
                      ++|+.|+|++|.+++ +|..+                                                           
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~-----------------------------------------------------------  297 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYG-----------------------------------------------------------  297 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSS-----------------------------------------------------------
T ss_pred             cCCCEEECCCCCCCC-CCccc-----------------------------------------------------------
Confidence            999999999999875 23221                                                           


Q ss_pred             eeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567          746 EFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ  825 (911)
Q Consensus       746 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~  825 (911)
                                   ..++.|+.|||++|.++ .+|..++.+++|+.|+|++|++++. |  ++.+++|+.|++++|.+++.
T Consensus       298 -------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          298 -------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             -------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             -------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence                         12457889999999999 7888899999999999999999865 3  67888999999999999875


Q ss_pred             C
Q 043567          826 I  826 (911)
Q Consensus       826 i  826 (911)
                      .
T Consensus       361 ~  361 (597)
T 3oja_B          361 S  361 (597)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.8e-31  Score=291.32  Aligned_cols=307  Identities=21%  Similarity=0.313  Sum_probs=229.7

Q ss_pred             CCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccc
Q 043567          397 DDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFS  476 (911)
Q Consensus       397 ~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~  476 (911)
                      ...+++|++|+++++.+. .+|. +. .+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             chhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence            347889999999999997 5665 43 49999999999999986544  899999999999999998 4553  678999


Q ss_pred             cceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccC
Q 043567          477 LLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK  556 (911)
Q Consensus       477 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  556 (911)
                      |++|++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            9999999999986543  7778888888888886554433 36677777777777777764332  55666666666666


Q ss_pred             cccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCch
Q 043567          557 NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPH  636 (911)
Q Consensus       557 n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~  636 (911)
                      |.+.+. +. +..+                       ++|+.+++++|.+++..+  +..+++|++|++++|++++. |.
T Consensus       187 n~l~~~-~~-~~~l-----------------------~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~  238 (347)
T 4fmz_A          187 NQIEDI-SP-LASL-----------------------TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP  238 (347)
T ss_dssp             SCCCCC-GG-GGGC-----------------------TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred             Cccccc-cc-ccCC-----------------------CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc
Confidence            665532 22 4444                       455555555555554333  56677788888888877754 33


Q ss_pred             hhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccc
Q 043567          637 QINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI  716 (911)
Q Consensus       637 ~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~  716 (911)
                       +..+++|++|++++|.+++ + ..+..+++|+.|++++|++++. | .+.                             
T Consensus       239 -~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~-----------------------------  284 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-S-VLN-----------------------------  284 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-G-GGG-----------------------------
T ss_pred             -hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-h-hhc-----------------------------
Confidence             7778888888888888875 3 4577888888888888887642 1 111                             


Q ss_pred             ccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCC
Q 043567          717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN  796 (911)
Q Consensus       717 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N  796 (911)
                                                                 .++.|+.|++++|++++..|..++.+++|++|++++|
T Consensus       285 -------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          285 -------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             -------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             -------------------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence                                                       1346788999999999888899999999999999999


Q ss_pred             cCCccccccccccCCCCEEeccCCcCc
Q 043567          797 FLSESIPESFSNLKMIESLDLSHNRLS  823 (911)
Q Consensus       797 ~l~g~ip~~l~~l~~L~~LdLs~N~l~  823 (911)
                      ++++..|  ++.+++|+.||+++|+++
T Consensus       322 ~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          322 HITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccccC--hhhhhccceeehhhhccc
Confidence            9998777  889999999999999886

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.8e-30  Score=284.61  Aligned_cols=288  Identities=20%  Similarity=0.235  Sum_probs=165.5

Q ss_pred             CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567          451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM  530 (911)
Q Consensus       451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  530 (911)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666665 455432   234555555555555444444555555555555555555444445555555555555


Q ss_pred             cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccc--c
Q 043567          531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS--G  608 (911)
Q Consensus       531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~--~  608 (911)
                      ++|+++ .+|..+.  ++|++|++++|.+++..+..+..                       +++|++|++++|.++  +
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG-----------------------LRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS-----------------------CSSCCEEECCSCCCBGGG
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCC-----------------------CccCCEEECCCCccccCC
Confidence            555554 3333332  44444444444444333333444                       444555555555543  2


Q ss_pred             cccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccc
Q 043567          609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN  688 (911)
Q Consensus       609 ~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  688 (911)
                      ..|..+..+ +|+.|++++|++++ +|..+.  ++|++|++++|++++..|..+..+++|+.|+|++|++++..|..+..
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            344445554 66666666666663 444443  56677777777776666666667777777777777766544443332


Q ss_pred             ccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEE
Q 043567          689 ITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLD  768 (911)
Q Consensus       689 l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  768 (911)
                                                                                              +++|+.|+
T Consensus       240 ------------------------------------------------------------------------l~~L~~L~  247 (332)
T 2ft3_A          240 ------------------------------------------------------------------------LPTLRELH  247 (332)
T ss_dssp             ------------------------------------------------------------------------CTTCCEEE
T ss_pred             ------------------------------------------------------------------------CCCCCEEE
Confidence                                                                                    23556677


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc------CCCCEEeccCCcCc--ccCCCCCCCCCCCCeEe
Q 043567          769 LSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL------KMIESLDLSHNRLS--GQIPPKLTELNFLSNFN  840 (911)
Q Consensus       769 Ls~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~~LdLs~N~l~--g~ip~~l~~l~~L~~L~  840 (911)
                      +++|+++ .+|..++.+++|++|++++|++++..+..+...      ..|+.|++++|.+.  +..|..+..++.|+.++
T Consensus       248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            7777777 677777777777777777777776666666543      56777788887776  55666777777777777


Q ss_pred             ccCCc
Q 043567          841 VSYNN  845 (911)
Q Consensus       841 ls~N~  845 (911)
                      +++|+
T Consensus       327 l~~n~  331 (332)
T 2ft3_A          327 FGNYK  331 (332)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            77764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.3e-30  Score=280.91  Aligned_cols=249  Identities=24%  Similarity=0.277  Sum_probs=208.2

Q ss_pred             CCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEc
Q 043567          427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL  506 (911)
Q Consensus       427 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  506 (911)
                      +++.++++++.++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            7999999999998 566655  378999999999998 555555689999999999999999998999999999999999


Q ss_pred             cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccc--cccchhhccCCCCcEEEccCcccc
Q 043567          507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFE--GNIPVQLLNHRRLQLFSVSENYLS  584 (911)
Q Consensus       507 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~ls~n~l~  584 (911)
                      ++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.++  +..|..+..+ +|++|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999998 5666554  89999999999999777778999999999999999996  3667777777 8999999999988


Q ss_pred             cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhc
Q 043567          585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQ  664 (911)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~  664 (911)
                      +......  ++|++|++++|++++..|..+..+++|+.|++++|++++..|.++..+++|++|++++|+++ .+|..+..
T Consensus       186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            7443322  67888888888888777778888888888888888888777777888888888888888887 77878888


Q ss_pred             CCCCCeEEcCCCcCCCCCCccc
Q 043567          665 LTGLGMMDLSHNKFNGSIPSCF  686 (911)
Q Consensus       665 l~~L~~L~Ls~N~l~g~ip~~~  686 (911)
                      +++|+.|++++|++++..+..|
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSS
T ss_pred             CccCCEEECCCCCCCccChhHc
Confidence            8888888888888875444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-29  Score=277.70  Aligned_cols=289  Identities=21%  Similarity=0.213  Sum_probs=148.6

Q ss_pred             CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567          451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM  530 (911)
Q Consensus       451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  530 (911)
                      +++.++++++.++ .+|..+   .++++.|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4666666666665 444322   234455555555554444444444455555555555544444444444444444444


Q ss_pred             cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccc--c
Q 043567          531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLS--G  608 (911)
Q Consensus       531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~--~  608 (911)
                      ++|+++ .+|..+.  ++|++|++++|.+++..+..+.+++                       +|++|++++|.+.  +
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-----------------------~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-----------------------QMIVVELGTNPLKSSG  161 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-----------------------TCCEEECCSSCCCGGG
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCc-----------------------cccEEECCCCcCCccC
Confidence            444444 2333222  3444444444444433333344444                       4444444444442  2


Q ss_pred             cccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccc
Q 043567          609 PIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTN  688 (911)
Q Consensus       609 ~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  688 (911)
                      ..+..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++..|..+..+++|+.|+|++|++++..|..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            33445555556666666666555 2344332  45666666666666555566666666666666666655433333222


Q ss_pred             ccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEE
Q 043567          689 ITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLD  768 (911)
Q Consensus       689 l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  768 (911)
                                                                                              +++|+.|+
T Consensus       239 ------------------------------------------------------------------------l~~L~~L~  246 (330)
T 1xku_A          239 ------------------------------------------------------------------------TPHLRELH  246 (330)
T ss_dssp             ------------------------------------------------------------------------STTCCEEE
T ss_pred             ------------------------------------------------------------------------CCCCCEEE
Confidence                                                                                    12455566


Q ss_pred             cccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc------CCCCEEeccCCcCcc--cCCCCCCCCCCCCeEe
Q 043567          769 LSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL------KMIESLDLSHNRLSG--QIPPKLTELNFLSNFN  840 (911)
Q Consensus       769 Ls~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~  840 (911)
                      +++|+++ .+|..+..+++|++|++++|++++..+..|...      ..|+.|++++|.+..  ..|..+..+..++.++
T Consensus       247 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~  325 (330)
T 1xku_A          247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  325 (330)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             CCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence            6666666 566666666666666666666665555555332      556666666666642  3445566666666666


Q ss_pred             ccCCc
Q 043567          841 VSYNN  845 (911)
Q Consensus       841 ls~N~  845 (911)
                      +++|+
T Consensus       326 L~~N~  330 (330)
T 1xku_A          326 LGNYK  330 (330)
T ss_dssp             C----
T ss_pred             ecccC
Confidence            66663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.8e-29  Score=276.57  Aligned_cols=252  Identities=20%  Similarity=0.238  Sum_probs=208.5

Q ss_pred             ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      ..+++.++++++.++ .+|..+  .+.+++|++++|+++ .++...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        30 ~c~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QCHLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EEETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            347899999999988 456544  368999999999998 5665556899999999999999999889999999999999


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEccCcc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVSENY  582 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls~n~  582 (911)
                      ++++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            99999998 5666554  799999999999998877889999999999999999963  677888999999999999999


Q ss_pred             cccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhh
Q 043567          583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQI  662 (911)
Q Consensus       583 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l  662 (911)
                      ++.......  ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+
T Consensus       183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            886543332  67888888888888777777888888888888888888777777888888888888888887 677777


Q ss_pred             hcCCCCCeEEcCCCcCCCCCCccc
Q 043567          663 CQLTGLGMMDLSHNKFNGSIPSCF  686 (911)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~g~ip~~~  686 (911)
                      ..+++|++|++++|++++..+..|
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccCCCcCEEECCCCcCCccChhhc
Confidence            888888888888888775444333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.4e-32  Score=314.34  Aligned_cols=377  Identities=19%  Similarity=0.103  Sum_probs=225.7

Q ss_pred             CCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-----CCChhhhccCC
Q 043567          279 TSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-----VIPPFLLHQFD  353 (911)
Q Consensus       279 ~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~ip~~l~~~~~  353 (911)
                      ++|++|++++|+++.......+..+++|++|+++                         +|.+.     .++..+..+++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-------------------------~~~l~~~~~~~l~~~l~~~~~   57 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-------------------------DCGLTEARCKDISSALRVNPA   57 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-------------------------SSCCCHHHHHHHHHHHHTCTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEcc-------------------------CCCCCHHHHHHHHHHHHhCCC
Confidence            4577888888877643322335566666666555                         44443     34555666677


Q ss_pred             CCEEECCCCCCCCCCchhhhhcCC----cccEEEccCCccccc----cCCCCCCCCCccEEEccCCcCCcCCChhHHHh-
Q 043567          354 LKYLDLSHNDLDGAFPTWALQNNT----KLEVLLLTNNSFTGN----LQLPDDKHDFLHHLDISSNNFTGKLPQDMGII-  424 (911)
Q Consensus       354 L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~-  424 (911)
                      |++|++++|.+++..+..++..++    +|++|++++|.++..    .+..+..+++|++|++++|.+++..+..+... 
T Consensus        58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  137 (461)
T 1z7x_W           58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  137 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence            777777777766444444444455    577777777776632    12234566777777777777765444444332 


Q ss_pred             ---ccCCcEEEcccCcccccc----chhhhcCCCCcEEeccCcccCCcccHHHHh----cccccceeeccCcccccc---
Q 043567          425 ---LQKLLYMDMSNNHFEGNI----ASSIAEMKELRFLDLSKNNFSGELSAALLT----SCFSLLWLGLSDNNFYGR---  490 (911)
Q Consensus       425 ---l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~----~~~~L~~L~L~~n~l~~~---  490 (911)
                         .++|++|++++|.+++..    +..+..+++|++|++++|.+++..+..+..    ..++|+.|++++|.+++.   
T Consensus       138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence               235888888888777643    555666778888888888776443333322    234677777777766653   


Q ss_pred             -cCCCCCCCCCCCEEEccCccccccc-----cccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccc
Q 043567          491 -IFPGYMNLTQLQYLYLENNKFSGKI-----EEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFE  560 (911)
Q Consensus       491 -~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  560 (911)
                       ++..+..+++|++|++++|++++..     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|.++
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence             3444556677777777777766432     22222466777777777776643    4555566677777777777666


Q ss_pred             cccchhhccC-----CCCcEEEccCccccccc----Cccc-ccccccEEEcccCcccccccccccC-----CCCCCEEeC
Q 043567          561 GNIPVQLLNH-----RRLQLFSVSENYLSGFM----TTSF-NISSVEHLYLQKNSLSGPIPIALFR-----SSNLLTLDL  625 (911)
Q Consensus       561 ~~~p~~l~~~-----~~L~~L~ls~n~l~~~~----~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~L  625 (911)
                      +..+..+...     ++|+.|++++|.+++..    +..+ .+++|++|++++|++++..+..+..     .++|++|++
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            5444333322     56777777777666542    2222 4566777777777666554443332     456777777


Q ss_pred             CCCcccc----cCchhhhcCCCccEEEccCCcccccCChhhh-----cCCCCCeEEcCCCcCCC
Q 043567          626 RDNGFSG----VIPHQINECSNLRFLLLRGNNLEGQIPNQIC-----QLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       626 s~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~-----~l~~L~~L~Ls~N~l~g  680 (911)
                      ++|++++    .+|..+..+++|++|++++|++++.-...+.     ....|+.|++.++.+..
T Consensus       378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            7777765    5666666677777777777776643222221     12356666666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.1e-30  Score=282.71  Aligned_cols=284  Identities=20%  Similarity=0.205  Sum_probs=182.3

Q ss_pred             CCChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCccccceeecCCCCcEEEEecCCCCcccccccccccC
Q 043567           35 KACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYG  114 (911)
Q Consensus        35 ~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~  114 (911)
                      .++..+|++||++||+++.     .|+.+.+++|........++|.|.||+|......+                     
T Consensus        22 ~~~~~~~~~aLl~~k~~~~-----~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l---------------------   75 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYN-----ADRNRWHSAWRQANSNNPQIETRTGRALKATADLL---------------------   75 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHH-----HCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHH---------------------
T ss_pred             cccCchHHHHHHHHHHhcc-----CCchhhhhhhcccccccccccccCCcchhhhHHHH---------------------
Confidence            3466789999999999884     24556678894111113689999999995310000                     


Q ss_pred             CcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccC
Q 043567          115 DMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQ  194 (911)
Q Consensus       115 ~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  194 (911)
                               .....+++++|+|++|.++. +|    ..++++++|++|++++|.+. .+|..++++++|++|+|++|.+.
T Consensus        76 ---------~~~~~~~l~~L~L~~n~l~~-lp----~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~  140 (328)
T 4fcg_A           76 ---------EDATQPGRVALELRSVPLPQ-FP----DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR  140 (328)
T ss_dssp             ---------HHHTSTTCCEEEEESSCCSS-CC----SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC
T ss_pred             ---------hcccccceeEEEccCCCchh-cC----hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc
Confidence                     00123456666666666653 33    34556666777777777666 56666666777777777777666


Q ss_pred             CccChhhhcCCCCCCEEeCCCCCCCCccCccc--------ccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCc
Q 043567          195 GSRTKQGLSKLKNLEALDLSSNFINGSLESQG--------ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ  266 (911)
Q Consensus       195 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~--------~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  266 (911)
                       .+| ..+.++++|++|++++|++.+.+|...        +.++++|++|++++|.++ .+|..++++++|++|++++|+
T Consensus       141 -~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          141 -ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             -CCC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred             -cCc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence             455 356667777777777766666666431        234777777777777777 467777777777777777777


Q ss_pred             CCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCC-CCCC
Q 043567          267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSL-NVIP  345 (911)
Q Consensus       267 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip  345 (911)
                      +++ +|..++.+++|++|++++|.+.+.+| ..++.+++|+.                         |++++|.+ +.+|
T Consensus       218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~-------------------------L~L~~n~~~~~~p  270 (328)
T 4fcg_A          218 LSA-LGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKR-------------------------LILKDCSNLLTLP  270 (328)
T ss_dssp             CCC-CCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCE-------------------------EECTTCTTCCBCC
T ss_pred             CCc-CchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCE-------------------------EECCCCCchhhcc
Confidence            774 55567777777777777777776666 23444444333                         33344433 4556


Q ss_pred             hhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccc
Q 043567          346 PFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFT  390 (911)
Q Consensus       346 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  390 (911)
                      ..+..+++|++|++++|++.+.+|.++. ++++|+.+++..+.+.
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGSC
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHHH
Confidence            6667777777778888777777777654 6777777776655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.8e-30  Score=303.68  Aligned_cols=380  Identities=13%  Similarity=0.039  Sum_probs=231.8

Q ss_pred             CCCCccEEEccCCcCCcCCChhHHHhccC-CcEEEcccCc-ccc-ccchhhhcCCCCcEEeccCcccCCccc---HHHHh
Q 043567          399 KHDFLHHLDISSNNFTGKLPQDMGIILQK-LLYMDMSNNH-FEG-NIASSIAEMKELRFLDLSKNNFSGELS---AALLT  472 (911)
Q Consensus       399 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~-L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~g~i~---~~~~~  472 (911)
                      .+++|++|++++|.+++..+..+...+++ |++|++++|. ++. .++.....+++|++|++++|.+++.-.   ..+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            45667777777776665555555443444 7777777765 211 122233467777777777777654421   12345


Q ss_pred             cccccceeeccCcccc----cccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCc---ccCCcCccC
Q 043567          473 SCFSLLWLGLSDNNFY----GRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLS---GHIPHWMGN  545 (911)
Q Consensus       473 ~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~  545 (911)
                      .+++|+.|+++.|.+.    +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+...   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            6677777777777765    2233344566777777777777764 5666777777887777653322   234456667


Q ss_pred             cCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcc-c-ccccccEEEcccCcccccccccccCCCCCCEE
Q 043567          546 LSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTS-F-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTL  623 (911)
Q Consensus       546 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~-~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L  623 (911)
                      +++|+.++++++. .+.+|..+..+++|++|++++|.+++..... + .+++|++|+++++-..+.++.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            7777777777753 3356777777778888888877765544322 2 67778888887433333344445667778888


Q ss_pred             eCC-----------CCccccc-CchhhhcCCCccEEEccCCcccccCChhhhc-CCCCCeEEcC----CCcCCCCCCc-c
Q 043567          624 DLR-----------DNGFSGV-IPHQINECSNLRFLLLRGNNLEGQIPNQICQ-LTGLGMMDLS----HNKFNGSIPS-C  685 (911)
Q Consensus       624 ~Ls-----------~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~-l~~L~~L~Ls----~N~l~g~ip~-~  685 (911)
                      +++           .|.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++...+ .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            888           3555543 2233455778888888888887777777765 7788888885    4555432110 0


Q ss_pred             cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCcccc
Q 043567          686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV  765 (911)
Q Consensus       686 ~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  765 (911)
                      +..+                                                                    ...+++|+
T Consensus       428 ~~~~--------------------------------------------------------------------~~~~~~L~  439 (592)
T 3ogk_B          428 VRSL--------------------------------------------------------------------LIGCKKLR  439 (592)
T ss_dssp             HHHH--------------------------------------------------------------------HHHCTTCC
T ss_pred             HHHH--------------------------------------------------------------------HHhCCCCC
Confidence            0000                                                                    01134566


Q ss_pred             EEEcccC--cccccCCccccC-CCCCCEEECCCCcCCc-cccccccccCCCCEEeccCCcCccc-CCCCCCCCCCCCeEe
Q 043567          766 GLDLSCN--KLTGEIPSEIGE-LQEIPVLNMSHNFLSE-SIPESFSNLKMIESLDLSHNRLSGQ-IPPKLTELNFLSNFN  840 (911)
Q Consensus       766 ~LdLs~N--~l~g~ip~~i~~-l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~  840 (911)
                      .|+++++  .+++..+..++. +++|+.|+|++|++++ .+|..+..+++|+.|||++|++++. ++..+..++.|++|+
T Consensus       440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred             EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence            6777633  366555555543 6677777777777765 3455556667777777777776654 333334566777777


Q ss_pred             ccCCcCee
Q 043567          841 VSYNNLSG  848 (911)
Q Consensus       841 ls~N~l~g  848 (911)
                      +++|++++
T Consensus       520 ls~n~it~  527 (592)
T 3ogk_B          520 VQGYRASM  527 (592)
T ss_dssp             EESCBCCT
T ss_pred             CcCCcCCH
Confidence            77777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=4.1e-30  Score=305.57  Aligned_cols=347  Identities=11%  Similarity=0.045  Sum_probs=206.7

Q ss_pred             ccCCcEEEcccCccccc----cchhhhcCCCCcEEeccCcccCCcc---cHHHHhcccccceeeccCcccccccCCCCCC
Q 043567          425 LQKLLYMDMSNNHFEGN----IASSIAEMKELRFLDLSKNNFSGEL---SAALLTSCFSLLWLGLSDNNFYGRIFPGYMN  497 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~g~i---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  497 (911)
                      +++|++|++++|.+++.    ++..+..+++|++|++++|.+++.-   -..++..+++|+.|++++|.+.+ ++..+..
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            44555555555544433    2223344455555555555543111   01122344555555555554443 2333444


Q ss_pred             CCCCCEEEccCcccc---ccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccc-hhhccCCCC
Q 043567          498 LTQLQYLYLENNKFS---GKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHRRL  573 (911)
Q Consensus       498 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L  573 (911)
                      +++|++|+++.....   +..+..+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            555555555532211   12334455566666666666432 3456666667777777777776654433 335667777


Q ss_pred             cEEEccCcccccccCccc-ccccccEEEccc-----------Cccccc-ccccccCCCCCCEEeCCCCcccccCchhhhc
Q 043567          574 QLFSVSENYLSGFMTTSF-NISSVEHLYLQK-----------NSLSGP-IPIALFRSSNLLTLDLRDNGFSGVIPHQINE  640 (911)
Q Consensus       574 ~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~-----------n~l~~~-~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~  640 (911)
                      +.|+++++...+.++... .+++|++|++++           |.+++. ++.....+++|++|+++.|++++..+..+..
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            777777332223333333 567777777773           455543 2333455788888888888888777777765


Q ss_pred             -CCCccEEEcc----CCccccc-----CChhhhcCCCCCeEEcCCCc--CCCCCCcccccccccccCCccccccccchhh
Q 043567          641 -CSNLRFLLLR----GNNLEGQ-----IPNQICQLTGLGMMDLSHNK--FNGSIPSCFTNITLWSVGNLDRYRLEHLTFV  708 (911)
Q Consensus       641 -l~~L~~L~L~----~N~l~~~-----ip~~l~~l~~L~~L~Ls~N~--l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l  708 (911)
                       +++|++|+++    .|.+++.     ++..+..+++|+.|++++|.  +++..+..+.                     
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~---------------------  459 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG---------------------  459 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH---------------------
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH---------------------
Confidence             8888888886    6777753     44456778899999997654  3322111111                     


Q ss_pred             hhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccc-cCCccccCCCC
Q 043567          709 ERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTG-EIPSEIGELQE  787 (911)
Q Consensus       709 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~i~~l~~  787 (911)
                                                                        ..+++|+.|++++|++++ .++..+..+++
T Consensus       460 --------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  489 (592)
T 3ogk_B          460 --------------------------------------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPN  489 (592)
T ss_dssp             --------------------------------------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred             --------------------------------------------------HhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence                                                              113468889999999886 45666688899


Q ss_pred             CCEEECCCCcCCcc-ccccccccCCCCEEeccCCcCcccCCCCC-CCCCCCCeEeccCC
Q 043567          788 IPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIPPKL-TELNFLSNFNVSYN  844 (911)
Q Consensus       788 L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~ls~N  844 (911)
                      |++|+|++|.+++. ++..+..+++|+.|+|++|++++.-...+ ..++.+....+..+
T Consensus       490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            99999999998766 45555678999999999999886533333 24555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.9e-28  Score=263.37  Aligned_cols=234  Identities=17%  Similarity=0.203  Sum_probs=173.7

Q ss_pred             CCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEE
Q 043567          522 SKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLY  600 (911)
Q Consensus       522 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~  600 (911)
                      .+.+++|++++|+++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+ .+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467888888888888 77888888888888888888888 78877877777777777777766 334434 555666666


Q ss_pred             cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567          601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g  680 (911)
                      +++|++.+.+|..+...               .++..+..+++|++|++++|+++ .+|..++.+++|++|+|++|++++
T Consensus       157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            66655555555544320               01122344778888888888877 777778888888888888888774


Q ss_pred             CCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCc
Q 043567          681 SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSN  760 (911)
Q Consensus       681 ~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  760 (911)
                       +|..+..                                                                        
T Consensus       221 -l~~~l~~------------------------------------------------------------------------  227 (328)
T 4fcg_A          221 -LGPAIHH------------------------------------------------------------------------  227 (328)
T ss_dssp             -CCGGGGG------------------------------------------------------------------------
T ss_pred             -Cchhhcc------------------------------------------------------------------------
Confidence             4443332                                                                        


Q ss_pred             CccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEe
Q 043567          761 LDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFN  840 (911)
Q Consensus       761 l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  840 (911)
                      +++|+.|++++|++.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.|||++|++.|.+|..+.+++.|+.++
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            23567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCcCe
Q 043567          841 VSYNNLS  847 (911)
Q Consensus       841 ls~N~l~  847 (911)
                      ++.|.+.
T Consensus       308 l~~~~~~  314 (328)
T 4fcg_A          308 VPPHLQA  314 (328)
T ss_dssp             CCGGGSC
T ss_pred             CCHHHHH
Confidence            8876554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.3e-27  Score=256.76  Aligned_cols=251  Identities=20%  Similarity=0.243  Sum_probs=185.0

Q ss_pred             CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc--ccchhhccCCCCcEEEcc
Q 043567          502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG--NIPVQLLNHRRLQLFSVS  579 (911)
Q Consensus       502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~ls  579 (911)
                      +.++.+++.++ .+|..+  .++|++|++++|+++...+..+..+++|++|++++|.++.  ..|..+..+         
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------   77 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT---------   77 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC---------
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc---------
Confidence            45666666665 444433  2466666666666664333345666666666666666552  223444444         


Q ss_pred             CcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccC
Q 043567          580 ENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQI  658 (911)
Q Consensus       580 ~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i  658 (911)
                                    ++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus        78 --------------~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           78 --------------TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             --------------SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             --------------cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence                          45555555555555 356667778888888888888876544 56788888888888888888888


Q ss_pred             ChhhhcCCCCCeEEcCCCcCCC-CCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCc
Q 043567          659 PNQICQLTGLGMMDLSHNKFNG-SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPF  737 (911)
Q Consensus       659 p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  737 (911)
                      |..+..+++|++|++++|.+++ .+|..+..                                                 
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------------------------------------  173 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------------------------------------------------  173 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------------------------
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhh-------------------------------------------------
Confidence            8888888888888888888775 34443332                                                 


Q ss_pred             ccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEec
Q 043567          738 TFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDL  817 (911)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL  817 (911)
                                             +++|+.||+++|++++..|..+..+++|++|+|++|++++..+..++.+++|+.||+
T Consensus       174 -----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          174 -----------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             -----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             -----------------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence                                   346788999999999888889999999999999999999888888999999999999


Q ss_pred             cCCcCcccCCCCCCCCC-CCCeEeccCCcCeecCC
Q 043567          818 SHNRLSGQIPPKLTELN-FLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       818 s~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP  851 (911)
                      ++|++++.+|..+..++ .|++|++++|++++..+
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            99999999999999884 89999999999988643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.4e-28  Score=267.35  Aligned_cols=183  Identities=14%  Similarity=0.143  Sum_probs=111.4

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEcc
Q 043567          500 QLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS  579 (911)
Q Consensus       500 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls  579 (911)
                      +|++|++++|++++..+..+..+++|++|++++|++++..|..++++++|++|++++|++++..+..+.++++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            56666666666665444456666666666666666665555666666666666666666664333346666666666666


Q ss_pred             CcccccccC-ccc-ccccccEEEcccCc-ccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc
Q 043567          580 ENYLSGFMT-TSF-NISSVEHLYLQKNS-LSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG  656 (911)
Q Consensus       580 ~n~l~~~~~-~~~-~~~~L~~L~Ls~n~-l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  656 (911)
                      +|.+++..+ ..+ .+++|++|++++|. +.+..|..+.++++|++|++++|++++..|..+..+++|++|++++|++..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            666665444 233 56666666666663 444445566666667777777777766666667777777777777776653


Q ss_pred             cCChhhhcCCCCCeEEcCCCcCCCCC
Q 043567          657 QIPNQICQLTGLGMMDLSHNKFNGSI  682 (911)
Q Consensus       657 ~ip~~l~~l~~L~~L~Ls~N~l~g~i  682 (911)
                      ..+..+..+++|+.|++++|++++..
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             chhhhhhhcccccEEECCCCcccccc
Confidence            22222334666667777666666433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.8e-28  Score=268.58  Aligned_cols=280  Identities=16%  Similarity=0.167  Sum_probs=237.3

Q ss_pred             CCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEE
Q 043567          497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLF  576 (911)
Q Consensus       497 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L  576 (911)
                      .++.....+.+++.++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+++..|..+.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4455566788888888 5676553  589999999999997777789999999999999999998888889999999999


Q ss_pred             EccCcccccccCccc-ccccccEEEcccCccccccc-ccccCCCCCCEEeCCCC-cccccCchhhhcCCCccEEEccCCc
Q 043567          577 SVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIP-IALFRSSNLLTLDLRDN-GFSGVIPHQINECSNLRFLLLRGNN  653 (911)
Q Consensus       577 ~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p-~~l~~~~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~  653 (911)
                      ++++|.+++..+..+ .+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..|..+..+++|++|++++|+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999998777656 89999999999999985333 37889999999999999 5776777889999999999999999


Q ss_pred             ccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCC
Q 043567          654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE  733 (911)
Q Consensus       654 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~  733 (911)
                      +++..|..+..+++|++|++++|+++ .+|..+.                                              
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~----------------------------------------------  218 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV----------------------------------------------  218 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCST-THHHHHH----------------------------------------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccc-cchhhhh----------------------------------------------
Confidence            99999999999999999999999975 3333211                                              


Q ss_pred             CCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCcccc---CCCCCCEEECCCCcCCc----cccccc
Q 043567          734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIG---ELQEIPVLNMSHNFLSE----SIPESF  806 (911)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~---~l~~L~~L~Ls~N~l~g----~ip~~l  806 (911)
                                               ..+++|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|+.+
T Consensus       219 -------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          219 -------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             -------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             -------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence                                     0134788899999999987665543   46778999999999987    489999


Q ss_pred             cccCCCCEEeccCCcCcccCCCC-CCCCCCCCeEeccCCcCeecCCC
Q 043567          807 SNLKMIESLDLSHNRLSGQIPPK-LTELNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       807 ~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  852 (911)
                      +++++|+.||+++|+++ .+|.. +..++.|++|++++|++++..|.
T Consensus       274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            99999999999999999 67766 58999999999999999998874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7.2e-28  Score=260.76  Aligned_cols=198  Identities=22%  Similarity=0.227  Sum_probs=134.8

Q ss_pred             ceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCccc--CCcCccCcCCCcEEEcc
Q 043567          478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGH--IPHWMGNLSYLEVLLMS  555 (911)
Q Consensus       478 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~  555 (911)
                      +.++.+++.++. +|..+  .++|++|++++|+++...+..+..+++|++|++++|+++..  .|..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            567888888764 44433  36899999999999955555688999999999999999833  36677789999999999


Q ss_pred             CcccccccchhhccCCCCcEEEccCcccccccC-ccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc-
Q 043567          556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMT-TSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG-  632 (911)
Q Consensus       556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~-~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~-  632 (911)
                      +|.++ .+|..+..+++|++|++++|.+++..+ ..+ .+++|++|++++|.+.+..|..+..+++|++|++++|.+++ 
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            99998 577778888888888888888876654 223 55555666665555555555555555555555555555554 


Q ss_pred             cCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          633 VIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       633 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      .+|..+..+++|++|++++|++++..|..+..+++|+.|+|++|+++
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence            34555555555555555555555444555555555555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2e-28  Score=265.63  Aligned_cols=206  Identities=20%  Similarity=0.213  Sum_probs=137.9

Q ss_pred             cCCCCcEEEccCcccccccCccc---ccccccEEEcccCcccccccccccCC-----CCCCEEeCCCCcccccCchhhhc
Q 043567          569 NHRRLQLFSVSENYLSGFMTTSF---NISSVEHLYLQKNSLSGPIPIALFRS-----SNLLTLDLRDNGFSGVIPHQINE  640 (911)
Q Consensus       569 ~~~~L~~L~ls~n~l~~~~~~~~---~~~~L~~L~Ls~n~l~~~~p~~l~~~-----~~L~~L~Ls~N~l~~~~p~~l~~  640 (911)
                      ++++|++|++++|.+++.+|..+   .+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            44555555555555555444431   455566666666666554 5555544     67777777777777666677777


Q ss_pred             CCCccEEEccCCccccc--CChhh--hcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccc
Q 043567          641 CSNLRFLLLRGNNLEGQ--IPNQI--CQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSI  716 (911)
Q Consensus       641 l~~L~~L~L~~N~l~~~--ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~  716 (911)
                      +++|++|++++|++.+.  +|..+  ..+++|++|+|++|++++ +|.....+                           
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~---------------------------  223 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSAL---------------------------  223 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHH---------------------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHH---------------------------
Confidence            77777777777777654  23344  677778888888777762 11100000                           


Q ss_pred             ccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC-ccccCCCCCCEEECCC
Q 043567          717 GIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP-SEIGELQEIPVLNMSH  795 (911)
Q Consensus       717 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~i~~l~~L~~L~Ls~  795 (911)
                                                               ...++.|+.||+++|++++.+| ..+..+++|++|+|++
T Consensus       224 -----------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~  262 (312)
T 1wwl_A          224 -----------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF  262 (312)
T ss_dssp             -----------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred             -----------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence                                                     0113467778888888887775 4566678888888888


Q ss_pred             CcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567          796 NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       796 N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  849 (911)
                      |+++ .+|..+.  ++|++|||++|++++. |. +..++.|++|++++|++++.
T Consensus       263 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          263 TGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            8888 7787777  7888888888888876 65 88888888888888888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.6e-28  Score=265.34  Aligned_cols=265  Identities=18%  Similarity=0.184  Sum_probs=188.9

Q ss_pred             EEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCccc
Q 043567          504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL  583 (911)
Q Consensus       504 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l  583 (911)
                      .+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            3344444433333333344455555555555554444455555555555555555554333  55555666666666655


Q ss_pred             ccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh
Q 043567          584 SGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC  663 (911)
Q Consensus       584 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~  663 (911)
                      ++..+    .++|++|++++|++++..+..   +++|++|++++|++++..|..++.+++|++|++++|++++..|..+.
T Consensus        93 ~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           93 QELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             ccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            54332    366777777777776554433   46788899999988887777888889999999999999887777774


Q ss_pred             -cCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccc
Q 043567          664 -QLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYL  742 (911)
Q Consensus       664 -~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  742 (911)
                       .+++|++|+|++|.+++. |..                                                         
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------------------  187 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-KGQ---------------------------------------------------------  187 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-ECC---------------------------------------------------------
T ss_pred             hccCcCCEEECCCCcCccc-ccc---------------------------------------------------------
Confidence             788999999999987632 110                                                         


Q ss_pred             eeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcC
Q 043567          743 VEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL  822 (911)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l  822 (911)
                                      ..++.|+.||+++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.||+++|++
T Consensus       188 ----------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          188 ----------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             ----------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred             ----------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence                            013578889999999995 5666999999999999999998 5788899999999999999999


Q ss_pred             c-ccCCCCCCCCCCCCeEecc-CCcCeecCCCC
Q 043567          823 S-GQIPPKLTELNFLSNFNVS-YNNLSGLIPDK  853 (911)
Q Consensus       823 ~-g~ip~~l~~l~~L~~L~ls-~N~l~g~iP~~  853 (911)
                      + +.+|..+..++.|++++++ .+.++|..|..
T Consensus       250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             cCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            9 8888899999999999999 66788877754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.3e-26  Score=258.99  Aligned_cols=247  Identities=21%  Similarity=0.183  Sum_probs=160.7

Q ss_pred             CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCc
Q 043567          502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN  581 (911)
Q Consensus       502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n  581 (911)
                      ..++.++..++ .+|..+  .+++++|++++|++++..|..|.++++|+.|++++|.+++..|..+.++           
T Consensus        57 ~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----------  122 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-----------  122 (452)
T ss_dssp             CEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred             cEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc-----------
Confidence            44555555554 344333  2455555555555555555555555555555555555554444444444           


Q ss_pred             ccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-h
Q 043567          582 YLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-N  660 (911)
Q Consensus       582 ~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~  660 (911)
                                  ++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+.++++|++|++++|+..+.+| .
T Consensus       123 ------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  190 (452)
T 3zyi_A          123 ------------ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG  190 (452)
T ss_dssp             ------------TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             ------------ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence                        455555555555554444456666677777777777765555566777777777777744433443 3


Q ss_pred             hhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccc
Q 043567          661 QICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD  740 (911)
Q Consensus       661 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  740 (911)
                      .+..+++|+.|+|++|++++ +|. +                                                      
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~-~~~-~------------------------------------------------------  214 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKD-MPN-L------------------------------------------------------  214 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSS-CCC-C------------------------------------------------------
T ss_pred             hccCCCCCCEEECCCCcccc-ccc-c------------------------------------------------------
Confidence            56677777777777777763 221 1                                                      


Q ss_pred             cceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCC
Q 043567          741 YLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHN  820 (911)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  820 (911)
                                        ..+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|
T Consensus       215 ------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          215 ------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             ------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence                              11346777888888888777888888888888888888888888888888888888888888


Q ss_pred             cCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          821 RLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       821 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      ++++..+..+..++.|++|++++|++..
T Consensus       277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          277 NLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cCCccChHHhccccCCCEEEccCCCcCC
Confidence            8887777777888888888888887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=8.7e-26  Score=257.41  Aligned_cols=248  Identities=22%  Similarity=0.217  Sum_probs=158.0

Q ss_pred             CCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccC
Q 043567          501 LQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE  580 (911)
Q Consensus       501 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~  580 (911)
                      .+.++.++..++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..+.++++|       
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L-------  114 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL-------  114 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC-------
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC-------
Confidence            345555555555 4444332  455566666666555555555555555555555555554444445555444       


Q ss_pred             cccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-
Q 043567          581 NYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-  659 (911)
Q Consensus       581 n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-  659 (911)
                                      ++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+..+.++ 
T Consensus       115 ----------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          115 ----------------NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             ----------------CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             ----------------CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence                            455555555543334455666666666666666665555566667777777777644333333 


Q ss_pred             hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccc
Q 043567          660 NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTF  739 (911)
Q Consensus       660 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  739 (911)
                      ..+..+++|+.|+|++|+++ .+|. +                                                     
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~-----------------------------------------------------  203 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLR-EIPN-L-----------------------------------------------------  203 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCS-SCCC-C-----------------------------------------------------
T ss_pred             chhhcccccCeecCCCCcCc-cccc-c-----------------------------------------------------
Confidence            35667777777777777765 2331 1                                                     


Q ss_pred             ccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccC
Q 043567          740 DYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH  819 (911)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  819 (911)
                                         ..+++|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++
T Consensus       204 -------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          204 -------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             -------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence                               1134567788888888777777788888888888888888877777788888888888888


Q ss_pred             CcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          820 NRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       820 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      |++++..+..+..++.|++|+|++|++..
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCCccChhHhccccCCCEEEcCCCCccC
Confidence            88887777777778888888888887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.6e-28  Score=262.69  Aligned_cols=254  Identities=20%  Similarity=0.196  Sum_probs=166.3

Q ss_pred             hcccccceeeccCcccccccCCCCCCCCCCCEEEccCcccc-cccccccc-------CCCCCcEEECcCCcCcccCCcCc
Q 043567          472 TSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFS-GKIEEGLL-------KSKKLVELRMSSNMLSGHIPHWM  543 (911)
Q Consensus       472 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l  543 (911)
                      ...++|+.+++++|.+  .+|..+...  |+.|++++|+++ +.+|..+.       .+++|++|++++|++++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3455666777777666  444433322  666666666663 33444333       45566666666666665555544


Q ss_pred             --cCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCC
Q 043567          544 --GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLL  621 (911)
Q Consensus       544 --~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~  621 (911)
                        +.+++|++|++++|++++. |..+..+...                  .+++|++|++++|++++..|..++.+++|+
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~------------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQW------------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT------------------CCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHh------------------hcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence              5555555555555555544 4444333000                  015666666677777666667777777888


Q ss_pred             EEeCCCCccccc--Cchhh--hcCCCccEEEccCCcccc--cCC-hhhhcCCCCCeEEcCCCcCCCCCCccccccccccc
Q 043567          622 TLDLRDNGFSGV--IPHQI--NECSNLRFLLLRGNNLEG--QIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV  694 (911)
Q Consensus       622 ~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~L~~N~l~~--~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~  694 (911)
                      +|++++|++.+.  +|..+  +.+++|++|++++|++++  .++ ..+..+++|+.|+|++|++++.+|....       
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------  249 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-------  249 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-------
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh-------
Confidence            888888877654  23344  777888888888888873  233 3335678888888888888876542110       


Q ss_pred             CCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcc
Q 043567          695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKL  774 (911)
Q Consensus       695 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  774 (911)
                                                                                      ..++.|+.||+++|++
T Consensus       250 ----------------------------------------------------------------~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          250 ----------------------------------------------------------------DWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             ----------------------------------------------------------------CCCTTCCEEECTTSCC
T ss_pred             ----------------------------------------------------------------hhcCCCCEEECCCCcc
Confidence                                                                            0134678899999999


Q ss_pred             cccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          775 TGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       775 ~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                      + .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          266 K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            8 8888777  8899999999999876 66 8899999999999999886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.6e-26  Score=247.31  Aligned_cols=254  Identities=18%  Similarity=0.214  Sum_probs=154.9

Q ss_pred             CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCc
Q 043567          502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSEN  581 (911)
Q Consensus       502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n  581 (911)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34444444444 233322  345555555555555444445555555555555555555444444444444444444444


Q ss_pred             ccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChh
Q 043567          582 YLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQ  661 (911)
Q Consensus       582 ~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~  661 (911)
                      ..                      +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus        91 ~~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           91 AQ----------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             TT----------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CC----------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence            30                      33333455566666777777777766666666677777777777777776555555


Q ss_pred             hhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccc
Q 043567          662 ICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDY  741 (911)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  741 (911)
                      +..+++|+.|++++|++++..+..+..                                                     
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------  175 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERAFRG-----------------------------------------------------  175 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTT-----------------------------------------------------
T ss_pred             hccCCCccEEECCCCcccccCHHHhcC-----------------------------------------------------
Confidence            667777777777777766433322222                                                     


Q ss_pred             ceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCc
Q 043567          742 LVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNR  821 (911)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~  821 (911)
                                         ++.|+.|++++|++++..|..++.+++|+.|++++|++++..|..++.+++|+.|++++|.
T Consensus       176 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          176 -------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             -------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence                               2356677788888877777788888888888888888887777778888888888888888


Q ss_pred             CcccCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567          822 LSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK  853 (911)
Q Consensus       822 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  853 (911)
                      +++..+.. .-...++.+..+.|.+.+..|..
T Consensus       237 ~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          237 WVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             EECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            87654421 11123445557778888877754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.5e-29  Score=298.93  Aligned_cols=408  Identities=15%  Similarity=0.116  Sum_probs=228.8

Q ss_pred             cccCCCCCCEEeCCCCCCCcccC---cc--------cccccCCCCCCcEEeCCCCCCCccchhhhc-CCCCCCEEEcCCc
Q 043567          124 LFHPFEELQSLDLSNNSFEGVYE---NQ--------AYDTLGSLKRLKILNLGYNYFDDSIFLYLN-ALTSLTTLILREN  191 (911)
Q Consensus       124 ~~~~l~~L~~L~Ls~n~l~~~~~---~~--------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n  191 (911)
                      .+..+++|++|+++++.......   ..        +......+++|++|++++|.+++..+..+. .+++|++|+|++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            46778999999999986432211   00        001124577888888888888877777765 6888888888888


Q ss_pred             -ccCCccChhhhcCCCCCCEEeCCCCCCCCccCc---ccccCCCCCCEEeccCCc--CCCC-CCcccCCCCCCcEEEccC
Q 043567          192 -NIQGSRTKQGLSKLKNLEALDLSSNFINGSLES---QGICELKNLFVLNLEKNN--IEDH-LPNCLNNMTRLKVLDISF  264 (911)
Q Consensus       192 -~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~Ls~  264 (911)
                       .+.+......+.++++|++|++++|.+++..+.   .....+++|++|++++|.  +... ++..+..+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             444322223445788888888888876643221   122366788888888776  2211 111223467788888877


Q ss_pred             CcCCccCcccccCCCCCCeeeccCCc-------CCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECC
Q 043567          265 NQLSGSFPSIISNLTSLEYLALFDNN-------FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLP  337 (911)
Q Consensus       265 n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~  337 (911)
                      |...+.+|..+..+++|++|+++.+.       +.+ ++ ..+.++++|+.+.                        .+.
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~-~~l~~~~~L~~Ls------------------------~~~  274 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LS-VALSGCKELRCLS------------------------GFW  274 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HH-HHHHTCTTCCEEE------------------------CCB
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HH-HHHhcCCCccccc------------------------CCc
Confidence            73222366677777778877765443       111 11 1344555555441                        222


Q ss_pred             CCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCC-CCCCCCccEEEccC------
Q 043567          338 NCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP-DDKHDFLHHLDISS------  410 (911)
Q Consensus       338 ~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~ls~------  410 (911)
                      +.....++..+..+++|++|++++|.+++.....+...+++|++|++++| +....... ...+++|++|++++      
T Consensus       275 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~  353 (594)
T 2p1m_B          275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM  353 (594)
T ss_dssp             TCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred             ccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc
Confidence            22223455555566777777777777654434444456677777777766 32110000 11356666666632      


Q ss_pred             ---CcCCcCCChhHHHhccCCcEEEcccCccccccchhhh-cCCCCcEEecc--C----cccCCccc-----HHHHhccc
Q 043567          411 ---NNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA-EMKELRFLDLS--K----NNFSGELS-----AALLTSCF  475 (911)
Q Consensus       411 ---n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----n~l~g~i~-----~~~~~~~~  475 (911)
                         +.+++.....+...+++|++|.+..|.+++..+..+. .+++|++|+++  +    +.++ ..|     ..++..++
T Consensus       354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~  432 (594)
T 2p1m_B          354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCK  432 (594)
T ss_dssp             SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCT
T ss_pred             ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCC
Confidence               3333322233333467777777777777665555554 46777777777  3    3443 111     11234556


Q ss_pred             ccceeeccCcccccccCCCCCC-CCCCCEEEccCccccccccccc-cCCCCCcEEECcCCcCcccCCc-CccCcCCCcEE
Q 043567          476 SLLWLGLSDNNFYGRIFPGYMN-LTQLQYLYLENNKFSGKIEEGL-LKSKKLVELRMSSNMLSGHIPH-WMGNLSYLEVL  552 (911)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L  552 (911)
                      +|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. .+..+++|+.|
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL  511 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence            666666654 444433333333 5566666666666654433333 4456666666666665433222 33345566666


Q ss_pred             EccCcccc
Q 043567          553 LMSKNFFE  560 (911)
Q Consensus       553 ~L~~n~l~  560 (911)
                      ++++|.++
T Consensus       512 ~l~~~~~~  519 (594)
T 2p1m_B          512 WMSSCSVS  519 (594)
T ss_dssp             EEESSCCB
T ss_pred             eeeCCCCC
Confidence            66666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.1e-26  Score=246.44  Aligned_cols=210  Identities=22%  Similarity=0.220  Sum_probs=178.4

Q ss_pred             CCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCc-ccccCchhhhcCCCccEEE
Q 043567          571 RRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNG-FSGVIPHQINECSNLRFLL  648 (911)
Q Consensus       571 ~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~  648 (911)
                      +++++|++++|.+++..+..+ .+++|++|++++|.+++..|..+..+++|++|++++|. +.+..|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            355555555555555554444 56677777777777776678888999999999999998 8777688999999999999


Q ss_pred             ccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCC
Q 043567          649 LRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQ  728 (911)
Q Consensus       649 L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~  728 (911)
                      +++|++++..|..+..+++|++|++++|++++..+..+..                                        
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------  151 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------------------------------  151 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------------------------------
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc----------------------------------------
Confidence            9999999888999999999999999999998655444432                                        


Q ss_pred             CCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccc
Q 043567          729 LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSN  808 (911)
Q Consensus       729 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~  808 (911)
                                                      +++|+.|++++|++++..+..+..+++|++|+|++|++++..|..+++
T Consensus       152 --------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  199 (285)
T 1ozn_A          152 --------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (285)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             --------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence                                            347888999999999777778999999999999999999999999999


Q ss_pred             cCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567          809 LKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       809 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  852 (911)
                      +++|+.||+++|++++..|..+..++.|++|++++|++.+..+.
T Consensus       200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            99999999999999987777799999999999999999987664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=8.9e-28  Score=261.09  Aligned_cols=249  Identities=21%  Similarity=0.204  Sum_probs=177.3

Q ss_pred             CCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEE
Q 043567          498 LTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFS  577 (911)
Q Consensus       498 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~  577 (911)
                      +++|++|++++|++++..|..+..+++|++|++++|++++..+  +..+++|++|++++|.+++. +    ..++|+.|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEE
Confidence            3445555555555554444455555555555555555554333  55555555555555555532 1    225666666


Q ss_pred             ccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhh-hcCCCccEEEccCCcccc
Q 043567          578 VSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI-NECSNLRFLLLRGNNLEG  656 (911)
Q Consensus       578 ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~  656 (911)
                      +++|.+++..+..  +++|++|++++|++++..|..+..+++|++|++++|++++..|..+ ..+++|++|++++|++++
T Consensus       106 l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            6666666554443  4667888888888887777778888888889999888887777766 478899999999999885


Q ss_pred             cCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCC
Q 043567          657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP  736 (911)
Q Consensus       657 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~  736 (911)
                      . |. ...+++|+.|+|++|++++ +|..+..                                                
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~------------------------------------------------  212 (317)
T 3o53_A          184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS------------------------------------------------  212 (317)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGG------------------------------------------------
T ss_pred             c-cc-ccccccCCEEECCCCcCCc-chhhhcc------------------------------------------------
Confidence            5 32 3358899999999999874 3333332                                                


Q ss_pred             cccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCC-ccccccccccCCCCEE
Q 043567          737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS-ESIPESFSNLKMIESL  815 (911)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L  815 (911)
                                              +++|+.||+++|+++ .+|..+..+++|+.|++++|.++ +.+|..++.+++|+.|
T Consensus       213 ------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          213 ------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             ------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             ------------------------cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence                                    246788999999999 68888999999999999999999 8899999999999999


Q ss_pred             ecc-CCcCcccCCCCCC
Q 043567          816 DLS-HNRLSGQIPPKLT  831 (911)
Q Consensus       816 dLs-~N~l~g~ip~~l~  831 (911)
                      +++ .+.++|..|....
T Consensus       268 ~l~~~~~l~~~~~~~~~  284 (317)
T 3o53_A          268 AKQTVKKLTGQNEEECT  284 (317)
T ss_dssp             HHHHHHHHHSSSSCCCS
T ss_pred             ECCCchhccCCchhccC
Confidence            999 5678887775443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=253.71  Aligned_cols=199  Identities=20%  Similarity=0.151  Sum_probs=140.3

Q ss_pred             ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEcc
Q 043567          476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS  555 (911)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  555 (911)
                      ....++.++..++ .+|..+.  ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3567788887776 4555544  689999999999998888999999999999999999998888899999999999999


Q ss_pred             CcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccc-cccCCCCCCEEeCCCCccccc
Q 043567          556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNGFSGV  633 (911)
Q Consensus       556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~l~~~  633 (911)
                      +|++++..+..+..+++|++|++++|.+....+..+ .+++|++|++++|+..+.++. .+.++++|++|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999996666678888888888888888876666555 566666666666443333333 4555555666666665555 3


Q ss_pred             CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      +| .+..+++|++|+|++|++++..|..+..+++|+.|+|++|+++
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence            33 2445555555555555555444555555555544444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.6e-25  Score=254.41  Aligned_cols=200  Identities=16%  Similarity=0.134  Sum_probs=143.1

Q ss_pred             ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEcc
Q 043567          476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS  555 (911)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  555 (911)
                      ....++.++..++. +|..+.  +++++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35677888877764 555443  689999999999999889999999999999999999998888999999999999999


Q ss_pred             CcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccc-cccCCCCCCEEeCCCCccccc
Q 043567          556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNGFSGV  633 (911)
Q Consensus       556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~l~~~  633 (911)
                      +|++++..+..+..+++|++|++++|.+....+..+ .+++|++|++++|+..+.++. .+.++++|++|++++|++++ 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            999997666678888888888888888876666555 666666666666444334433 35555666666666666653 


Q ss_pred             CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567          634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g  680 (911)
                      +| .+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence            23 34555555555555555555555555555555555555554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.2e-28  Score=289.38  Aligned_cols=396  Identities=15%  Similarity=0.054  Sum_probs=183.6

Q ss_pred             cCCcccEEEccCCccccccCCCCC-CCCCccEEEccCC-cCCcCCChhHHHhccCCcEEEcccCccccccchhhh----c
Q 043567          375 NNTKLEVLLLTNNSFTGNLQLPDD-KHDFLHHLDISSN-NFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIA----E  448 (911)
Q Consensus       375 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~  448 (911)
                      .+++|++|++++|.+++....... .+++|++|++++| .++......+...+++|++|++++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            344455555555444332111111 2445555555555 222211222222356666666666665544433333    3


Q ss_pred             CCCCcEEeccCcc--cCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCc-------cccccccccc
Q 043567          449 MKELRFLDLSKNN--FSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN-------KFSGKIEEGL  519 (911)
Q Consensus       449 l~~L~~L~Ls~n~--l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~p~~l  519 (911)
                      +++|++|++++|.  ++......+...+++|+.|++++|...+.++..+..+++|++|+++.+       .+.+ ++..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence            4466666666654  221111222334556666666655222224444455556666664333       2332 23345


Q ss_pred             cCCCCCcEE-ECcCCcCcccCCcCccCcCCCcEEEccCcccccccc-hhhccCCCCcEEEccCccccc-ccCccc-cccc
Q 043567          520 LKSKKLVEL-RMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP-VQLLNHRRLQLFSVSENYLSG-FMTTSF-NISS  595 (911)
Q Consensus       520 ~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~ls~n~l~~-~~~~~~-~~~~  595 (911)
                      ..+++|+.+ .+.+... +.++..+..+++|+.|++++|.+++... ..+..+++|+.|++++| +.. .++... .+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            556666666 2322221 2334444455666666666666543322 22345566666666655 221 111111 3555


Q ss_pred             ccEEEccc---------Cccccccccccc-CCCCCCEEeCCCCcccccCchhhh-cCCCccEEEcc--C----Ccccc--
Q 043567          596 VEHLYLQK---------NSLSGPIPIALF-RSSNLLTLDLRDNGFSGVIPHQIN-ECSNLRFLLLR--G----NNLEG--  656 (911)
Q Consensus       596 L~~L~Ls~---------n~l~~~~p~~l~-~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~--~----N~l~~--  656 (911)
                      |++|++++         +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|++|+++  +    |.+++  
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            66665522         333332222222 255566665555555544444443 35556666665  2    33331  


Q ss_pred             ---cCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCC
Q 043567          657 ---QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEE  733 (911)
Q Consensus       657 ---~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~  733 (911)
                         .++..+..+++|+.|+|++ .+++..+..+.                                              
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~----------------------------------------------  452 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG----------------------------------------------  452 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH----------------------------------------------
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH----------------------------------------------
Confidence               1112244455556655543 22211111100                                              


Q ss_pred             CCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccc-cCCCCCCEEECCCCcCCccccc-cccccCC
Q 043567          734 RGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEI-GELQEIPVLNMSHNFLSESIPE-SFSNLKM  811 (911)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i-~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~  811 (911)
                                               ..+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++
T Consensus       453 -------------------------~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          453 -------------------------TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             -------------------------HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             -------------------------HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence                                     012356667777777665544444 5566777777777776554443 3334667


Q ss_pred             CCEEeccCCcCcccCCCCC-CCCCCCCeEeccCCc
Q 043567          812 IESLDLSHNRLSGQIPPKL-TELNFLSNFNVSYNN  845 (911)
Q Consensus       812 L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~ls~N~  845 (911)
                      |+.|++++|+++..-...+ ..++.|+...+..+.
T Consensus       508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            7777777776653322223 334445444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=5.3e-25  Score=258.08  Aligned_cols=242  Identities=24%  Similarity=0.269  Sum_probs=146.1

Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEc
Q 043567          499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV  578 (911)
Q Consensus       499 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l  578 (911)
                      ++|++|++++|+++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|++++|.+++ +|.   .+++|+.|++
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence            45555555555555 2333   3455555555555555 2333   34555555555555553 333   3455556666


Q ss_pred             cCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccC
Q 043567          579 SENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI  658 (911)
Q Consensus       579 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i  658 (911)
                      ++|++++..+.   +++|++|++++|++++ +|.   ...+|+.|++++|++++ +|   ..+++|+.|++++|.+++ +
T Consensus       129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l  196 (622)
T 3g06_A          129 FGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L  196 (622)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred             CCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence            66655543221   3566666666666653 333   23466777777777764 45   345667777777777763 4


Q ss_pred             ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcc
Q 043567          659 PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFT  738 (911)
Q Consensus       659 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  738 (911)
                      |..   +++|+.|++++|.++ .+|..                                                     
T Consensus       197 ~~~---~~~L~~L~L~~N~l~-~l~~~-----------------------------------------------------  219 (622)
T 3g06_A          197 PTL---PSELYKLWAYNNRLT-SLPAL-----------------------------------------------------  219 (622)
T ss_dssp             CCC---CTTCCEEECCSSCCS-SCCCC-----------------------------------------------------
T ss_pred             CCc---cchhhEEECcCCccc-ccCCC-----------------------------------------------------
Confidence            432   356777777777665 22211                                                     


Q ss_pred             cccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEecc
Q 043567          739 FDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS  818 (911)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  818 (911)
                                            +++|+.|++++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|+
T Consensus       220 ----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          220 ----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             ----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             ----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence                                  1245667777777774 55   44567777888888777 4555   45677778888


Q ss_pred             CCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567          819 HNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       819 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  852 (911)
                      +|+|+ .||..+.+++.|++|+|++|+++|.+|.
T Consensus       270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            88777 6777777777788888888888777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1e-26  Score=267.47  Aligned_cols=234  Identities=20%  Similarity=0.207  Sum_probs=162.2

Q ss_pred             CCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEccc
Q 043567          524 KLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQK  603 (911)
Q Consensus       524 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~  603 (911)
                      +|++|++++|.+++..|..|+.+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+    .++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence            55555555555555545555555555556665555554444  5555666666666665554433    25677777777


Q ss_pred             CcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh-cCCCCCeEEcCCCcCCCCC
Q 043567          604 NSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC-QLTGLGMMDLSHNKFNGSI  682 (911)
Q Consensus       604 n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~g~i  682 (911)
                      |.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++..
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            777655443   246788888888888877777788888888888888888887777776 6888888888888876431


Q ss_pred             CcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCc
Q 043567          683 PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD  762 (911)
Q Consensus       683 p~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  762 (911)
                      +.                                                                          ..++
T Consensus       186 ~~--------------------------------------------------------------------------~~l~  191 (487)
T 3oja_A          186 GQ--------------------------------------------------------------------------VVFA  191 (487)
T ss_dssp             CC--------------------------------------------------------------------------CCCT
T ss_pred             cc--------------------------------------------------------------------------ccCC
Confidence            10                                                                          0134


Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCc-ccCCCCCCCCCCCCeEec
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS-GQIPPKLTELNFLSNFNV  841 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~l  841 (911)
                      .|+.|||++|++++ +|..++.+++|+.|+|++|++++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.+++
T Consensus       192 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            67778888888885 44457888888888888888885 6777888888888888888887 677777777777777777


Q ss_pred             c
Q 043567          842 S  842 (911)
Q Consensus       842 s  842 (911)
                      +
T Consensus       270 ~  270 (487)
T 3oja_A          270 Q  270 (487)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.6e-25  Score=262.54  Aligned_cols=268  Identities=26%  Similarity=0.336  Sum_probs=179.3

Q ss_pred             CCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEc
Q 043567          427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYL  506 (911)
Q Consensus       427 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  506 (911)
                      +++.|++++|.++ .+|..+.  ++|++|++++|+++ .+|.    .                        +++|++|+|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~------------------------l~~L~~L~L   88 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----L------------------------PPELRTLEV   88 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----C------------------------CTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----c------------------------CCCCCEEEc
Confidence            4666666666666 4454443  56666666666665 3443    2                        345555555


Q ss_pred             cCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccc
Q 043567          507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGF  586 (911)
Q Consensus       507 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~  586 (911)
                      ++|+++ .+|.   .+++|++|++++|++++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++.
T Consensus        89 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A           89 SGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred             CCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence            555554 2333   34555555555555553 232   34555666666666553 4432   25666666666666653


Q ss_pred             cCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCC
Q 043567          587 MTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLT  666 (911)
Q Consensus       587 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~  666 (911)
                      ..   .+++|+.|++++|++++ +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..   ++
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~  221 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS  221 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred             CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CC
Confidence            22   24567777777777774 55   345788888888888884 4543   468888999999888 45543   47


Q ss_pred             CCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeee
Q 043567          667 GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVE  746 (911)
Q Consensus       667 ~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  746 (911)
                      +|+.|+|++|++++ +|..                                                             
T Consensus       222 ~L~~L~Ls~N~L~~-lp~~-------------------------------------------------------------  239 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LPVL-------------------------------------------------------------  239 (622)
T ss_dssp             TCCEEECCSSCCSC-CCCC-------------------------------------------------------------
T ss_pred             CCCEEEccCCccCc-CCCC-------------------------------------------------------------
Confidence            88999999998874 4411                                                             


Q ss_pred             eeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccC
Q 043567          747 FVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQI  826 (911)
Q Consensus       747 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i  826 (911)
                                    +++|+.|++++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..++++++|+.|+|++|++++.+
T Consensus       240 --------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          240 --------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             --------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred             --------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence                          235778999999998 6776   5788999999999998 78889999999999999999999998


Q ss_pred             CCCCCCCC
Q 043567          827 PPKLTELN  834 (911)
Q Consensus       827 p~~l~~l~  834 (911)
                      |..+..++
T Consensus       301 ~~~l~~L~  308 (622)
T 3g06_A          301 LQALREIT  308 (622)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            88776655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7.2e-26  Score=260.42  Aligned_cols=237  Identities=20%  Similarity=0.189  Sum_probs=194.2

Q ss_pred             CCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEE
Q 043567          497 NLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLF  576 (911)
Q Consensus       497 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L  576 (911)
                      .+++|++|+|++|.+++..|..+..+++|++|+|++|.+++..|  ++.+++|++|++++|.+++..+     .++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            44577777777777777667777777888888888888776555  7778888888888887774322     3788888


Q ss_pred             EccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhh-cCCCccEEEccCCccc
Q 043567          577 SVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQIN-ECSNLRFLLLRGNNLE  655 (911)
Q Consensus       577 ~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~  655 (911)
                      ++++|.+++..+..  +++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.++
T Consensus       105 ~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            88888888776653  57899999999999988888999999999999999999998888886 7999999999999998


Q ss_pred             ccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCC
Q 043567          656 GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERG  735 (911)
Q Consensus       656 ~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~  735 (911)
                      +..+  ...+++|+.|+|++|.+++. |+.+..                                               
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~-----------------------------------------------  212 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQS-----------------------------------------------  212 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEE-CGGGGG-----------------------------------------------
T ss_pred             cccc--cccCCCCCEEECCCCCCCCC-CHhHcC-----------------------------------------------
Confidence            7633  34689999999999999864 333432                                               


Q ss_pred             CcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCC-ccccccccccCCCCE
Q 043567          736 PFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLS-ESIPESFSNLKMIES  814 (911)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~  814 (911)
                                               ++.|+.||+++|++++ +|..++.+++|+.|++++|.++ +.+|..++.++.|+.
T Consensus       213 -------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~  266 (487)
T 3oja_A          213 -------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (487)
T ss_dssp             -------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred             -------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence                                     2467889999999995 8888999999999999999998 789999999999999


Q ss_pred             Eecc
Q 043567          815 LDLS  818 (911)
Q Consensus       815 LdLs  818 (911)
                      ++++
T Consensus       267 l~~~  270 (487)
T 3oja_A          267 VAKQ  270 (487)
T ss_dssp             HHHH
T ss_pred             Eecc
Confidence            9987

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8e-24  Score=225.21  Aligned_cols=228  Identities=21%  Similarity=0.212  Sum_probs=132.3

Q ss_pred             EEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcc
Q 043567          527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSL  606 (911)
Q Consensus       527 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l  606 (911)
                      .++..+..+. .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+                  
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------   69 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------------   69 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT------------------
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH------------------
Confidence            3455555554 4554443  356666666666665545456666666666665555554444                  


Q ss_pred             cccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC-CCCcc
Q 043567          607 SGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG-SIPSC  685 (911)
Q Consensus       607 ~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~  685 (911)
                           ..+..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++ .+|..
T Consensus        70 -----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           70 -----GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             -----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             -----HHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence                 344445555555555555554444555555555555555555554444445555555555555555543 23433


Q ss_pred             cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCcccc
Q 043567          686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV  765 (911)
Q Consensus       686 ~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  765 (911)
                      +..+                                                                        ++|+
T Consensus       145 ~~~l------------------------------------------------------------------------~~L~  152 (276)
T 2z62_A          145 FSNL------------------------------------------------------------------------TNLE  152 (276)
T ss_dssp             GGGC------------------------------------------------------------------------TTCC
T ss_pred             hccC------------------------------------------------------------------------CCCC
Confidence            3221                                                                        2445


Q ss_pred             EEEcccCcccccCCccccCCCCCC----EEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567          766 GLDLSCNKLTGEIPSEIGELQEIP----VLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV  841 (911)
Q Consensus       766 ~LdLs~N~l~g~ip~~i~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  841 (911)
                      .|++++|++++..+..+..+++|+    .|++++|++++..|..+. ..+|+.||+++|++++..+..+..++.|++|++
T Consensus       153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence            556666666555555555555555    677777777755554444 346888888888888666666777888888888


Q ss_pred             cCCcCeecCCCC
Q 043567          842 SYNNLSGLIPDK  853 (911)
Q Consensus       842 s~N~l~g~iP~~  853 (911)
                      ++|++++..|.-
T Consensus       232 ~~N~~~c~c~~l  243 (276)
T 2z62_A          232 HTNPWDCSCPRI  243 (276)
T ss_dssp             CSSCBCCCTTTT
T ss_pred             cCCcccccCCch
Confidence            888888777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.3e-23  Score=221.71  Aligned_cols=229  Identities=20%  Similarity=0.163  Sum_probs=165.4

Q ss_pred             EEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcc
Q 043567          503 YLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY  582 (911)
Q Consensus       503 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~  582 (911)
                      ..+..+..++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4555566665 566655  3689999999999998877799999999999999999997777788888888887777777


Q ss_pred             cccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc-cCChh
Q 043567          583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG-QIPNQ  661 (911)
Q Consensus       583 l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~ip~~  661 (911)
                      +++..+                       ..+.++++|++|++++|++.+..+..++.+++|++|++++|++++ .+|..
T Consensus        88 l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           88 IQSLAL-----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             CCEECT-----------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             cCccCh-----------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence            665544                       344555566666666666665555456666677777777777665 35677


Q ss_pred             hhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCccccc
Q 043567          662 ICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDY  741 (911)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  741 (911)
                      +..+++|+.|++++|++++..+..+..+..                                                  
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--------------------------------------------------  174 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--------------------------------------------------  174 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHT--------------------------------------------------
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHhhhhhh--------------------------------------------------
Confidence            777777777777777776554444443320                                                  


Q ss_pred             ceeeeeeeccceeeccCCcCcccc-EEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCC
Q 043567          742 LVEVEFVTKNRYEVYNGSNLDYMV-GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHN  820 (911)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  820 (911)
                                         ++.+. .|++++|++++..+..+. ..+|+.|+|++|++++..+..++++++|+.|++++|
T Consensus       175 -------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          175 -------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             -------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             -------------------ccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence                               11122 588899998855554444 458999999999999777777889999999999999


Q ss_pred             cCcccCC
Q 043567          821 RLSGQIP  827 (911)
Q Consensus       821 ~l~g~ip  827 (911)
                      ++++..|
T Consensus       235 ~~~c~c~  241 (276)
T 2z62_A          235 PWDCSCP  241 (276)
T ss_dssp             CBCCCTT
T ss_pred             cccccCC
Confidence            9987554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3e-23  Score=219.83  Aligned_cols=215  Identities=23%  Similarity=0.287  Sum_probs=167.5

Q ss_pred             CCCccccceeecCCCCcEEEEecCCCCcccccccccccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCC
Q 043567           76 SDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGS  155 (911)
Q Consensus        76 ~~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  155 (911)
                      .++|.|.|+.|.- .+.++.+++++..+              ..+.. .+  .+++++|++++|.+++..+    ..+.+
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l--------------~~ip~-~~--~~~l~~L~l~~n~l~~~~~----~~~~~   59 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKL--------------TAIPS-NI--PADTKKLDLQSNKLSSLPS----KAFHR   59 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCC--------------SSCCS-CC--CTTCSEEECCSSCCSCCCT----TSSSS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCC--------------CccCC-CC--CCCCCEEECcCCCCCeeCH----HHhcC
Confidence            4799999999864 23455678877665              11111 11  2578999999999988765    57888


Q ss_pred             CCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCE
Q 043567          156 LKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV  235 (911)
Q Consensus       156 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  235 (911)
                      +++|++|++++|.++...+..|.++++|++|++++|++.+ ++...|.++++|++|++++|+++ .++...|.++++|++
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY  137 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCE
Confidence            9999999999999987777777889999999999999874 45467888999999999999988 455556888999999


Q ss_pred             EeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCC
Q 043567          236 LNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRN  315 (911)
Q Consensus       236 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~  315 (911)
                      |++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++|.
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence            999999988876667888899999999999988777777888899999999999887 4554556666666666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.8e-23  Score=218.44  Aligned_cols=202  Identities=22%  Similarity=0.256  Sum_probs=154.8

Q ss_pred             CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567          570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL  649 (911)
Q Consensus       570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  649 (911)
                      +++|+.|++++|.+... +....+++|++|++++|++++ + ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            34444444444443321 122245566666666666654 2 36777888888888888888777777888888888888


Q ss_pred             cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567          650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL  729 (911)
Q Consensus       650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l  729 (911)
                      ++|++++..|..+..+++|++|++++|++++..|..+..                                         
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------------------------------  155 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-----------------------------------------  155 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------------------------------
Confidence            888888777777888888999999988888655543332                                         


Q ss_pred             CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567          730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL  809 (911)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l  809 (911)
                                                     +++|+.|++++|++++..|..++.+++|++|++++|++++..|..++.+
T Consensus       156 -------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (272)
T 3rfs_A          156 -------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  204 (272)
T ss_dssp             -------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence                                           2467889999999997777778999999999999999999888889999


Q ss_pred             CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCCC
Q 043567          810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPDK  853 (911)
Q Consensus       810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  853 (911)
                      ++|+.|++++|.+++..|       .|++++++.|+++|.||..
T Consensus       205 ~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          205 TSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             cCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            999999999999987654       5888999999999999975

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.9e-23  Score=220.09  Aligned_cols=198  Identities=20%  Similarity=0.208  Sum_probs=86.5

Q ss_pred             CCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEEC
Q 043567          451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRM  530 (911)
Q Consensus       451 ~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  530 (911)
                      ++..+++..+.+.+....   ..+++|+.|++++|.+..  .+.+..+++|++|++++|++++.  ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCccccccccc---ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            344445555555433322   234455555555555432  12344445555555555554431  23444445555555


Q ss_pred             cCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccc
Q 043567          531 SSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPI  610 (911)
Q Consensus       531 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~  610 (911)
                      ++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+++..+.                     
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------  151 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG---------------------  151 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------------
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH---------------------
Confidence            55554444444444444444444444444433333344444444444444444433333                     


Q ss_pred             cccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcC
Q 043567          611 PIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF  678 (911)
Q Consensus       611 p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  678 (911)
                        .+..+++|++|++++|++++..+..++.+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus       152 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          152 --VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             --TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             --HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence              333344444444444444433333334444444444444444433333334444444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4.1e-24  Score=236.76  Aligned_cols=176  Identities=22%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             EEccCccccccccccccCCCCCcEEECcCCcCcccCC----cCccCcC-CCcEEEccCcccccccchhhccC-----CCC
Q 043567          504 LYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIP----HWMGNLS-YLEVLLMSKNFFEGNIPVQLLNH-----RRL  573 (911)
Q Consensus       504 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~-----~~L  573 (911)
                      ++++.|.+++.+|..+...++|++|++++|++++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555544444445555555555554433    3444454 55555555555554444444443     555


Q ss_pred             cEEEccCcccccccCccc-----cc-ccccEEEcccCccccccccccc----C-CCCCCEEeCCCCcccccC----chhh
Q 043567          574 QLFSVSENYLSGFMTTSF-----NI-SSVEHLYLQKNSLSGPIPIALF----R-SSNLLTLDLRDNGFSGVI----PHQI  638 (911)
Q Consensus       574 ~~L~ls~n~l~~~~~~~~-----~~-~~L~~L~Ls~n~l~~~~p~~l~----~-~~~L~~L~Ls~N~l~~~~----p~~l  638 (911)
                      ++|++++|.+++..+..+     .+ ++|++|++++|++++..+..+.    . .++|++|+|++|++++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            555555555554443322     11 4555555555555444333322    1 235555555555555322    2223


Q ss_pred             hcCC-CccEEEccCCcccccCChhhhc----C-CCCCeEEcCCCcCC
Q 043567          639 NECS-NLRFLLLRGNNLEGQIPNQICQ----L-TGLGMMDLSHNKFN  679 (911)
Q Consensus       639 ~~l~-~L~~L~L~~N~l~~~ip~~l~~----l-~~L~~L~Ls~N~l~  679 (911)
                      ..++ +|++|+|++|++++..+..+..    . ++|+.|||++|.++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            3333 5555555555555444433332    2 35555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=4.3e-22  Score=210.90  Aligned_cols=205  Identities=22%  Similarity=0.250  Sum_probs=159.5

Q ss_pred             CcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCC
Q 043567          573 LQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN  652 (911)
Q Consensus       573 L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  652 (911)
                      .+.++++++.++.. |..+ .+++++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~i-p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAI-PSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCcc-CCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            44455555555432 2211 245677777777777655667788888888888888888655556678888888888888


Q ss_pred             cccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCC
Q 043567          653 NLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE  732 (911)
Q Consensus       653 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~  732 (911)
                      ++++..+..+..+++|++|++++|++++..|..+..                                            
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------  131 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------------------------------  131 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence            888766677788888999999888887655544432                                            


Q ss_pred             CCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCC
Q 043567          733 ERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMI  812 (911)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L  812 (911)
                                                  +++|+.|++++|++++..+..++.+++|+.|+|++|++++..|..|.++++|
T Consensus       132 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  183 (270)
T 2o6q_A          132 ----------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL  183 (270)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence                                        3467889999999986666678999999999999999998888889999999


Q ss_pred             CEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567          813 ESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       813 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  851 (911)
                      +.|||++|++++..+..+..++.|++|++++|++....+
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            999999999998777778999999999999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=9.4e-24  Score=233.91  Aligned_cols=257  Identities=17%  Similarity=0.150  Sum_probs=207.6

Q ss_pred             EEECcCCcCcccCCcCccCcCCCcEEEccCcccccccc----hhhccCC-CCcEEEccCcccccccCccc-cc-----cc
Q 043567          527 ELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP----VQLLNHR-RLQLFSVSENYLSGFMTTSF-NI-----SS  595 (911)
Q Consensus       527 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~~~-~L~~L~ls~n~l~~~~~~~~-~~-----~~  595 (911)
                      .++++.|.++|.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+ .+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46889999999999888888889999999999997766    7778888 89999999999998877665 43     89


Q ss_pred             ccEEEcccCcccccccccccC----C-CCCCEEeCCCCcccccCchhhhc-----CCCccEEEccCCcccccC----Chh
Q 043567          596 VEHLYLQKNSLSGPIPIALFR----S-SNLLTLDLRDNGFSGVIPHQINE-----CSNLRFLLLRGNNLEGQI----PNQ  661 (911)
Q Consensus       596 L~~L~Ls~n~l~~~~p~~l~~----~-~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~i----p~~  661 (911)
                      |++|++++|++++..+..+..    + ++|++|++++|++++..+..+..     .++|++|+|++|++++..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999999877765444    4 89999999999999877766543     369999999999998644    444


Q ss_pred             hhcCC-CCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccc
Q 043567          662 ICQLT-GLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD  740 (911)
Q Consensus       662 l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  740 (911)
                      +..++ +|+.|+|++|++++..+..+...-                                                  
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------------------------  191 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------------------------  191 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------------------
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------------------
Confidence            55665 999999999999876665443320                                                  


Q ss_pred             cceeeeeeeccceeeccCCcC-ccccEEEcccCccccc----CCccccC-CCCCCEEECCCCcCCcccc----ccccccC
Q 043567          741 YLVEVEFVTKNRYEVYNGSNL-DYMVGLDLSCNKLTGE----IPSEIGE-LQEIPVLNMSHNFLSESIP----ESFSNLK  810 (911)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~g~----ip~~i~~-l~~L~~L~Ls~N~l~g~ip----~~l~~l~  810 (911)
                                        ... +.|+.|||++|++++.    ++..+.. .++|++|||++|++++..+    ..+..++
T Consensus       192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence                              011 3688999999999863    6666666 4599999999999998655    4456789


Q ss_pred             CCCEEeccCCcCccc-------CCCCCCCCCCCCeEeccCCcCeecCC
Q 043567          811 MIESLDLSHNRLSGQ-------IPPKLTELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       811 ~L~~LdLs~N~l~g~-------ip~~l~~l~~L~~L~ls~N~l~g~iP  851 (911)
                      +|+.|+|++|++.+.       ++..+..++.|++||+++|++.+..|
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            999999999995433       44578889999999999999987643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.3e-22  Score=212.09  Aligned_cols=201  Identities=19%  Similarity=0.168  Sum_probs=130.2

Q ss_pred             CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567          570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL  649 (911)
Q Consensus       570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  649 (911)
                      +++++.++++++.++..++..  .+.++.|++++|.+++..|..+..+++|+.|++++|.+++. |.. +.+++|++|++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEEC
Confidence            344444444444444322221  14555666666666655566666667777777777776643 222 56677777777


Q ss_pred             cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567          650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL  729 (911)
Q Consensus       650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l  729 (911)
                      ++|+++ .+|..+..+++|++|++++|++++..|..|..                                         
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-----------------------------------------  122 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-----------------------------------------  122 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-----------------------------------------
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-----------------------------------------
Confidence            777776 56666677777777777777776544443332                                         


Q ss_pred             CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567          730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL  809 (911)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l  809 (911)
                                                     ++.|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+
T Consensus       123 -------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  171 (290)
T 1p9a_G          123 -------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (290)
T ss_dssp             -------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             -------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence                                           2356667777777776666666777778888888888776555566777


Q ss_pred             CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      ++|+.|+|++|+++ .+|..+..+..|+++++++|++..
T Consensus       172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            78888888888877 677777777778888888887764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.9e-24  Score=240.47  Aligned_cols=248  Identities=19%  Similarity=0.218  Sum_probs=167.3

Q ss_pred             ccccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCc---ccccccchhhccCCCCcEEEccCccccccc
Q 043567          515 IEEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKN---FFEGNIPVQLLNHRRLQLFSVSENYLSGFM  587 (911)
Q Consensus       515 ~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~  587 (911)
                      ++..+..+++|++|++++|++++.    ++..+..+++|++|++++|   ++++.+|..+..+.                
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~----------------   87 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL----------------   87 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH----------------
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH----------------
Confidence            444555666677777777766644    2233556666666666664   33444444431000                


Q ss_pred             Cccc-ccccccEEEcccCcccc----cccccccCCCCCCEEeCCCCcccccCchhh----hcC---------CCccEEEc
Q 043567          588 TTSF-NISSVEHLYLQKNSLSG----PIPIALFRSSNLLTLDLRDNGFSGVIPHQI----NEC---------SNLRFLLL  649 (911)
Q Consensus       588 ~~~~-~~~~L~~L~Ls~n~l~~----~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~L  649 (911)
                       ..+ .+++|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++
T Consensus        88 -~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           88 -QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             -HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             -HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence             001 34556666666666655    356677777788888888887764433333    333         78888888


Q ss_pred             cCCccc-ccCC---hhhhcCCCCCeEEcCCCcCCC-----CCCcccccccccccCCccccccccchhhhhcccccccccc
Q 043567          650 RGNNLE-GQIP---NQICQLTGLGMMDLSHNKFNG-----SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYY  720 (911)
Q Consensus       650 ~~N~l~-~~ip---~~l~~l~~L~~L~Ls~N~l~g-----~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~  720 (911)
                      ++|+++ +.+|   ..+..+++|+.|+|++|+++.     .+|..+                                  
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l----------------------------------  212 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL----------------------------------  212 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------
Confidence            888886 4455   466778888888888887751     011011                                  


Q ss_pred             ccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc----ccCCccccCCCCCCEEECCCC
Q 043567          721 SSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT----GEIPSEIGELQEIPVLNMSHN  796 (911)
Q Consensus       721 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~i~~l~~L~~L~Ls~N  796 (911)
                                                            ..++.|+.|+|++|+++    +.+|..+..+++|++|+|++|
T Consensus       213 --------------------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          213 --------------------------------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             --------------------------------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             --------------------------------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence                                                  12346788888888886    678888888999999999999


Q ss_pred             cCCcc----cccccc--ccCCCCEEeccCCcCcc----cCCCCC-CCCCCCCeEeccCCcCeecCC
Q 043567          797 FLSES----IPESFS--NLKMIESLDLSHNRLSG----QIPPKL-TELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       797 ~l~g~----ip~~l~--~l~~L~~LdLs~N~l~g----~ip~~l-~~l~~L~~L~ls~N~l~g~iP  851 (911)
                      ++++.    +|..+.  .+++|+.|+|++|++++    .+|..+ .+++.|++|++++|++++..|
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99876    677773  48899999999999998    588777 668899999999999987764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5.6e-24  Score=238.14  Aligned_cols=187  Identities=18%  Similarity=0.253  Sum_probs=113.1

Q ss_pred             cCCCCCCCCCCCEEEccCcccccccc----ccccCCCCCcEEECcCC---cCcccCCcCc-------cCcCCCcEEEccC
Q 043567          491 IFPGYMNLTQLQYLYLENNKFSGKIE----EGLLKSKKLVELRMSSN---MLSGHIPHWM-------GNLSYLEVLLMSK  556 (911)
Q Consensus       491 ~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~L~~  556 (911)
                      ++..+..+++|++|+|++|++++..+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            44556678999999999999987644    44778999999999996   4555666555       6788999999999


Q ss_pred             ccccc----ccchhhccCCCCcEEEccCcccccccCccc-----cc---------ccccEEEcccCccc-cccc---ccc
Q 043567          557 NFFEG----NIPVQLLNHRRLQLFSVSENYLSGFMTTSF-----NI---------SSVEHLYLQKNSLS-GPIP---IAL  614 (911)
Q Consensus       557 n~l~~----~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-----~~---------~~L~~L~Ls~n~l~-~~~p---~~l  614 (911)
                      |.+++    .+|..+..+++|+.|++++|.++...+..+     .+         ++|++|++++|+++ +.+|   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            98887    477778888888888888888765433322     11         44555555555544 2222   233


Q ss_pred             cCCCCCCEEeCCCCccc--c---cCchhhhcCCCccEEEccCCccc----ccCChhhhcCCCCCeEEcCCCc
Q 043567          615 FRSSNLLTLDLRDNGFS--G---VIPHQINECSNLRFLLLRGNNLE----GQIPNQICQLTGLGMMDLSHNK  677 (911)
Q Consensus       615 ~~~~~L~~L~Ls~N~l~--~---~~p~~l~~l~~L~~L~L~~N~l~----~~ip~~l~~l~~L~~L~Ls~N~  677 (911)
                      ..+++|++|++++|+++  |   ..|..+..+++|++|+|++|.++    +.+|..+..+++|+.|+|++|+
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            34444444444444444  1   12223444444444444444443    2333334444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=5.4e-22  Score=207.66  Aligned_cols=213  Identities=20%  Similarity=0.235  Sum_probs=166.9

Q ss_pred             ccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEc
Q 043567          594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDL  673 (911)
Q Consensus       594 ~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~L  673 (911)
                      ...++++++++.++ .+|..+.  ++++.|++++|++++..|..+.++++|++|+|++|++++..|..+..+++|++|+|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34567777777776 5666554  58899999999999888888999999999999999999888888899999999999


Q ss_pred             CCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccce
Q 043567          674 SHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRY  753 (911)
Q Consensus       674 s~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  753 (911)
                      ++|++++..|..+..                                                                 
T Consensus        91 ~~n~l~~~~~~~~~~-----------------------------------------------------------------  105 (251)
T 3m19_A           91 ANNQLASLPLGVFDH-----------------------------------------------------------------  105 (251)
T ss_dssp             TTSCCCCCCTTTTTT-----------------------------------------------------------------
T ss_pred             CCCcccccChhHhcc-----------------------------------------------------------------
Confidence            999988655544432                                                                 


Q ss_pred             eeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCC
Q 043567          754 EVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTEL  833 (911)
Q Consensus       754 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l  833 (911)
                             +++|+.|+|++|++++..+..++.+++|++|+|++|++++..|..++.+++|+.|||++|++++..|..+..+
T Consensus       106 -------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A          106 -------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence                   3467889999999997777778999999999999999998888789999999999999999998888899999


Q ss_pred             CCCCeEeccCCcCeecCCCCCCCCcc------CccccCCCCCCCCCccCCCCCCC
Q 043567          834 NFLSNFNVSYNNLSGLIPDKGQFATF------DESSYRGNLHLCGPTINKSCNGV  882 (911)
Q Consensus       834 ~~L~~L~ls~N~l~g~iP~~~~~~~~------~~~~~~gn~~lcg~~l~~~c~~~  882 (911)
                      +.|++|++++|++++..+....+..+      ......|+. +|+.+-...|...
T Consensus       179 ~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          179 GKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             TTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             CCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence            99999999999999875443222211      111123443 7777777778754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.8e-21  Score=208.01  Aligned_cols=202  Identities=25%  Similarity=0.260  Sum_probs=173.1

Q ss_pred             ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567          592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM  671 (911)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L  671 (911)
                      ++++++++++++|.++ .+|..+.  ++++.|++++|++++..|..+..+++|++|++++|.+++..+ . ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEE
Confidence            6788999999999998 6777664  689999999999998888999999999999999999996444 3 789999999


Q ss_pred             EcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeecc
Q 043567          672 DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN  751 (911)
Q Consensus       672 ~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  751 (911)
                      ++++|+++ .+|..+..                                                               
T Consensus        83 ~Ls~N~l~-~l~~~~~~---------------------------------------------------------------   98 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQT---------------------------------------------------------------   98 (290)
T ss_dssp             ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred             ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence            99999997 45543322                                                               


Q ss_pred             ceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCC
Q 043567          752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT  831 (911)
Q Consensus       752 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~  831 (911)
                               ++.|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..+.
T Consensus        99 ---------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G           99 ---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             ---------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             ---------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence                     34788899999999987788999999999999999999988888899999999999999999976666789


Q ss_pred             CCCCCCeEeccCCcCeecCCCC-CCCCccCccccCCCCCCCC
Q 043567          832 ELNFLSNFNVSYNNLSGLIPDK-GQFATFDESSYRGNLHLCG  872 (911)
Q Consensus       832 ~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg  872 (911)
                      .++.|++|++++|+++ .||.+ .....+....+.|||.-|.
T Consensus       170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            9999999999999999 56654 3344455566789999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.1e-22  Score=223.05  Aligned_cols=250  Identities=18%  Similarity=0.247  Sum_probs=156.2

Q ss_pred             CCEEEccCccccccccccccCC--CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccc-cchhhccCCCCcEEE
Q 043567          501 LQYLYLENNKFSGKIEEGLLKS--KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGN-IPVQLLNHRRLQLFS  577 (911)
Q Consensus       501 L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~  577 (911)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            566777776665   3334444  6777777777777765554 44567777777777776654 555555555555555


Q ss_pred             ccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCC-cccc-cCchhhhcCCCccEEEccCC-cc
Q 043567          578 VSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN-GFSG-VIPHQINECSNLRFLLLRGN-NL  654 (911)
Q Consensus       578 ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~N-~l  654 (911)
                      +++|.                       +++..|..+..+++|++|++++| .+++ .+|..+..+++|++|++++| .+
T Consensus       125 L~~~~-----------------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          125 LEGLR-----------------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             CTTCB-----------------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             CcCcc-----------------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence            55544                       44445555566666666666666 4554 24555666677777777777 66


Q ss_pred             ccc-CChhhhcCC-CCCeEEcCCCc--CC-CCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567          655 EGQ-IPNQICQLT-GLGMMDLSHNK--FN-GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL  729 (911)
Q Consensus       655 ~~~-ip~~l~~l~-~L~~L~Ls~N~--l~-g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l  729 (911)
                      ++. ++..+..++ +|+.|++++|.  ++ +.+|..+.                                          
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~------------------------------------------  219 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR------------------------------------------  219 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH------------------------------------------
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh------------------------------------------
Confidence            643 556666677 77777777773  33 11221111                                          


Q ss_pred             CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCc-ccccCCccccCCCCCCEEECCCCc-CCcccccccc
Q 043567          730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNK-LTGEIPSEIGELQEIPVLNMSHNF-LSESIPESFS  807 (911)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~i~~l~~L~~L~Ls~N~-l~g~ip~~l~  807 (911)
                                                    .+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......++
T Consensus       220 ------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          220 ------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             ------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             ------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence                                          13456777777777 666777778888888888888884 3322223577


Q ss_pred             ccCCCCEEeccCCcCcccCCCCCCCCC-CCCeEeccCCcCeecCCCC
Q 043567          808 NLKMIESLDLSHNRLSGQIPPKLTELN-FLSNFNVSYNNLSGLIPDK  853 (911)
Q Consensus       808 ~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~~  853 (911)
                      ++++|+.|++++| ++.   ..+..+. .+..|++++|+++|..|..
T Consensus       270 ~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          270 EIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             cCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            7888888888888 321   1333332 3667778888888887753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=217.73  Aligned_cols=203  Identities=19%  Similarity=0.205  Sum_probs=131.0

Q ss_pred             CCcEEEccCcccccccCcc---cccccccEEEcccCccccccc----ccccCCCCCCEEeCCCCcccccCchhhhcCCCc
Q 043567          572 RLQLFSVSENYLSGFMTTS---FNISSVEHLYLQKNSLSGPIP----IALFRSSNLLTLDLRDNGFSGVIPHQINECSNL  644 (911)
Q Consensus       572 ~L~~L~ls~n~l~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p----~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L  644 (911)
                      +|++|++++|.+.+..|..   ..+++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..++.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            3444444444444444433   234555555555555554433    234456777777777777776666777777777


Q ss_pred             cEEEccCCccccc--C--ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcccccccccc
Q 043567          645 RFLLLRGNNLEGQ--I--PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYY  720 (911)
Q Consensus       645 ~~L~L~~N~l~~~--i--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~  720 (911)
                      ++|+|++|++.+.  +  +..+..+++|++|+|++|+++. +|.....+                               
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l-------------------------------  219 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL-------------------------------  219 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH-------------------------------
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH-------------------------------
Confidence            7777777776542  2  2223567777888888777752 12110000                               


Q ss_pred             ccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCC---CCCCEEECCCCc
Q 043567          721 SSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGEL---QEIPVLNMSHNF  797 (911)
Q Consensus       721 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l---~~L~~L~Ls~N~  797 (911)
                                                           ...++.|+.|||++|++++.+|+.++.+   ++|++|+|++|+
T Consensus       220 -------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          220 -------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             -------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             -------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence                                                 0112466778888888887777777776   588888888888


Q ss_pred             CCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          798 LSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       798 l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      ++ .+|..+.  ++|+.|||++|++++. |. +..++.|++|++++|+++.
T Consensus       263 l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          263 LE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88 6777775  6888888888888863 33 5677888888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.3e-21  Score=202.82  Aligned_cols=192  Identities=26%  Similarity=0.331  Sum_probs=163.8

Q ss_pred             CCccccceeecCCCCcEEEEecCCCCcccccccccccCCcccccccccccCCCCCCEEeCCCCCCCcccCcccccccCCC
Q 043567           77 DCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSL  156 (911)
Q Consensus        77 ~~C~w~gv~C~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l  156 (911)
                      +||.|.|.+|...   ...+++++..+              ..+.. .+  .+++++|+|++|.+++..+    ..+.++
T Consensus         3 ~Cp~~~gC~C~~~---~~~l~~~~~~l--------------~~~p~-~~--~~~l~~L~L~~n~l~~~~~----~~~~~l   58 (251)
T 3m19_A            3 TCETVTGCTCNEG---KKEVDCQGKSL--------------DSVPS-GI--PADTEKLDLQSTGLATLSD----ATFRGL   58 (251)
T ss_dssp             -CHHHHSSEEEGG---GTEEECTTCCC--------------SSCCS-CC--CTTCCEEECTTSCCCCCCT----TTTTTC
T ss_pred             cCCCCCceEcCCC---CeEEecCCCCc--------------cccCC-CC--CCCCCEEEccCCCcCccCH----hHhcCc
Confidence            6999999999532   23467777654              11111 12  2589999999999999877    678999


Q ss_pred             CCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEE
Q 043567          157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVL  236 (911)
Q Consensus       157 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  236 (911)
                      ++|++|++++|.+.+..+..+.++++|++|+|++|++++ ++...|..+++|++|+|++|+++ .++...|.++++|++|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEE
Confidence            999999999999999888899999999999999999984 55577899999999999999998 6666678999999999


Q ss_pred             eccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCc
Q 043567          237 NLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGT  294 (911)
Q Consensus       237 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  294 (911)
                      +|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+.+.
T Consensus       137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999997777899999999999999999988888899999999999999999865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.1e-22  Score=220.94  Aligned_cols=253  Identities=21%  Similarity=0.267  Sum_probs=158.4

Q ss_pred             CccEEEccCCcCCcCCChhHHHhc--cCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCc-ccHHHHhcccccc
Q 043567          402 FLHHLDISSNNFTGKLPQDMGIIL--QKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGE-LSAALLTSCFSLL  478 (911)
Q Consensus       402 ~L~~L~ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~-i~~~~~~~~~~L~  478 (911)
                      .++.++++++.+.   |..+. .+  ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+    
T Consensus        48 ~~~~l~l~~~~~~---~~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~----  117 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQC----  117 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTB----
T ss_pred             hheeeccccccCC---HHHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhC----
Confidence            3677777777665   33333 24  6777777777777765554 44567777777777766543 332 23344    


Q ss_pred             eeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCC-cCccc-CCcCccCcCCCcEEEccC
Q 043567          479 WLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSN-MLSGH-IPHWMGNLSYLEVLLMSK  556 (911)
Q Consensus       479 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~  556 (911)
                                          ++|++|++++|++++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++
T Consensus       118 --------------------~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~  177 (336)
T 2ast_B          118 --------------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  177 (336)
T ss_dssp             --------------------CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             --------------------CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence                                45555555555555455555555555555555555 34432 344455556666666666


Q ss_pred             c-ccccc-cchhhccCC-CCcEEEccCc--ccc-cccCccc-ccccccEEEcccCc-ccccccccccCCCCCCEEeCCCC
Q 043567          557 N-FFEGN-IPVQLLNHR-RLQLFSVSEN--YLS-GFMTTSF-NISSVEHLYLQKNS-LSGPIPIALFRSSNLLTLDLRDN  628 (911)
Q Consensus       557 n-~l~~~-~p~~l~~~~-~L~~L~ls~n--~l~-~~~~~~~-~~~~L~~L~Ls~n~-l~~~~p~~l~~~~~L~~L~Ls~N  628 (911)
                      | .+++. ++..+..++ +|++|++++|  .++ +.++..+ .+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus       178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            6 55543 455566666 6666666666  333 3334333 66777778888877 66677778888899999999998


Q ss_pred             c-ccccCchhhhcCCCccEEEccCCcccccCChhhhcC-CCCCeEEcCCCcCCCCCCccccc
Q 043567          629 G-FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQL-TGLGMMDLSHNKFNGSIPSCFTN  688 (911)
Q Consensus       629 ~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~  688 (911)
                      . +.......+.++++|++|++++| ++..   .+..+ ..+..|++++|++++..|..+++
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence            5 32222235788999999999998 4422   23333 23666778999999999987764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=211.38  Aligned_cols=201  Identities=20%  Similarity=0.134  Sum_probs=141.7

Q ss_pred             cccceeeccCcccccccCCCC--CCCCCCCEEEccCcccccccc----ccccCCCCCcEEECcCCcCcccCCcCccCcCC
Q 043567          475 FSLLWLGLSDNNFYGRIFPGY--MNLTQLQYLYLENNKFSGKIE----EGLLKSKKLVELRMSSNMLSGHIPHWMGNLSY  548 (911)
Q Consensus       475 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  548 (911)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445556666666555555555  666777777777777765433    23345677777777777777666677777777


Q ss_pred             CcEEEccCcccccc--cc--hhhccCCCCcEEEccCcccccccCc---cc-ccccccEEEcccCcccccccccccCC---
Q 043567          549 LEVLLMSKNFFEGN--IP--VQLLNHRRLQLFSVSENYLSGFMTT---SF-NISSVEHLYLQKNSLSGPIPIALFRS---  617 (911)
Q Consensus       549 L~~L~L~~n~l~~~--~p--~~l~~~~~L~~L~ls~n~l~~~~~~---~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~---  617 (911)
                      |++|++++|++.+.  ++  ..+..+++|++|++++|.++...+.   .+ .+++|++|++++|++++.+|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            77777777776543  22  2235677777777777777643221   22 56788888888888887777777776   


Q ss_pred             CCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCC
Q 043567          618 SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       618 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g  680 (911)
                      ++|++|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            58999999999998 6777764  7899999999999853 43 5778899999999998863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.5e-20  Score=202.95  Aligned_cols=126  Identities=21%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             CCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEE
Q 043567          521 KSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLY  600 (911)
Q Consensus       521 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  600 (911)
                      .+++|++|++++|.++. +| .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++.              
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--------------  100 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--------------  100 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--------------
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--------------
Confidence            44556666666666552 33 355555555555555555432 22 44444444444444433321              


Q ss_pred             cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                                + .+..+++|++|++++|++++ +| .+..+++|++|++++|++++..+  +..+++|+.|++++|+++
T Consensus       101 ----------~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          101 ----------S-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ----------G-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ----------h-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence                      1 34445555555555555553 22 25555555555555555553222  445555555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.6e-21  Score=197.86  Aligned_cols=38  Identities=16%  Similarity=0.256  Sum_probs=16.4

Q ss_pred             CCCCEEECCCCc-CCcccccccccc-CCCCEEeccCCcCc
Q 043567          786 QEIPVLNMSHNF-LSESIPESFSNL-KMIESLDLSHNRLS  823 (911)
Q Consensus       786 ~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~LdLs~N~l~  823 (911)
                      ++|+.|+|++|+ +++..|..++.+ ++|+.||+++|+++
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            344444444442 443333344444 44444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.1e-20  Score=200.37  Aligned_cols=193  Identities=16%  Similarity=0.269  Sum_probs=152.5

Q ss_pred             CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567          570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL  649 (911)
Q Consensus       570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  649 (911)
                      +++|+.|++++|.+... +....+++|++|++++|.+++..+  +..+++|++|++++|++++ +| .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence            34444444444444432 222255666777777777764433  8889999999999999986 34 7899999999999


Q ss_pred             cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567          650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL  729 (911)
Q Consensus       650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l  729 (911)
                      ++|++++ +|. +..+++|+.|++++|++++..|  +.                                          
T Consensus       115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------------  148 (308)
T 1h6u_A          115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LA------------------------------------------  148 (308)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GG------------------------------------------
T ss_pred             CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--cc------------------------------------------
Confidence            9999986 443 8999999999999999875322  22                                          


Q ss_pred             CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567          730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL  809 (911)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l  809 (911)
                                                    .++.|+.|++++|++++. |. +..+++|+.|++++|++++..|  +..+
T Consensus       149 ------------------------------~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l  194 (308)
T 1h6u_A          149 ------------------------------GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASL  194 (308)
T ss_dssp             ------------------------------GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             ------------------------------CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCC
Confidence                                          235788999999999964 44 8999999999999999997654  8999


Q ss_pred             CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeec
Q 043567          810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  849 (911)
                      ++|+.|++++|++++..|  +..++.|++|++++|++++.
T Consensus       195 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             CCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            999999999999997664  89999999999999999873

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=2.8e-20  Score=193.13  Aligned_cols=195  Identities=15%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             ccceeeccCcccccccCCCCCCCCCCCEEEccCcc-ccccccccccCCCCCcEEECcC-CcCcccCCcCccCcCCCcEEE
Q 043567          476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNK-FSGKIEEGLLKSKKLVELRMSS-NMLSGHIPHWMGNLSYLEVLL  553 (911)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~  553 (911)
                      +|+.|++++|++++..+..|..+++|++|++++|+ ++...+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444444444444445555666666666664 5544444555666666666665 666554445556666666666


Q ss_pred             ccCcccccccchhhccCCCCc---EEEccCc-ccccccCccc-cccccc-EEEcccCcccccccccccCCCCCCEEeCCC
Q 043567          554 MSKNFFEGNIPVQLLNHRRLQ---LFSVSEN-YLSGFMTTSF-NISSVE-HLYLQKNSLSGPIPIALFRSSNLLTLDLRD  627 (911)
Q Consensus       554 L~~n~l~~~~p~~l~~~~~L~---~L~ls~n-~l~~~~~~~~-~~~~L~-~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~  627 (911)
                      +++|.+++ +|. +..+++|+   +|++++| .+++..+..+ .+++|+ +|++++|+++ .+|......++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            66666654 444 55555555   6666666 5655555544 566666 6666666666 4444433346677777777


Q ss_pred             Cc-ccccCchhhhcC-CCccEEEccCCcccccCChhhhcCCCCCeEEcCCC
Q 043567          628 NG-FSGVIPHQINEC-SNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN  676 (911)
Q Consensus       628 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N  676 (911)
                      |+ +++..+..+..+ ++|++|++++|+++ .+|..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            74 665555666666 77777777777776 34433  4566777777655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=7.9e-20  Score=211.50  Aligned_cols=114  Identities=22%  Similarity=0.319  Sum_probs=54.9

Q ss_pred             CCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCC
Q 043567          548 YLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRD  627 (911)
Q Consensus       548 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~  627 (911)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++. +|  ..+++|++|++++|++++ +|. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            56666666666654 554442  455555555555552 22  123445555555555543 443 332  455555555


Q ss_pred             CcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          628 NGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       628 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      |++++ +|.   .+++|++|++++|++++ +|.   .+++|+.|+|++|+++
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            55443 333   34444445555444443 333   2344444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.1e-19  Score=200.20  Aligned_cols=219  Identities=17%  Similarity=0.143  Sum_probs=125.2

Q ss_pred             EEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCE-Eecc
Q 043567          161 ILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFV-LNLE  239 (911)
Q Consensus       161 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-L~Ls  239 (911)
                      .++.++++++ .+|..+  .+++++|+|++|+|+ .++...|.++++|++|+|++|++.+.++..+|.++++|++ +.++
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            4445555444 233333  245566666666665 4444556666666666666666654555555666665554 3444


Q ss_pred             CCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCcccc
Q 043567          240 KNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ  319 (911)
Q Consensus       240 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~  319 (911)
                      .|+++...|..|..+++|++|++++|++++..+..+....++..|++.+                         ++.+..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~-------------------------~~~i~~  143 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-------------------------NINIHT  143 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES-------------------------CTTCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc-------------------------cccccc
Confidence            5566655555566666666666666666544444444444444555443                         333333


Q ss_pred             ccccCcCCCC-CceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCC
Q 043567          320 VQTENFLPTF-QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDD  398 (911)
Q Consensus       320 ~~~~~~~~~~-~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  398 (911)
                      ++...+.... .++.|++++|.+..+|..++...+|++|++++++..+.+|..++.++++|++|++++|+++..   |..
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l---p~~  220 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL---PSY  220 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC---CSS
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc---Chh
Confidence            3333343332 567788888888888888777778888888764444477777776777777777777766632   233


Q ss_pred             CCCCccEEEccCC
Q 043567          399 KHDFLHHLDISSN  411 (911)
Q Consensus       399 ~~~~L~~L~ls~n  411 (911)
                      .+.+|+.|.+.++
T Consensus       221 ~~~~L~~L~~l~~  233 (350)
T 4ay9_X          221 GLENLKKLRARST  233 (350)
T ss_dssp             SCTTCCEEECTTC
T ss_pred             hhccchHhhhccC
Confidence            3444444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=7e-20  Score=211.95  Aligned_cols=188  Identities=22%  Similarity=0.253  Sum_probs=98.5

Q ss_pred             ccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEcc
Q 043567          476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS  555 (911)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  555 (911)
                      +++.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            44444444444443 33322  144555555555555 334   234555555555555554 444 333  55555555


Q ss_pred             CcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc
Q 043567          556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP  635 (911)
Q Consensus       556 ~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p  635 (911)
                      +|.+++ +|.   .+++|+.|++++|.+++. |.  .+++|++|++++|++++ +|. +.  ++|+.|+|++|+++ .+|
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcC-CC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            555554 443   345555555555555552 22  34556666666666554 444 33  56666666666665 445


Q ss_pred             hhhhcCCCc-------cEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccc
Q 043567          636 HQINECSNL-------RFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNIT  690 (911)
Q Consensus       636 ~~l~~l~~L-------~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  690 (911)
                      . +..  +|       ++|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            4 333  45       66666666666 4566666666666666666666666666555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.1e-19  Score=180.96  Aligned_cols=87  Identities=22%  Similarity=0.218  Sum_probs=41.5

Q ss_pred             cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567          593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD  672 (911)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~  672 (911)
                      +++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            33444444444444433333344455555555555555544444445555555555555555544343444555555555


Q ss_pred             cCCCcCC
Q 043567          673 LSHNKFN  679 (911)
Q Consensus       673 Ls~N~l~  679 (911)
                      +++|++.
T Consensus       155 l~~N~~~  161 (208)
T 2o6s_A          155 LHDNPWD  161 (208)
T ss_dssp             CCSCCBC
T ss_pred             ecCCCee
Confidence            5555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.9e-19  Score=182.50  Aligned_cols=174  Identities=20%  Similarity=0.255  Sum_probs=125.8

Q ss_pred             EEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567          598 HLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK  677 (911)
Q Consensus       598 ~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~  677 (911)
                      .++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            4555555554 344433  2467778888887776656667777888888888888876555566778888888888887


Q ss_pred             CCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeecc
Q 043567          678 FNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYN  757 (911)
Q Consensus       678 l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (911)
                      +++..+..+..                                                                     
T Consensus        88 l~~~~~~~~~~---------------------------------------------------------------------   98 (208)
T 2o6s_A           88 LQSLPNGVFDK---------------------------------------------------------------------   98 (208)
T ss_dssp             CCCCCTTTTTT---------------------------------------------------------------------
T ss_pred             CCccCHhHhcC---------------------------------------------------------------------
Confidence            77443333322                                                                     


Q ss_pred             CCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCC
Q 043567          758 GSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLS  837 (911)
Q Consensus       758 ~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  837 (911)
                         +++|+.|++++|++++..+..+..+++|++|+|++|++++..+..++.+++|+.|++++|.+.+..       +.|+
T Consensus        99 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~  168 (208)
T 2o6s_A           99 ---LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIR  168 (208)
T ss_dssp             ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTH
T ss_pred             ---ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHH
Confidence               246677888888888666666788888888888888888777777888888888888888777543       4678


Q ss_pred             eEeccCCcCeecCCCC
Q 043567          838 NFNVSYNNLSGLIPDK  853 (911)
Q Consensus       838 ~L~ls~N~l~g~iP~~  853 (911)
                      +|+++.|+++|.||..
T Consensus       169 ~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          169 YLSEWINKHSGVVRNS  184 (208)
T ss_dssp             HHHHHHHHCTTTBBCT
T ss_pred             HHHHHHHhCCceeecc
Confidence            8888888888888864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4.1e-19  Score=195.49  Aligned_cols=243  Identities=14%  Similarity=0.124  Sum_probs=155.1

Q ss_pred             cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567          404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS  483 (911)
Q Consensus       404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~  483 (911)
                      ++++.++++++ .+|..+   .+++++|++++|+++...+.+|.++++|++|+|++|++.+.+|...|.++++++.    
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~----   83 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE----   83 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE----
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh----
Confidence            45666777776 677765   4577888888888875555567778888888888887765666544444443332    


Q ss_pred             CcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCc-ccccc
Q 043567          484 DNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN-FFEGN  562 (911)
Q Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~  562 (911)
                                         .+.+..|+++...|..|..+++|++|++++|++.+..+..+....++..+++.++ ++...
T Consensus        84 -------------------~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           84 -------------------IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             -------------------EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             -------------------hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence                               2334445555444555555555556666555555444444445555566666443 34322


Q ss_pred             cchhhccC-CCCcEEEccCcccccccCcccccccccEEEcccCcccccccc-cccCCCCCCEEeCCCCcccccCchhhhc
Q 043567          563 IPVQLLNH-RRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPI-ALFRSSNLLTLDLRDNGFSGVIPHQINE  640 (911)
Q Consensus       563 ~p~~l~~~-~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~l~~~~~L~~L~Ls~N~l~~~~p~~l~~  640 (911)
                      .+..+..+ ..++.|++++|+++...+..+...+|+++++++|+..+.+|. .|..+++|++||+++|+++. +|..  .
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--G  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--S
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--h
Confidence            22333443 356777777777776666666667788888876444445654 57888999999999999984 4542  2


Q ss_pred             CCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCc
Q 043567          641 CSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNK  677 (911)
Q Consensus       641 l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~  677 (911)
                      +.+|+.|.+.++.-...+| .+.++++|+.++++++.
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            4566777766655555777 47889999999997654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.9e-19  Score=183.88  Aligned_cols=157  Identities=20%  Similarity=0.211  Sum_probs=120.5

Q ss_pred             CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCC-hhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567          621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIP-NQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR  699 (911)
Q Consensus       621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~  699 (911)
                      +.+++++|.++ .+|..+.  ..+++|+|++|++++..| ..+..+++|+.|+|++|++++..|..|..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46666666666 3555443  345677777777776544 34667777777777777776544444432           


Q ss_pred             cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567          700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP  779 (911)
Q Consensus       700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  779 (911)
                                                                                   +++|+.|+|++|++++..|
T Consensus        80 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           80 -------------------------------------------------------------ASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCSSCCCCCCG
T ss_pred             -------------------------------------------------------------CCCCCEEECCCCccCccCH
Confidence                                                                         2356778888888887777


Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567          780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  852 (911)
                      ..++.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..++.|++|++++|++++..+.
T Consensus        99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            7788899999999999999988899999999999999999999998899999999999999999999987663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=4.8e-18  Score=173.44  Aligned_cols=87  Identities=20%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      +|+.|+|++|+|++..+..+..+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..++.|++|+++
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            45566667776664444456777788888888888887777778888888888888888887777777778888888888


Q ss_pred             CCcCeec
Q 043567          843 YNNLSGL  849 (911)
Q Consensus       843 ~N~l~g~  849 (911)
                      +|++...
T Consensus       161 ~N~~~c~  167 (220)
T 2v9t_B          161 QNPFICD  167 (220)
T ss_dssp             SSCEECS
T ss_pred             CCCcCCC
Confidence            8887653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=4.8e-18  Score=173.43  Aligned_cols=156  Identities=18%  Similarity=0.241  Sum_probs=131.6

Q ss_pred             cEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCC
Q 043567          597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH  675 (911)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~  675 (911)
                      +.+++++|.++ .+|..+.  ..+++|++++|++++..| ..+..+++|++|+|++|++++..|..+..+++|++|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46777777776 4666553  456899999999987755 4578899999999999999988888899999999999999


Q ss_pred             CcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceee
Q 043567          676 NKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEV  755 (911)
Q Consensus       676 N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (911)
                      |++++..|..|..                                                                   
T Consensus        91 N~l~~~~~~~~~~-------------------------------------------------------------------  103 (220)
T 2v70_A           91 NRLENVQHKMFKG-------------------------------------------------------------------  103 (220)
T ss_dssp             SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred             CccCccCHhHhcC-------------------------------------------------------------------
Confidence            9998766655543                                                                   


Q ss_pred             ccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCC
Q 043567          756 YNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP  827 (911)
Q Consensus       756 ~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip  827 (911)
                           +++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus       104 -----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          104 -----LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             -----CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             -----CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                 3467889999999998889999999999999999999999999999999999999999999997654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=9.1e-18  Score=179.35  Aligned_cols=170  Identities=21%  Similarity=0.369  Sum_probs=111.5

Q ss_pred             cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567          593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD  672 (911)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~  672 (911)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|++++..|  +..+++|++|++++|++++ +| .+..+++|+.|+
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            4555566666665553 22 35666677777777777765433  6677777777777777764 33 366777777777


Q ss_pred             cCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccc
Q 043567          673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR  752 (911)
Q Consensus       673 Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  752 (911)
                      +++|++++. | .+.                                                                 
T Consensus       119 L~~n~i~~~-~-~l~-----------------------------------------------------------------  131 (291)
T 1h6t_A          119 LEHNGISDI-N-GLV-----------------------------------------------------------------  131 (291)
T ss_dssp             CTTSCCCCC-G-GGG-----------------------------------------------------------------
T ss_pred             CCCCcCCCC-h-hhc-----------------------------------------------------------------
Confidence            777776541 1 111                                                                 


Q ss_pred             eeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCC
Q 043567          753 YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE  832 (911)
Q Consensus       753 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~  832 (911)
                             .++.|+.|++++|++++.  ..++.+++|+.|++++|++++..|  ++.+++|+.|++++|++++ +| .+..
T Consensus       132 -------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~  198 (291)
T 1h6t_A          132 -------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAG  198 (291)
T ss_dssp             -------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTT
T ss_pred             -------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhcc
Confidence                   123566677777777743  457777777778888777776554  7777778888888887775 34 3777


Q ss_pred             CCCCCeEeccCCcCee
Q 043567          833 LNFLSNFNVSYNNLSG  848 (911)
Q Consensus       833 l~~L~~L~ls~N~l~g  848 (911)
                      ++.|++|++++|+++.
T Consensus       199 l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          199 LKNLDVLELFSQECLN  214 (291)
T ss_dssp             CTTCSEEEEEEEEEEC
T ss_pred             CCCCCEEECcCCcccC
Confidence            7778888888877765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.2e-17  Score=171.73  Aligned_cols=156  Identities=23%  Similarity=0.257  Sum_probs=116.9

Q ss_pred             CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567          620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR  699 (911)
Q Consensus       620 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~  699 (911)
                      .+.++.++++++ .+|..+.  ++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..|..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            345666666665 4555443  56777777777777666777777777777777777775333222222           


Q ss_pred             cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567          700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP  779 (911)
Q Consensus       700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  779 (911)
                                                                                   ++.|+.|||++|++++..+
T Consensus        87 -------------------------------------------------------------l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           87 -------------------------------------------------------------LTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCSSCCCCCCT
T ss_pred             -------------------------------------------------------------CCCcCEEECCCCcCCccCh
Confidence                                                                         2456778888888886666


Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567          780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  851 (911)
                      ..+..+++|++|+|++|+++ .+|..+..+++|+.|||++|+|++..+..+..++.|++|++++|++.+..+
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            67788899999999999998 788889999999999999999997777778889999999999999988765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.6e-17  Score=169.15  Aligned_cols=136  Identities=26%  Similarity=0.272  Sum_probs=81.6

Q ss_pred             CCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEe
Q 043567          158 RLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN  237 (911)
Q Consensus       158 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  237 (911)
                      +|++|++++|.+++..+..|.++++|++|+|++|++. .++...|.++++|++|+|++|+++ .++...|..+++|++|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEe
Confidence            3444444444444444444555555555555555553 333344556666666666666665 44444466666777777


Q ss_pred             ccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccC
Q 043567          238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFP  296 (911)
Q Consensus       238 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  296 (911)
                      |++|.++. +|..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+..+
T Consensus       119 Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          119 MCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77776663 56666677777777777777775555566777777777777777765443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=2.4e-20  Score=217.18  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             ccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccc-cccccccCCCCEEeccCCcCccc
Q 043567          764 MVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESI-PESFSNLKMIESLDLSHNRLSGQ  825 (911)
Q Consensus       764 L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~l~g~  825 (911)
                      |+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..++.+++|+.|||++|++++.
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            3334444444443 34 4445555555555555555444 55555555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=4.4e-18  Score=188.02  Aligned_cols=104  Identities=25%  Similarity=0.209  Sum_probs=48.4

Q ss_pred             cEEEccCcccccccCcccccccccEEEcccCccccccccccc-CCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCC
Q 043567          574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF-RSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGN  652 (911)
Q Consensus       574 ~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  652 (911)
                      +.++++++.++..+.. + ...++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..|..+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~-~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-L-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSS-C-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc-C-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            3455555555443221 1 12344455555555443333343 4445555555555554444444444555555555555


Q ss_pred             cccccCChhhhcCCCCCeEEcCCCcCC
Q 043567          653 NLEGQIPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       653 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      ++++..+..+..+++|+.|+|++|+++
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCccc
Confidence            554444444444444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.7e-17  Score=169.37  Aligned_cols=153  Identities=22%  Similarity=0.274  Sum_probs=129.5

Q ss_pred             cEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCC
Q 043567          597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN  676 (911)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N  676 (911)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45677777776 5666554  68899999999999877778899999999999999999888999999999999999999


Q ss_pred             cCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeec
Q 043567          677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVY  756 (911)
Q Consensus       677 ~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  756 (911)
                      ++++..+..|..                                                                    
T Consensus        91 ~l~~l~~~~f~~--------------------------------------------------------------------  102 (220)
T 2v9t_B           91 KITELPKSLFEG--------------------------------------------------------------------  102 (220)
T ss_dssp             CCCCCCTTTTTT--------------------------------------------------------------------
T ss_pred             cCCccCHhHccC--------------------------------------------------------------------
Confidence            988433333322                                                                    


Q ss_pred             cCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          757 NGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       757 ~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                          +++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++|.+..
T Consensus       103 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          103 ----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ----CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence                3477889999999998889999999999999999999999888889999999999999999975

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=4.7e-20  Score=214.76  Aligned_cols=217  Identities=19%  Similarity=0.149  Sum_probs=156.4

Q ss_pred             CCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcE
Q 043567          496 MNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQL  575 (911)
Q Consensus       496 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~  575 (911)
                      ..+++|+.|+|++|+++ .+|..++.+++|++|++++|......|..           +..+...+.+|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence            34556666666666665 55666666666666666544321111100           0112245567777777777777


Q ss_pred             EE-ccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcc
Q 043567          576 FS-VSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL  654 (911)
Q Consensus       576 L~-ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  654 (911)
                      |+ ++.|.+          ..|+.+.+++|.++...+      ..|+.|+|++|++++ +|. ++.+++|+.|+|++|++
T Consensus       414 L~~l~~n~~----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l  475 (567)
T 1dce_A          414 VDPMRAAYL----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL  475 (567)
T ss_dssp             HCGGGHHHH----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred             Ccchhhccc----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence            77 555543          345666677777764322      248999999999996 676 99999999999999999


Q ss_pred             cccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCC
Q 043567          655 EGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEER  734 (911)
Q Consensus       655 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~  734 (911)
                      + .+|..++.+++|+.|+|++|++++ +| .++.                                              
T Consensus       476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~----------------------------------------------  506 (567)
T 1dce_A          476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVAN----------------------------------------------  506 (567)
T ss_dssp             C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT----------------------------------------------
T ss_pred             c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC----------------------------------------------
Confidence            9 889999999999999999999986 55 4433                                              


Q ss_pred             CCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccC-CccccCCCCCCEEECCCCcCCcccccc---ccccC
Q 043567          735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEI-PSEIGELQEIPVLNMSHNFLSESIPES---FSNLK  810 (911)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~i~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~  810 (911)
                                                +++|+.|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|..   +..++
T Consensus       507 --------------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          507 --------------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             --------------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             --------------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence                                      347888999999999887 999999999999999999999876632   23478


Q ss_pred             CCCEEec
Q 043567          811 MIESLDL  817 (911)
Q Consensus       811 ~L~~LdL  817 (911)
                      +|+.||+
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            8888875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.3e-17  Score=195.41  Aligned_cols=192  Identities=22%  Similarity=0.310  Sum_probs=118.5

Q ss_pred             CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEE
Q 043567          450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELR  529 (911)
Q Consensus       450 ~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  529 (911)
                      ..+..+.+..+.+.+.++.   ..+++|+.|++++|.+...  +.+..+++|+.|+|++|++++..+  +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3455556666666644432   3556677777777666543  245566666666666666664433  55666666666


Q ss_pred             CcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccc
Q 043567          530 MSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP  609 (911)
Q Consensus       530 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~  609 (911)
                      |++|++++ +| .+..+++|+.|+|++|.+++ + ..+.                       .+++|+.|+|++|++++.
T Consensus        94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~-----------------------~l~~L~~L~Ls~N~l~~l  146 (605)
T 1m9s_A           94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLV-----------------------HLPQLESLYLGNNKITDI  146 (605)
T ss_dssp             CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGG-----------------------GCTTCSEEECCSSCCCCC
T ss_pred             CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-cccc-----------------------CCCccCEEECCCCccCCc
Confidence            66666653 22 45555555555555555543 1 2234                       445555555555555543


Q ss_pred             ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC
Q 043567          610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS  681 (911)
Q Consensus       610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~  681 (911)
                        ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++ + ..+..+++|+.|+|++|++++.
T Consensus       147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence              456677777777777777776555  7777788888888887775 3 3577788888888888877653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.4e-17  Score=174.91  Aligned_cols=170  Identities=29%  Similarity=0.399  Sum_probs=139.4

Q ss_pred             ccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcC
Q 043567          125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSK  204 (911)
Q Consensus       125 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~  204 (911)
                      +..+++|++|++++|.+.+.      +.+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+ ++  .+..
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~  110 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKD  110 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTT
T ss_pred             hhhcCcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhcc
Confidence            45678899999999988765      347788999999999999987655  8899999999999999874 33  4889


Q ss_pred             CCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCee
Q 043567          205 LKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYL  284 (911)
Q Consensus       205 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  284 (911)
                      +++|++|++++|++++ ++  .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+  +..+++|++|
T Consensus       111 l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence            9999999999999884 43  488899999999999999885  578889999999999999986554  8889999999


Q ss_pred             eccCCcCCCccChhhhcccccccEEEecCCC
Q 043567          285 ALFDNNFEGTFPLSSLANHSKLEVLLLSTRN  315 (911)
Q Consensus       285 ~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~  315 (911)
                      ++++|.+++ ++  .+..+++|+.|++++|.
T Consensus       184 ~L~~N~i~~-l~--~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          184 YLSKNHISD-LR--ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ECCSSCCCB-CG--GGTTCTTCSEEEEEEEE
T ss_pred             ECCCCcCCC-Ch--hhccCCCCCEEECcCCc
Confidence            999998874 44  47777777777776543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.3e-17  Score=166.34  Aligned_cols=113  Identities=25%  Similarity=0.329  Sum_probs=85.3

Q ss_pred             ccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567          762 DYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV  841 (911)
Q Consensus       762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  841 (911)
                      +.|+.|+|++|++++.+|..|+.+++|++|+|++|++++..|..|+++++|++|||++|++++.+|..+..++.|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            35667778888888777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCcCeecCCCCCCCCccCccccCCCCCCCCCc
Q 043567          842 SYNNLSGLIPDKGQFATFDESSYRGNLHLCGPT  874 (911)
Q Consensus       842 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  874 (911)
                      ++|+++|..|.......+....+.++...|+.|
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            888888877632111112223445666667655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=2.9e-17  Score=192.32  Aligned_cols=193  Identities=21%  Similarity=0.263  Sum_probs=159.1

Q ss_pred             ccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      +..+..+.+..+.+.+.++  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+..+  +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            4456667788888776554  568999999999999997 5653  5789999999999999988665  8899999999


Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS  584 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~  584 (911)
                      +|++|++++ +| .+..+++|++|+|++|++++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|++++|.+.
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            999999985 33 788999999999999999863  4688999999999999999864  67888889999999988888


Q ss_pred             cccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccccc
Q 043567          585 GFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV  633 (911)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~  633 (911)
                      +..| ...+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+.
T Consensus       167 ~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          167 DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             Cchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            8766 33778888888888888753  3577778888888888887754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2.3e-17  Score=165.40  Aligned_cols=155  Identities=15%  Similarity=0.210  Sum_probs=110.1

Q ss_pred             cCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCccccccccccc
Q 043567          615 FRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV  694 (911)
Q Consensus       615 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~  694 (911)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            44566777777777776 455 5677777777777777554  2346777777777777777776555544332      


Q ss_pred             CCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcc
Q 043567          695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKL  774 (911)
Q Consensus       695 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  774 (911)
                                                                                        ++.|+.|++++|++
T Consensus       111 ------------------------------------------------------------------l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A          111 ------------------------------------------------------------------LTSLTLLDISHSAH  124 (197)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSBC
T ss_pred             ------------------------------------------------------------------CCCCCEEEecCCcc
Confidence                                                                              23567788888888


Q ss_pred             cccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          775 TGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       775 ~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      ++..|..++.+++|++|++++|++.+.+| .++.+++|+.|++++|++++ +| .+..++.|++|++++|++.+
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            87778888888888888888887334566 58888888888888888886 44 67888888888888888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.8e-17  Score=172.73  Aligned_cols=171  Identities=18%  Similarity=0.241  Sum_probs=142.6

Q ss_pred             ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567          592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM  671 (911)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L  671 (911)
                      .+..+..+++++|.+++ ++ .+..+++|+.|++++|.++ .+| .+..+++|++|++++|++++..|  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            45667778888888874 33 5778899999999999998 456 78899999999999999986544  8899999999


Q ss_pred             EcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeecc
Q 043567          672 DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN  751 (911)
Q Consensus       672 ~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  751 (911)
                      +|++|++++ +|...                                                                 
T Consensus        91 ~L~~N~l~~-l~~~~-----------------------------------------------------------------  104 (263)
T 1xeu_A           91 SVNRNRLKN-LNGIP-----------------------------------------------------------------  104 (263)
T ss_dssp             ECCSSCCSC-CTTCC-----------------------------------------------------------------
T ss_pred             ECCCCccCC-cCccc-----------------------------------------------------------------
Confidence            999999874 22200                                                                 


Q ss_pred             ceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCC
Q 043567          752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLT  831 (911)
Q Consensus       752 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~  831 (911)
                              . +.|+.|++++|++++ +| .++.+++|++|+|++|++++. | .++.+++|+.||+++|++++.  ..+.
T Consensus       105 --------~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A          105 --------S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             --------C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred             --------c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhc
Confidence                    0 367889999999986 44 589999999999999999865 4 689999999999999999987  6789


Q ss_pred             CCCCCCeEeccCCcCeec
Q 043567          832 ELNFLSNFNVSYNNLSGL  849 (911)
Q Consensus       832 ~l~~L~~L~ls~N~l~g~  849 (911)
                      .++.|++|++++|++++.
T Consensus       170 ~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCCCCEEEEEEEEEECC
T ss_pred             cCCCCCEEeCCCCcccCC
Confidence            999999999999999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=4.7e-18  Score=204.24  Aligned_cols=225  Identities=18%  Similarity=0.207  Sum_probs=113.6

Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEc
Q 043567          499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV  578 (911)
Q Consensus       499 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l  578 (911)
                      +.++.|+|.+|.+.. .+..     .++.++|+.|.+.+              +++..|.+. ..|..+..++.|+.|++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            456777777777664 2222     24445555554432              233334443 44566666777777777


Q ss_pred             cCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccC
Q 043567          579 SENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI  658 (911)
Q Consensus       579 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i  658 (911)
                      ++|.+....+..+.+++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|+|++|.|+ .+
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence            77777654444457788888888888888 78888889999999999999998 77999999999999999999987 78


Q ss_pred             ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcc
Q 043567          659 PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFT  738 (911)
Q Consensus       659 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  738 (911)
                      |..|+.+++|+.|+|++|+++|.+|..+..+..                                               
T Consensus       309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----------------------------------------------  341 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----------------------------------------------  341 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----------------------------------------------
T ss_pred             ChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----------------------------------------------
Confidence            888999999999999999999888877655321                                               


Q ss_pred             cccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCC--------cCCccccccccccC
Q 043567          739 FDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN--------FLSESIPESFSNLK  810 (911)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N--------~l~g~ip~~l~~l~  810 (911)
                                              ....++|++|.++|.+|..      |..|++++|        .+.+.++..+.++.
T Consensus       342 ------------------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~  391 (727)
T 4b8c_D          342 ------------------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLA  391 (727)
T ss_dssp             ------------------------HHHHHHHHHCCCCCCCCCC-------------------------------------
T ss_pred             ------------------------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhccc
Confidence                                    1122678888888888764      445666666        45555555566666


Q ss_pred             CCCEEeccCCcCcc
Q 043567          811 MIESLDLSHNRLSG  824 (911)
Q Consensus       811 ~L~~LdLs~N~l~g  824 (911)
                      .++...+++|-+.+
T Consensus       392 ~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          392 KRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ----------CCCG
T ss_pred             ccceeeeecccccc
Confidence            77777777777753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=7.2e-17  Score=178.27  Aligned_cols=175  Identities=22%  Similarity=0.230  Sum_probs=123.9

Q ss_pred             CEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCcc-CcCCCcEEEccCcccccccchhhccCCCCcEEEccC
Q 043567          502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG-NLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE  580 (911)
Q Consensus       502 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~  580 (911)
                      +.+++++++++ .+|..+  .+.++.|+|++|++++..+..+. .+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45566666665 345433  23466777777777666666665 677777777777777765556677777777777777


Q ss_pred             cccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhh---hcCCCccEEEccCCcccc
Q 043567          581 NYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQI---NECSNLRFLLLRGNNLEG  656 (911)
Q Consensus       581 n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~  656 (911)
                      |++++..+..+ .+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+   ..+++|++|+|++|++++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            77776666655 67778888888888877777788888888888888888885433334   568888999999998886


Q ss_pred             cCChhhhcCCC--CCeEEcCCCcCC
Q 043567          657 QIPNQICQLTG--LGMMDLSHNKFN  679 (911)
Q Consensus       657 ~ip~~l~~l~~--L~~L~Ls~N~l~  679 (911)
                      ..+..+..++.  ++.|+|++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            55567777776  478899998876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=3.6e-18  Score=205.26  Aligned_cols=227  Identities=19%  Similarity=0.179  Sum_probs=114.1

Q ss_pred             CCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEc
Q 043567          523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYL  601 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~L  601 (911)
                      +.++.|+|.+|.+... +.     ..|+.++|+.|.+.              .++++.|.+. ..+..+ .++.|+.|+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hh-----hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence            4466667766666532 22     23445555555544              2234445444 334444 7788888888


Q ss_pred             ccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC
Q 043567          602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS  681 (911)
Q Consensus       602 s~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~  681 (911)
                      ++|.+. .+|..++.+++|++|+|++|+++ .+|..|+++++|++|+|++|+|+ .+|..++.+++|++|+|++|.++ .
T Consensus       232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence            888887 67777778888888888888888 77888888888888888888888 77888888888888888888886 6


Q ss_pred             CCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcC
Q 043567          682 IPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNL  761 (911)
Q Consensus       682 ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  761 (911)
                      +|..|+++                                                                        
T Consensus       308 lp~~~~~l------------------------------------------------------------------------  315 (727)
T 4b8c_D          308 LPWEFGNL------------------------------------------------------------------------  315 (727)
T ss_dssp             CCSSTTSC------------------------------------------------------------------------
T ss_pred             cChhhhcC------------------------------------------------------------------------
Confidence            67655443                                                                        


Q ss_pred             ccccEEEcccCcccccCCccccCCCCC-CEEECCCCcCCccccccccccCCCCEEeccCC--------cCcccCCCCCCC
Q 043567          762 DYMVGLDLSCNKLTGEIPSEIGELQEI-PVLNMSHNFLSESIPESFSNLKMIESLDLSHN--------RLSGQIPPKLTE  832 (911)
Q Consensus       762 ~~L~~LdLs~N~l~g~ip~~i~~l~~L-~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N--------~l~g~ip~~l~~  832 (911)
                      ++|+.|+|++|.|+|.+|..+..+... ..|+|++|.++|.+|..      |+.|++++|        .|.+.++..+.+
T Consensus       316 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred             CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence            356778888888888888877654322 34788888888888864      455666666        455555555667


Q ss_pred             CCCCCeEeccCCcCeecCCC
Q 043567          833 LNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       833 l~~L~~L~ls~N~l~g~iP~  852 (911)
                      +..+....+++|-+.+....
T Consensus       390 l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ------------CCCGGGCC
T ss_pred             ccccceeeeeccccccccCc
Confidence            77777888888888765543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=7.6e-17  Score=161.60  Aligned_cols=154  Identities=19%  Similarity=0.285  Sum_probs=114.6

Q ss_pred             ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeE
Q 043567          592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMM  671 (911)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L  671 (911)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..++.+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4566777777777776 455 5777788888888888665  33477788888888888888887777888888888888


Q ss_pred             EcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeecc
Q 043567          672 DLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKN  751 (911)
Q Consensus       672 ~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  751 (911)
                      ++++|++++..|..+..                                                               
T Consensus       118 ~Ls~n~i~~~~~~~l~~---------------------------------------------------------------  134 (197)
T 4ezg_A          118 DISHSAHDDSILTKINT---------------------------------------------------------------  134 (197)
T ss_dssp             ECCSSBCBGGGHHHHTT---------------------------------------------------------------
T ss_pred             EecCCccCcHhHHHHhh---------------------------------------------------------------
Confidence            88888887655544432                                                               


Q ss_pred             ceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcc
Q 043567          752 RYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG  824 (911)
Q Consensus       752 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g  824 (911)
                               ++.|+.|++++|++.+.+| .+..+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus       135 ---------l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          135 ---------LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ---------CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ---------CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence                     2467778888887444666 68889999999999999986 44 68889999999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=1.3e-16  Score=159.15  Aligned_cols=132  Identities=27%  Similarity=0.359  Sum_probs=92.0

Q ss_pred             CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCCh-hhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567          621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN-QICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR  699 (911)
Q Consensus       621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~  699 (911)
                      +.+++++|+++ .+|..+..  +|++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+          
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------   77 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence            45666666664 45554433  666777777776654443 36667777777777777776656554432          


Q ss_pred             cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567          700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP  779 (911)
Q Consensus       700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  779 (911)
                                                                                    ++|+.|+|++|++++..|
T Consensus        78 --------------------------------------------------------------~~L~~L~Ls~N~l~~~~~   95 (192)
T 1w8a_A           78 --------------------------------------------------------------SHIQELQLGENKIKEISN   95 (192)
T ss_dssp             --------------------------------------------------------------TTCCEEECCSCCCCEECS
T ss_pred             --------------------------------------------------------------ccCCEEECCCCcCCccCH
Confidence                                                                          356667777777777777


Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCC
Q 043567          780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP  827 (911)
Q Consensus       780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip  827 (911)
                      ..+..+++|++|+|++|++++.+|..++.+++|++|+|++|.+++..+
T Consensus        96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            777888888888888888888888888888888888888888887655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.6e-16  Score=166.85  Aligned_cols=170  Identities=22%  Similarity=0.323  Sum_probs=99.7

Q ss_pred             ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEE
Q 043567          474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLL  553 (911)
Q Consensus       474 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  553 (911)
                      +.++..++++.+.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+  +.         
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~---------   82 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LK---------   82 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GT---------
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hc---------
Confidence            344555555555554332  3444555555555555554 223 34445555555555555543222  44         


Q ss_pred             ccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccccc
Q 043567          554 MSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV  633 (911)
Q Consensus       554 L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~  633 (911)
                                     .+++|+.|++++|++++..+.. . ++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus        83 ---------------~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           83 ---------------DLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             ---------------TCSSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC
T ss_pred             ---------------cCCCCCEEECCCCccCCcCccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC
Confidence                           4444555555555444422211 2 5666666666666642 2 467777788888888877754


Q ss_pred             CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCC
Q 043567          634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGS  681 (911)
Q Consensus       634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~  681 (911)
                       | .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             3 577778888888888888755  5677778888888888877754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.2e-16  Score=170.76  Aligned_cols=102  Identities=14%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             cCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCc-
Q 043567          351 QFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLL-  429 (911)
Q Consensus       351 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~-  429 (911)
                      +++|+.+++++|+++ .+|...|.++++|+.+++.+| +.                         .|++..+..+++|+ 
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-------------------------~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-------------------------TIGQRVFSNCGRLAG  277 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-------------------------EECTTTTTTCTTCCE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-------------------------eehHHHhhCChhccE
Confidence            455666666655554 555555555555555555444 33                         34444444455565 


Q ss_pred             EEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceee
Q 043567          430 YMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLG  481 (911)
Q Consensus       430 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~  481 (911)
                      .+++.+ +++...+.+|.+|++|+.++++.|+++ .++...|.+|++|+.++
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            666655 455444556666666666666666665 55555566666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.2e-15  Score=146.74  Aligned_cols=85  Identities=22%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcc-ccccccccCCCCEEeccCCcCcccCC---CCCCCCCCCCe
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIP---PKLTELNFLSN  838 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~  838 (911)
                      +|+.|++++|++++.+|..++.+++|++|+|++|++++. .+..++.+++|+.|++++|++++..+   ..+..++.|++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            344455555555544555555555555555555555543 12455555555555555555554333   24555555556


Q ss_pred             EeccCCcCe
Q 043567          839 FNVSYNNLS  847 (911)
Q Consensus       839 L~ls~N~l~  847 (911)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            666555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=145.03  Aligned_cols=88  Identities=24%  Similarity=0.255  Sum_probs=69.1

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      +|+.|||++|++++..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|+|++..+..+..++.|++|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            45566667777766666677788888888888888888777788888888888888888886666678888888888888


Q ss_pred             CCcCeecC
Q 043567          843 YNNLSGLI  850 (911)
Q Consensus       843 ~N~l~g~i  850 (911)
                      +|++.+..
T Consensus       135 ~N~~~C~c  142 (193)
T 2wfh_A          135 ANPLYCDC  142 (193)
T ss_dssp             SSCEECSG
T ss_pred             CCCeecCC
Confidence            88887643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=6.8e-15  Score=160.23  Aligned_cols=276  Identities=13%  Similarity=0.093  Sum_probs=128.0

Q ss_pred             CCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccc--cccchhhhcCCCCcEEeccCcccCCcccHHHHhc----
Q 043567          400 HDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFE--GNIASSIAEMKELRFLDLSKNNFSGELSAALLTS----  473 (911)
Q Consensus       400 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~----  473 (911)
                      +.++++|.++++--. .--..+...+++|+.|||++|++.  ...+.   .++.++.+.+..|    .+|...|.+    
T Consensus        24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccc
Confidence            445666666653111 000111111456777777777665  11111   1122333444333    445555666    


Q ss_pred             ----ccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcC----cccCCcCccC
Q 043567          474 ----CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML----SGHIPHWMGN  545 (911)
Q Consensus       474 ----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l----~~~~p~~l~~  545 (911)
                          |++|+.+++.+ .++.....+|.+|++|+.+++.+|.++...+..|..+.++..+....+..    ...-...|..
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                77777777777 66666666777777777777777777666666666666666665554221    1112233444


Q ss_pred             cCCCc-EEEccCcccccccchhhc----cCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCC
Q 043567          546 LSYLE-VLLMSKNFFEGNIPVQLL----NHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSN  619 (911)
Q Consensus       546 l~~L~-~L~L~~n~l~~~~p~~l~----~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~  619 (911)
                      +..|+ .+.+....   .++..+.    ...++..+.+.++-......... .+++|+.+++++|+++..-+..|.+|++
T Consensus       175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence            44444 33332211   1111111    11222333332221110000000 2445555555555554333334555555


Q ss_pred             CCEEeCCCCcccccCchhhhcCCCcc-EEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567          620 LLTLDLRDNGFSGVIPHQINECSNLR-FLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI  689 (911)
Q Consensus       620 L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l  689 (911)
                      |+.+++.+| +...-+.+|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++..-+..|.++
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            555555554 4433344455555555 555544 4443334455555555555555555543333344443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.4e-14  Score=142.40  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      .|+.|++++|++++..+..++.+++|++|+|++|++++..|..++.+++|++||+++|++++..+..+..++.|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            55667777777775555667888889999999999988777778888999999999999987666667888999999999


Q ss_pred             CCcCeecCCC
Q 043567          843 YNNLSGLIPD  852 (911)
Q Consensus       843 ~N~l~g~iP~  852 (911)
                      +|+++|..|.
T Consensus       133 ~N~~~~~~~~  142 (177)
T 2o6r_A          133 TNPWDCSCPR  142 (177)
T ss_dssp             SSCBCCCHHH
T ss_pred             CCCeeccCcc
Confidence            9999887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=3.3e-15  Score=142.29  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=38.6

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcc-ccccccccCCCCEEeccCCcCcccCC---CCCCCCCCCCe
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSES-IPESFSNLKMIESLDLSHNRLSGQIP---PKLTELNFLSN  838 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~  838 (911)
                      .|+.|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|++||+++|++++..+   ..+..++.|++
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            334444444444444444444455555555555555442 23445555555555555555554333   24444555555


Q ss_pred             Eecc
Q 043567          839 FNVS  842 (911)
Q Consensus       839 L~ls  842 (911)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            5544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=2.6e-14  Score=142.28  Aligned_cols=129  Identities=24%  Similarity=0.409  Sum_probs=101.5

Q ss_pred             CEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCcccc
Q 043567          621 LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRY  700 (911)
Q Consensus       621 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~  700 (911)
                      +.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..+..+++|+.|+|++|++++..|..|..            
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------   76 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence            46777777776 5565543  47788888888887 67777888888888888888887655554443            


Q ss_pred             ccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCc
Q 043567          701 RLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPS  780 (911)
Q Consensus       701 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  780 (911)
                                                                                  ++.|+.|+|++|++++..|.
T Consensus        77 ------------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~   96 (193)
T 2wfh_A           77 ------------------------------------------------------------MTQLLTLILSYNRLRCIPPR   96 (193)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCSSCCCBCCTT
T ss_pred             ------------------------------------------------------------CCCCCEEECCCCccCEeCHH
Confidence                                                                        23677788899998887788


Q ss_pred             cccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCccc
Q 043567          781 EIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ  825 (911)
Q Consensus       781 ~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~  825 (911)
                      .|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus        97 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           97 TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            899999999999999999977777899999999999999998753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.9e-14  Score=140.04  Aligned_cols=131  Identities=19%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             CCCcEEECcCCcCc-ccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEE
Q 043567          523 KKLVELRMSSNMLS-GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLY  600 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~  600 (911)
                      ++|++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+ .+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34555555555554 44444445555555555555554432  333444444444444444433333222 233333334


Q ss_pred             cccCccccc-ccccccCCCCCCEEeCCCCcccccCc---hhhhcCCCccEEEccCCccc
Q 043567          601 LQKNSLSGP-IPIALFRSSNLLTLDLRDNGFSGVIP---HQINECSNLRFLLLRGNNLE  655 (911)
Q Consensus       601 Ls~n~l~~~-~p~~l~~~~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~  655 (911)
                      +++|++++. .+..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            444433321 11344444445555555554443322   24444444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=3.6e-14  Score=139.36  Aligned_cols=133  Identities=23%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccc
Q 043567          620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDR  699 (911)
Q Consensus       620 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~  699 (911)
                      .+.+++++|+++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..|..+..           
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-----------   74 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence            345666666665 344333  246677777777776555555666777777777777766433332222           


Q ss_pred             cccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCC
Q 043567          700 YRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIP  779 (911)
Q Consensus       700 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip  779 (911)
                                                                                   ++.|+.|++++|++++..+
T Consensus        75 -------------------------------------------------------------l~~L~~L~l~~N~l~~~~~   93 (177)
T 2o6r_A           75 -------------------------------------------------------------LTKLTILYLHENKLQSLPN   93 (177)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCSSCCCCCCT
T ss_pred             -------------------------------------------------------------CCccCEEECCCCCccccCH
Confidence                                                                         2356677888888876666


Q ss_pred             ccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCC
Q 043567          780 SEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP  827 (911)
Q Consensus       780 ~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip  827 (911)
                      ..++.+++|++|+|++|++++..+..+..+++|+.|++++|.+++..|
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            667888888888888888887666667888888888888888887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=2.1e-14  Score=136.65  Aligned_cols=127  Identities=20%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             CCCcEEECcCCcCc-ccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEc
Q 043567          523 KKLVELRMSSNMLS-GHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYL  601 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L  601 (911)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..                       +++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-----------------------l~~L~~L~L   71 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-----------------------LNKLKKLEL   71 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-----------------------CTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-----------------------CCCCCEEEC
Confidence            45666666666665 55666566666666666666665533  33444                       445555555


Q ss_pred             ccCcccccccccccCCCCCCEEeCCCCccccc-CchhhhcCCCccEEEccCCcccccCC---hhhhcCCCCCeEEcC
Q 043567          602 QKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV-IPHQINECSNLRFLLLRGNNLEGQIP---NQICQLTGLGMMDLS  674 (911)
Q Consensus       602 s~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ip---~~l~~l~~L~~L~Ls  674 (911)
                      ++|.+++.+|..+..+++|++|++++|++++. .|..+..+++|++|++++|++++..+   ..+..+++|+.||++
T Consensus        72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555555555555666677777777766652 23566677777777777777765544   456677777777665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=4e-13  Score=149.43  Aligned_cols=264  Identities=11%  Similarity=0.109  Sum_probs=146.6

Q ss_pred             CCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCC
Q 043567          128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKN  207 (911)
Q Consensus       128 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  207 (911)
                      +..++.+.+.++ ++.+..    .+|.++ +|+.+++..+ +......+|.++ +|+.+.+.. .+. .+....|.++++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~----~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~  181 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPK----DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYN  181 (401)
T ss_dssp             CSSCSEEECCTT-CCEECT----TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTT
T ss_pred             cCCccEEEECCc-cCEehH----hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCccc
Confidence            345555555432 333332    344443 4666666554 444444455553 466666654 333 333455666666


Q ss_pred             CCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeecc
Q 043567          208 LEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALF  287 (911)
Q Consensus       208 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  287 (911)
                      |+.+++++|.++ .++..+|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+.
T Consensus       182 L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp  256 (401)
T 4fdw_A          182 LKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP  256 (401)
T ss_dssp             CCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred             CCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence            666666666665 55555555 456666666533 55545556666666666666543 44334444555 566666663


Q ss_pred             CCcCCCccChhhhcccccccEEEecCCCc----cccccccCcCCCCCceEEECCCCCCCCCChhhh-ccCCCCEEECCCC
Q 043567          288 DNNFEGTFPLSSLANHSKLEVLLLSTRNN----MLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLL-HQFDLKYLDLSHN  362 (911)
Q Consensus       288 ~n~l~~~~p~~~l~~l~~L~~L~L~~~~~----~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~-~~~~L~~L~Ls~n  362 (911)
                      + .++ .++...|.+|++|+.+.+..+..    ...+....|..+.+|+.+.+. +.+..++...+ .+.+|+.+.+..+
T Consensus       257 ~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          257 N-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             T-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             C-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            2 233 44445666666666666654322    123555566666677777776 34666655443 4467777777554


Q ss_pred             CCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCC-CCccEEEccCCc
Q 043567          363 DLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKH-DFLHHLDISSNN  412 (911)
Q Consensus       363 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~ls~n~  412 (911)
                       ++ .+....|.++ +|+.+.+.+|.........+..+ ..++.|.+..+.
T Consensus       334 -l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          334 -VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence             43 5666666677 77777777776655443344444 366777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=2.4e-16  Score=158.09  Aligned_cols=155  Identities=21%  Similarity=0.294  Sum_probs=106.9

Q ss_pred             ccCCCCCCEEeCCCCcccccCch------hhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccc
Q 043567          614 LFRSSNLLTLDLRDNGFSGVIPH------QINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT  687 (911)
Q Consensus       614 l~~~~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  687 (911)
                      +.....++.++++.+.++|.+|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            33445566666666666666655      77777788888888887775 66 7777778888888877776 4454332


Q ss_pred             cccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEE
Q 043567          688 NITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL  767 (911)
Q Consensus       688 ~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  767 (911)
                      .                                                                        ++.|+.|
T Consensus        91 ~------------------------------------------------------------------------~~~L~~L   98 (198)
T 1ds9_A           91 V------------------------------------------------------------------------ADTLEEL   98 (198)
T ss_dssp             H------------------------------------------------------------------------HHHCSEE
T ss_pred             c------------------------------------------------------------------------CCcCCEE
Confidence            2                                                                        1356678


Q ss_pred             EcccCcccccCCccccCCCCCCEEECCCCcCCcccc-ccccccCCCCEEeccCCcCcccCCCC----------CCCCCCC
Q 043567          768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIP-ESFSNLKMIESLDLSHNRLSGQIPPK----------LTELNFL  836 (911)
Q Consensus       768 dLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L  836 (911)
                      ++++|++++ +| .++.+++|++|++++|++++..+ ..++.+++|++|++++|++++.+|..          +..++.|
T Consensus        99 ~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A           99 WISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             EEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             ECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence            888888875 45 57777888888888888875332 46777888888888888888776654          6677777


Q ss_pred             CeEeccCCcCe
Q 043567          837 SNFNVSYNNLS  847 (911)
Q Consensus       837 ~~L~ls~N~l~  847 (911)
                      ++||  +|.++
T Consensus       177 ~~Ld--~~~i~  185 (198)
T 1ds9_A          177 KKLD--GMPVD  185 (198)
T ss_dssp             SEEC--CGGGT
T ss_pred             EEEC--CcccC
Confidence            7776  45544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=1.2e-12  Score=146.37  Aligned_cols=315  Identities=13%  Similarity=0.056  Sum_probs=153.1

Q ss_pred             ccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccc
Q 043567          196 SRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSII  275 (911)
Q Consensus       196 ~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  275 (911)
                      .+...+|.++++|+.+.+..+ ++ .|+..+|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +......+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence            355567888888888888744 55 677777888888888888654 55555567777777777666543 333334455


Q ss_pred             cCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCC
Q 043567          276 SNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLK  355 (911)
Q Consensus       276 ~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~  355 (911)
                      .++..++........   .+....|.++++|+.+.+..  ....+....|..+                       .+|+
T Consensus       137 ~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c-----------------------~~L~  188 (394)
T 4fs7_A          137 KGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPD--SMETLHNGLFSGC-----------------------GKLK  188 (394)
T ss_dssp             TTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTC-----------------------TTCC
T ss_pred             ecccccccccCcccc---ccchhhhcccCCCcEEecCC--ccceeccccccCC-----------------------CCce
Confidence            555433332222211   22223455555555555532  1222333333333                       3444


Q ss_pred             EEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEccc
Q 043567          356 YLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN  435 (911)
Q Consensus       356 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  435 (911)
                      .+++..+ ++ .++...+.++..|+.+.+..+...-.  ........|+.+.+.... + .+....+..+..++.+.+..
T Consensus       189 ~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~--~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          189 SIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLG--DFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             BCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC--TTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECC
T ss_pred             EEEcCCC-ce-EeCchhhccccccceeecCCCceEee--hhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCC
Confidence            4444433 22 34444444555555555444322100  011123344555443321 1 22223333355555555554


Q ss_pred             CccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccc
Q 043567          436 NHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI  515 (911)
Q Consensus       436 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  515 (911)
                      +... .....+..+..++.+....+.    ++...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..-
T Consensus       263 ~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          263 NKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             TTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             Ccce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence            4222 333345555555555544432    23333445555555555432 33333444555555555555432 33333


Q ss_pred             cccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccC
Q 043567          516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSK  556 (911)
Q Consensus       516 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  556 (911)
                      ...|.++.+|+.+++..+ ++..-..+|.+|++|+.+++..
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            444555555555555443 3333334455555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=1.6e-12  Score=145.30  Aligned_cols=334  Identities=11%  Similarity=0.121  Sum_probs=188.4

Q ss_pred             cccccccccCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCcc
Q 043567          118 LSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSR  197 (911)
Q Consensus       118 ~~~~~s~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  197 (911)
                      ..+...+|..+.+|+.+++..+ ++.+..    .+|.++.+|+.+++..+ +.......|.++++|+.+.+..+- . .+
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~-~i  131 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-K-SI  131 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-C-EE
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-e-ee
Confidence            4455567888888888888643 555444    57777888888887654 544455667777777776665442 2 23


Q ss_pred             ChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccC
Q 043567          198 TKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISN  277 (911)
Q Consensus       198 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  277 (911)
                      ....|.++..++........   .+...+|.+|++|+.+.+.++ +..+...+|.++.+|+.+++..+ ++......|.+
T Consensus       132 ~~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~  206 (394)
T 4fs7_A          132 GVEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE  206 (394)
T ss_dssp             CTTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred             cceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence            33455555544333332222   334455777777777777544 33334456666777777766654 44344455666


Q ss_pred             CCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEE
Q 043567          278 LTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYL  357 (911)
Q Consensus       278 l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L  357 (911)
                      +..|+.+.+..+...  +. ........|+.+.+..  ....+....+....                       .++.+
T Consensus       207 ~~~L~~i~~~~~~~~--i~-~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~-----------------------~l~~~  258 (394)
T 4fs7_A          207 CILLENMEFPNSLYY--LG-DFALSKTGVKNIIIPD--SFTELGKSVFYGCT-----------------------DLESI  258 (394)
T ss_dssp             CTTCCBCCCCTTCCE--EC-TTTTTTCCCCEEEECT--TCCEECSSTTTTCS-----------------------SCCEE
T ss_pred             ccccceeecCCCceE--ee-hhhcccCCCceEEECC--Cceecccccccccc-----------------------cceeE
Confidence            666666666554321  11 1222334455554431  12223333344444                       44555


Q ss_pred             ECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCc
Q 043567          358 DLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNH  437 (911)
Q Consensus       358 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  437 (911)
                      .+..+..  .+....+..+..++.+......+.   ...+..+.+|+.+.+..+ ++ .|++..+..+.+|+.+++.++ 
T Consensus       259 ~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-  330 (394)
T 4fs7_A          259 SIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-  330 (394)
T ss_dssp             EECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-
T ss_pred             EcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-
Confidence            5444322  233334445555555555444322   123445666666666544 33 455555555777777777643 


Q ss_pred             cccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEE
Q 043567          438 FEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL  504 (911)
Q Consensus       438 l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  504 (911)
                      ++..-..+|.+|++|+.+++..+ ++ .|+...|.+|.+|+.+++..+- . .+..+|.++++|+.+
T Consensus       331 v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          331 VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            55445567778888888888766 54 6777777788888888876542 1 223457777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=1.4e-12  Score=144.91  Aligned_cols=268  Identities=11%  Similarity=0.095  Sum_probs=158.0

Q ss_pred             CCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccE
Q 043567          229 ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEV  308 (911)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~  308 (911)
                      .+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+..                    
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--------------------  166 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--------------------  166 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--------------------
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--------------------
Confidence            345566666643 3444444555554 5666666544 443333444442 344444432                    


Q ss_pred             EEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCc
Q 043567          309 LLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNS  388 (911)
Q Consensus       309 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~  388 (911)
                             .+..+....|..+.+|+.+++.+|.+..++...+.+.+|+.+.+..+ ++ .++...|.++++|+.+.+..+ 
T Consensus       167 -------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-  236 (401)
T 4fdw_A          167 -------TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-  236 (401)
T ss_dssp             -------TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-
T ss_pred             -------CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-
Confidence                   33344445566666777777777788888877777788888888754 44 677777777777777777653 


Q ss_pred             cccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccC----C
Q 043567          389 FTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFS----G  464 (911)
Q Consensus       389 l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----g  464 (911)
                      ++                         .++...+.. .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+.    .
T Consensus       237 l~-------------------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          237 VS-------------------------TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             CC-------------------------EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             cc-------------------------Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence            22                         222222222 345555552 2333333445555666666665555432    1


Q ss_pred             cccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCcc
Q 043567          465 ELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG  544 (911)
Q Consensus       465 ~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  544 (911)
                      .++...|.+|++|+.+.+. +.+......+|.++++|+.+.+..+ ++..-...|..+ +|+.+++.+|.+....+..|.
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~  366 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY  366 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred             EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence            3555556666677777666 3355555566777777777777544 554555667777 788888877777655556666


Q ss_pred             CcC-CCcEEEccCcccc
Q 043567          545 NLS-YLEVLLMSKNFFE  560 (911)
Q Consensus       545 ~l~-~L~~L~L~~n~l~  560 (911)
                      .++ .++.|.+..+.+.
T Consensus       367 ~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          367 GFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSCTTCCEEEECGGGHH
T ss_pred             CCCCCccEEEeCHHHHH
Confidence            663 6777777766543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=4.8e-15  Score=148.54  Aligned_cols=131  Identities=21%  Similarity=0.282  Sum_probs=77.8

Q ss_pred             CccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCC
Q 043567          542 WMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNL  620 (911)
Q Consensus       542 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L  620 (911)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+ .+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            44455555555555555543 44 45555555555555555553 23333 44566666666666664 34 46666677


Q ss_pred             CEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccCChh----------hhcCCCCCeEEcCCCcCC
Q 043567          621 LTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQIPNQ----------ICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       621 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~  679 (911)
                      +.|++++|++++..+ ..+..+++|++|++++|++.+.+|..          +..+++|+.||  +|.++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            777777777764322 35677777777777777777665542          67778888776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=7.1e-13  Score=128.90  Aligned_cols=91  Identities=21%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      .++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|+.+++|++|||++|+|++..|..+..++.|++|+|+
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            56789999999998889999999999999999999998888888999999999999999998877789999999999999


Q ss_pred             CCcCeecCCCC
Q 043567          843 YNNLSGLIPDK  853 (911)
Q Consensus       843 ~N~l~g~iP~~  853 (911)
                      +|++++..+..
T Consensus       111 ~N~~~c~c~~l  121 (170)
T 3g39_A          111 NNPWDCACSDI  121 (170)
T ss_dssp             SSCBCTTBGGG
T ss_pred             CCCCCCCchhH
Confidence            99999876643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=9.7e-13  Score=128.92  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=35.2

Q ss_pred             cCCCCCCEEeCCCCcccccCch--hhhcCCCccEEEccCCcccccCChh----hhcCCCCCeEEcCCCcCC
Q 043567          615 FRSSNLLTLDLRDNGFSGVIPH--QINECSNLRFLLLRGNNLEGQIPNQ----ICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       615 ~~~~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~  679 (911)
                      ..+++|++|++++|+++ .+|.  .+..+++|++|++++|+++ .+|..    +..+++|+.||+++|...
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            44555555555555553 3343  4555666666666666665 34443    566666666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=1.1e-12  Score=128.62  Aligned_cols=133  Identities=19%  Similarity=0.159  Sum_probs=111.3

Q ss_pred             cccCCCCCcEEECcCCcCcccCCcCccCcC-CCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccc-cccc
Q 043567          518 GLLKSKKLVELRMSSNMLSGHIPHWMGNLS-YLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NISS  595 (911)
Q Consensus       518 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~  595 (911)
                      .+..+.+|++|++++|+++ .+|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+ .+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4567889999999999998 4554 44444 999999999999864  678889999999999999998777765 8899


Q ss_pred             ccEEEcccCcccccccc--cccCCCCCCEEeCCCCcccccCchh----hhcCCCccEEEccCCcccc
Q 043567          596 VEHLYLQKNSLSGPIPI--ALFRSSNLLTLDLRDNGFSGVIPHQ----INECSNLRFLLLRGNNLEG  656 (911)
Q Consensus       596 L~~L~Ls~n~l~~~~p~--~l~~~~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~  656 (911)
                      |++|++++|+++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|++|++++|.+..
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999995 5665  7888999999999999998 45664    8899999999999998763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=2.1e-12  Score=125.92  Aligned_cols=90  Identities=22%  Similarity=0.210  Sum_probs=82.0

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEecc
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVS  842 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  842 (911)
                      .|+.|+|++|+|++.+|..|+.+++|++|+|++|+|++..+..|+++++|++|||++|+|++..|..+..++.|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            57789999999999889999999999999999999998777778999999999999999997776679999999999999


Q ss_pred             CCcCeecCCC
Q 043567          843 YNNLSGLIPD  852 (911)
Q Consensus       843 ~N~l~g~iP~  852 (911)
                      +|++....+.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.2e-11  Score=120.66  Aligned_cols=106  Identities=16%  Similarity=0.237  Sum_probs=92.2

Q ss_pred             cEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567          765 VGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN  844 (911)
Q Consensus       765 ~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  844 (911)
                      +.+|+++|+++ .+|..+.  +.|++|+|++|+|++.+|..|+++++|+.|||++|+|++..+..|..++.|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56999999997 8898775  89999999999999999999999999999999999999876667899999999999999


Q ss_pred             cCeecCCC-CCCCCccCccccCCCCCCCCC
Q 043567          845 NLSGLIPD-KGQFATFDESSYRGNLHLCGP  873 (911)
Q Consensus       845 ~l~g~iP~-~~~~~~~~~~~~~gn~~lcg~  873 (911)
                      ++++..|. -..+..+....+.+|+.-|..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99987664 345666666778899887754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=2.9e-10  Score=126.76  Aligned_cols=311  Identities=10%  Similarity=0.093  Sum_probs=148.3

Q ss_pred             ccChhhhcCCC-CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCc---CCCCCCcccCCCCCCcEEEccCCcCCccC
Q 043567          196 SRTKQGLSKLK-NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNN---IEDHLPNCLNNMTRLKVLDISFNQLSGSF  271 (911)
Q Consensus       196 ~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  271 (911)
                      .+...+|.+++ .|+.+.+..+ ++ .|...+|.+|++|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++...
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            34456677774 5888888754 54 6777778888888888887653   55545566777777776666543 34344


Q ss_pred             cccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCCCCChhhhcc
Q 043567          272 PSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQ  351 (911)
Q Consensus       272 p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~  351 (911)
                      ...|..+.+|+.+.+..+. . .++...+..+..|+.+.+.                         . .+..+....+..
T Consensus       130 ~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~-------------------------~-~~~~I~~~aF~~  181 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLP-------------------------D-SVTAIEERAFTG  181 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECC-------------------------T-TCCEECTTTTTT
T ss_pred             hhhhhhhccccccccccee-e-eecccceeccccccccccc-------------------------c-eeeEeccccccc
Confidence            4556666666666665432 1 3443455555555555543                         2 133333333344


Q ss_pred             CCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEE
Q 043567          352 FDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYM  431 (911)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L  431 (911)
                      .+|+.+.+..+..  .+....+.++..++.........................-...       .+     ....+..+
T Consensus       182 ~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~  247 (394)
T 4gt6_A          182 TALTQIHIPAKVT--RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR-------YP-----SQREDPAF  247 (394)
T ss_dssp             CCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE-------CC-----TTCCCSEE
T ss_pred             cceeEEEECCccc--ccccchhhhccccceecccccccccccceeecccccccccccc-------cc-----cccccceE
Confidence            4555555544322  2333334455555555444333221100000000000000000       00     01122233


Q ss_pred             EcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccc
Q 043567          432 DMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKF  511 (911)
Q Consensus       432 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  511 (911)
                      .+.+ .++..-..+|..+..|+.+.+..+..  .+....+..+.+|+.+.+. +.++......|.++.+|+.+++..+ +
T Consensus       248 ~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v  322 (394)
T 4gt6_A          248 KIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I  322 (394)
T ss_dssp             ECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             EcCC-cceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-c
Confidence            3321 12222334555666666666654432  3444444555555555553 2333333344555555555555433 3


Q ss_pred             cccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCc
Q 043567          512 SGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN  557 (911)
Q Consensus       512 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  557 (911)
                      +......|..+.+|+.+.+..+ ++..-..+|.+|++|+.+++.++
T Consensus       323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            3233344555555555555432 33223344555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=1.7e-11  Score=119.10  Aligned_cols=108  Identities=21%  Similarity=0.222  Sum_probs=83.9

Q ss_pred             cEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCc
Q 043567          574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN  653 (911)
Q Consensus       574 ~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  653 (911)
                      +.+++++|.++..+...  .+.|++|++++|++++..|..+.++++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            45555555555432222  2567778888888887778888888999999999999997777778899999999999999


Q ss_pred             ccccCChhhhcCCCCCeEEcCCCcCCCCCC
Q 043567          654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIP  683 (911)
Q Consensus       654 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip  683 (911)
                      +++..+..+..+++|+.|+|++|+++...+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            997777778899999999999999886543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.22  E-value=6.6e-10  Score=123.91  Aligned_cols=321  Identities=12%  Similarity=0.127  Sum_probs=173.3

Q ss_pred             ccccccccccCCC-CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCC---CCccchhhhcCCCCCCEEEcCCcc
Q 043567          117 VLSLNVSLFHPFE-ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY---FDDSIFLYLNALTSLTTLILRENN  192 (911)
Q Consensus       117 ~~~~~~s~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~Ls~n~  192 (911)
                      |..+...+|..++ .|+.+.+..+ ++.+..    .+|.++.+|+.+.++.|.   +......+|.++.+|+.+.+..+ 
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~----~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-  124 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGS----NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-  124 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECT----TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhH----HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence            4456666788775 5888888754 555544    688889999998887653   55555677888888888777654 


Q ss_pred             cCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCc
Q 043567          193 IQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP  272 (911)
Q Consensus       193 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  272 (911)
                      +. .+....|..+.+|+.+.+..+. . .++..+|..+..|+.+.+..+ ++.+...+|.. .+|+.+.+..+- .....
T Consensus       125 ~~-~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~  198 (394)
T 4gt6_A          125 VT-EIDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGT  198 (394)
T ss_dssp             CS-EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECT
T ss_pred             cc-eehhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-ccccc
Confidence            22 4555678888888888887543 2 566667888888888888654 44444455544 568888876543 33445


Q ss_pred             ccccCCCCCCeeeccCCcCCCccChhhhcc-------------cccccEEEecCCCccccccccCcCCCCCceEEECCCC
Q 043567          273 SIISNLTSLEYLALFDNNFEGTFPLSSLAN-------------HSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNC  339 (911)
Q Consensus       273 ~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~-------------l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n  339 (911)
                      .+|..+.+++......+... .+....+..             ...+..+.+  .+....+...+|..+..|+.+.+...
T Consensus       199 ~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--p~~v~~i~~~aF~~c~~L~~i~lp~~  275 (394)
T 4gt6_A          199 NAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKI--PNGVARIETHAFDSCAYLASVKMPDS  275 (394)
T ss_dssp             TTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEEC--CTTEEEECTTTTTTCSSCCEEECCTT
T ss_pred             chhhhccccceecccccccc-cccceeecccccccccccccccccccceEEc--CCcceEcccceeeecccccEEecccc
Confidence            66777777777766554432 111001111             111111111  11222233334444444555544433


Q ss_pred             CCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCCh
Q 043567          340 SLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQ  419 (911)
Q Consensus       340 ~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~  419 (911)
                      ..                         .+....+.+++.|+.+.+.. .++......+..+.+|+.+++..+ ++ .|.+
T Consensus       276 ~~-------------------------~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~  327 (394)
T 4gt6_A          276 VV-------------------------SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILD  327 (394)
T ss_dssp             CC-------------------------EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred             cc-------------------------eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence            22                         23333444444455444432 222222233344555555555433 22 3444


Q ss_pred             hHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCc
Q 043567          420 DMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDN  485 (911)
Q Consensus       420 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n  485 (911)
                      ..+..+.+|+.+.+..+ ++..-..+|.+|++|+.+++.++...  +  ..+..+.+|+.+.+..+
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H--HTCBCCCCC--------
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h--hhhhccCCCCEEEeCCC
Confidence            44445666666666543 44344456666666666666655432  1  12234555666655444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=2.3e-12  Score=141.84  Aligned_cols=136  Identities=18%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             ccCCcEEEcccCccccccchhhhcC-----CCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCC----
Q 043567          425 LQKLLYMDMSNNHFEGNIASSIAEM-----KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY----  495 (911)
Q Consensus       425 l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----  495 (911)
                      ++.|++|++++|.++......+...     ++|++|+|++|.++......+...+++|+.|+|++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4566666666666664444433332     5677777777766543333344445556666666665544322222    


Q ss_pred             -CCCCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCccc----CCcCccCcCCCcEEEccCcccc
Q 043567          496 -MNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSGH----IPHWMGNLSYLEVLLMSKNFFE  560 (911)
Q Consensus       496 -~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  560 (911)
                       ...++|++|+|++|.++..    ++..+...++|++|+|++|.+++.    ++..+...++|+.|+|++|.++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence             1235566666666666532    223334455566666666655432    1233344445555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=8.4e-11  Score=128.86  Aligned_cols=87  Identities=21%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             ccccEEEccc-CcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEe
Q 043567          762 DYMVGLDLSC-NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFN  840 (911)
Q Consensus       762 ~~L~~LdLs~-N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  840 (911)
                      ++|+.|+|++ |+|++..|..|++|++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |++|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3678899996 999988889999999999999999999999999999999999999999999977666677666 99999


Q ss_pred             ccCCcCeec
Q 043567          841 VSYNNLSGL  849 (911)
Q Consensus       841 ls~N~l~g~  849 (911)
                      |++|++...
T Consensus       110 l~~N~~~c~  118 (347)
T 2ifg_A          110 LSGNPLHCS  118 (347)
T ss_dssp             CCSSCCCCC
T ss_pred             eeCCCccCC
Confidence            999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=4e-12  Score=139.90  Aligned_cols=143  Identities=20%  Similarity=0.180  Sum_probs=79.6

Q ss_pred             CCCcEEECcCCcCcccCCcCc-cCcCCCcEEEccCcccccccchhh-----ccCCCCcEEEccCccccccc----Cccc-
Q 043567          523 KKLVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQL-----LNHRRLQLFSVSENYLSGFM----TTSF-  591 (911)
Q Consensus       523 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l-----~~~~~L~~L~ls~n~l~~~~----~~~~-  591 (911)
                      ++|++|+|++|.++......+ ..+++|+.|+|++|.++......+     ...++|+.|++++|.++...    +..+ 
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455555555555543221111 223455666666665553332222     12455666666666654321    1111 


Q ss_pred             ccccccEEEcccCccccc----ccccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccccCChhhh
Q 043567          592 NISSVEHLYLQKNSLSGP----IPIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQIPNQIC  663 (911)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~  663 (911)
                      ..++|++|+|++|.++..    ++..+...++|++|+|++|.+++.    ++..+...++|++|+|++|.|+..-...+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            355666666666666542    345566667788888888877642    344455667888888888887765555554


Q ss_pred             cC
Q 043567          664 QL  665 (911)
Q Consensus       664 ~l  665 (911)
                      .+
T Consensus       261 ~~  262 (372)
T 3un9_A          261 DL  262 (372)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.2e-10  Score=127.51  Aligned_cols=105  Identities=20%  Similarity=0.236  Sum_probs=90.6

Q ss_pred             EEEcccC-cccccCCccccCCCCCCEEECCC-CcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccC
Q 043567          766 GLDLSCN-KLTGEIPSEIGELQEIPVLNMSH-NFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSY  843 (911)
Q Consensus       766 ~LdLs~N-~l~g~ip~~i~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~  843 (911)
                      .++++++ +++ .||. |+.+++|+.|+|++ |+|++..|..|++|++|+.|||++|+|++.+|..|.+|+.|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4789998 898 6898 99999999999996 999998889999999999999999999999999999999999999999


Q ss_pred             CcCeecCCCCCCCCccCccccCCCCCCCC
Q 043567          844 NNLSGLIPDKGQFATFDESSYRGNLHLCG  872 (911)
Q Consensus       844 N~l~g~iP~~~~~~~~~~~~~~gn~~lcg  872 (911)
                      |+|++..|.......+....+.+|+.-|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCC
Confidence            99998766543222355566778887763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.94  E-value=4.8e-08  Score=108.16  Aligned_cols=95  Identities=9%  Similarity=0.046  Sum_probs=45.0

Q ss_pred             hccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCE
Q 043567          424 ILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQY  503 (911)
Q Consensus       424 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  503 (911)
                      .+.+|+.+.+..+ +.......|..|++|+.+.+.++.++ .|+...|.+|.+|+.+.+..+ ++.....+|.++.+|+.
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            3444555544332 22223334455555555555555444 455445555555555555432 33333445566666666


Q ss_pred             EEccCccccccccccccCC
Q 043567          504 LYLENNKFSGKIEEGLLKS  522 (911)
Q Consensus       504 L~L~~n~l~~~~p~~l~~l  522 (911)
                      +.+..+ ++..-..+|.++
T Consensus       338 i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          338 ISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CCCCTT-CCEECTTTTTTS
T ss_pred             EEECCc-cCEEchhHhhCC
Confidence            665433 332333344443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.84  E-value=9.4e-08  Score=105.82  Aligned_cols=318  Identities=11%  Similarity=0.050  Sum_probs=182.9

Q ss_pred             hhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCC
Q 043567          175 LYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNM  254 (911)
Q Consensus       175 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  254 (911)
                      +++....+|+.+.+... ++ .++..+|.++.+|+.+++..+ ++ .|+..+|.++ +|+.+.+..+ ++.+...+|..+
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT  113 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC
T ss_pred             cccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC
Confidence            45666778888888654 33 455677888888888888754 55 6777778887 5777776543 444444556554


Q ss_pred             CCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEE
Q 043567          255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL  334 (911)
Q Consensus       255 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  334 (911)
                       +|+.+.+..+ +.......|.++ +|+.+.+..+ ++ .+....+.++..++...+...+............       
T Consensus       114 -~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~-------  181 (379)
T 4h09_A          114 -DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN-------  181 (379)
T ss_dssp             -CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE-------
T ss_pred             -CcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecc-------
Confidence             6888887654 332333344443 4555544433 22 2333445555666555554322211110000000       


Q ss_pred             ECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCC
Q 043567          335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFT  414 (911)
Q Consensus       335 ~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~  414 (911)
                           ....+.........+..+.+.....  .+..                        .....+..|+.+.+..+- .
T Consensus       182 -----~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~------------------------~~f~~~~~l~~i~~~~~~-~  229 (379)
T 4h09_A          182 -----KNKTILESYPAAKTGTEFTIPSTVK--TVTA------------------------YGFSYGKNLKKITITSGV-T  229 (379)
T ss_dssp             -----TTSSEEEECCTTCCCSEEECCTTCC--EECT------------------------TTTTTCSSCSEEECCTTC-C
T ss_pred             -----cccceecccccccccccccccccee--EEee------------------------cccccccccceeeeccce-e
Confidence                 0000000111111222222211110  1111                        122344455555554331 1


Q ss_pred             cCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCcccccccCCC
Q 043567          415 GKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPG  494 (911)
Q Consensus       415 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~  494 (911)
                       .+....+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ ++ .++...|..|.+|+.+.+.++.++.....+
T Consensus       230 -~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a  305 (379)
T 4h09_A          230 -TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRV  305 (379)
T ss_dssp             -EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred             -EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhh
Confidence             333444445777888888765 55455667888889999988654 43 677777888999999999888887777788


Q ss_pred             CCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCC
Q 043567          495 YMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSY  548 (911)
Q Consensus       495 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  548 (911)
                      |.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++..
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            889999999999754 55455667888899998888654 55344556666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=5e-09  Score=114.13  Aligned_cols=157  Identities=13%  Similarity=0.130  Sum_probs=95.1

Q ss_pred             cccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhc--cCCCCcEEEccC--ccccccc----
Q 043567          516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL--NHRRLQLFSVSE--NYLSGFM----  587 (911)
Q Consensus       516 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~ls~--n~l~~~~----  587 (911)
                      ...+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+.  .+++|+.|+|+.  |...+..    
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            344556677888888776311 2333 33 67888888887777654444444  678888888753  2211110    


Q ss_pred             -Cccc---ccccccEEEcccCccccccccccc---CCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccc
Q 043567          588 -TTSF---NISSVEHLYLQKNSLSGPIPIALF---RSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEG  656 (911)
Q Consensus       588 -~~~~---~~~~L~~L~Ls~n~l~~~~p~~l~---~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~  656 (911)
                       ...+   .+++|++|++.+|.+....+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence             0111   367888888888877654444333   356788888888887753    33444566788888888887765


Q ss_pred             cCChhhhc-CCCCCeEEcCCCc
Q 043567          657 QIPNQICQ-LTGLGMMDLSHNK  677 (911)
Q Consensus       657 ~ip~~l~~-l~~L~~L~Ls~N~  677 (911)
                      ..-..+.. +  ...++++.++
T Consensus       322 ~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          322 EMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHHc--CCEEEecCCc
Confidence            44333433 2  3556777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.74  E-value=7.6e-10  Score=114.16  Aligned_cols=82  Identities=27%  Similarity=0.282  Sum_probs=40.9

Q ss_pred             cCCCCCCEEEcCCcccCCc--cChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCC-------
Q 043567          178 NALTSLTTLILRENNIQGS--RTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLP-------  248 (911)
Q Consensus       178 ~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-------  248 (911)
                      .++++|++|+|++|++++.  ++ ..+..+++|++|+|++|+|++.-....+..+ +|++|+|++|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            3455555555555555541  22 2344555666666666665532111112222 56666666666655443       


Q ss_pred             cccCCCCCCcEEE
Q 043567          249 NCLNNMTRLKVLD  261 (911)
Q Consensus       249 ~~l~~l~~L~~L~  261 (911)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1245566666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=6.5e-09  Score=113.23  Aligned_cols=166  Identities=14%  Similarity=0.177  Sum_probs=101.5

Q ss_pred             ccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh--cCCCCCeEEcCCC--cCCCCCCcc
Q 043567          610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC--QLTGLGMMDLSHN--KFNGSIPSC  685 (911)
Q Consensus       610 ~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~--~l~~L~~L~Ls~N--~l~g~ip~~  685 (911)
                      ++..+..+++|+.|+|++|.-. .++. + .+++|++|+|..|.+.......++  .+++|+.|+|+.+  ...|..  .
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~  238 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--D  238 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--C
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--h
Confidence            3445566677888888776311 2333 3 367888888888877654444554  6788888888532  211110  0


Q ss_pred             cccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCcccc
Q 043567          686 FTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMV  765 (911)
Q Consensus       686 ~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  765 (911)
                      +..+.                                                               ..+....++.|+
T Consensus       239 ~~~l~---------------------------------------------------------------~~l~~~~~p~Lr  255 (362)
T 2ra8_A          239 MNVFR---------------------------------------------------------------PLFSKDRFPNLK  255 (362)
T ss_dssp             GGGTG---------------------------------------------------------------GGSCTTTCTTCC
T ss_pred             HHHHH---------------------------------------------------------------HHHhcCCCCCcC
Confidence            00000                                                               000112346788


Q ss_pred             EEEcccCcccccCCcccc---CCCCCCEEECCCCcCCcc----ccccccccCCCCEEeccCCcCcccCCCCCCC-CCCCC
Q 043567          766 GLDLSCNKLTGEIPSEIG---ELQEIPVLNMSHNFLSES----IPESFSNLKMIESLDLSHNRLSGQIPPKLTE-LNFLS  837 (911)
Q Consensus       766 ~LdLs~N~l~g~ip~~i~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~  837 (911)
                      .|+|++|.+.+..+..+.   .++.|++|+|+.|.+++.    ++..+.++++|+.|||++|.++...-..+.. +  ..
T Consensus       256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~  333 (362)
T 2ra8_A          256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PM  333 (362)
T ss_dssp             EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CS
T ss_pred             EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CC
Confidence            899988888765544443   477889999999988774    5555667788999999988887543333332 2  34


Q ss_pred             eEeccCCc
Q 043567          838 NFNVSYNN  845 (911)
Q Consensus       838 ~L~ls~N~  845 (911)
                      .++++.|+
T Consensus       334 ~~~~~~~~  341 (362)
T 2ra8_A          334 KIDVSDSQ  341 (362)
T ss_dssp             EEECCSBC
T ss_pred             EEEecCCc
Confidence            57777776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=9.9e-08  Score=93.65  Aligned_cols=70  Identities=16%  Similarity=0.120  Sum_probs=37.7

Q ss_pred             ccCCCCCCEEeCCCC-CCCcccCcccccccCCCCCCcEEeCCCCCCCcc----chhhhcCCCCCCEEEcCCcccC
Q 043567          125 FHPFEELQSLDLSNN-SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDS----IFLYLNALTSLTTLILRENNIQ  194 (911)
Q Consensus       125 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  194 (911)
                      +...+.|++|+|++| .+.......+...+...++|++|+|++|.+.+.    +...+...+.|++|+|++|.|.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            455666777777776 665443323334455556666666666666532    2233334455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=3.9e-07  Score=93.92  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=40.5

Q ss_pred             cCCCCCCEEECCCCcCCc--cccccccccCCCCEEeccCCcCcccCCCCCCCCC--CCCeEeccCCcCeecCC
Q 043567          783 GELQEIPVLNMSHNFLSE--SIPESFSNLKMIESLDLSHNRLSGQIPPKLTELN--FLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       783 ~~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~L~ls~N~l~g~iP  851 (911)
                      .+++.|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|++|+|++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            445666666666666666  4455556666666666666666654  2233333  66666666666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=5.3e-07  Score=88.36  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=54.0

Q ss_pred             ccccEEEcccCccccc----ccccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEc--cCCccccc----CC
Q 043567          594 SSVEHLYLQKNSLSGP----IPIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLL--RGNNLEGQ----IP  659 (911)
Q Consensus       594 ~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~----ip  659 (911)
                      ++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...+...++|++|+|  ++|.+...    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            4455555555555432    233444556777777777777643    3455666777888888  77777644    33


Q ss_pred             hhhhcCCCCCeEEcCCCcCC
Q 043567          660 NQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       660 ~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      ..+...++|+.|+|++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            44555678888888888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=1.6e-05  Score=75.83  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCC-CCccchhhhcCC----CCCCEEEcCCcc-cCCccChhhhc
Q 043567          130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNY-FDDSIFLYLNAL----TSLTTLILRENN-IQGSRTKQGLS  203 (911)
Q Consensus       130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~l~  203 (911)
                      .|++||+++|.++...-    ..+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. +++..- ..+.
T Consensus        62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred             eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence            56777777776554322    456666777777777664 565555555543    356666666653 442211 2344


Q ss_pred             CCCCCCEEeCCCC
Q 043567          204 KLKNLEALDLSSN  216 (911)
Q Consensus       204 ~l~~L~~L~Ls~n  216 (911)
                      ++++|++|+++++
T Consensus       137 ~~~~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFRNLKYLFLSDL  149 (176)
T ss_dssp             GCTTCCEEEEESC
T ss_pred             cCCCCCEEECCCC
Confidence            5555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.51  E-value=5.6e-05  Score=72.03  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=16.1

Q ss_pred             CCcEEEccCCcCCccCcccccCCCCCCeeeccCC
Q 043567          256 RLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN  289 (911)
Q Consensus       256 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  289 (911)
                      +|+.||++++.++...-..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4444444444444433334444555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.19  E-value=0.00018  Score=69.85  Aligned_cols=91  Identities=11%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             ccCCCCCCEEeCCCC-CCCcccCcccccccCCCCCCcEEeCCCCCCCccc----hhhhcCCCCCCEEEcCCcccCCccC-
Q 043567          125 FHPFEELQSLDLSNN-SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSI----FLYLNALTSLTTLILRENNIQGSRT-  198 (911)
Q Consensus       125 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~-  198 (911)
                      +..-+.|++|+|++| .+.......+..++..-+.|++|+|++|.+.+..    ...+..-+.|++|+|+.|.|.+... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344567777777774 6654433334456666677777777777775432    3334455666666666666642211 


Q ss_pred             --hhhhcCCCCCCEEeCCC
Q 043567          199 --KQGLSKLKNLEALDLSS  215 (911)
Q Consensus       199 --~~~l~~l~~L~~L~Ls~  215 (911)
                        ...+..-+.|++|+|++
T Consensus       117 ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhhCCceeEEECCC
Confidence              12233344455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.64  E-value=0.001  Score=64.53  Aligned_cols=61  Identities=18%  Similarity=0.085  Sum_probs=28.8

Q ss_pred             CCCCCEEeccCCcCCCC----CCcccCCCCCCcEEEccCC---cCCcc----CcccccCCCCCCeeeccCCc
Q 043567          230 LKNLFVLNLEKNNIEDH----LPNCLNNMTRLKVLDISFN---QLSGS----FPSIISNLTSLEYLALFDNN  290 (911)
Q Consensus       230 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n---~l~~~----~p~~l~~l~~L~~L~L~~n~  290 (911)
                      -+.|++|+|++|.|...    +.+++..-+.|+.|+|++|   .+...    +...+..-+.|+.|+++.|.
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            34455555555555432    2223333445666666543   22221    22334445666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0033  Score=56.93  Aligned_cols=56  Identities=20%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             EEEcccCccc-ccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCc
Q 043567          766 GLDLSCNKLT-GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLS  823 (911)
Q Consensus       766 ~LdLs~N~l~-g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~  823 (911)
                      .+|.++++++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4777777775 45665433  35777777777777655666667777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.49  E-value=0.0039  Score=56.47  Aligned_cols=58  Identities=22%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CEEECCCCcCC-ccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          789 PVLNMSHNFLS-ESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       789 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      ..+|-+++.++ ..+|..+.  ++|+.|||++|+|+..-+..|..++.|++|+|++|++.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47999999997 46786554  369999999999997777778999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	911
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-13
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.9 bits (206), Expect = 1e-17
 Identities = 77/410 (18%), Positives = 137/410 (33%), Gaps = 61/410 (14%)

Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
           + E     L K N +  +S   L     +  L         +   G   L  L  +   N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
           N+ +       L   KLV++ M++N ++   P           L  ++      +     
Sbjct: 76  NQLTDITPLKNL--TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIAL-------------- 614
            +R     +   +  +    TS    S  +       L+    +                
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 615 FRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLS 674
            + +NL +L   +N  S + P  I   +NL  L L GN L+      +  LT L  +DL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 675 HNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEER 734
           +N+ +   P                  L  LT +  L + +  I   S L          
Sbjct: 250 NNQISNLAP------------------LSGLTKLTELKLGANQISNISPL---------- 281

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS 794
                  L  +E       ++   SNL  +  L L  N ++   P  +  L ++  L  +
Sbjct: 282 --AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 795 HNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN 844
           +N +S+    S +NL  I  L   HN++S   P  L  L  ++   ++  
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 69/403 (17%), Positives = 137/403 (33%), Gaps = 39/403 (9%)

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS 214
           +L       LG     D++      L  +TTL      I+   +  G+  L NL  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
           +N +      + + +L ++ + N +  +I             L    I+      +  ++
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL 334
                S   ++        T        +   ++  L+    + ++   +   +    + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQ 394
           +L N                + L  ++N +    P       T L+ L L  N       
Sbjct: 195 KLTNL---------------ESLIATNNQISDITPLG---ILTNLDELSLNGNQLKDIGT 236

Query: 395 LPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRF 454
           L    +  L  LD+++N  +   P      L KL  + +  N         I+ +  L  
Sbjct: 237 LASLTN--LTDLDLANNQISNLAPLSG---LTKLTELKLGANQISN-----ISPLAGLTA 286

Query: 455 LDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGK 514
           L   + N +     + +++  +L +L L  NN          +LT+LQ L+  NNK S  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD- 343

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN 557
               L     +  L    N +S   P  + NL+ +  L ++  
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 6e-14
 Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 21/188 (11%)

Query: 125 FHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLT 184
                 L  L L+ N  + +       TL SL  L  L+L  N   +   L  + LT LT
Sbjct: 215 LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLAPL--SGLTKLT 266

Query: 185 TLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIE 244
            L L  N I        +S L  L AL       N   +   I  LKNL  L L  NNI 
Sbjct: 267 ELKLGANQISN------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 245 DHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
           D  P  ++++T+L+ L  + N++S    S ++NLT++ +L+   N      PL++L   +
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANL---T 373

Query: 305 KLEVLLLS 312
           ++  L L+
Sbjct: 374 RITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 2e-12
 Identities = 74/382 (19%), Positives = 127/382 (33%), Gaps = 41/382 (10%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
            +++ +L       + +      D +  L  L  +N   N   D     L  LT L  ++
Sbjct: 43  LDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
           +  N I                  +L++        +Q         + NL +  +  + 
Sbjct: 95  MNNNQIADITPLA-----------NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 143

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
            + ++ ++ L  L         +    ++NLT+LE L +  N       L+ L N     
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES-- 201

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGA 367
              L   NN +   T   + T  L  L L    L  I        +L  LDL++N +   
Sbjct: 202 ---LIATNNQISDITPLGILT-NLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNL 256

Query: 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK 427
            P   L   TKL  L L  N  +    L       L  L     N            L+ 
Sbjct: 257 AP---LSGLTKLTELKLGANQISNISPLA-----GLTALTNLELNENQLEDISPISNLKN 308

Query: 428 LLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
           L Y+ +  N+        ++ + +L+ L  + N  S   S   L +  ++ WL    N  
Sbjct: 309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS---LANLTNINWLSAGHNQI 363

Query: 488 YGRIFPGYMNLTQLQYLYLENN 509
                    NLT++  L L + 
Sbjct: 364 SD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 47/169 (27%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 121 NVSLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNAL 180
           ++        L  LDL+NN    +        L  L +L  L LG N   +   L     
Sbjct: 233 DIGTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISPLA---- 282

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
             LT L   E N         +S LKNL  L L  N I+       +  L  L  L    
Sbjct: 283 -GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFAN 338

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
           N + D   + L N+T +  L    NQ+S   P  ++NLT +  L L D 
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.3 bits (199), Expect = 4e-17
 Identities = 57/262 (21%), Positives = 93/262 (35%), Gaps = 6/262 (2%)

Query: 616 RSSNLLTLDLRDNGFSGV--IPHQINECSNLRFLLLRGN-NLEGQIPNQICQLTGLGMMD 672
           ++  +  LDL          IP  +     L FL + G  NL G IP  I +LT L  + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE 732
           ++H   +           + ++  LD         +     +   +   +        + 
Sbjct: 108 ITHTNVS--GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 733 ERGPFTFDYLVEVEFVTKNR-YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVL 791
                +F  L     +++NR       +  +  +        +     S +    +    
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 792 NMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP 851
                             K +  LDL +NR+ G +P  LT+L FL + NVS+NNL G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 852 DKGQFATFDESSYRGNLHLCGP 873
             G    FD S+Y  N  LCG 
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 4/270 (1%)

Query: 396 PDDKHDFLHHLDISSNNFTGKLPQDMGII-LQKLLYMDMSNNH-FEGNIASSIAEMKELR 453
            D +   +++LD+S  N     P    +  L  L ++ +   +   G I  +IA++ +L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG 513
           +L ++  N SG      L+   +L+ L  S N   G + P   +L  L  +  + N+ SG
Sbjct: 105 YLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 514 KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRL 573
            I +      KL      S                L  + +S+N  EG+  V   + +  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV 633
           Q   +++N L+  +       ++  L L+ N + G +P  L +   L +L++  N   G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 634 IPHQINECSNLRFLLLRGNNLEGQIPNQIC 663
           IP Q              N      P   C
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 63/269 (23%), Positives = 95/269 (35%), Gaps = 4/269 (1%)

Query: 432 DMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELS-AALLTSCFSLLWLGLSDN-NFYG 489
           D  N  + G +  +  +   +  LDLS  N        + L +   L +L +    N  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYL 549
            I P    LTQL YLY+ +   SG I + L + K LV L  S N LSG +P  + +L  L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 550 EVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP 609
             +    N   G IP    +  +L                    +          ++   
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLG 669
               LF S                   ++    NL  L LR N + G +P  + QL  L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 670 MMDLSHNKFNGSIPSC--FTNITLWSVGN 696
            +++S N   G IP         + +  N
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 5e-14
 Identities = 51/265 (19%), Positives = 90/265 (33%), Gaps = 7/265 (2%)

Query: 249 NCLNNMTRLKVLDISFNQLSGSF--PSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
           +      R+  LD+S   L   +  PS ++NL  L +L +   N        ++A  ++L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
             L ++  N    +          + +    N     +PP +    +L  +    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ 426
           A P      +     + ++ N  TG +       +        +                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
           + +++  ++  F+      +   K L  LDL  N   G L    LT    L  L +S NN
Sbjct: 224 QKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNN 279

Query: 487 FYGRIFPGYMNLTQLQYLYLENNKF 511
             G I P   NL +       NNK 
Sbjct: 280 LCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 51/261 (19%), Positives = 85/261 (32%), Gaps = 5/261 (1%)

Query: 354 LKYLDLSHNDLDGAFPTWA-LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNN 412
           +  LDLS  +L   +P  + L N   L  L +   +       P        H    ++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 413 FTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLT 472
                  D    ++ L+ +D S N   G +  SI+ +  L  +    N  SG +  +  +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSS 532
                  + +S N   G+I P + NL         N             S K  +    +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLA 229

Query: 533 NMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFN 592
                     +G    L  L +  N   G +P  L   + L   +VS N L G +    N
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 593 ISSVEHLYLQKNSL--SGPIP 611
           +   +      N      P+P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 58/332 (17%), Positives = 101/332 (30%), Gaps = 80/332 (24%)

Query: 37  CLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCN--WKGVRCNATTG--R 92
           C   ++ AL +IK               L++W+     ++DCCN  W GV C+  T   R
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLP----TTDCCNRTWLGVLCDTDTQTYR 51

Query: 93  VIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHPFEELQSLDLSNNSFEGVYENQAYDT 152
           V  L L+  +               L     +      L  L+                 
Sbjct: 52  VNNLDLSGLN---------------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 153 LGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD 212
           +  L +L  L + +     +I  +L+ + +L TL    N +        +S L NL  + 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVGIT 155

Query: 213 LSSNFINGSLESQGICELKNLFVLNLEKNNI----------------------------- 243
              N I+G++        K    + + +N +                             
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 244 -----------------EDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
                                   +     L  LD+  N++ G+ P  ++ L  L  L +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNML 318
             NN  G  P     N  + +V   +  N  L
Sbjct: 276 SFNNLCGEIP--QGGNLQRFDVSAYA-NNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 228 CELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALF 287
              KNL  L+L  N I   LP  L  +  L  L++SFN L G  P    NL   +  A  
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 288 DNNFEGTFPLSS 299
           +N      PL +
Sbjct: 300 NNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 6e-15
 Identities = 48/264 (18%), Positives = 83/264 (31%), Gaps = 15/264 (5%)

Query: 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
            +   LDL +N I   ++      LKNL  L L  N I    P     + +L+ L +S N
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENF 325
           QL      +   L  L      +N             +  + V L +       ++   F
Sbjct: 90  QLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 326 LPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLT 385
               +L  +R+ + ++  IP  L     L  L L  N +        L+    L  L L+
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAAS-LKGLNNLAKLGLS 203

Query: 386 NNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG----- 440
            NS +            L  L +++N              + +  + + NN+        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSND 261

Query: 441 -NIASSIAEMKELRFLDLSKNNFS 463
                   +      + L  N   
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 19/264 (7%)

Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
            +  +L+L+ N I +       N+  L  L +  N++S   P   + L  LE L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNC---SLNVIPPF 347
            +            K    L    N + +V+   F    Q+ V+ L      S  +    
Sbjct: 91  LKELPE-----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 348 LLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLD 407
                 L Y+ ++  ++    P     +   L  L L  N  T          + L  L 
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 408 ISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSG--- 464
           +S N+ +             L  + ++NN         +A+ K ++ + L  NN S    
Sbjct: 202 LSFNSISAV-DNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGS 259

Query: 465 --ELSAALLTSCFSLLWLGLSDNN 486
                    T   S   + L  N 
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 52/268 (19%), Positives = 88/268 (32%), Gaps = 12/268 (4%)

Query: 394 QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR 453
           ++P D       LD+ +N  T     D    L+ L  + + NN        + A + +L 
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG 513
            L LSKN    EL   +  +   L             +F   +N   +  L     K SG
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSG 140

Query: 514 KIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRL 573
                    KKL  +R++   ++  IP   G    L  L +  N         L     L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 574 QLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGV 633
               +S N +S     S   +         N+    +P  L     +  + L +N  S +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 634 ------IPHQINECSNLRFLLLRGNNLE 655
                  P    + ++   + L  N ++
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 3/206 (1%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF 558
                L L+NNK +   +      K L  L + +N +S   P     L  LE L +SKN 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSS 618
            +          + L++       +   +    N   V  L       SG    A     
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF 678
            L  + + D   + +         +L  L L GN +       +  L  L  + LS N  
Sbjct: 151 KLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 679 NGSIPSCFTNITLWSVGNLDRYRLEH 704
           +        N       +L+  +L  
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 48/263 (18%), Positives = 76/263 (28%), Gaps = 14/263 (5%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
              LDL NN    + +        +LK L  L L  N            L  L  L L +
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFING-SLESQGICELKNLFVLNLEKNNIEDHLPN 249
           N ++    K      K L+ L +  N I               +  L             
Sbjct: 89  NQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 250 CLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVL 309
               M +L  + I+   ++     +     SL  L L  N        +SL   + L  L
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA-ASLKGLNNLAKL 200

Query: 310 LLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFP 369
            LS  +               L+ L L N  L  +P  L     ++ + L +N++     
Sbjct: 201 GLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 370 TWALQNNTKLEVLLLTNNSFTGN 392
                     +    +  S   N
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 9e-14
 Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 5/236 (2%)

Query: 617 SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
             +   LDL++N  + +         NL  L+L  N +    P     L  L  + LS N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP 736
           +           +    V   +  ++    F    +  +  I      +  + S  E G 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVF----NGLNQMIVVELGTNPLKSSGIENGA 145

Query: 737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHN 796
           F     +    +               +  L L  NK+T    + +  L  +  L +S N
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 797 FLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD 852
            +S     S +N   +  L L++N+L  ++P  L +  ++    +  NN+S +  +
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 42/230 (18%), Positives = 72/230 (31%), Gaps = 4/230 (1%)

Query: 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML 535
               L L +N         + NL  L  L L NNK S           KL  L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISS 595
                     L  L V          ++   L     ++L +               +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 596 VEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLE 655
           + ++ +   +++  IP  L    +L  L L  N  + V    +   +NL  L L  N++ 
Sbjct: 152 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 656 GQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHL 705
                 +     L  + L++NK          +  +  V  L    +  +
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV-YLHNNNISAI 257

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 26/261 (9%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
                L LQ N ++           NL TL L +N  S + P        L  L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTF------ 707
           L+         L  L + +    K   S+ +    + +  +G                  
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 708 ---VERLDVNSIGIYYSSM------LDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNG 758
                R+   +I      +      L +      +    +   L  +  +  +   +   
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 759 SNLDYMVGLDL----SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESF------SN 808
            N        L      N    ++P  + + + I V+ + +N +S      F      + 
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 809 LKMIESLDLSHNRLS-GQIPP 828
                 + L  N +   +I P
Sbjct: 271 KASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 3/115 (2%)

Query: 766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQ 825
            +  S   L  ++P ++    +  +L++ +N ++E     F NLK + +L L +N++S  
Sbjct: 14  VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 826 IPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCN 880
            P     L  L    +S N L  L     +              +     N    
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (171), Expect = 3e-13
 Identities = 53/472 (11%), Positives = 118/472 (25%), Gaps = 38/472 (8%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED----HLPNCLNNMTRLKVLDI 262
           ++++LD+    ++ +  ++ +  L+   V+ L+   + +     + + L     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 263 SFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQT 322
             N+L       +                             K++ L L           
Sbjct: 63  RSNELGDVGVHCVLQGLQ--------------------TPSCKIQKLSLQNCCLTGAGCG 102

Query: 323 ENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVL 382
                   L  L+  + S N++         L+ L     D         L+  +     
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLL-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 157

Query: 383 LLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNI 442
                S         +     + ++ +      +  +D    L+ L              
Sbjct: 158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 217

Query: 443 ASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQ 502
              I   K         +N  G++  A L          L     +             +
Sbjct: 218 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 277

Query: 503 YLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGN 562
            L  + +     +    L  +    L  +       +               S       
Sbjct: 278 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 337

Query: 563 IPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSG----PIPIALFRSS 618
               LL  +                      S +  L+L    +S      +   L  + 
Sbjct: 338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 397

Query: 619 NLLTLDLRDNGFSGVIPHQI-----NECSNLRFLLLRGNNLEGQIPNQICQL 665
           +L  LDL +N        Q+          L  L+L       ++ +++  L
Sbjct: 398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (160), Expect = 7e-12
 Identities = 45/448 (10%), Positives = 115/448 (25%), Gaps = 19/448 (4%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM----KELRFLDLS 458
           +  LDI     +     ++  +LQ+   + + +          I+        L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 459 KNNFSGE----LSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGK 514
            N         +   L T    +  L L +    G       +  +      E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 515 IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQ 574
           + +  L+      L     +    + +   + +  E L            + + N+   +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 575 LFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVI 634
                                +E   +  ++      I   ++S        +      +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 635 PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSV 694
                   +    L      E  I  + C      +      K      +   +     +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 695 GNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYE 754
                     L  +     +      S    +   +         +  +E   V +    
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 755 VYNGSNLDYMVGLDLSCNKLTGE----IPSEIGELQEIPVLNMSHNFLSESIPESFS--- 807
           +    +   +  L L+   ++      + + +     +  L++S+N L ++         
Sbjct: 364 LGQPGS--VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 808 --NLKMIESLDLSHNRLSGQIPPKLTEL 833
                ++E L L     S ++  +L  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 50/412 (12%), Positives = 101/412 (24%), Gaps = 17/412 (4%)

Query: 451 ELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF----YGRIFPGYMNLTQLQYLYL 506
           +++ LD+     S    A LL        + L D          I         L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 507 ENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQ 566
            +N+        +L+  +    ++    L        G       L       E ++   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 567 LLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLR 626
           LL    LQL           +               +   S       F+   +   D+ 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 627 DNGFSGVIPHQINECSNLRFLLLRGNN------LEGQIPNQICQLTGLGMMDLSHNKFNG 680
           + G   +     +    L  L L           +               +  +     G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 681 SIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFD 740
               C   +   S           +T     D+  +     S+ ++    +E        
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 741 YLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSE 800
               +         ++  S            + L         ++    + +     L +
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 801 SIPESFSNLKMIESLDLSHNRLSGQ----IPPKLTELNFLSNFNVSYNNLSG 848
            + +  S L+    L L+   +S      +   L   + L   ++S N L  
Sbjct: 363 GLGQPGSVLR---VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 4e-07
 Identities = 58/455 (12%), Positives = 119/455 (26%), Gaps = 28/455 (6%)

Query: 130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDD----SIFLYLNALTSLTT 185
           ++QSLD+         + +  + L  L++ +++ L      +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 186 LILRENNIQGSRTKQGLSKLK----NLEALDLSSNFINGSLESQGICELKNLFVLNLEKN 241
           L LR N +        L  L+     ++ L L +  + G+        L+ L  L     
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE--L 117

Query: 242 NIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLA 301
           ++ D+L          + L     +L        S   +           +  F   +++
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 302 NHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSH 361
           N+   E  +      +     +      +   +   NC                 L  + 
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 362 NDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDM 421
               G         +    +  L         +   D    L   +              
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 422 GIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLG 481
                    +       E     S +          S    +             +    
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR------FLLELQISNNR 351

Query: 482 LSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSG 537
           L D              + L+ L+L +   S      +   LL +  L EL +S+N L  
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 538 HIPHWMG-----NLSYLEVLLMSKNFFEGNIPVQL 567
                +          LE L++   ++   +  +L
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 52/431 (12%), Positives = 103/431 (23%), Gaps = 29/431 (6%)

Query: 123 SLFHPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL----- 177
            L    ++ Q + L +              L     L  LNL  N   D     +     
Sbjct: 21  ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80

Query: 178 NALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLN 237
                +  L L+   + G+      S L+ L  L       N   ++      + L    
Sbjct: 81  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 140

Query: 238 LEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPL 297
                ++    +            +             +++       L     +    L
Sbjct: 141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 200

Query: 298 SSLANHSKLE-------------VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVI 344
            +L   S                         +   +  +         L  P+  L  +
Sbjct: 201 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 260

Query: 345 PPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLH 404
             +          DL                  +L          T        +  ++ 
Sbjct: 261 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320

Query: 405 HLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKE---LRFLDLSKNN 461
               ++   +              L +  +     G         +    LR L L+  +
Sbjct: 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380

Query: 462 FSGELSAAL---LTSCFSLLWLGLSDNNFYGRIFPG-----YMNLTQLQYLYLENNKFSG 513
            S    ++L   L +  SL  L LS+N                    L+ L L +  +S 
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

Query: 514 KIEEGLLKSKK 524
           ++E+ L   +K
Sbjct: 441 EMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 61/459 (13%), Positives = 119/459 (25%), Gaps = 32/459 (6%)

Query: 257 LKVLDISFNQLSGS-FPSIISNLTSLEYLALFDNNF--EGTFPLSS-LANHSKLEVLLLS 312
           ++ LDI   +LS + +  ++  L   + + L D          +SS L  +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 313 TRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWA 372
             +N L     + +     + L+ P+C +             + L L +  L GA     
Sbjct: 64  --SNELGDVGVHCVL----QGLQTPSCKI-------------QKLSLQNCCLTGAGCGVL 104

Query: 373 LQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMD 432
                 L  L   + S                                +     + L   
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 433 MSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIF 492
           +        +  S  ++ E     L +           L      +      +       
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 224

Query: 493 PGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVL 552
              +    L    L +   +      L  S +L  L +             G      VL
Sbjct: 225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-----ITAKGCGDLCRVL 279

Query: 553 LMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPI 612
              ++  E ++    L     +L   +       + + +  S         +  S     
Sbjct: 280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 339

Query: 613 ALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ----IPNQICQLTGL 668
                  +    L D G   +        S LR L L   ++       +   +     L
Sbjct: 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399

Query: 669 GMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTF 707
             +DLS+N    +               L++  L  + +
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 39/441 (8%), Positives = 106/441 (24%), Gaps = 18/441 (4%)

Query: 159 LKILNLGYNYFDDSIFLYL-NALTSLTTLILRENNIQGSRTK---QGLSKLKNLEALDLS 214
           ++ L++      D+ +  L   L     + L +  +  +R K     L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNN-MTRLKVLDISFNQLSGSFPS 273
           SN + G +    + +        ++K ++++         +    +  +   Q      +
Sbjct: 64  SNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 274 IISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKV 333
           ++ +           +       L                     +   +    +     
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 334 LRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNL 393
                     +         LK         +       + +   L  L L +N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 394 QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELR 453
                         + +           G      +     +        + + +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 454 FLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSG 513
             +          S  + +  F+        +      F   + ++  +       +   
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 514 KIEEGLLKSKKLVELRMSSNMLSG----HIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL- 568
            + +       L  L ++   +S      +   +     L  L +S N       +QL+ 
Sbjct: 363 GLGQP---GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 569 ----NHRRLQLFSVSENYLSG 585
                   L+   + + Y S 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 68  WVDDGGMSSDCCNWKGVRCNATTGRVIQLLLNDTSKFIEYSKNYTYGDMVLSLNVSLFHP 127
                 + S             +     L  N     ++ S N      V  L   L  P
Sbjct: 308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 367

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYL-----NALTS 182
              L+ L L++        +    TL +   L+ L+L  N   D+  L L          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 183 LTTLILRENNIQGSRTKQGLSKLKNLEALDLSS 215
           L  L+L +         +  +  K+  +L + S
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 354 LKYLDLSHNDLDGAFPTW---ALQNNTKLEVLLLTNNSFTGN-----LQLPDDKHDFLHH 405
           L+ L L+  D+  +  +     L  N  L  L L+NN          ++        L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 406 LDISSNNFTGKLPQDMGIILQK 427
           L +    ++ ++   +  + + 
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKD 452

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 52/261 (19%), Positives = 81/261 (31%), Gaps = 11/261 (4%)

Query: 131 LQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE 190
            Q + L  N    V       +  + + L IL L  N            L  L  L L +
Sbjct: 34  SQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
           N    S        L  L  L L        L       L  L  L L+ N ++    + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLL 310
             ++  L  L +  N++S         L SL+ L L  N      P +       + +  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL-- 206

Query: 311 LSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPT 370
               NN+  + TE   P   L+ LRL +               L+    S +++  + P 
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 371 WALQNNTKLEVLLLTNNSFTG 391
             L      ++  L  N   G
Sbjct: 267 R-LAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 52/260 (20%), Positives = 89/260 (34%), Gaps = 9/260 (3%)

Query: 231 KNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNN 290
                + L  N I             L +L +  N L+    +  + L  LE L L DN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 291 FEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLH 350
              +   ++     +L  L L  R  + ++    F     L+ L L + +L  +P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 351 QFD-LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS 409
               L +L L  N +    P  A +    L+ LLL  N               L  L + 
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 410 SNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAA 469
           +NN +  LP +    L+ L Y+ +++N +  +   +      L+    S +     L   
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 470 LLTSCFSLLWLGLSDNNFYG 489
           L           L+ N+  G
Sbjct: 268 LA----GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 43/302 (14%), Positives = 79/302 (26%), Gaps = 54/302 (17%)

Query: 525 LVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLS 584
              + +  N +S            L +L +  N               L+   +S+N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 585 GFMTTSF--NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642
             +  +    +  +  L+L +  L    P      + L  L L+DN    +      +  
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRL 702
           NL  L L GN +          L  L  + L  N+     P  F ++       L    L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 703 EHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762
             L                                                     + L 
Sbjct: 214 SALPT------------------------------------------------EALAPLR 225

Query: 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
            +  L L+ N    +  +       +     S + +  S+P+  +   +     L+ N L
Sbjct: 226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDL 281

Query: 823 SG 824
            G
Sbjct: 282 QG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 47/261 (18%), Positives = 83/261 (31%), Gaps = 11/261 (4%)

Query: 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
              + + L  N I+  + +      +NL +L L  N +          +  L+ LD+S N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 266 QLSGS-FPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTEN 324
               S  P+    L  L  L L D               + L+ L L   N +  +  + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYL-QDNALQALPDDT 148

Query: 325 FLPTFQLKVLRLPNCSLNVIPPFLLHQF-DLKYLDLSHNDLDGAFPTWALQNNTKLEVLL 383
           F     L  L L    ++ +P         L  L L  N +    P    ++  +L  L 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLY 207

Query: 384 LTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIA 443
           L  N+ +            L +L ++ N +          +   L     S++       
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC--DCRARPLWAWLQKFRGSSSEVPC--- 262

Query: 444 SSIAEMKELRFLDLSKNNFSG 464
           S    +       L+ N+  G
Sbjct: 263 SLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 2/202 (0%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF 558
              Q ++L  N+ S          + L  L + SN+L+         L+ LE L +S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 559 FEGNI-PVQLLNHRRLQLFSVSENYLSGFMT-TSFNISSVEHLYLQKNSLSGPIPIALFR 616
              ++ P       RL    +    L          ++++++LYLQ N+L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 617 SSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHN 676
             NL  L L  N  S V         +L  LLL  N +    P+    L  L  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 677 KFNGSIPSCFTNITLWSVGNLD 698
             +         +       L+
Sbjct: 212 NLSALPTEALAPLRALQYLRLN 233

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 2/210 (0%)

Query: 476 SLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML 535
           +   + L  N         +     L  L+L +N  +            L +L +S N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 536 SGHI-PHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSF-NI 593
              + P     L  L  L + +   +   P        LQ   + +N L      +F ++
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
            ++ HL+L  N +S     A     +L  L L  N  + V PH   +   L  L L  NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 654 LEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
           L       +  L  L  + L+ N +     
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 50/314 (15%), Positives = 84/314 (26%), Gaps = 34/314 (10%)

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLE 307
             C+               L  + P  I    + + + L  N      P +S      L 
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLT 59

Query: 308 VLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGA 367
           +L L +                  ++    N  L  + P                     
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP--------------------- 98

Query: 368 FPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQK 427
                     +L  L L                  L +L +  N     LP D    L  
Sbjct: 99  ---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGN 154

Query: 428 LLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
           L ++ +  N        +   +  L  L L +N  +  +          L+ L L  NN 
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNL 213

Query: 488 YGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLS 547
                     L  LQYL L +N +        L +  L + R SS+ +   +P  +    
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSEVPCSLPQRLAGRD 272

Query: 548 YLEVLLMSKNFFEG 561
              +   + N  +G
Sbjct: 273 LKRL---AANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 50/248 (20%), Positives = 84/248 (33%), Gaps = 10/248 (4%)

Query: 610 IPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLG 669
           +P+ +   +    + L  N  S V       C NL  L L  N L          L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 670 MMDLSHNKFNGSI-PSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQ 728
            +DLS N    S+ P+ F  +      +LDR  L+ L       + ++       L    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL---YLQDNA 140

Query: 729 LSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL---DLSCNKLTGEIPSEIGEL 785
           L +     F     +   F+  NR           +  L    L  N++    P    +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 786 QEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNN 845
             +  L +  N LS    E+ + L+ ++ L L+ N              +L  F  S + 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSE 259

Query: 846 LSGLIPDK 853
           +   +P +
Sbjct: 260 VPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 5/256 (1%)

Query: 594 SSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNN 653
           ++ + ++L  N +S     +     NL  L L  N  + +        + L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 654 LEGQI-PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLD 712
               + P     L  L  + L         P  F  +       L    L+ L      D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 713 VNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCN 772
           + ++   +     +  +             + +          +   +L  ++ L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 773 KLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE 832
            L+      +  L+ +  L ++ N        +      ++    S + +   +P +L  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 833 LNFLSNFNVSYNNLSG 848
            +      ++ N+L G
Sbjct: 271 RDLK---RLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 162 LNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGS 221
           L+L        +      L S   +  R       +          ++ +DLS++ I  S
Sbjct: 5   LDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 222 LESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDIS--FNQLSGSFPSIISNLT 279
                + +   L  L+LE   + D + N L   + L  L++S        +  +++S+ +
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 280 SLEYLALFDNNFEG----TFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLR 335
            L+ L L              ++ ++       L    +N      +        L  L 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 336 LPNCSL--NVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNL 393
           L +  +  N           L++L LS            L     L+ L +      G L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 394 QLPDDKHDFLHHLDISSNNFTG 415
           QL  +    L HL I+ ++FT 
Sbjct: 242 QLLKEA---LPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 40/279 (14%), Positives = 86/279 (30%), Gaps = 21/279 (7%)

Query: 554 MSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIA 613
           ++      ++  +LL+ + +  F    +++   +   F+   V+H+ L  + +       
Sbjct: 7   LTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 614 LFRS-SNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD 672
           +    S L  L L     S  I + + + SNL  L L G +   +   Q    +   + +
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSE 732
           L+ +                    + +  L       +    S  +     L    LS  
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185

Query: 733 ERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLS-CNKLTGEIPSEIGELQEIPVL 791
                                       L+Y+  L LS C  +  E   E+GE+  +  L
Sbjct: 186 VMLKNDCFQEF---------------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 230

Query: 792 NMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKL 830
            +       ++      L     L ++ +  +    P +
Sbjct: 231 QVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 8/245 (3%)

Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQ 374
              L       L +  +   R P   ++         F ++++DLS++ ++ +     L 
Sbjct: 9   GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 68

Query: 375 NNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSN-NFTGKLPQDMGIILQKLLYMDM 433
             +KL+ L L     +  +     K+  L  L++S    F+    Q +     +L  +++
Sbjct: 69  QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128

Query: 434 ------SNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNF 487
                 +  H +  +A     + +L      KN    +LS  +      +          
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188

Query: 488 YGRIFPGYMNLTQLQYLYLEN-NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNL 546
               F  +  L  LQ+L L        +    L +   L  L++   +  G +      L
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 248

Query: 547 SYLEV 551
            +L++
Sbjct: 249 PHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 35/241 (14%), Positives = 82/241 (34%), Gaps = 15/241 (6%)

Query: 455 LDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGK 514
           LDL+  N   +++  LL+    ++       +F  +    + +  ++Q++ L N+     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ--GVIAFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 515 IEEGLLKS-KKLVELRMSSNMLSGHIPHWMGNLSYLEVL--LMSKNFFEGNIPVQLLNHR 571
              G+L    KL  L +    LS  I + +   S L  L       F E  +   L +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 572 RLQLFSVSENYLSGFMTTSFNISSVEH--------LYLQKNSLSGPIPIALFRSSNLLTL 623
           RL   ++S  +          ++ V           Y +    S    +     + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 624 DLRDNGFSGVIPHQINECSNLRFLLLRG-NNLEGQIPNQICQLTGLGMMDLSHNKFNGSI 682
                        +  + + L+ L L    ++  +   ++ ++  L  + +     +G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 683 P 683
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG-Q 825
           LDL+   L  ++   +     +       +F+ + + E FS  + ++ +DLS++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 826 IPPKLTELNFLSNFNVSYNNLSGLIP 851
           +   L++ + L N ++    LS  I 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIV 88

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 37/204 (18%), Positives = 61/204 (29%), Gaps = 8/204 (3%)

Query: 403 LHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
              ++    N T  LP D+      L    +S N       +++     L  L+L +   
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 463 SGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKS 522
           +       L    +L       +N    +      L  L  L +  N+ +      L   
Sbjct: 68  TKLQVDGTLPVLGTLDL----SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582
            +L EL +  N L    P  +     LE L ++ N         L     L    + EN 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 583 LSGFMTTSFNISSVEHLYLQKNSL 606
           L       F    +   +L  N  
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 41/196 (20%), Positives = 56/196 (28%), Gaps = 9/196 (4%)

Query: 338 NCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD 397
             +L  +PP L    D   L LS N L   F    L   T+L  L L     T       
Sbjct: 19  KRNLTALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT-----KL 70

Query: 398 DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDL 457
                L  L     +        +       L +   + +   ++               
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 458 SKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEE 517
            K N    L   LLT    L  L L++NN           L  L  L L+ N     I +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 518 GLLKSKKLVELRMSSN 533
           G   S  L    +  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 3/181 (1%)

Query: 499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNF 558
                L+L  N         L+   +L +L +             G L  L  L +S N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKLQVDGTLPVLGTLDLSHNQ 88

Query: 559 FEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSS 618
            +    +         L        S  +     +  ++ LYL+ N L    P  L  + 
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF 678
            L  L L +N  + +    +N   NL  LLL+ N+L   IP        L    L  N +
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 679 N 679
            
Sbjct: 208 L 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 7/210 (3%)

Query: 637 QINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGN 696
           ++++ ++   +     NL   +P  +       ++ LS N       +     T  +  N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 697 LDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVY 756
           LDR  L  L     L V        + L    L  +     T   +      +     + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 757 NGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLD 816
               L  +    L  N+L    P  +    ++  L++++N L+E      + L+ +++L 
Sbjct: 122 GLGELQEL---YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 817 LSHNRLSGQIPPKLTELNFLSNFNVSYNNL 846
           L  N L   IP      + L    +  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 7/210 (3%)

Query: 445 SIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYL 504
            ++++     ++  K N +  L   L         L LS+N  Y       M  T+L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIP 564
            L+  + +    +G L    L  L +S N L           +   + +         + 
Sbjct: 61  NLDRAELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 565 VQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLD 624
                    +L+       +           +E L L  N+L+      L    NL TL 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 625 LRDNGFSGVIPHQINECSNLRFLLLRGNNL 654
           L++N     IP        L F  L GN  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 31/231 (13%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
            ++S   +   K +L+  +P  L +  +   L L +N         +   + L  L L  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERL 711
           +  E         L  LG +DLSHN+         T     +V ++   RL  L      
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA-LTVLDVSFNRLTSLPLGALR 121

Query: 712 DVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSC 771
            +  +   Y    ++  L      P      + +                        + 
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL------------------------AN 157

Query: 772 NKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
           N LT      +  L+ +  L +  N L  +IP+ F    ++    L  N  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 13/177 (7%)

Query: 128 FEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLI 187
            ++   L LS N            TL    RL  LNL                 +L  L 
Sbjct: 30  PKDTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLG 80

Query: 188 LRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHL 247
             + +    ++   L +      +   S     SL    +  L  L  L L+ N ++   
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 248 PNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNF----EGTFPLSSL 300
           P  L    +L+ L ++ N L+     +++ L +L+ L L +N+     +G F    L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 41/236 (17%), Positives = 65/236 (27%), Gaps = 34/236 (14%)

Query: 227 ICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL 286
           + ++ +   +N +K N+   LP  L       +L +S N L     + +   T L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 287 FDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPP 346
                                       +  L V     L   QL+ L L   +L  +  
Sbjct: 63  DRAELTKLQV------------------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104

Query: 347 FLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHL 406
             +    L  L L      G      L+ N                L             
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLTPTPKLEK 152

Query: 407 DISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNF 462
              +NN   +LP  +   L+ L  + +  N     I         L F  L  N +
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 44/206 (21%), Positives = 64/206 (31%), Gaps = 12/206 (5%)

Query: 181 TSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEK 240
              T L L EN +        L     L  L+L    +    + Q    L  L  L+L  
Sbjct: 31  KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSH 86

Query: 241 NNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSL 300
           N ++              + D+SFN+L+      +  L  L+ L L  N  +   P   L
Sbjct: 87  NQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--GL 143

Query: 301 ANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLS 360
              +     L    NN+ ++          L  L L   SL  IP        L +  L 
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 361 HNDLD-----GAFPTWALQNNTKLEV 381
            N          F  W   N   + V
Sbjct: 204 GNPWLCNCEILYFRRWLQDNAENVYV 229

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 36/265 (13%), Positives = 70/265 (26%), Gaps = 60/265 (22%)

Query: 248 PNC-LNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKL 306
           P C ++ +     ++     L+ + P  +        L L +N     F L++L  +++L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRL 57

Query: 307 EVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDG 366
             L L                                          L  L       + 
Sbjct: 58  TQLNLDRAELTKLQ-----------------------------VDGTLPVLGTLDLSHNQ 88

Query: 367 AFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQ 426
                 L        +L  + +   +L L   +            N    LP  +     
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 427 KLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNN 486
           KL  + ++NN+     A  +  ++ L  L L +N+                         
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY----------------------- 185

Query: 487 FYGRIFPGYMNLTQLQYLYLENNKF 511
               I  G+     L + +L  N +
Sbjct: 186 ---TIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 52/335 (15%), Positives = 94/335 (28%), Gaps = 29/335 (8%)

Query: 228 CELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALF 287
           C  +    L L    +   LP    +   L+ L  S N L+   P +  +L SL      
Sbjct: 35  CLDRQAHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 288 DNNFEGTFPLSSLANHS-----------KLEVLLLSTRNNMLQVQTENFLPTFQLKVLRL 336
                   PL      S               L +   +N    +  +  P+ +      
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 337 PNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLP 396
                      L     +   + S   L     +          +  L        L   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 397 DDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLD 456
              ++ L  L     +      +D  +     L   ++      NI S ++E+    +  
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY-- 267

Query: 457 LSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIE 516
               N S     +L     SL  L +S+N       P      +L+ L    N  + ++ 
Sbjct: 268 --YLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPA--LPPRLERLIASFNHLA-EVP 320

Query: 517 EGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEV 551
           E     + L +L +  N L    P    ++  L +
Sbjct: 321 ELP---QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSG-- 824
           L++S NKL  E+P+    L+    L  S N L+  +PE   NLK    L + +N L    
Sbjct: 289 LNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLREFP 340

Query: 825 QIPPKLTELNF 835
            IP  + +L  
Sbjct: 341 DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 63/327 (19%), Positives = 110/327 (33%), Gaps = 25/327 (7%)

Query: 523 KKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENY 582
           ++  EL +++  LS  +P    +L   E L+ S N     +P    +   L+   V  N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQS---LKSLLVDNNN 89

Query: 583 LSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642
           L               L     S +    +   ++S+ L +   DN     +    +   
Sbjct: 90  LKALSD------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS---LKKLPDLPP 140

Query: 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRL 702
           +L F+    N LE     Q          D +  K    +P    +I   +    +   L
Sbjct: 141 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 200

Query: 703 EHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLD 762
           ++L F+  +  ++  +     L     +   R  +  D     + +T         S L 
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 763 YMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRL 822
            +       N  + EI S       +  LN+S+N L   +P     L   E L  S N L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL 316

Query: 823 SGQIPPKLTELNFLSNFNVSYNNLSGL 849
           + ++P     L  L   +V YN L   
Sbjct: 317 A-EVPELPQNLKQL---HVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNC 250
            N   +  +       +LE L++S+N +   L +        L  L    N++   +P  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL 322

Query: 251 LNNMTRLKVLDISFNQLSGSFPSIISNLTSL 281
             N   LK L + +N L   FP I  ++  L
Sbjct: 323 PQN---LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 53/335 (15%), Positives = 98/335 (29%), Gaps = 27/335 (8%)

Query: 206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFN 265
           +    L+L++  ++ SL         +L  L    N++   LP    ++  L V + +  
Sbjct: 38  RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 266 QLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQ-VQTEN 324
            LS   P +     S   L         +F      +++ L+ L     +          
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 325 FLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLL 384
                +L+ L                      L+      +       LQN   L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 385 TNNSFTGNLQLPDDKHDFLHHL-------DISSNNFTGKLPQDMGIILQKLLYMDMSNNH 437
            NN       LP                 ++  +     + +++   L +L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 438 FEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMN 497
               I S       L  L++S N         L      L  L  S N+      P    
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL--AEVPE--L 322

Query: 498 LTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSS 532
              L+ L++E N    +  +     + + +LRM+S
Sbjct: 323 PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 48/339 (14%), Positives = 85/339 (25%), Gaps = 28/339 (8%)

Query: 330 QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF 389
           Q   L L N  L+ +P    H   L+ L  S N L            T+L  L  +  S 
Sbjct: 39  QAHELELNNLGLSSLPELPPH---LESLVASCNSL------------TELPELPQSLKSL 83

Query: 390 TGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEM 449
                + ++    L  L            Q   +   +        +    ++       
Sbjct: 84  ----LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 450 KELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENN 509
             L F+    N          L    ++     S              +     L     
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 510 KFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLN 569
             +      +     L++           +      L+ L  L  S  F + +  +    
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNG 629
                         +   +      S+E L +  N L   +P        L  L    N 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNH 315

Query: 630 FSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL 668
            + V         NL+ L +  N L  + P+    +  L
Sbjct: 316 LAEV----PELPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 55/342 (16%), Positives = 106/342 (30%), Gaps = 27/342 (7%)

Query: 376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN 435
           + +   L L N   +    LP+     L  L  S N+ T +LP+    + Q L  + + N
Sbjct: 37  DRQAHELELNNLGLS---SLPELPPH-LESLVASCNSLT-ELPE----LPQSLKSLLVDN 87

Query: 436 NHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGY 495
           N+    + +       L +L +S N                        +     +    
Sbjct: 88  NN----LKALSDLPPLLEYLGVSNNQLEK-------LPELQNSSFLKIIDVDNNSLKKLP 136

Query: 496 MNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMS 555
                L+++   NN+     E   L     +    +S      +P  + ++     +L  
Sbjct: 137 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196

Query: 556 KNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF 615
               +    +  +      L ++ +   S       +    +   L ++     +   +F
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 256

Query: 616 RSSN-LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLS 674
              + L       N  S  I    +   +L  L +  N L  ++P    +L  L     S
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IAS 312

Query: 675 HNKFNGSIPSCFTNIT-LWSVGNLDRYRLEHLTFVERLDVNS 715
            N     +P    N+  L    N  R   +    VE L +NS
Sbjct: 313 FNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.5 bits (116), Expect = 9e-07
 Identities = 42/317 (13%), Positives = 90/317 (28%), Gaps = 15/317 (4%)

Query: 157 KRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTK---QGLSKLKNLEALDL 213
           K LK+  +       S+F  L    S+  ++L  N I     +   + ++  K+LE  + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 214 SSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPS 273
           S  F    ++ +    L+ L    L+   +     +        +   I F         
Sbjct: 67  SDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 274 IISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKV 333
           +  +   L   A             +    +   +  +    N L+  +           
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 334 LRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNL 393
             L    +            L    L++                       ++       
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-----SSALAIALK 240

Query: 394 QLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAE----- 448
             P+ +   L+   +S+      +     +    L  + +  N  E +   ++       
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 449 MKELRFLDLSKNNFSGE 465
           M +L FL+L+ N FS E
Sbjct: 301 MPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 45/333 (13%), Positives = 92/333 (27%), Gaps = 29/333 (8%)

Query: 229 ELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG----SFPSIISNLTSLEYL 284
           E K+L +  +   + +  +   L     +K + +S N +           I++   LE  
Sbjct: 6   EGKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 285 ALFDNNF-----EGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNC 339
              D        E    L  L         L + R +          P         P  
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 340 SL-----NVIPPFLLHQFDLKYLDLSHNDLDGAFPTWAL---QNNTKLEVLLLTNNSFTG 391
            L      + P               +     A P  ++   +N  +   +     +F  
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 392 NLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKE 451
           +  L   K            +   +       +    L  +   +     +A ++     
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 452 LRFLDLSKNNFSGELSAALLT-----SCFSLLWLGLSDNNFYGRIFPG-----YMNLTQL 501
           LR L L+    S   +AA++          L  L L  N                 +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 502 QYLYLENNKFSGKIEEGLLKSKKLVELRMSSNM 534
            +L L  N+F  + ++ + + +++   R    +
Sbjct: 305 LFLELNGNRF-SEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 31/332 (9%), Positives = 77/332 (23%), Gaps = 31/332 (9%)

Query: 568 LNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGP----IPIALFRSSNLLTL 623
           +  + L+L +++               SV+ + L  N++       +   +    +L   
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 624 DLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIP 683
           +  D     V          L   LL+   L     +            +     +  + 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 684 SCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLV 743
             + +          +               +     S +    +L +     +   +  
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 744 EVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT----------------GEIPSEIGELQE 787
                T    +          + L+                         +   +     
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 788 IPVLNMSHNFLSESIPE------SFSNLKMIESLDLSHNRLSGQIPPKLTE-----LNFL 836
           +  L ++   LS           S      +++L L +N +       L       +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 837 SNFNVSYNNLSGLIPDKGQFATFDESSYRGNL 868
               ++ N  S       +      +  RG L
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 9e-07
 Identities = 30/230 (13%), Positives = 57/230 (24%), Gaps = 12/230 (5%)

Query: 619 NLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKF 678
           +      +++  +  IP  +    N   L      L             L  +++S N  
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 679 NGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYS----SMLDMGQLSSEER 734
              I +   +                L        N   + Y     + +       +  
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 735 GPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMS 794
                   ++                    V L L+ N +           Q   +    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 795 HNFLSESIPESFSNLKMIESLDLSHNRLSGQIPP----KLTELNFLSNFN 840
           +N L E   + F        LD+S  R+   +P      L +L   S +N
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN 234

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 24/241 (9%), Positives = 60/241 (24%), Gaps = 16/241 (6%)

Query: 595 SVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNL 654
           S      Q++ ++  IP  L R  N + L         +     +   +L  + +  N++
Sbjct: 9   SNRVFLCQESKVTE-IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 655 EGQIPNQICQLTGLGMMDLSHNKFNG-------SIPSCFTNITLWSVGNLDRYRLEHLTF 707
              I   +                N                  L S   +      H   
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 708 VERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGL 767
             +  +  I    +                   +L +      +          +  +  
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 768 DLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP 827
           + +  +L  ++            L++S   +         NLK + +    + +   ++P
Sbjct: 186 NNNLEELPNDVFHGASGPVI---LDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 239

Query: 828 P 828
            
Sbjct: 240 T 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 1/207 (0%)

Query: 255 TRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTR 314
                L     +L        S    LE + +  N+          +N  KL  + +   
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 315 NNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQ 374
           NN+L +  E F     L+ L + N  +  +P         K L    ++++         
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 375 NNTKLEV-LLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDM 433
                E  +L  N +    +         L  L++S NN   +LP D+       + +D+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 434 SNNHFEGNIASSIAEMKELRFLDLSKN 460
           S        +  +  +K+LR       
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 27/217 (12%), Positives = 57/217 (26%), Gaps = 5/217 (2%)

Query: 338 NCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPD 397
              +  IP  L    +   L      L       A      LE + ++ N     ++   
Sbjct: 17  ESKVTEIPSDLPR--NAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 398 DKHDFLHH--LDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFL 455
             +    H      +NN     P+    +      +  +           I  ++++   
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKI 515
                N       + +   F  + L L+ N         +      +    +NN      
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVL 552
            +    +   V L +S   +     + + NL  L   
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 249 NCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALF 287
           +  +  +   +LDIS  ++       + NL  L   + +
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 22/230 (9%)

Query: 592 NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG 651
            +++   +   K++++  +  A      + TL     G + +    +   +NL  L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGN--LDRYRLEHLTFVE 709
           N +    P +         +  +  K   +I    +  TL        D   L  L+ ++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 710 RLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDL 769
            L ++   I   S L                 L  +        ++   +NL  +  L  
Sbjct: 133 VLYLDLNQITNISPLAG------------LTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 770 SCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSH 819
             NK++   P  +  L  +  +++ +N +S+  P   +N   +  + L++
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 34/242 (14%), Positives = 71/242 (29%), Gaps = 25/242 (10%)

Query: 605 SLSGPIPIA-LFRSSNL---LTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN 660
           S++ P  I  +F    L   + +    +  +  +     +   +  L   G  +   I  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 661 QICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYY 720
            +  L  L  ++L  N+             L  + NL +     L+     +V++I    
Sbjct: 59  -VQYLNNLIGLELKDNQIT----------DLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107

Query: 721 SSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPS 780
           S        +                                      LS         +
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 781 EIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIP----PKLTELNFL 836
            +  L ++  L    N +S+  P   ++L  +  + L +N++S   P      L  +  L
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT-L 224

Query: 837 SN 838
           +N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 22/232 (9%)

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS 214
           +L     +  G +   D++      L  +TTL      +    T +G+  L NL  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
            N I      + +               I +   +         +  +   +      + 
Sbjct: 72  DNQITDLAPLKNLT-------------KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL 334
           I+++T L  L+     +     +++++  + L  L   +  N             +L  L
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 335 RLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTN 386
           +  +  ++ I P      +L  + L +N +    P   L N + L ++ LTN
Sbjct: 179 KADDNKISDISPL-ASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 22/217 (10%)

Query: 425 LQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSD 484
           L   + +    ++    +  + A++  +  L       +   +   +    +L+ L L D
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 485 NNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMG 544
           N          +       L     K    I          +     +++        + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 545 NLSYLEVLLMSKNFFEGNI--------------PVQLLNHRRLQLFSVSENYLSGFMTTS 590
            L      + + +   G                   L N  +L      +N +S     +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 591 FNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRD 627
            ++ ++  ++L+ N +S   P+A   +SNL  + L +
Sbjct: 193 -SLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 21/229 (9%)

Query: 230 LKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDN 289
           L N   +   K+N+ D +     ++  +  L      ++      +  L +L  L L DN
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 290 NFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLL 349
                 PL +L   +      L    N L+  +          +        +V P   L
Sbjct: 74  QITDLAPLKNLTKIT-----ELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 350 HQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS 409
               + YLDL+                  +    +++ +   N          L  L   
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN-------LSKLTTLKAD 181

Query: 410 SNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLS 458
            N  +   P      L  L+ + + NN         +A    L  + L+
Sbjct: 182 DNKISDISPLAS---LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 13/132 (9%)

Query: 132 QSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILREN 191
           + L L++     +        L  L  +  L+L +N           AL +L  L + + 
Sbjct: 1   RVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQA 50

Query: 192 NIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNI---EDHLP 248
           +        G++ L  L+ L L +N +  S   Q +     L +LNL+ N++   E    
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 249 NCLNNMTRLKVL 260
                +  +  +
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 30/149 (20%)

Query: 258 KVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNM 317
           +VL ++   L+      +  L  + +L L                            +N 
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDL---------------------------SHNR 31

Query: 318 LQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNT 377
           L+           L+VL+  + +L  +     +   L+ L L +N L  +     L +  
Sbjct: 32  LRALPPALAALRCLEVLQASDNALENVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCP 90

Query: 378 KLEVLLLTNNSFTGNLQLPDDKHDFLHHL 406
           +L +L L  NS      + +   + L  +
Sbjct: 91  RLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 766 GLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIP-ESFSNLKMIESLDLSHNRLSG 824
           GL  + +    +    +   + +  L + +    + +       L  + +L +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 825 QIPPKLTELNFLSNFNVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTI 875
             P        LS  N+S+N L  L     Q  +  E    GN   C   +
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 321 QTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLE 380
           Q   +    + + L L    + VI            +D S N++        L+    L+
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR---LK 66

Query: 381 VLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSN---NH 437
            LL+ NN      +  D     L  L +++N+       D    L+ L Y+ +      +
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 438 FEGNIASSIAEMKELRFLDLSK 459
            +      I ++ ++R LD  K
Sbjct: 127 KKHYRLYVIYKVPQVRVLDFQK 148

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 19/206 (9%)

Query: 155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLS 214
           +       NL      D++    N L S+  +I   ++I+     QG+  L N+  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLN 76

Query: 215 SNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSI 274
            N +        I  L NL  L     +             +        +         
Sbjct: 77  GNKLTD------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-------G 123

Query: 275 ISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVL 334
           IS++  L +L   ++ + G   ++ +   S+L  L   +  +             +L+ L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 335 RLPNCSLNVIPPFLLHQFDLKYLDLS 360
            L    ++ +      + +L  L+L 
Sbjct: 184 YLSKNHISDLRALAGLK-NLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 16/203 (7%)

Query: 449 MKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLEN 508
             E    +L K + +  ++   L S   +  +  ++++       G   L  +  L+L  
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 509 NKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLL 568
           NK +       LK+   + L  +       +       S      +S      +    L+
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKS------LSLEHNGISDINGLV 131

Query: 569 NHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDN 628
           +  +L+   +  N ++        ++ ++ L L+ N +S  +P+A    + L  L L  N
Sbjct: 132 HLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKN 188

Query: 629 GFSGVIPHQINECSNLRFLLLRG 651
             S +    +    NL  L L  
Sbjct: 189 HISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 17/179 (9%)

Query: 354 LKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNF 413
           +  +  +++D+        +Q    +  L L  N  T             +  ++     
Sbjct: 48  IDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDI-------KPLANLKNLGWLFL 97

Query: 414 TGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTS 473
                +D+  +        +S  H   +  + +  + +L  L L  N  +     + LT 
Sbjct: 98  DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK 157

Query: 474 CFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSS 532
             +L        +           LT+LQ LYL  N  S      L   K L  L + S
Sbjct: 158 LDTLSL-----EDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 12/162 (7%)

Query: 251 LNNMTRLKVLDISFNQLSGSFPSI------ISNLTSLEYLALFDNNFEGTFPLSSLANHS 304
                 +   +    +L G  P I      +S L + ++LAL  NN E    +SSL+   
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---ISSLSGME 70

Query: 305 KLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDL 364
            L +L L         + EN             + +       +    +L+ L +S+N +
Sbjct: 71  NLRILSLGRNLIK---KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 365 DGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHL 406
                   L    KLE LLL  N    + +  +   ++   +
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQ 266
           +   L L+ N +           L +L  L L++N +    PN     + ++ L +  N+
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 267 LSGSFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFL 326
           +      +   L  L+ L L+DN         S  + + L  L L++           F 
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 327 PTFQLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLD 365
              + K L     +    P  +    D++  DL H++  
Sbjct: 149 EWLRKKSLN-GGAARCGAPSKVR---DVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 9e-04
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 6/162 (3%)

Query: 525 LVELRMSSNMLSGHIPHWM-GNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYL 583
             EL ++ N L       + G L +L  L + +N   G  P        +Q   + EN +
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 584 SGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECS 642
                  F  +  ++ L L  N +S  +P +    ++L +L+L  N F+           
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AE 149

Query: 643 NLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPS 684
            LR   L G       P++   +  + + DL H++F  S  +
Sbjct: 150 WLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN 188

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 159 LKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFI 218
            + L+L     D  +    N    L         ++          +  L +L+LS+N +
Sbjct: 24  QQALDLKGLRSDPDLVA-QNIDVVLNRRSSMAATLRII-----EENIPELLSLNLSNNRL 77

Query: 219 NG-SLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFP----- 272
                 S  + +  NL +LNL  N ++           +L+ L +  N LS +F      
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 273 --SIISNLTSLEYL 284
             +I      L  L
Sbjct: 138 ISAIRERFPKLLRL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	911
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.81

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.1e-37  Score=331.23  Aligned_cols=295  Identities=24%  Similarity=0.359  Sum_probs=205.3

Q ss_pred             CChHHHHHHHHHhhhcCCCCcCCCCCCCCcCCCCCCCCCCCCCcc--ccceeecCCC--CcEEEEecCCCCccccccccc
Q 043567           36 ACLKTERAALSEIKSFFIPFMDTQYEDPVLATWVDDGGMSSDCCN--WKGVRCNATT--GRVIQLLLNDTSKFIEYSKNY  111 (911)
Q Consensus        36 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~C~--w~gv~C~~~~--~~v~~l~L~~~~~~~~~~~~~  111 (911)
                      -|+++||+||++||+++.      +| ..+++|..+    +|||.  |+||+|+..+  +||+.+||++..+  .     
T Consensus         2 ~c~~~e~~aLl~~k~~~~------~~-~~l~sW~~~----~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l--~-----   63 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG------NP-TTLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--P-----   63 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT------CC-GGGTTCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--S-----
T ss_pred             CCCHHHHHHHHHHHHHCC------CC-CcCCCCCCC----CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCC--C-----
Confidence            499999999999999995      33 469999865    79994  9999998744  4899999988765  1     


Q ss_pred             ccCCcccccccccccCCCCCCEEeCCC-CCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCC
Q 043567          112 TYGDMVLSLNVSLFHPFEELQSLDLSN-NSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRE  190 (911)
Q Consensus       112 ~~~~~~~~~~~s~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  190 (911)
                        |.  ..+ +..+..+++|++|||++ |.++|.+|    ..++++++|++|+|++|++.+..+..+..+.+|+++++++
T Consensus        64 --g~--~~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          64 --KP--YPI-PSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             --SC--EEC-CGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             --CC--CCC-ChHHhcCccccccccccccccccccc----cccccccccchhhhccccccccccccccchhhhccccccc
Confidence              11  111 13566777777777775 66776666    5677777777777777777777777777777777777777


Q ss_pred             cccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCC-CEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCc
Q 043567          191 NNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNL-FVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSG  269 (911)
Q Consensus       191 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L-~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  269 (911)
                      |.+.+.+| ..+.++++|+++++++|.+.|.+|.. +..+..+ +.+++++|++++..|..+..+..+ .++++.+...+
T Consensus       135 N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~  211 (313)
T d1ogqa_         135 NALSGTLP-PSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEG  211 (313)
T ss_dssp             SEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEE
T ss_pred             ccccccCc-hhhccCcccceeeccccccccccccc-cccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            77666665 45677777777777777777666653 5555554 667777777777666666665443 57777777776


Q ss_pred             cCcccccCCCCCCeeeccCCcCCCccChhhhcccccccEEEecCCCccccccccCcCCCCCceEEECCCCCCC-CCChhh
Q 043567          270 SFPSIISNLTSLEYLALFDNNFEGTFPLSSLANHSKLEVLLLSTRNNMLQVQTENFLPTFQLKVLRLPNCSLN-VIPPFL  348 (911)
Q Consensus       270 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~ip~~l  348 (911)
                      .+|..+..+++++.+++++|.+.+.+|  .+                         ...++|+.|++++|++. .+|+++
T Consensus       212 ~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~-------------------------~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         212 DASVLFGSDKNTQKIHLAKNSLAFDLG--KV-------------------------GLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGG--GC-------------------------CCCTTCCEEECCSSCCEECCCGGG
T ss_pred             ccccccccccccccccccccccccccc--cc-------------------------ccccccccccCccCeecccCChHH
Confidence            677777777777777777776665444  22                         23345556666677774 677777


Q ss_pred             hccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCcc
Q 043567          349 LHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSF  389 (911)
Q Consensus       349 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  389 (911)
                      .++++|++|+|++|+++|.+|..  .++++|+.+++++|+.
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP~~--~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSE
T ss_pred             hCCCCCCEEECcCCcccccCCCc--ccCCCCCHHHhCCCcc
Confidence            77778888888888887777752  4667777777777763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.4e-33  Score=304.12  Aligned_cols=259  Identities=34%  Similarity=0.573  Sum_probs=208.9

Q ss_pred             CCcEEECcCCcCcc--cCCcCccCcCCCcEEEccC-cccccccchhhccCCCCcEEEccCcccccccCcccccccccEEE
Q 043567          524 KLVELRMSSNMLSG--HIPHWMGNLSYLEVLLMSK-NFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLY  600 (911)
Q Consensus       524 ~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  600 (911)
                      +++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|..+++++                       +|++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-----------------------~L~~L~  107 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-----------------------QLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-----------------------TCSEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc-----------------------ccchhh
Confidence            45666666666655  3455555555555555554 455555555555554                       555555


Q ss_pred             cccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCC-CeEEcCCCcCC
Q 043567          601 LQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGL-GMMDLSHNKFN  679 (911)
Q Consensus       601 Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L-~~L~Ls~N~l~  679 (911)
                      |++|++.+..|..+..+..|+.+++++|.+.+.+|..+++++.|+++++++|.+.|.+|..+..+..+ +.+++++|+++
T Consensus       108 Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             hccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence            55555555666667777888888888888888888888889999999999999988899888888776 78899999998


Q ss_pred             CCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCC
Q 043567          680 GSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGS  759 (911)
Q Consensus       680 g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  759 (911)
                      |..|..+.++.                                                                     
T Consensus       188 ~~~~~~~~~l~---------------------------------------------------------------------  198 (313)
T d1ogqa_         188 GKIPPTFANLN---------------------------------------------------------------------  198 (313)
T ss_dssp             EECCGGGGGCC---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            88877655432                                                                     


Q ss_pred             cCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeE
Q 043567          760 NLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNF  839 (911)
Q Consensus       760 ~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  839 (911)
                          ...++++++.+.|.+|..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|+.+++++.|++|
T Consensus       199 ----~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L  273 (313)
T d1ogqa_         199 ----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             ----CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEE
Confidence                2358999999999999999999999999999999998876 58999999999999999999999999999999999


Q ss_pred             eccCCcCeecCCCCCCCCccCccccCCCCCCCCCccCCCCC
Q 043567          840 NVSYNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCN  880 (911)
Q Consensus       840 ~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c~  880 (911)
                      ||++|+|+|.||+.++++.+....+.||+.|||.|+. .|.
T Consensus       274 ~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             ECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             ECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CCC
Confidence            9999999999999888999999999999999999875 673

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.6e-26  Score=251.69  Aligned_cols=343  Identities=23%  Similarity=0.258  Sum_probs=211.6

Q ss_pred             CCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhccccc
Q 043567          398 DKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSL  477 (911)
Q Consensus       398 ~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L  477 (911)
                      ..+.+|++|+++++.++ .++ .+. .+++|++|++++|++++..+  ++++++|++|++++|++.+ ++.  +..+++|
T Consensus        41 ~~l~~l~~L~l~~~~I~-~l~-gl~-~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~-i~~--l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTC
T ss_pred             HHhCCCCEEECCCCCCC-Ccc-ccc-cCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccc-ccc--ccccccc
Confidence            34556777777777665 342 333 36677777777776665332  6666777777777776653 322  3456666


Q ss_pred             ceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCc
Q 043567          478 LWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKN  557 (911)
Q Consensus       478 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  557 (911)
                      +.++++++.+++..+.  .....+.......|.+....+.................     ....+...+.........|
T Consensus       113 ~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         113 TGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             CEEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSS
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----hhhhhcccccccccccccc
Confidence            6666666655543322  22344455555555544322222111111111111111     1122333444444455544


Q ss_pred             ccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchh
Q 043567          558 FFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQ  637 (911)
Q Consensus       558 ~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~  637 (911)
                      ...  .......+++++.+++++|.+++..|. ..+++|++|++++|+++. + ..+..+++|+.|++++|.+++..  .
T Consensus       186 ~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~  258 (384)
T d2omza2         186 KVS--DISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--P  258 (384)
T ss_dssp             CCC--CCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             ccc--cccccccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--c
Confidence            433  334455667777777777777665442 245667777777777663 2 24566677777777777776543  2


Q ss_pred             hhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccc
Q 043567          638 INECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIG  717 (911)
Q Consensus       638 l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~  717 (911)
                      ++.+++|++|++++|++++..  .+..++.++.+++++|.+++. + .+                               
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~-~~-------------------------------  303 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S-PI-------------------------------  303 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G-GG-------------------------------
T ss_pred             ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc-c-cc-------------------------------
Confidence            566677777777777776433  255666777777777766531 1 11                               


Q ss_pred             cccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCc
Q 043567          718 IYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNF  797 (911)
Q Consensus       718 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~  797 (911)
                                                               ..++.++.|++++|++++..  .+..+++|++|++++|+
T Consensus       304 -----------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         304 -----------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             -----------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             -----------------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence                                                     12346788999999999653  38899999999999999


Q ss_pred             CCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCC
Q 043567          798 LSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYN  844 (911)
Q Consensus       798 l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  844 (911)
                      +++ +| .++++++|++||+++|++++.+|  +.+++.|++|+|++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            985 45 69999999999999999998765  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.1e-25  Score=245.69  Aligned_cols=341  Identities=23%  Similarity=0.248  Sum_probs=222.5

Q ss_pred             CCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEE
Q 043567          376 NTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFL  455 (911)
Q Consensus       376 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  455 (911)
                      +.+|++|+++++.++..  .....+++|++|++++|+++ .+|+ +. .+++|++|++++|++.+..+  ++.+++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-cc-CCcccccccccccccccccc--cccccccccc
Confidence            34455555555544432  11234555666666666655 3443 32 36667777777776664332  6667777777


Q ss_pred             eccCcccCCcccHHHHhcccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcC
Q 043567          456 DLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNML  535 (911)
Q Consensus       456 ~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  535 (911)
                      +++++.+++..+.   .....+.......|.+.......................     ...+.............|..
T Consensus       116 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         116 TLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             ECCSSCCCCCGGG---TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc---cccccccccccccccccccccccccccccccccccccch-----hhhhcccccccccccccccc
Confidence            7777766633221   234455555555555543332222222222222111111     12233444555555555544


Q ss_pred             cccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCccccccccccc
Q 043567          536 SGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALF  615 (911)
Q Consensus       536 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  615 (911)
                      .  ....+..+++++.+++++|.+++..|  ...+++|+.+++++|.++.. +....+++|+.+++++|.+++..+  +.
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~  260 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LS  260 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             c--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc-chhhcccccchhccccCccCCCCc--cc
Confidence            3  34456667778888888888776544  35567788888888887763 333367888888888888886543  77


Q ss_pred             CCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccC
Q 043567          616 RSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVG  695 (911)
Q Consensus       616 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~  695 (911)
                      .+++|++|++++|++++..  .+..++.++.++++.|++++  +..+..+++++.|++++|++++..|  +.        
T Consensus       261 ~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~--------  326 (384)
T d2omza2         261 GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VS--------  326 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GG--------
T ss_pred             ccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cc--------
Confidence            7889999999999998543  47788899999999999985  3457888999999999999875322  21        


Q ss_pred             CccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCccc
Q 043567          696 NLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLT  775 (911)
Q Consensus       696 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  775 (911)
                                                                                      .+++|+.|++++|+++
T Consensus       327 ----------------------------------------------------------------~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         327 ----------------------------------------------------------------SLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ----------------------------------------------------------------GCTTCCEEECCSSCCC
T ss_pred             ----------------------------------------------------------------cCCCCCEEECCCCCCC
Confidence                                                                            1357888999999998


Q ss_pred             ccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCC
Q 043567          776 GEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHN  820 (911)
Q Consensus       776 g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  820 (911)
                      + +| .++++++|++|++++|++++.+|  ++++++|+.|+|++|
T Consensus       343 ~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 D-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             C-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             C-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            4 55 68999999999999999998766  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.5e-23  Score=223.91  Aligned_cols=272  Identities=17%  Similarity=0.222  Sum_probs=182.3

Q ss_pred             CCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccC
Q 043567          501 LQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSE  580 (911)
Q Consensus       501 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~  580 (911)
                      .+.++=++++++ .+|..+  .+++++|++++|+++...+.+|.++++|++|++++|.+....|..+.++++|+.+++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            344444444444 344433  24556666666665543334555666666666666666544455555666666666666


Q ss_pred             cccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCccc--ccCchhhhcCCCccEEEccCCcccccC
Q 043567          581 NYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFS--GVIPHQINECSNLRFLLLRGNNLEGQI  658 (911)
Q Consensus       581 n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~i  658 (911)
                      |+++......  ...++.|++.+|.+.+..+..+.....++.++...|...  +..+..+..+++|+.+++++|.++ .+
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-cc
Confidence            6655433221  345666777777776655555666677777777776433  344566777888888888888887 45


Q ss_pred             ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcc
Q 043567          659 PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFT  738 (911)
Q Consensus       659 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  738 (911)
                      |..+  .++|+.|++++|..++..|..+..+                                                 
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~-------------------------------------------------  194 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKGL-------------------------------------------------  194 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTTC-------------------------------------------------
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhcc-------------------------------------------------
Confidence            5543  5788888888888776665544332                                                 


Q ss_pred             cccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEecc
Q 043567          739 FDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLS  818 (911)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  818 (911)
                                             +.++.|++++|++++..|..+.++++|++|+|++|+|+ .+|++++++++|++|+|+
T Consensus       195 -----------------------~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         195 -----------------------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             -----------------------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             -----------------------ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence                                   35667888999998888888889999999999999997 678889999999999999


Q ss_pred             CCcCcccCCCC------CCCCCCCCeEeccCCcCe-ecCCCC
Q 043567          819 HNRLSGQIPPK------LTELNFLSNFNVSYNNLS-GLIPDK  853 (911)
Q Consensus       819 ~N~l~g~ip~~------l~~l~~L~~L~ls~N~l~-g~iP~~  853 (911)
                      +|+|+..-+..      +..+..|+.|++++|++. +.+|.+
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHh
Confidence            99998542222      345678999999999984 566543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.7e-23  Score=219.48  Aligned_cols=259  Identities=22%  Similarity=0.265  Sum_probs=159.2

Q ss_pred             CCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEcc
Q 043567          500 QLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS  579 (911)
Q Consensus       500 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls  579 (911)
                      ++++|+|++|+|+...+..|..+++|++|++++|++....|..|.++++|+.|++++|+++ .+|..+  ...+..++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhcc
Confidence            3444444444444332334444444444555444444444444444555555555555444 233222  2344455555


Q ss_pred             CcccccccCccc-ccccccEEEcccCccc--ccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccc
Q 043567          580 ENYLSGFMTTSF-NISSVEHLYLQKNSLS--GPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEG  656 (911)
Q Consensus       580 ~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~--~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  656 (911)
                      +|.+.+..+..+ ....+..++...|...  ...+..+..+++|+.+++++|.++ .+|..+  +++|++|++++|..++
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCC
Confidence            555544433333 3444445555554332  233456677778888888888877 455443  5788888888888888


Q ss_pred             cCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCC
Q 043567          657 QIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGP  736 (911)
Q Consensus       657 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~  736 (911)
                      ..+..+..++.++.|++++|.+++..|..+.+                                                
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~------------------------------------------------  217 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------  217 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred             CChhHhhccccccccccccccccccccccccc------------------------------------------------
Confidence            88888888888888888888887655544432                                                


Q ss_pred             cccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccc------cccccC
Q 043567          737 FTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPE------SFSNLK  810 (911)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~------~l~~l~  810 (911)
                                              +++|++|+|++|+|+ .+|++|..+++|++|+|++|+|+..-+.      ....+.
T Consensus       218 ------------------------l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         218 ------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             ------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             ------------------------cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccC
Confidence                                    246778899999888 6788899999999999999999854332      334577


Q ss_pred             CCCEEeccCCcCc-ccCC-CCCCCCCCCC
Q 043567          811 MIESLDLSHNRLS-GQIP-PKLTELNFLS  837 (911)
Q Consensus       811 ~L~~LdLs~N~l~-g~ip-~~l~~l~~L~  837 (911)
                      +|+.|+|++|.++ ..+| ..|.-+....
T Consensus       273 ~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         273 SYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             CCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             CCCEEECCCCcCccCcCCHhHhcccccCc
Confidence            8999999999885 3443 3444443333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=220.99  Aligned_cols=150  Identities=17%  Similarity=0.200  Sum_probs=74.1

Q ss_pred             EccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEcc-Cccc
Q 043567          505 YLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVS-ENYL  583 (911)
Q Consensus       505 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls-~n~l  583 (911)
                      +.++++++ .+|..+  .+.+++|+|++|++++..+.+|.++++|++|++++|++.+..+..+.....+..++.. .+.+
T Consensus        17 ~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCC-ccCCCC--CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            34444444 344433  2445666666666654444556666666666666666655545444445555554443 2223


Q ss_pred             ccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhh
Q 043567          584 SGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQIC  663 (911)
Q Consensus       584 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~  663 (911)
                      ....                       |..+.++++|++|++++|.+.+..+..+...++|+.+++++|++++..+..+.
T Consensus        94 ~~l~-----------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~  150 (284)
T d1ozna_          94 RSVD-----------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (284)
T ss_dssp             CCCC-----------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccc-----------------------chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc
Confidence            3322                       33444444455555555554444444444445555555555555443344444


Q ss_pred             cCCCCCeEEcCCCcCCC
Q 043567          664 QLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       664 ~l~~L~~L~Ls~N~l~g  680 (911)
                      .+++|+.|++++|++++
T Consensus       151 ~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             TCTTCCEEECCSSCCCE
T ss_pred             cccchhhcccccCcccc
Confidence            45555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.2e-23  Score=217.89  Aligned_cols=208  Identities=22%  Similarity=0.210  Sum_probs=172.5

Q ss_pred             CCcEEEccCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCC-CCcccccCchhhhcCCCccEEEc
Q 043567          572 RLQLFSVSENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLR-DNGFSGVIPHQINECSNLRFLLL  649 (911)
Q Consensus       572 ~L~~L~ls~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L  649 (911)
                      .+++|++++|++++..+..+ +++.|++|++++|++.+..+..+..+..++.++.. .|.+....|..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34555555555555554444 56666677777777766666677777888888765 56677666888999999999999


Q ss_pred             cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCC
Q 043567          650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQL  729 (911)
Q Consensus       650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l  729 (911)
                      ++|.+.+..+..+...++|+.+++++|++++..+..|..                                         
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-----------------------------------------  151 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------------------------------  151 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhcc-----------------------------------------
Confidence            999998777888889999999999999998655544432                                         


Q ss_pred             CCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCcccccccccc
Q 043567          730 SSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNL  809 (911)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l  809 (911)
                                                     .+.|+.|++++|++++..|..+.++++|+.+++++|++++..|..|+++
T Consensus       152 -------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         152 -------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             -------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             -------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh
Confidence                                           2367889999999998888999999999999999999999999999999


Q ss_pred             CCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCC
Q 043567          810 KMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       810 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  851 (911)
                      ++|++||+++|++++..|..+..++.|++|++++|++.+..+
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            999999999999999988999999999999999999998655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-21  Score=199.26  Aligned_cols=199  Identities=20%  Similarity=0.180  Sum_probs=148.0

Q ss_pred             CCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccC
Q 043567          572 RLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRG  651 (911)
Q Consensus       572 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  651 (911)
                      .+.+++.+++.++.. |..+ .+.+++|+|++|++++..+..|.++++|++|+|++|+++. +| .++.+++|++|+|++
T Consensus        11 ~~~~v~C~~~~L~~i-P~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCee-CcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            334445555555432 2222 1356677777777765555667778888888888888873 44 346778888888888


Q ss_pred             CcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCC
Q 043567          652 NNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSS  731 (911)
Q Consensus       652 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~  731 (911)
                      |+++ .+|..+..+++|+.|++++|.+.+..+..+.                                            
T Consensus        87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------------------------------  121 (266)
T d1p9ag_          87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR--------------------------------------------  121 (266)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT--------------------------------------------
T ss_pred             cccc-ccccccccccccccccccccccceeeccccc--------------------------------------------
Confidence            8887 4566778888888888888887643332221                                            


Q ss_pred             CCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCC
Q 043567          732 EERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKM  811 (911)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~  811 (911)
                                                  .+..+..|++++|.+++..+..+..++.|+.|++++|++++..|..|+.+++
T Consensus       122 ----------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_         122 ----------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             ----------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             ----------------------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccc
Confidence                                        1235677899999998776777788999999999999999888888999999


Q ss_pred             CCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCee
Q 043567          812 IESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       812 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  848 (911)
                      |++|||++|+|+ .+|.++..++.|++|+|++|++..
T Consensus       174 L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            999999999999 889888899999999999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.7e-20  Score=193.88  Aligned_cols=177  Identities=24%  Similarity=0.275  Sum_probs=131.4

Q ss_pred             CCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEc
Q 043567          499 TQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSV  578 (911)
Q Consensus       499 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~l  578 (911)
                      +++++|+|++|+|++..+..|..+++|++|+|++|+++. +| .++.+++|++|++++|+++ ..+..+..+++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            355666666666665444556666666666666666652 33 2455666667777766666 34555666677777777


Q ss_pred             cCcccccccCccc-ccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCccccc
Q 043567          579 SENYLSGFMTTSF-NISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQ  657 (911)
Q Consensus       579 s~n~l~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  657 (911)
                      ++|.+.+..+..+ .+.++++|++++|.++...+..+..+++++.+++++|++++..+..+..+++|++|+|++|+|+ .
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence            7777766666555 6777888888888887666667777889999999999999887888899999999999999998 8


Q ss_pred             CChhhhcCCCCCeEEcCCCcCC
Q 043567          658 IPNQICQLTGLGMMDLSHNKFN  679 (911)
Q Consensus       658 ip~~l~~l~~L~~L~Ls~N~l~  679 (911)
                      +|+++..+++|+.|+|++|++.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhHCCCCCCCEEEecCCCCC
Confidence            8988999999999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-20  Score=209.80  Aligned_cols=382  Identities=19%  Similarity=0.181  Sum_probs=226.9

Q ss_pred             CccEEEccCCcCCcCCChhHHHhccCCcEEEcccCcccc----ccchhhhcCCCCcEEeccCcccCCcccHHHHh----c
Q 043567          402 FLHHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEG----NIASSIAEMKELRFLDLSKNNFSGELSAALLT----S  473 (911)
Q Consensus       402 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~----~  473 (911)
                      +|++||+++|++++..-..+...+++++.|+|++|.++.    .++..+..+++|++|+|++|+++..-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467777777777643323334457888888888888773    34455677888899999888875221112221    1


Q ss_pred             ccccceeeccCcccccc----cCCCCCCCCCCCEEEccCccccccccccc----c-CCCCCcEEECcCCcCccc----CC
Q 043567          474 CFSLLWLGLSDNNFYGR----IFPGYMNLTQLQYLYLENNKFSGKIEEGL----L-KSKKLVELRMSSNMLSGH----IP  540 (911)
Q Consensus       474 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~-~l~~L~~L~Ls~n~l~~~----~p  540 (911)
                      ..+|+.|++++|.+++.    ++..+..+++|++|++++|.++......+    . ..............+...    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24677788887777653    23455667778888888887764322111    1 112233333333332211    01


Q ss_pred             cCccCcCCCcEEEccCcccccc----cchhh-ccCCCCcEEEccCcccccccCc----cc-ccccccEEEcccCccccc-
Q 043567          541 HWMGNLSYLEVLLMSKNFFEGN----IPVQL-LNHRRLQLFSVSENYLSGFMTT----SF-NISSVEHLYLQKNSLSGP-  609 (911)
Q Consensus       541 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l-~~~~~L~~L~ls~n~l~~~~~~----~~-~~~~L~~L~Ls~n~l~~~-  609 (911)
                      ..+.....++.++++++.....    ....+ ........+++..+.+......    .. ..+.++.+++++|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            1123345677777776655421    11111 1223455666666654432111    11 456677777777765422 


Q ss_pred             ----ccccccCCCCCCEEeCCCCccccc----CchhhhcCCCccEEEccCCcccccCChhh----h-cCCCCCeEEcCCC
Q 043567          610 ----IPIALFRSSNLLTLDLRDNGFSGV----IPHQINECSNLRFLLLRGNNLEGQIPNQI----C-QLTGLGMMDLSHN  676 (911)
Q Consensus       610 ----~p~~l~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~l----~-~l~~L~~L~Ls~N  676 (911)
                          .+........++.+++++|.+...    ....+...+.++.+++++|.++......+    . ....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                233334456788888888877532    22345567778888888887764322222    1 2356778888877


Q ss_pred             cCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeec
Q 043567          677 KFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVY  756 (911)
Q Consensus       677 ~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  756 (911)
                      .++..-...+.++.                                                                  
T Consensus       323 ~l~~~~~~~l~~~~------------------------------------------------------------------  336 (460)
T d1z7xw1         323 SFTAACCSHFSSVL------------------------------------------------------------------  336 (460)
T ss_dssp             CCBGGGHHHHHHHH------------------------------------------------------------------
T ss_pred             chhhhhhhhccccc------------------------------------------------------------------
Confidence            76532111111100                                                                  


Q ss_pred             cCCcCccccEEEcccCccccc----CCcccc-CCCCCCEEECCCCcCCcc----ccccccccCCCCEEeccCCcCcccCC
Q 043567          757 NGSNLDYMVGLDLSCNKLTGE----IPSEIG-ELQEIPVLNMSHNFLSES----IPESFSNLKMIESLDLSHNRLSGQIP  827 (911)
Q Consensus       757 ~~~~l~~L~~LdLs~N~l~g~----ip~~i~-~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~ip  827 (911)
                        ...+.|++|||++|+++++    +++.+. ..+.|++|+|++|+|+..    +++.+...++|++|||++|+++....
T Consensus       337 --~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         337 --AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             --HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             --ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence              1124688899999999753    444443 467799999999999853    56667788999999999999986433


Q ss_pred             CCC----C-CCCCCCeEeccCCcCeecCC
Q 043567          828 PKL----T-ELNFLSNFNVSYNNLSGLIP  851 (911)
Q Consensus       828 ~~l----~-~l~~L~~L~ls~N~l~g~iP  851 (911)
                      ..+    . +.+.|++|++++|++....+
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            322    2 34579999999999876543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1e-16  Score=173.84  Aligned_cols=136  Identities=21%  Similarity=0.284  Sum_probs=93.1

Q ss_pred             CCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCC-CCC
Q 043567          130 ELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKL-KNL  208 (911)
Q Consensus       130 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l-~~L  208 (911)
                      ++++|||+++.++.. |    +   .+++|++|++++|+|+ .+|..   ..+|+.|++++|+++ .++     .+ +.|
T Consensus        39 ~l~~LdLs~~~L~~l-p----~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~-----~lp~~L  100 (353)
T d1jl5a_          39 QAHELELNNLGLSSL-P----E---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS-----DLPPLL  100 (353)
T ss_dssp             TCSEEECTTSCCSCC-C----S---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC-----SCCTTC
T ss_pred             CCCEEEeCCCCCCCC-C----C---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh-----hhcccc
Confidence            578888888888753 3    1   2467888888888887 44543   457888888888776 232     22 358


Q ss_pred             CEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccC
Q 043567          209 EALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFD  288 (911)
Q Consensus       209 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  288 (911)
                      ++|++++|.+. .+|.  ++.+++|++|+++++.+... +.   ....+..+.+..+...  .+..+..++.++.+++++
T Consensus       101 ~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         101 EYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             CEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCS
T ss_pred             ccccccccccc-cccc--hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccc
Confidence            88888888887 5664  57788888888888877653 22   2345667777665544  334566777788888877


Q ss_pred             CcCC
Q 043567          289 NNFE  292 (911)
Q Consensus       289 n~l~  292 (911)
                      |...
T Consensus       172 n~~~  175 (353)
T d1jl5a_         172 NSLK  175 (353)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            7665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2e-16  Score=171.59  Aligned_cols=306  Identities=23%  Similarity=0.252  Sum_probs=178.8

Q ss_pred             CceEEECCCCCCCCCChhhhccCCCCEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEcc
Q 043567          330 QLKVLRLPNCSLNVIPPFLLHQFDLKYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDIS  409 (911)
Q Consensus       330 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls  409 (911)
                      ++++|+|+++.++.+|+.   .++|++|++++|+++ .+|.    ...+|+.|++++|+++.....    .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhh----cccccccccc
Confidence            466777777777777753   346777777777776 6664    245677777777766643221    2357777777


Q ss_pred             CCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeeccCccccc
Q 043567          410 SNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLSDNNFYG  489 (911)
Q Consensus       410 ~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~~n~l~~  489 (911)
                      +|.+. .+|.. + .+++|++|+++++.+.....    ....+..+.+..+......   .+..++.++.++++.|....
T Consensus       107 ~n~l~-~lp~~-~-~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~---~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         107 NNQLE-KLPEL-Q-NSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SSCCS-SCCCC-T-TCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSS
T ss_pred             ccccc-cccch-h-hhccceeecccccccccccc----ccccccchhhccccccccc---cccccccceecccccccccc
Confidence            77766 55543 2 36677777777776653322    2344555655555443111   12345566666666665543


Q ss_pred             ccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhcc
Q 043567          490 RIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLN  569 (911)
Q Consensus       490 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  569 (911)
                      ...    .....+.+...++.+. .++ .+..++.|+.+++++|... .++.   ...++..+.+.++.+.. .+.   .
T Consensus       177 ~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~-~~~---~  242 (353)
T d1jl5a_         177 LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPE---L  242 (353)
T ss_dssp             CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCC---C
T ss_pred             ccc----cccccccccccccccc-ccc-ccccccccccccccccccc-cccc---ccccccccccccccccc-ccc---c
Confidence            211    1123344555544443 222 2455667777777776655 2332   23455666666666552 221   2


Q ss_pred             CCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEc
Q 043567          570 HRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLL  649 (911)
Q Consensus       570 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  649 (911)
                      ...+...++..+.+.+...-   .......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|++|+|
T Consensus       243 ~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L  311 (353)
T d1jl5a_         243 PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIA  311 (353)
T ss_dssp             CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             cccccccccccccccccccc---cchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEEC
Confidence            34455566655554432211   12334556666655532    233578999999999988 56754   568899999


Q ss_pred             cCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccc
Q 043567          650 RGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFT  687 (911)
Q Consensus       650 ~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  687 (911)
                      ++|+|+ .+|+.   +++|+.|+|++|+++ .+|....
T Consensus       312 ~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~  344 (353)
T d1jl5a_         312 SFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE  344 (353)
T ss_dssp             CSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT
T ss_pred             CCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc
Confidence            999988 67753   467899999999987 5665433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.6e-20  Score=207.77  Aligned_cols=110  Identities=19%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             CCcEEeCCCCCCCccc-hhhhcCCCCCCEEEcCCcccCCccC---hhhhcCCCCCCEEeCCCCCCCCccCcccc-----c
Q 043567          158 RLKILNLGYNYFDDSI-FLYLNALTSLTTLILRENNIQGSRT---KQGLSKLKNLEALDLSSNFINGSLESQGI-----C  228 (911)
Q Consensus       158 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~-----~  228 (911)
                      +|++||+++|++++.. ...+..++++++|+|++|.++....   ...+..+++|++|||++|.|+. .....+     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~-~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh-HHHHHHHHHHhc
Confidence            4778888888887643 4446677888888888887752111   1335667777777777777641 111111     1


Q ss_pred             CCCCCCEEeccCCcCCCC----CCcccCCCCCCcEEEccCCcCC
Q 043567          229 ELKNLFVLNLEKNNIEDH----LPNCLNNMTRLKVLDISFNQLS  268 (911)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  268 (911)
                      ...+|++|+|++|.+++.    ++..+..+++|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            223466666666655432    2333444555555555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.2e-16  Score=161.68  Aligned_cols=188  Identities=20%  Similarity=0.233  Sum_probs=126.3

Q ss_pred             cccccceeeccCcccccccCCCCCCCCCCCEEEccCccccccccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEE
Q 043567          473 SCFSLLWLGLSDNNFYGRIFPGYMNLTQLQYLYLENNKFSGKIEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVL  552 (911)
Q Consensus       473 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  552 (911)
                      .+.+|+.|++.+|.++..  +.+..+++|++|++++|++++..|  +..+++++++++++|.++. ++ .+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-ccccccccccc
Confidence            344555555555555432  235566677777777776664432  5666777777777776652 22 46667777777


Q ss_pred             EccCcccccccchhhccCCCCcEEEccCcccccccCcccccccccEEEcccCcccccccccccCCCCCCEEeCCCCcccc
Q 043567          553 LMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSG  632 (911)
Q Consensus       553 ~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~  632 (911)
                      +++++...+.  ..+...+.+..+.++.+.+....+ ...+++|++|++++|.+.+..  .+.++++|+.|++++|++++
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchhhh-hccccccccccccccccccch--hhcccccceecccCCCccCC
Confidence            7777766543  234556677777777777665433 236677888888888876433  37788889999999998885


Q ss_pred             cCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCC
Q 043567          633 VIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH  675 (911)
Q Consensus       633 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~  675 (911)
                       +| .++++++|++|+|++|++++ +| .+.++++|+.|++++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence             33 47888899999999998885 44 378889999988863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.2e-16  Score=156.88  Aligned_cols=141  Identities=23%  Similarity=0.332  Sum_probs=76.2

Q ss_pred             EeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeC
Q 043567          134 LDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDL  213 (911)
Q Consensus       134 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  213 (911)
                      ++++.+.+++..      .++.+.+|++|++.+|.++..  ..+.++++|++|++++|++.+..+   +.++++|+++++
T Consensus        24 ~~l~~~~~~d~~------~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~   92 (227)
T d1h6ua2          24 IAAGKSNVTDTV------TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELEL   92 (227)
T ss_dssp             HHTTCSSTTSEE------CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEEC
T ss_pred             HHhCCCCcCCcC------CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc---cccccccccccc
Confidence            444555555442      234455666666666666532  235566666666666666653222   556666666666


Q ss_pred             CCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCC
Q 043567          214 SSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE  292 (911)
Q Consensus       214 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  292 (911)
                      ++|.++ .++  .+.++++|++++++++...+.  ..+...+.++.+.++.+.+...  ..+.+.++|++|++++|.+.
T Consensus        93 ~~n~~~-~i~--~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2          93 SGNPLK-NVS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             CSCCCS-CCG--GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             cccccc-ccc--ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence            666655 333  255666666666666655542  2244555566666655555432  22445555666666555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.2e-16  Score=155.24  Aligned_cols=165  Identities=30%  Similarity=0.382  Sum_probs=133.7

Q ss_pred             CCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCC
Q 043567          127 PFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLK  206 (911)
Q Consensus       127 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  206 (911)
                      .+..|++|++++|.+++.      ..+..+++|++|++++|.+++..  .++.+++|++|++++|++++ ++  .+.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l------~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~--~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS--SLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG--GGTTCT
T ss_pred             HhcCccEEECcCCCCCCc------hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc--cccccc
Confidence            356789999999988775      34778899999999999988644  36788999999999999874 43  488899


Q ss_pred             CCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeec
Q 043567          207 NLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLAL  286 (911)
Q Consensus       207 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  286 (911)
                      +|+.|++++|.+. .++  .+.++++|+++++++|.+++  +..+..+++|+++++++|++++. + .++++++|++|++
T Consensus       113 ~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~L  185 (210)
T d1h6ta2         113 KLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYL  185 (210)
T ss_dssp             TCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred             ccccccccccccc-ccc--cccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEEC
Confidence            9999999999886 444  37888999999999998876  34577888999999999998854 3 3888999999999


Q ss_pred             cCCcCCCccChhhhcccccccEEEec
Q 043567          287 FDNNFEGTFPLSSLANHSKLEVLLLS  312 (911)
Q Consensus       287 ~~n~l~~~~p~~~l~~l~~L~~L~L~  312 (911)
                      ++|.++ .+|  .+.++++|++|+|+
T Consensus       186 s~N~i~-~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKNHIS-DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCC-BCG--GGTTCTTCSEEEEE
T ss_pred             CCCCCC-CCh--hhcCCCCCCEEEcc
Confidence            999887 455  57888888888886

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5e-16  Score=154.65  Aligned_cols=165  Identities=21%  Similarity=0.347  Sum_probs=119.9

Q ss_pred             cccccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEE
Q 043567          593 ISSVEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMD  672 (911)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~  672 (911)
                      +.+|++|++++|.++.. + .+..+++|++|++++|++++. + .++.+++|++|++++|++++ +| .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            45666777777776642 2 466778888888888888753 3 36778888888888888874 44 477788888888


Q ss_pred             cCCCcCCCCCCcccccccccccCCccccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccc
Q 043567          673 LSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNR  752 (911)
Q Consensus       673 Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  752 (911)
                      +++|.+.. ++ .+.                                                                 
T Consensus       119 l~~~~~~~-~~-~l~-----------------------------------------------------------------  131 (210)
T d1h6ta2         119 LEHNGISD-IN-GLV-----------------------------------------------------------------  131 (210)
T ss_dssp             CTTSCCCC-CG-GGG-----------------------------------------------------------------
T ss_pred             cccccccc-cc-ccc-----------------------------------------------------------------
Confidence            88887642 11 111                                                                 


Q ss_pred             eeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCC
Q 043567          753 YEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTE  832 (911)
Q Consensus       753 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~  832 (911)
                             .++.++.+++++|.+++  +..+..+++|+++++++|++++. +. ++++++|+.|||++|+++. +| .++.
T Consensus       132 -------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~  198 (210)
T d1h6ta2         132 -------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAG  198 (210)
T ss_dssp             -------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTT
T ss_pred             -------ccccccccccccccccc--ccccccccccccccccccccccc-cc-ccCCCCCCEEECCCCCCCC-Ch-hhcC
Confidence                   12356778888888874  33567788899999999998854 33 8888999999999999884 55 5888


Q ss_pred             CCCCCeEeccC
Q 043567          833 LNFLSNFNVSY  843 (911)
Q Consensus       833 l~~L~~L~ls~  843 (911)
                      +++|++|+|++
T Consensus       199 l~~L~~L~Ls~  209 (210)
T d1h6ta2         199 LKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEEEEE
T ss_pred             CCCCCEEEccC
Confidence            89999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.2e-16  Score=151.36  Aligned_cols=163  Identities=30%  Similarity=0.435  Sum_probs=129.9

Q ss_pred             cCCCCCCEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCC
Q 043567          126 HPFEELQSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKL  205 (911)
Q Consensus       126 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  205 (911)
                      ..++++++|++++|.++..      +.+..+++|++|++++|.+++..+  ++++++|++|++++|.+. .++  .+.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l------~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~--~l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT--PLANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTC
T ss_pred             HHhcCCCEEECCCCCCCCc------cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc--ccccc
Confidence            3467889999999988764      457788999999999999886543  888999999999999876 333  47889


Q ss_pred             CCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeee
Q 043567          206 KNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLA  285 (911)
Q Consensus       206 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  285 (911)
                      ++|++|++++|.+. .++  .+.++++|+.|++++|.+.. + +.+..+++|+.|++++|++++. + .++++++|++|+
T Consensus       106 ~~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~  178 (199)
T d2omxa2         106 TNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLD  178 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEE
T ss_pred             cccccccccccccc-ccc--ccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEE
Confidence            99999999998886 333  37888999999999998876 3 3588889999999999998854 3 488899999999


Q ss_pred             ccCCcCCCccChhhhcccccccEE
Q 043567          286 LFDNNFEGTFPLSSLANHSKLEVL  309 (911)
Q Consensus       286 L~~n~l~~~~p~~~l~~l~~L~~L  309 (911)
                      +++|++++ ++  .++.+++|+.|
T Consensus       179 ls~N~i~~-i~--~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSD-IS--VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCC-CG--GGGGCTTCSEE
T ss_pred             CCCCCCCC-Cc--cccCCCCCCcC
Confidence            99998874 44  46777777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=161.82  Aligned_cols=80  Identities=23%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             cccEEEcccCcccccCCccccCCCCCCEE-ECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEec
Q 043567          763 YMVGLDLSCNKLTGEIPSEIGELQEIPVL-NMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNV  841 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~ip~~i~~l~~L~~L-~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  841 (911)
                      .++.|++++|+++ .++.......+++.+ ++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+++++
T Consensus       154 ~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            4556788888887 444444445555444 56777777544556788888888888888888544455777777776665


Q ss_pred             cC
Q 043567          842 SY  843 (911)
Q Consensus       842 s~  843 (911)
                      .+
T Consensus       233 ~~  234 (242)
T d1xwdc1         233 YN  234 (242)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.8e-16  Score=155.53  Aligned_cols=85  Identities=21%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             cEEEcccCcccccccccccCCCCCCEEeCCCCcccccC-chhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCC
Q 043567          597 EHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVI-PHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSH  675 (911)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~  675 (911)
                      ++++.++++++ .+|..+.  +++++|+|++|++++.+ +..|.++++|++|+|++|++.+..+..+..+++|+.|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555555 4554442  45666666666665433 34456666666666666666655666666666666666666


Q ss_pred             CcCCCCCCc
Q 043567          676 NKFNGSIPS  684 (911)
Q Consensus       676 N~l~g~ip~  684 (911)
                      |++++..|.
T Consensus        88 N~l~~l~~~   96 (192)
T d1w8aa_          88 NKIKEISNK   96 (192)
T ss_dssp             CCCCEECSS
T ss_pred             ccccccCHH
Confidence            665543333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-16  Score=158.92  Aligned_cols=77  Identities=16%  Similarity=0.001  Sum_probs=36.9

Q ss_pred             ccEEEccCCcCCcCCChhHHHhccCCcEE-EcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceee
Q 043567          403 LHHLDISSNNFTGKLPQDMGIILQKLLYM-DMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLG  481 (911)
Q Consensus       403 L~~L~ls~n~l~~~ip~~~~~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~  481 (911)
                      ++.|++++|+++ .++...+. .++++++ ++.+|+++...+..|.++++|++|++++|+++ .+|...+..+++|+.++
T Consensus       155 l~~L~l~~n~l~-~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         155 SVILWLNKNGIQ-EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CEEEECCSSCCC-EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSS
T ss_pred             ceeeeccccccc-cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCc
Confidence            444444444444 33333332 3333333 33444555333344555666666666666665 55554445555555554


Q ss_pred             c
Q 043567          482 L  482 (911)
Q Consensus       482 L  482 (911)
                      +
T Consensus       232 ~  232 (242)
T d1xwdc1         232 T  232 (242)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=4.4e-16  Score=152.77  Aligned_cols=157  Identities=24%  Similarity=0.281  Sum_probs=90.2

Q ss_pred             CCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccC-ChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCcc
Q 043567          620 LLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQI-PNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLD  698 (911)
Q Consensus       620 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~  698 (911)
                      .++++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|..+++|+.|+|++|++.+..+..+..+         
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~---------   77 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------   77 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC---------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc---------
Confidence            356777777777 5666553  46777777777776543 4445666667766666666665444433221         


Q ss_pred             ccccccchhhhhccccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccC
Q 043567          699 RYRLEHLTFVERLDVNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEI  778 (911)
Q Consensus       699 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  778 (911)
                                                                                     +.|+.|+|++|++++..
T Consensus        78 ---------------------------------------------------------------~~L~~L~Ls~N~l~~l~   94 (192)
T d1w8aa_          78 ---------------------------------------------------------------SHIQELQLGENKIKEIS   94 (192)
T ss_dssp             ---------------------------------------------------------------TTCCEEECCSCCCCEEC
T ss_pred             ---------------------------------------------------------------cccceeeeccccccccC
Confidence                                                                           24555666666666555


Q ss_pred             CccccCCCCCCEEECCCCcCCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCcCeecCCC
Q 043567          779 PSEIGELQEIPVLNMSHNFLSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNNLSGLIPD  852 (911)
Q Consensus       779 p~~i~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  852 (911)
                      |..|.++++|++|+|++|+|++..|.+|..+++|++|+|++|.+.+..+... -...++.+.+..|.+.+..|.
T Consensus        95 ~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             HHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence            5566666666666666666666556666666666666666666654322111 011233444555555554443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.6e-15  Score=145.62  Aligned_cols=142  Identities=25%  Similarity=0.296  Sum_probs=88.5

Q ss_pred             EEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEe
Q 043567          133 SLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALD  212 (911)
Q Consensus       133 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  212 (911)
                      .++++.+.+++.+.      ...++++++|++++|.+...  ..+..+++|++|++++|++++..   .+.++++|++|+
T Consensus        22 ~~~l~~~~~~~~~~------~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~   90 (199)
T d2omxa2          22 KTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDIL   90 (199)
T ss_dssp             HHHTTCSSTTSEEC------HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEE
T ss_pred             HHHhCCCCCCCccC------HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc---cccCCccccccc
Confidence            34455666655433      23456777777777777642  24666777777777777776432   266777777777


Q ss_pred             CCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCCCCeeeccCCcCC
Q 043567          213 LSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTSLEYLALFDNNFE  292 (911)
Q Consensus       213 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  292 (911)
                      +++|.+. .++.  +.++++|++|++++|.+...  ..+..+++|+.|++++|++.. + +.+..+++|+.|++.+|+++
T Consensus        91 l~~n~~~-~~~~--l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2          91 MNNNQIA-DITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc-cccc--cccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc
Confidence            7777665 3432  66677777777776666552  235666677777777776653 2 24666666666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.3e-15  Score=154.51  Aligned_cols=224  Identities=19%  Similarity=0.154  Sum_probs=146.1

Q ss_pred             CEEECCCCCCCCCCchhhhhcCCcccEEEccCCccccccCCCCCCCCCccEEEccCCcCCcCCChhHHHhccCCcEEEcc
Q 043567          355 KYLDLSHNDLDGAFPTWALQNNTKLEVLLLTNNSFTGNLQLPDDKHDFLHHLDISSNNFTGKLPQDMGIILQKLLYMDMS  434 (911)
Q Consensus       355 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls  434 (911)
                      +.+|++++.+.......+..  .....+.+......... .......+|++|+++++.+++.....+...+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46777776664333333322  23445555544443221 2223556789999998887755555556668999999999


Q ss_pred             cCccccccchhhhcCCCCcEEeccCc-ccCCcccHHHHhcccccceeeccCc-cccccc-CCCCC-CCCCCCEEEccCc-
Q 043567          435 NNHFEGNIASSIAEMKELRFLDLSKN-NFSGELSAALLTSCFSLLWLGLSDN-NFYGRI-FPGYM-NLTQLQYLYLENN-  509 (911)
Q Consensus       435 ~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~g~i~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~-~l~~L~~L~L~~n-  509 (911)
                      +|.+++..+..++.+++|++|+++++ .++...-..+...+++|++|+++++ .+++.. ...+. ..++|+.|+++++ 
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99998888888999999999999985 5553323344567888999998886 343221 11122 2467888888865 


Q ss_pred             -ccccc-ccccccCCCCCcEEECcCCc-CcccCCcCccCcCCCcEEEccCc-ccccccchhhccCCCCcEEEccCc
Q 043567          510 -KFSGK-IEEGLLKSKKLVELRMSSNM-LSGHIPHWMGNLSYLEVLLMSKN-FFEGNIPVQLLNHRRLQLFSVSEN  581 (911)
Q Consensus       510 -~l~~~-~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~ls~n  581 (911)
                       .++.. +......+++|++|++++|. +++.....+.++++|++|++++| .+++.....+.++++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             34322 23334567788888888764 66666667777888888888875 566555666777777777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.5e-15  Score=153.83  Aligned_cols=257  Identities=18%  Similarity=0.192  Sum_probs=142.0

Q ss_pred             cEEEccCCcCCcCCChhHHHhccCCcEEEcccCccccccchhhhcCCCCcEEeccCcccCCcccHHHHhcccccceeecc
Q 043567          404 HHLDISSNNFTGKLPQDMGIILQKLLYMDMSNNHFEGNIASSIAEMKELRFLDLSKNNFSGELSAALLTSCFSLLWLGLS  483 (911)
Q Consensus       404 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~i~~~~~~~~~~L~~L~L~  483 (911)
                      +++|++++.+.......+..  .....+.++.......+. ......+|++|+++++.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46677776654322222221  345566666655543222 233456788888888877655455556666666666666


Q ss_pred             CcccccccCCCCCCCCCCCEEEccCc-ccccc-ccccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCccccc
Q 043567          484 DNNFYGRIFPGYMNLTQLQYLYLENN-KFSGK-IEEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEG  561 (911)
Q Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  561 (911)
                      ++.+++..+..++.+++|++|++++| .++.. +......+++|++|++++|.                       .++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~-----------------------~~~~  136 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DFTE  136 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TCCH
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc-----------------------cccc
Confidence            66665555555555566666666654 33321 11112334555555555432                       1211


Q ss_pred             c-cchhhcc-CCCCcEEEccCcc--cccc-cCccc-ccccccEEEcccC-cccccccccccCCCCCCEEeCCCC-ccccc
Q 043567          562 N-IPVQLLN-HRRLQLFSVSENY--LSGF-MTTSF-NISSVEHLYLQKN-SLSGPIPIALFRSSNLLTLDLRDN-GFSGV  633 (911)
Q Consensus       562 ~-~p~~l~~-~~~L~~L~ls~n~--l~~~-~~~~~-~~~~L~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~Ls~N-~l~~~  633 (911)
                      . +...+.. ++.|+.|+++++.  ++.. +.... ++++|++|++++| .+++.....+.++++|++|++++| .+++.
T Consensus       137 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            1 1111211 2445555555431  2211 11111 4667777777765 356666677778888888888885 56666


Q ss_pred             CchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccc
Q 043567          634 IPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNI  689 (911)
Q Consensus       634 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l  689 (911)
                      ....++++++|+.|+++++--.+.++.....+++|   ++..+++++..++.+++.
T Consensus       217 ~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGNK  269 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSST
T ss_pred             HHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCCCccCcc
Confidence            66677888888888888873222333333445555   456777887777666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=128.73  Aligned_cols=109  Identities=20%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             CCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCC
Q 043567          155 SLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLF  234 (911)
Q Consensus       155 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  234 (911)
                      +..+|++|||++|+|+.. +..+..+++|++|+|++|+++ .++  .+..+++|++|++++|+++ .++...+..+++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~   90 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   90 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhccccccc-CCCccccccccccc
Confidence            344445555555544422 233344455555555555544 222  2444555555555555554 33333344455555


Q ss_pred             EEeccCCcCCCCCC-cccCCCCCCcEEEccCCcCC
Q 043567          235 VLNLEKNNIEDHLP-NCLNNMTRLKVLDISFNQLS  268 (911)
Q Consensus       235 ~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~  268 (911)
                      +|++++|.++.... ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            55555555443211 23444455555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=5.9e-14  Score=151.26  Aligned_cols=86  Identities=17%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             cccEEEcccCccccc----CCccccCCCCCCEEECCCCcCCccccccc----cc--cCCCCEEeccCCcCccc----CCC
Q 043567          763 YMVGLDLSCNKLTGE----IPSEIGELQEIPVLNMSHNFLSESIPESF----SN--LKMIESLDLSHNRLSGQ----IPP  828 (911)
Q Consensus       763 ~L~~LdLs~N~l~g~----ip~~i~~l~~L~~L~Ls~N~l~g~ip~~l----~~--l~~L~~LdLs~N~l~g~----ip~  828 (911)
                      .|+.||+++|.++..    +...+..++.|++|+|++|.+++.-...+    ..  .+.|+.||+++|+++..    +..
T Consensus       216 ~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence            455566666665422    33445556666666666666655422222    22  24566777777766532    222


Q ss_pred             CCC-CCCCCCeEeccCCcCee
Q 043567          829 KLT-ELNFLSNFNVSYNNLSG  848 (911)
Q Consensus       829 ~l~-~l~~L~~L~ls~N~l~g  848 (911)
                      .+. +.+.|++|++++|.++.
T Consensus       296 ~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         296 VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCCCEEECCCCcCCC
Confidence            221 35566777777777643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.5e-13  Score=118.94  Aligned_cols=103  Identities=25%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             CEEeCCCCCCCcccCcccccccCCCCCCcEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEE
Q 043567          132 QSLDLSNNSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEAL  211 (911)
Q Consensus       132 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  211 (911)
                      |+|||++|.++..      +.+..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ ++  .+.++++|++|
T Consensus         1 R~L~Ls~n~l~~l------~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC------CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC------cccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--ccccccccCeE
Confidence            4566666666543      23455555555555555554 234445555555555555555542 22  24455555555


Q ss_pred             eCCCCCCCCccCcccccCCCCCCEEeccCCcCC
Q 043567          212 DLSSNFINGSLESQGICELKNLFVLNLEKNNIE  244 (911)
Q Consensus       212 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~  244 (911)
                      ++++|+++.......+..+++|++|++++|.++
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            555555542111122444444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=1.1e-13  Score=149.22  Aligned_cols=246  Identities=21%  Similarity=0.218  Sum_probs=145.4

Q ss_pred             CCChhHHHhccCCcEEEcccCccccccc----hhhhcCCCCcEEeccCcccCC---cccHHHHhcccccceeeccCcccc
Q 043567          416 KLPQDMGIILQKLLYMDMSNNHFEGNIA----SSIAEMKELRFLDLSKNNFSG---ELSAALLTSCFSLLWLGLSDNNFY  488 (911)
Q Consensus       416 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~g---~i~~~~~~~~~~L~~L~L~~n~l~  488 (911)
                      .+...+. ....+++|++++|.+.....    ..+...++|+.++++++....   ..+....                 
T Consensus        22 ~l~~~L~-~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----------------   83 (344)
T d2ca6a1          22 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------   83 (344)
T ss_dssp             TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------
T ss_pred             HHHHHHh-hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH-----------------
Confidence            3444443 36788889999888764333    344566888888888775431   1111110                 


Q ss_pred             cccCCCCCCCCCCCEEEccCcccccc----ccccccCCCCCcEEECcCCcCcccCC-------------cCccCcCCCcE
Q 043567          489 GRIFPGYMNLTQLQYLYLENNKFSGK----IEEGLLKSKKLVELRMSSNMLSGHIP-------------HWMGNLSYLEV  551 (911)
Q Consensus       489 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p-------------~~l~~l~~L~~  551 (911)
                       .+...+..+++|+.|+|++|.++..    +...+...++|++|++++|.+.....             ......+.|+.
T Consensus        84 -~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~  162 (344)
T d2ca6a1          84 -LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS  162 (344)
T ss_dssp             -HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             -HHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccce
Confidence             0111122344455555555554432    22233344555555555555431100             00123456667


Q ss_pred             EEccCcccccc----cchhhccCCCCcEEEccCcccccc-----cCccc-ccccccEEEcccCccccc----ccccccCC
Q 043567          552 LLMSKNFFEGN----IPVQLLNHRRLQLFSVSENYLSGF-----MTTSF-NISSVEHLYLQKNSLSGP----IPIALFRS  617 (911)
Q Consensus       552 L~L~~n~l~~~----~p~~l~~~~~L~~L~ls~n~l~~~-----~~~~~-~~~~L~~L~Ls~n~l~~~----~p~~l~~~  617 (911)
                      +++++|.++..    +...+..++.|+.+++++|.+...     +...+ .+++|+.|++++|.++..    +...+..+
T Consensus       163 l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         163 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  242 (344)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             eecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence            77776665422    333445567777777777776532     11222 567788888888887643    44567788


Q ss_pred             CCCCEEeCCCCcccccCch----hhhc--CCCccEEEccCCccccc----CChhhh-cCCCCCeEEcCCCcCCC
Q 043567          618 SNLLTLDLRDNGFSGVIPH----QINE--CSNLRFLLLRGNNLEGQ----IPNQIC-QLTGLGMMDLSHNKFNG  680 (911)
Q Consensus       618 ~~L~~L~Ls~N~l~~~~p~----~l~~--l~~L~~L~L~~N~l~~~----ip~~l~-~l~~L~~L~Ls~N~l~g  680 (911)
                      ++|++|+|++|.+++.-..    .+..  .+.|++|++++|+++..    +...+. +++.|+.|+|++|++..
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9999999999998754222    3333  36799999999998753    334443 57899999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-13  Score=126.82  Aligned_cols=130  Identities=23%  Similarity=0.202  Sum_probs=105.9

Q ss_pred             hhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCC
Q 043567          176 YLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMT  255 (911)
Q Consensus       176 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  255 (911)
                      .+.+..++++|+|++|+|+ .++ ..+..+++|++|||++|.|+ .++  .+..+++|++|++++|.++...+..+..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCcccccccc
Confidence            3567889999999999997 455 45678999999999999998 665  388999999999999999986666677899


Q ss_pred             CCcEEEccCCcCCccC-cccccCCCCCCeeeccCCcCCCccC---hhhhcccccccEEEe
Q 043567          256 RLKVLDISFNQLSGSF-PSIISNLTSLEYLALFDNNFEGTFP---LSSLANHSKLEVLLL  311 (911)
Q Consensus       256 ~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~~l~~l~~L~~L~L  311 (911)
                      +|++|++++|+++... ...+..+++|++|++++|.++ ..|   ...+..+++|+.||-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            9999999999998532 246888999999999999987 334   134677888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.2e-12  Score=117.29  Aligned_cols=102  Identities=26%  Similarity=0.341  Sum_probs=46.6

Q ss_pred             cEEeCCCCCCCccchhhhcCCCCCCEEEcCCcccCCccChhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEecc
Q 043567          160 KILNLGYNYFDDSIFLYLNALTSLTTLILRENNIQGSRTKQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLE  239 (911)
Q Consensus       160 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  239 (911)
                      |+|||++|.++.. + .+.++++|++|++++|+++ .+| ..+..+++|++|++++|.|+ .++  .++++++|++|+++
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp-~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cch-hhhhhhhccccccccccccc-ccC--ccccccccCeEECC
Confidence            3555555555422 1 2445555555555555554 333 23444555555555555554 232  14444455555555


Q ss_pred             CCcCCCCC-CcccCCCCCCcEEEccCCcCC
Q 043567          240 KNNIEDHL-PNCLNNMTRLKVLDISFNQLS  268 (911)
Q Consensus       240 ~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~  268 (911)
                      +|+++... ...+..+++|++|++++|.++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54444321 123444444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=5.4e-13  Score=130.44  Aligned_cols=131  Identities=22%  Similarity=0.308  Sum_probs=86.4

Q ss_pred             cCchhhhcCCCccEEEccCCcccccCChhhhcCCCCCeEEcCCCcCCCCCCcccccccccccCCccccccccchhhhhcc
Q 043567          633 VIPHQINECSNLRFLLLRGNNLEGQIPNQICQLTGLGMMDLSHNKFNGSIPSCFTNITLWSVGNLDRYRLEHLTFVERLD  712 (911)
Q Consensus       633 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~~~~~~~~~~~~~~l~~l~~l~  712 (911)
                      .+|..+..+++|++|+|++|+|+ .++ .+..+++|+.|+|++|+++ .+|..+..                        
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~------------------------   91 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------------   91 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH------------------------
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc------------------------
Confidence            44566777777777777777776 444 4777777777777777765 33321111                        


Q ss_pred             ccccccccccccccCCCCCCCCCCcccccceeeeeeeccceeeccCCcCccccEEEcccCcccccCCccccCCCCCCEEE
Q 043567          713 VNSIGIYYSSMLDMGQLSSEERGPFTFDYLVEVEFVTKNRYEVYNGSNLDYMVGLDLSCNKLTGEIPSEIGELQEIPVLN  792 (911)
Q Consensus       713 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~i~~l~~L~~L~  792 (911)
                                                                      ++.|+.|++++|+++. ++ .+..+++|+.|+
T Consensus        92 ------------------------------------------------~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          92 ------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             ------------------------------------------------HHHCCEEECSEEECCC-HH-HHHHHHHSSEEE
T ss_pred             ------------------------------------------------cccccccccccccccc-cc-cccccccccccc
Confidence                                                            1246667888887773 33 467777888888


Q ss_pred             CCCCcCCcccc-ccccccCCCCEEeccCCcCcccCCCC----------CCCCCCCCeEe
Q 043567          793 MSHNFLSESIP-ESFSNLKMIESLDLSHNRLSGQIPPK----------LTELNFLSNFN  840 (911)
Q Consensus       793 Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L~~L~  840 (911)
                      +++|+++.... ..++.+++|+.|+|++|++....+..          +..+++|++||
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88888864321 45777888888888888877655543          34566777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=1.8e-12  Score=126.75  Aligned_cols=129  Identities=21%  Similarity=0.302  Sum_probs=68.3

Q ss_pred             cccccCCCCCcEEECcCCcCcccCCcCccCcCCCcEEEccCcccccccchhhccCCCCcEEEccCcccccccCccccccc
Q 043567          516 EEGLLKSKKLVELRMSSNMLSGHIPHWMGNLSYLEVLLMSKNFFEGNIPVQLLNHRRLQLFSVSENYLSGFMTTSFNISS  595 (911)
Q Consensus       516 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~  595 (911)
                      +..+..+++|++|++++|+++ .++ .+..+++|+.|++++|.++ .+|....                       .+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~-----------------------~~~~   94 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDA-----------------------VADT   94 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHH-----------------------HHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccc-----------------------cccc
Confidence            344455555555555555554 222 2444455555555555443 2332222                       3345


Q ss_pred             ccEEEcccCcccccccccccCCCCCCEEeCCCCcccccCc-hhhhcCCCccEEEccCCcccccCChh----------hhc
Q 043567          596 VEHLYLQKNSLSGPIPIALFRSSNLLTLDLRDNGFSGVIP-HQINECSNLRFLLLRGNNLEGQIPNQ----------ICQ  664 (911)
Q Consensus       596 L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~----------l~~  664 (911)
                      |++|++++|+++. + ..+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..
T Consensus        95 L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_          95 LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            5555555555552 2 235555666666666666653211 34666777777777777665433321          556


Q ss_pred             CCCCCeEE
Q 043567          665 LTGLGMMD  672 (911)
Q Consensus       665 l~~L~~L~  672 (911)
                      +++|+.||
T Consensus       173 lp~L~~LD  180 (198)
T d1m9la_         173 LPNLKKLD  180 (198)
T ss_dssp             CSSCCEES
T ss_pred             CCCcCEeC
Confidence            77777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.8e-10  Score=105.10  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             EEcccCcccccCCccccCCCCCCEEECCCCc-CCccccccccccCCCCEEeccCCcCcccCCCCCCCCCCCCeEeccCCc
Q 043567          767 LDLSCNKLTGEIPSEIGELQEIPVLNMSHNF-LSESIPESFSNLKMIESLDLSHNRLSGQIPPKLTELNFLSNFNVSYNN  845 (911)
Q Consensus       767 LdLs~N~l~g~ip~~i~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  845 (911)
                      ++.++++++ .+|..+..+++|++|++++|+ ++...+..|.++++|+.|+|++|+|+...|..|..++.|++|+|++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            444444444 344444445555555554332 443334445555555555555555554444445555555555555555


Q ss_pred             Ce
Q 043567          846 LS  847 (911)
Q Consensus       846 l~  847 (911)
                      |+
T Consensus        92 l~   93 (156)
T d2ifga3          92 LE   93 (156)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.1e-09  Score=102.01  Aligned_cols=89  Identities=26%  Similarity=0.295  Sum_probs=40.2

Q ss_pred             hcCCCCCCEEeCCCCC-CCCccCcccccCCCCCCEEeccCCcCCCCCCcccCCCCCCcEEEccCCcCCccCcccccCCCC
Q 043567          202 LSKLKNLEALDLSSNF-INGSLESQGICELKNLFVLNLEKNNIEDHLPNCLNNMTRLKVLDISFNQLSGSFPSIISNLTS  280 (911)
Q Consensus       202 l~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  280 (911)
                      +..+++|++|++++|+ ++ .++..+|.++++|++|++++|+|+.+.|.+|..+++|++|+|++|+++...+..+. ..+
T Consensus        27 l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~  104 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLS  104 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCC
T ss_pred             ccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccc
Confidence            3334444444443332 33 34433444455555555555555444444455555555555555555422222222 224


Q ss_pred             CCeeeccCCcCC
Q 043567          281 LEYLALFDNNFE  292 (911)
Q Consensus       281 L~~L~L~~n~l~  292 (911)
                      |++|+|++|.+.
T Consensus       105 l~~L~L~~Np~~  116 (156)
T d2ifga3         105 LQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCCccc
Confidence            555555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.3e-08  Score=90.90  Aligned_cols=71  Identities=24%  Similarity=0.203  Sum_probs=37.7

Q ss_pred             hhhhcCCCCCCEEEcCCcccCCccC-hhhhcCCCCCCEEeCCCCCCCCccCcccccCCCCCCEEeccCCcCCC
Q 043567          174 FLYLNALTSLTTLILRENNIQGSRT-KQGLSKLKNLEALDLSSNFINGSLESQGICELKNLFVLNLEKNNIED  245 (911)
Q Consensus       174 ~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~  245 (911)
                      +....++++|++|+|++|+++...+ ...+..+++|++|+|++|.|+ .++.-.+....+|++|++++|.+..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            3334456666666666666653221 123455666666666666665 3333223333455666666665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.8e-07  Score=82.31  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             cccCCCCCCEEeCCCCcccccCchhhhcCCCccEEEccCCcccccCCh-------hhhcCCCCCeEE
Q 043567          613 ALFRSSNLLTLDLRDNGFSGVIPHQINECSNLRFLLLRGNNLEGQIPN-------QICQLTGLGMMD  672 (911)
Q Consensus       613 ~l~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-------~l~~l~~L~~L~  672 (911)
                      .+..+++|+.|+|++|+++..-+-.......|+.|++++|++......       .+..+++|+.||
T Consensus        86 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          86 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            344556666666666666533222223334566666666666544332       234566776664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.72  E-value=2e-05  Score=73.14  Aligned_cols=92  Identities=11%  Similarity=0.101  Sum_probs=47.8

Q ss_pred             CCCCCCEEeCCCC-CCCcccCcccccccCCCCCCcEEeCCCCCCCcc----chhhhcCCCCCCEEEcCCcccCCccC---
Q 043567          127 PFEELQSLDLSNN-SFEGVYENQAYDTLGSLKRLKILNLGYNYFDDS----IFLYLNALTSLTTLILRENNIQGSRT---  198 (911)
Q Consensus       127 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~---  198 (911)
                      ..+.|++|+|+++ .++...-..++.++...+.|++|++++|.+...    +...+...+.|++|+|++|.+.+...   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466777777763 354432223334566666777777777766532    22334445566666666665542211   


Q ss_pred             hhhhcCCCCCCEEeCCCCCC
Q 043567          199 KQGLSKLKNLEALDLSSNFI  218 (911)
Q Consensus       199 ~~~l~~l~~L~~L~Ls~n~l  218 (911)
                      ...+...+.|++|++++|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            12234444455555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=3e-05  Score=71.92  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             CCCCCCcEEeCCCC-CCCcc----chhhhcCCCCCCEEEcCCcccCCccC---hhhhcCCCCCCEEeCCCCCCC
Q 043567          154 GSLKRLKILNLGYN-YFDDS----IFLYLNALTSLTTLILRENNIQGSRT---KQGLSKLKNLEALDLSSNFIN  219 (911)
Q Consensus       154 ~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~Ls~n~l~  219 (911)
                      .+.++|++|+|+++ .++..    +...+...+.|++|+|++|.+.....   ...+...+.|++|+|++|.++
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34566777777753 35432    23344555666666666665542110   122334445555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=0.00012  Score=67.70  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=36.3

Q ss_pred             CCCCCCEEeCCC-CCCCcccCcccccccCCCCCCcEEeCCCCCCCccc----hhhhcCCCCCCEEEcCCcccC
Q 043567          127 PFEELQSLDLSN-NSFEGVYENQAYDTLGSLKRLKILNLGYNYFDDSI----FLYLNALTSLTTLILRENNIQ  194 (911)
Q Consensus       127 ~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~  194 (911)
                      ..+.|++|+|++ +.++...-..+..++...++|++|++++|.+....    ...+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            346677777776 34544332233345556666666666666665332    223344555555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.81  E-value=0.00025  Score=65.41  Aligned_cols=62  Identities=24%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             CCCCCCEEeccCCcCCCC----CCcccCCCCCCcEEEc--cCCcCCc----cCcccccCCCCCCeeeccCCc
Q 043567          229 ELKNLFVLNLEKNNIEDH----LPNCLNNMTRLKVLDI--SFNQLSG----SFPSIISNLTSLEYLALFDNN  290 (911)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--s~n~l~~----~~p~~l~~l~~L~~L~L~~n~  290 (911)
                      ..+.++.+++++|.+...    +...+...+.|+.++|  ++|.+..    .+...+...++|+.|+++.+.
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            344455555554444332    2233444555655443  3444443    233344556777777776554