Citrus Sinensis ID: 043588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MERLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL
cHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEcccccccEEEEEcEEEEccccccccccccEEEEEEEEEEEEEEccEEEccccccccccccccccccccEEEEEEccccEEEEcEEEEccccEEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEEcccEEEEccccEEEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEcEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEccccccEEEEEEEEEEcccccccccc
cccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEcccccHHHcccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEcccccccEEEccccccccccccccccc
MERLFSSLFSSLFIILFILSINLAssyattttynvlsfgakgngvtdSTQAFAKAWDAACtstesatinvpkgryllgsvafkgdckssditfridgtlvapadyrvlgqadnwlsfegvsgvsiiggaldakgsslwackasgancpdgattlrftnsnnirINGLLSLNSQMFHIVINGckdvhiegvtviapgnspntdgihVQLSTnvkitnctiktgddcipigpgtknlwiervtcgpghgisiGSLAKDLIEEGVQNVTVFKTVFTgttngfrikswarpsngfvqgVSFIDAIMRNVqfpividqnycphnlncpgqvsgvkindityqdirgtsatpiaikfdcstkypcqgiklqNINLRHLKQVAQSSCNNVIGKALglvqpnscl
MERLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTStesatinvpkgrYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNctiktgddcipIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNgfrikswarpsnGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKAlglvqpnscl
MERlfsslfsslfiilfilsiNLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQnvtvfktvftgttngfRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL
****FSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLV******
*******LFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL
MERLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL
*ERLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.974 0.984 0.594 1e-132
O22818405 Probable polygalacturonas no no 0.934 0.916 0.518 1e-107
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.879 0.925 0.445 9e-78
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.909 0.822 0.425 6e-77
P35336467 Polygalacturonase OS=Acti N/A no 0.906 0.770 0.428 1e-75
Q39766407 Polygalacturonase OS=Goss N/A no 0.962 0.938 0.399 2e-73
Q39786407 Polygalacturonase OS=Goss N/A no 0.959 0.936 0.400 2e-73
O23147431 Polygalacturonase ADPG1 O no no 0.921 0.849 0.420 1e-72
P48978460 Polygalacturonase OS=Malu N/A no 0.954 0.823 0.405 2e-71
P05117457 Polygalacturonase-2 OS=So N/A no 0.876 0.761 0.412 8e-70
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/392 (59%), Positives = 286/392 (72%), Gaps = 5/392 (1%)

Query: 7   SLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESA 66
           SLFS   I +F+++    S+ A+  TYNV S GAK +G TDST+AF  AW  AC S    
Sbjct: 6   SLFSLSLIFVFMIN----SAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPG 61

Query: 67  TINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 126
            I VP G + L  V F G CK++ ITFRI GTLVAP+DYRV+G A NW+ F  V+GV+I 
Sbjct: 62  VIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTIS 121

Query: 127 GGALDAKGSSLWACKA-SGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDV 185
           GG LD +G++LWACKA  G +CP GATTL F++SNNI ++GL SLNSQMFHIVIN  ++V
Sbjct: 122 GGILDGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNV 181

Query: 186 HIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG 245
            ++GV V   GNSPNTDGIHVQ+S+ V I N  I TGDDC+ IGPGT NLWIE V CGPG
Sbjct: 182 QMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPG 241

Query: 246 HGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNV 305
           HGISIGSL K+  E GVQNVTV    F+GT NG RIKSW RPS GF + + F  A M NV
Sbjct: 242 HGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNV 301

Query: 306 QFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQ 365
           + PIVIDQ+YCP N  CPGQVSGV+I+D+TY+DI GTSAT +A+KFDCS K+PC+ IKL+
Sbjct: 302 ENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLE 361

Query: 366 NINLRHLKQVAQSSCNNVIGKALGLVQPNSCL 397
           ++ L +  Q A+SSC++  G   G+VQP SCL
Sbjct: 362 DVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
224109162397 predicted protein [Populus trichocarpa] 0.997 0.997 0.708 1e-161
255566763387 Polygalacturonase precursor, putative [R 0.974 1.0 0.720 1e-161
255576396393 Polygalacturonase precursor, putative [R 0.979 0.989 0.635 1e-139
356577135399 PREDICTED: LOW QUALITY PROTEIN: polygala 0.977 0.972 0.629 1e-139
296083401390 unnamed protein product [Vitis vinifera] 0.954 0.971 0.665 1e-139
147858963376 hypothetical protein VITISV_033513 [Viti 0.931 0.984 0.660 1e-138
255576394393 Polygalacturonase precursor, putative [R 0.982 0.992 0.617 1e-137
356519796398 PREDICTED: polygalacturonase-like [Glyci 0.974 0.972 0.626 1e-137
116830987398 unknown [Arabidopsis thaliana] 0.989 0.987 0.595 1e-137
15218742397 pectin lyase-like protein [Arabidopsis t 0.989 0.989 0.595 1e-136
>gi|224109162|ref|XP_002315106.1| predicted protein [Populus trichocarpa] gi|222864146|gb|EEF01277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/398 (70%), Positives = 323/398 (81%), Gaps = 2/398 (0%)

Query: 1   MERLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAAC 60
           ME L   L S LF I F++S+N  +  +  T YNV ++GAK NG TDSTQAF  AW AAC
Sbjct: 1   MEMLMLCLHSILFFI-FLVSLNNINISSAETIYNVQTYGAKPNGKTDSTQAFLDAWAAAC 59

Query: 61  TSTESATINVPKGRYLLGSVAFKG-DCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEG 119
            ST+   I +P+GRYLLGSVAF G +CKS DIT RIDGTL+AP DYR+LG A NWLSFE 
Sbjct: 60  GSTDPTIIYIPEGRYLLGSVAFTGGNCKSPDITVRIDGTLIAPEDYRILGLASNWLSFES 119

Query: 120 VSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVI 179
           VSGVSI+GGALDAKGS LW CK+ G+NCP GATTL F NSNNI+INGLLSLNSQMFHIVI
Sbjct: 120 VSGVSIVGGALDAKGSPLWDCKSKGSNCPAGATTLSFVNSNNIKINGLLSLNSQMFHIVI 179

Query: 180 NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIER 239
           NGC++V ++GV VIA G+SPNTDGIHVQLST+V I N +IKTGDDCI IGPGTKNLWIER
Sbjct: 180 NGCQNVQVQGVRVIAAGDSPNTDGIHVQLSTDVVIMNSSIKTGDDCISIGPGTKNLWIER 239

Query: 240 VTCGPGHGISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFID 299
           V CGPGHGISIGSLAK + E GVQNVTV  T+FTGTTNGFRIKSWAR S GF Q + FI 
Sbjct: 240 VRCGPGHGISIGSLAKTMDEAGVQNVTVKSTIFTGTTNGFRIKSWARHSTGFAQAIRFIG 299

Query: 300 AIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPC 359
           A M NVQ PI+IDQNYCPHNLNCP +VSG++I+D+ YQ IRGTSATP+AIKFDCS KYPC
Sbjct: 300 ATMINVQNPIIIDQNYCPHNLNCPNEVSGIQISDVIYQGIRGTSATPVAIKFDCSFKYPC 359

Query: 360 QGIKLQNINLRHLKQVAQSSCNNVIGKALGLVQPNSCL 397
           +GI LQN+NL +L + AQS+C N IGK  G VQP++CL
Sbjct: 360 KGITLQNVNLTYLNKEAQSTCTNAIGKISGQVQPDNCL 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566763|ref|XP_002524365.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223536326|gb|EEF37976.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255576396|ref|XP_002529090.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531441|gb|EEF33274.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356577135|ref|XP_003556683.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|296083401|emb|CBI23356.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858963|emb|CAN78679.1| hypothetical protein VITISV_033513 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576394|ref|XP_002529089.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531440|gb|EEF33273.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356519796|ref|XP_003528555.1| PREDICTED: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|116830987|gb|ABK28449.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15218742|ref|NP_176735.1| pectin lyase-like protein [Arabidopsis thaliana] gi|2190556|gb|AAB60920.1| F5I14.10 [Arabidopsis thaliana] gi|91806027|gb|ABE65742.1| polygalacturonase/pectinase [Arabidopsis thaliana] gi|332196276|gb|AEE34397.1| pectin lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.924 0.924 0.598 9.2e-123
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.944 0.966 0.558 3.8e-117
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.931 0.963 0.563 5.6e-116
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.934 0.941 0.517 5.7e-107
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.934 0.941 0.514 9.5e-105
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.942 0.954 0.509 2.6e-102
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.939 0.946 0.472 1.8e-96
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.942 0.923 0.498 2.9e-96
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.876 0.923 0.430 1.2e-72
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.899 0.813 0.405 3.3e-70
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 221/369 (59%), Positives = 278/369 (75%)

Query:    31 TTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLL-GSVAFKGD-CKS 88
             T+ NVLSFGA  NG+ +S +AF+ AWDAAC   +S  I VPKGRYL+ G V F+G+ CKS
Sbjct:    29 TSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVIYVPKGRYLVSGEVRFEGESCKS 88

Query:    89 SDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCP 148
              +IT RIDGTL+ P DY +LG+ +NW SF GV  V+++GG+ DAKGS+LW+CKA+G NCP
Sbjct:    89 REITLRIDGTLIGPQDYSLLGKKENWFSFSGVHNVTVLGGSFDAKGSTLWSCKANGYNCP 148

Query:   149 DGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQL 208
             +GATTLRF +SNN++I G+LSLNSQ+FHI IN C+++ IE V +IAP  SPNTDGIH+QL
Sbjct:   149 EGATTLRFMDSNNVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQL 208

Query:   209 STNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQXXXXX 268
             ST++++ N +IKTGDDCI IGPGTKNL ++ +TCGPGHGISIGSLAK + E+GV+     
Sbjct:   209 STDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLAKSIEEQGVENVTVK 268

Query:   269 XXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSG 328
                        RIKSW R SNGFV+ V F+ AIM NV +PI+IDQNYCP + +CP Q SG
Sbjct:   269 NAVFVRTDNGLRIKSWPRHSNGFVERVRFLGAIMVNVSYPILIDQNYCPGDSSCPSQESG 328

Query:   329 VKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLKQVAQSSCNNVIGKAL 388
             +KIND+ Y  I GTSAT IAIK DCS K PC GI++Q INL    + A++SC NV GK L
Sbjct:   329 IKINDVIYSGIMGTSATEIAIKMDCSEKVPCTGIRMQAINLTSYGEAAKTSCTNVSGKQL 388

Query:   389 GLVQPNSCL 397
             GLV P+ CL
Sbjct:   389 GLVTPSGCL 397
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.59430.97480.9847N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X1589
hypothetical protein (397 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-146
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-107
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 2e-90
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 3e-90
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 6e-90
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-81
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 8e-81
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-29
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 2e-07
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  420 bits (1081), Expect = e-146
 Identities = 205/386 (53%), Positives = 274/386 (70%), Gaps = 2/386 (0%)

Query: 13  FIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPK 72
           F +LF L   +  S + +  +NV+SFGAK +GVTDST AF KAW  AC S  SAT+ VP 
Sbjct: 8   FPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPT 67

Query: 73  GRYLLGSVAFKGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDA 132
           G +LL  + F G CKS  ITF++ GT+VAP DYR  G +  W+ F  V+  S++GG  DA
Sbjct: 68  GTFLLKVITFGGPCKSK-ITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDA 126

Query: 133 KGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV 192
           + +  W+C+ SG NCP G  ++ F ++ ++ I+G+ S+NSQ+ H+ +NGC +V +  V +
Sbjct: 127 RANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKL 186

Query: 193 IAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGS 252
           +APGNSPNTDG HVQ ST V  T  T++TGDDC+ IGPGT+N  I ++ CGPGHG+SIGS
Sbjct: 187 VAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGS 246

Query: 253 LAKDLIEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVID 312
           LAK+L E+GV+NVTV  +VFTG+ NG RIKSWARPS GFV+ V F D +M+NV+ PI+ID
Sbjct: 247 LAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIID 306

Query: 313 QNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHL 372
           QNYCP +  CP + SGVKI+ +TY++I+GTSAT  A+K  CS   PC GI LQ+I L + 
Sbjct: 307 QNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYN 366

Query: 373 KQV-AQSSCNNVIGKALGLVQPNSCL 397
           K   A S C N +GK+LG++QP SCL
Sbjct: 367 KGTPATSFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
PLN02793443 Probable polygalacturonase 99.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.85
PLN03003456 Probable polygalacturonase At3g15720 99.84
PLN02218431 polygalacturonase ADPG 99.84
PLN02155394 polygalacturonase 99.83
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.83
PLN03010409 polygalacturonase 99.82
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.82
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.76
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.41
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.15
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.86
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.83
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.77
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.75
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.69
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.62
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.61
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.58
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.55
PLN02480343 Probable pectinesterase 98.55
smart00656190 Amb_all Amb_all domain. 98.53
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.52
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.52
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.5
PLN02773317 pectinesterase 98.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.39
PLN02176340 putative pectinesterase 98.37
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.34
PLN02497331 probable pectinesterase 98.33
PLN02634359 probable pectinesterase 98.28
PLN02665366 pectinesterase family protein 98.28
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.16
smart00656190 Amb_all Amb_all domain. 98.15
PRK10531422 acyl-CoA thioesterase; Provisional 98.11
PLN02170529 probable pectinesterase/pectinesterase inhibitor 98.07
PLN02484587 probable pectinesterase/pectinesterase inhibitor 98.05
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 98.03
PLN02682369 pectinesterase family protein 98.01
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.99
PLN02916502 pectinesterase family protein 97.96
PLN02671359 pectinesterase 97.95
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.93
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.92
PLN02432293 putative pectinesterase 97.87
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.86
PLN02304379 probable pectinesterase 97.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.84
PLN02301548 pectinesterase/pectinesterase inhibitor 97.84
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.84
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.8
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.79
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.79
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.76
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.72
PLN02197588 pectinesterase 97.64
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.63
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.62
PLN02314586 pectinesterase 97.58
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.58
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.57
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.55
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.22
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.16
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.16
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.07
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.97
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.71
PLN02480343 Probable pectinesterase 95.28
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 95.0
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.75
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.04
PRK10531422 acyl-CoA thioesterase; Provisional 93.95
PLN02773317 pectinesterase 93.89
PLN02671359 pectinesterase 93.82
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.8
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.49
PLN02176340 putative pectinesterase 93.34
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.07
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.07
PLN02197588 pectinesterase 91.4
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 90.26
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 90.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 88.99
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 88.69
PLN02916502 pectinesterase family protein 87.86
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.73
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 87.56
PLN02506537 putative pectinesterase/pectinesterase inhibitor 87.24
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 87.14
PLN02201520 probable pectinesterase/pectinesterase inhibitor 86.99
PLN02314586 pectinesterase 86.79
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 86.75
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 86.39
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 86.31
PLN02301548 pectinesterase/pectinesterase inhibitor 86.15
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 85.88
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 85.72
PLN02416541 probable pectinesterase/pectinesterase inhibitor 85.48
PLN02488509 probable pectinesterase/pectinesterase inhibitor 85.21
PLN02484587 probable pectinesterase/pectinesterase inhibitor 84.85
PLN02682369 pectinesterase family protein 84.72
PLN02432293 putative pectinesterase 84.56
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 83.65
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 82.63
PLN02313587 Pectinesterase/pectinesterase inhibitor 82.29
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 82.21
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-78  Score=585.35  Aligned_cols=378  Identities=53%  Similarity=0.986  Sum_probs=345.3

Q ss_pred             HHHHHhccccCceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEccE
Q 043588           19 LSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGT   98 (397)
Q Consensus        19 ~~~~~~~~~~~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~   98 (397)
                      ++.+...+..++.+++|+||||+|||.+|||+|||+||++||++++|++|+||+|+|+++++.|+++||| +++|+++|+
T Consensus        14 ~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~   92 (394)
T PLN02155         14 LLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGT   92 (394)
T ss_pred             HHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeE
Confidence            3344556667778999999999999999999999999987789999999999999999999999998999 999999999


Q ss_pred             EEeeccccccCCCcceEEEecccceEEEceeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEE
Q 043588           99 LVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIV  178 (397)
Q Consensus        99 l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~  178 (397)
                      |+++.++..|.....|+.+.+.+|+.|.||+|||+|+.||...+.+...+.+|++|.|.+|+|++|++++++|+|.|+++
T Consensus        93 l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~  172 (394)
T PLN02155         93 VVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMT  172 (394)
T ss_pred             EECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEE
Confidence            99988887776556799999999999999999999999998655544555678999999999999999999999999999


Q ss_pred             EeceecEEEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCC
Q 043588          179 INGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLI  258 (397)
Q Consensus       179 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~  258 (397)
                      +..|+|++|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|++..
T Consensus       173 ~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~  252 (394)
T PLN02155        173 LNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELN  252 (394)
T ss_pred             EECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCC
Confidence            99999999999999998888999999999999999999999999999999999999999999999999999999987765


Q ss_pred             cCCEEEEEEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEe
Q 043588          259 EEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQD  338 (397)
Q Consensus       259 ~~~v~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~n  338 (397)
                      .+.++||+|+||+|.++.+|++||+|.+.++|.|+||+|+|++|+++.+||.|++.|++....|+...+.+.|+||+|+|
T Consensus       253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~n  332 (394)
T PLN02155        253 EDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKN  332 (394)
T ss_pred             CCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEe
Confidence            68899999999999999999999998654689999999999999999999999999987555555555678999999999


Q ss_pred             EEEeeCCCceEEEeecCCCceecEEEEeEEEEeCC-CccceeeecccccccCeecCCCCC
Q 043588          339 IRGTSATPIAIKFDCSTKYPCQGIKLQNINLRHLK-QVAQSSCNNVIGKALGLVQPNSCL  397 (397)
Q Consensus       339 i~~~~~~~~~~~i~~~~~~~i~ni~~~ni~i~~~~-~~~~~~c~nv~~~~~~~~~~~~~~  397 (397)
                      |+++.....++.+.|++..||+||+|+||++..++ .+..++|.|+++.+.++++|.|||
T Consensus       333 i~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        333 IQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             eEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence            99998766789999999999999999999999876 446899999999999988999997

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-14
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-12
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 1e-11
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 4e-09
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 2e-08
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-08
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 5e-07
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 9e-07
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 2e-06
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 146/350 (41%), Gaps = 27/350 (7%)
Query: 24  ASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGS-VAF 82
           AS+   T T N+LS+GA  +  TD   A   AW AAC S     + +P G Y L + V  
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKS--GGLVYIPSGNYALNTWVTL 68
Query: 83  KGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKA 142
            G    S    ++DG +     YR    + N ++    +   +      +KG+       
Sbjct: 69  TG---GSATAIQLDGII-----YRTGTASGNMIAVTDTTDFELFSST--SKGAVQGFGYV 118
Query: 143 SGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTD 202
             A    GA  LR T+  +  ++ ++ +++  FH  ++ C D  +  +  I  GN    D
Sbjct: 119 YHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM-AIRGGNEGGLD 177
Query: 203 GIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGV 262
           GI V   +N+ + +  +   D+C+ +     N+ +E + C    G ++GSL  D     V
Sbjct: 178 GIDV-WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDV 233
Query: 263 QXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNC 322
                             IKS     +G V  V   + I     + + ID  Y       
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDID-GYWSSMTAV 290
Query: 323 PGQVSGVKINDITYQDIRGTS---ATPIAIKFDCSTKYPCQGIKLQNINL 369
            G   GV++N+IT ++ +GT    AT   I+  CS   PC  + L++I +
Sbjct: 291 AGD--GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-120
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-109
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-107
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 8e-99
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 7e-97
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-95
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 2e-93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-91
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 7e-89
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-88
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-36
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-32
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-21
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 8e-17
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-14
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 9e-10
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 9e-05
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 3e-09
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  353 bits (907), Expect = e-120
 Identities = 86/383 (22%), Positives = 151/383 (39%), Gaps = 36/383 (9%)

Query: 24  ASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGS-VAF 82
           AS+   T T N+LS+GA  +  TD   A   AW AAC S     + +P G Y L + V  
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKS--GGLVYIPSGNYALNTWVTL 68

Query: 83  KGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG----GALDAKGSSLW 138
            G         ++DG +           + N ++    +   +      GA+   G    
Sbjct: 69  TGGSA---TAIQLDGIIYRTGTA-----SGNMIAVTDTTDFELFSSTSKGAVQGFGYVYH 120

Query: 139 ACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNS 198
           A          GA  LR T+  +  ++ ++ +++  FH  ++ C D  +  + +    N 
Sbjct: 121 A------EGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NE 173

Query: 199 PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLI 258
              DGI V   +N+ + +  +   D+C+ +     N+ +E + C    G ++GSL  D  
Sbjct: 174 GGLDGIDVW-GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD-- 230

Query: 259 EEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPH 318
              V ++         +   + IKS     +G V  V   + I     + + ID  +   
Sbjct: 231 -TDVTDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM 287

Query: 319 NLNCPGQVSGVKINDITYQDIRGTS---ATPIAIKFDCSTKYPCQGIKLQNINLRHL-KQ 374
                    GV++N+IT ++ +GT    AT   I+  CS   PC  + L++I +      
Sbjct: 288 TAVAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS 344

Query: 375 VAQSSCNNVIGKALGLVQPNSCL 397
                C +  G    L   +S  
Sbjct: 345 SELYLCRSAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.93
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.82
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.81
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.79
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.78
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.66
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.5
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.47
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.43
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.41
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.38
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.38
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.37
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.31
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.91
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.76
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.71
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.71
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.67
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.64
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.62
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.61
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.6
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.59
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.57
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.57
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.54
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.53
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.5
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.36
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.35
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.33
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.25
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.24
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.24
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.19
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.17
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.05
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.94
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.94
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.87
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.73
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.71
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.6
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.16
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.59
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.54
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.42
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.4
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.2
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.87
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.78
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.55
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.47
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.91
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 86.57
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 85.85
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 84.71
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=8.6e-64  Score=494.03  Aligned_cols=338  Identities=23%  Similarity=0.388  Sum_probs=298.5

Q ss_pred             hccccCceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEeeceeeeccCCCcceEEEEccEEEeec
Q 043588           24 ASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGSVAFKGDCKSSDITFRIDGTLVAPA  103 (397)
Q Consensus        24 ~~~~~~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~  103 (397)
                      ..+...+..++|+||||+|||.+|||+|||+||++ |++.+|++|+||+|+|+++++.|+    | +++|+++|+|+++.
T Consensus        19 ~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l~----s-~v~l~l~gtL~~s~   92 (448)
T 3jur_A           19 REPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHLK----S-NIELHVKGTIKFIP   92 (448)
T ss_dssp             CCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEECC----T-TEEEEESSEEEECC
T ss_pred             cCCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEeC----C-CcEEEEEEEEEecC
Confidence            34445677999999999999999999999999975 677789999999999999999997    7 99999999999999


Q ss_pred             ccccc-CCC------------cceEEEecccceEEEc-eeeeCCC--CcccccccC------------------------
Q 043588          104 DYRVL-GQA------------DNWLSFEGVSGVSIIG-GALDAKG--SSLWACKAS------------------------  143 (397)
Q Consensus       104 ~~~~~-~~~------------~~~i~~~~~~ni~I~G-G~idg~g--~~~w~~~~~------------------------  143 (397)
                      ++.+| +..            .+||.+.+++||+|.| |+|||+|  +.||.....                        
T Consensus        93 d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  172 (448)
T 3jur_A           93 DPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAE  172 (448)
T ss_dssp             CGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHH
T ss_pred             CHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhc
Confidence            99888 421            3589999999999999 9999999  889974321                        


Q ss_pred             ----------CCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecEEEEeEEEECCCCCCCCCceeeecceeEE
Q 043588          144 ----------GANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNVK  213 (397)
Q Consensus       144 ----------~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~  213 (397)
                                +.....||++|.|.+|+|++|+|++++++|.|++++..|+|++|++++|.++  ++|+|||++.+|+||+
T Consensus       173 ~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~  250 (448)
T 3jur_A          173 RGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYML  250 (448)
T ss_dssp             HTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEE
T ss_pred             ccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEE
Confidence                      0123578999999999999999999999999999999999999999999986  5799999999999999


Q ss_pred             EEecEEecCCceEEeCCC-----------CeeEEEEeeEE--ecCc-eeEEeeecccCCcCCEEEEEEEeeEEeCCcceE
Q 043588          214 ITNCTIKTGDDCIPIGPG-----------TKNLWIERVTC--GPGH-GISIGSLAKDLIEEGVQNVTVFKTVFTGTTNGF  279 (397)
Q Consensus       214 I~n~~i~~~dD~i~i~~~-----------s~nv~i~n~~~--~~~~-gi~igs~~~~~~~~~v~nI~i~n~~~~~~~~gi  279 (397)
                      |+||+|.++||||+++++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||+|.++.+|+
T Consensus       251 I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~Gi  326 (448)
T 3jur_A          251 IEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERAL  326 (448)
T ss_dssp             EESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEEE
T ss_pred             EEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccceE
Confidence            999999999999999997           89999999999  5566 7999998    3578999999999999999999


Q ss_pred             EEEeecCCCCceEEceEEEEEEEecCcccE-EEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeCCCceEEEeecCCCc
Q 043588          280 RIKSWARPSNGFVQGVSFIDAIMRNVQFPI-VIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSATPIAIKFDCSTKYP  358 (397)
Q Consensus       280 ~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~~~~~~~i~~~~~~~  358 (397)
                      +||++.+ ++|.++||+|+|++|.++.+++ .|++.|+..   +  ....+.|+||+|+||+++. ...++.+.|.++.|
T Consensus       327 rIKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~---~--~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p  399 (448)
T 3jur_A          327 RLKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE---E--GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDY  399 (448)
T ss_dssp             EEECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC---C--CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBC
T ss_pred             EEEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC---C--CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCC
Confidence            9999977 7799999999999999999988 999998753   1  1234689999999999988 56789999999999


Q ss_pred             eecEEEEeEEEEeCCCccceeeec
Q 043588          359 CQGIKLQNINLRHLKQVAQSSCNN  382 (397)
Q Consensus       359 i~ni~~~ni~i~~~~~~~~~~c~n  382 (397)
                      |+||+|+||+++....  ...|.+
T Consensus       400 ~~~I~~~nv~i~~~~~--~~~~~~  421 (448)
T 3jur_A          400 VKDILISDTIIEGAKI--SVLLEF  421 (448)
T ss_dssp             EEEEEEEEEEEESCSE--EEEEEE
T ss_pred             EeeEEEEEEEEEcccc--ceeEec
Confidence            9999999999995432  355665
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-84
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-74
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-72
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-65
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-60
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-59
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 4e-56
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 7e-54
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-04
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  261 bits (669), Expect = 2e-84
 Identities = 87/382 (22%), Positives = 151/382 (39%), Gaps = 36/382 (9%)

Query: 24  ASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLGS-VAF 82
           AS+   T T N+LS+GA  +  TD   A   AW AAC S     + +P G Y L + V  
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKS--GGLVYIPSGNYALNTWVTL 68

Query: 83  KGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSII----GGALDAKGSSLW 138
            G         ++DG +           + N ++    +   +      GA+   G    
Sbjct: 69  TGGSA---TAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYH 120

Query: 139 ACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNS 198
                 A    GA  LR T+  +  ++ ++ +++  FH  ++ C D  +  + +    N 
Sbjct: 121 ------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NE 173

Query: 199 PNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLI 258
              DGI V  S N+ + +  +   D+C+ +     N+ +E + C    G ++GSL  D  
Sbjct: 174 GGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD-- 230

Query: 259 EEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPH 318
              V ++         +   + IKS     +G V  V   + I     + + ID  +   
Sbjct: 231 -TDVTDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM 287

Query: 319 NLNCPGQVSGVKINDITYQDIRGTS---ATPIAIKFDCSTKYPCQGIKLQNINLRHLK-Q 374
                    GV++N+IT ++ +GT    AT   I+  CS   PC  + L++I +      
Sbjct: 288 TAVAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS 344

Query: 375 VAQSSCNNVIGKALGLVQPNSC 396
                C +  G    L   +S 
Sbjct: 345 SELYLCRSAYGSGYCLKDSSSH 366
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.86
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.86
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.84
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.79
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.72
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.69
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.62
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.62
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.76
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.68
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.59
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.59
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.01
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.99
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.99
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.97
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.94
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.91
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.75
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.66
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.66
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.62
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.57
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.15
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.1
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.7
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.57
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 94.7
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.9
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 86.99
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=3.6e-60  Score=464.26  Aligned_cols=342  Identities=24%  Similarity=0.398  Sum_probs=292.0

Q ss_pred             cCceeEEeeccCccCCCCcchHHHHHHHHHHhhccCCCcEEEEcCceEEee-ceeeeccCCCcceEEEEccEEEeecccc
Q 043588           28 ATTTTYNVLSFGAKGNGVTDSTQAFAKAWDAACTSTESATINVPKGRYLLG-SVAFKGDCKSSDITFRIDGTLVAPADYR  106 (397)
Q Consensus        28 ~~~~~~~v~d~GA~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-~~~l~~~~~s~~~~l~~~G~l~~~~~~~  106 (397)
                      ++.+++||+||||+|||++|||+|||+||+ ||+  +|++|+||+|+|++. ++.|+++  + ++.|+++|+|++.....
T Consensus        16 ~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~-~~~l~~~G~i~~~~~~~   89 (422)
T d1rmga_          16 GATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--S-ATAIQLDGIIYRTGTAS   89 (422)
T ss_dssp             HHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--E-EEEEEECSEEEECCCCS
T ss_pred             CCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--C-ceEEEEeEEEEeccCCc
Confidence            346799999999999999999999999996 565  478999999999765 5888875  5 89999999998865544


Q ss_pred             ccCCCcceEEEecccceEEEc-eeeeCCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeEEecCcceEEEEeceecE
Q 043588          107 VLGQADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGANCPDGATTLRFTNSNNIRINGLLSLNSQMFHIVINGCKDV  185 (397)
Q Consensus       107 ~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv  185 (397)
                      .+.  ..+....+.+.+.+.| |+|||+|+.||..      ...+|+++.+.+|+|++|+++++++++.|++.+..|+++
T Consensus        90 ~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~------~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v  161 (422)
T d1rmga_          90 GNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHAE------GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDG  161 (422)
T ss_dssp             SEE--EEEEEEEEEEEECSSSCCEEECCTHHHHTT------TCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEE
T ss_pred             cCE--EEeccCccEEEEEeecceEEecCcceecCC------CCCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccE
Confidence            332  1223334445556667 9999999999953      245789999999999999999999999999999999999


Q ss_pred             EEEeEEEECCCCCCCCCceeeecceeEEEEecEEecCCceEEeCCCCeeEEEEeeEEecCceeEEeeecccCCcCCEEEE
Q 043588          186 HIEGVTVIAPGNSPNTDGIHVQLSTNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLIEEGVQNV  265 (397)
Q Consensus       186 ~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~nI  265 (397)
                      +|+|++|..+ +.+|+|||++.+ +||+|+||++.++||||+++++++||+|+|++|..+||++||+++.   ...++||
T Consensus       162 ~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV  236 (422)
T d1rmga_         162 EVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDI  236 (422)
T ss_dssp             EEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEE
T ss_pred             EEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEE
Confidence            9999999985 457999999976 5899999999999999999999999999999999999999999864   3469999


Q ss_pred             EEEeeEEeCCcceEEEEeecCCCCceEEceEEEEEEEecCcccEEEeeecCCCCCCCCCCccceEEEeEEEEeEEEeeC-
Q 043588          266 TVFKTVFTGTTNGFRIKSWARPSNGFVQGVSFIDAIMRNVQFPIVIDQNYCPHNLNCPGQVSGVKINDITYQDIRGTSA-  344 (397)
Q Consensus       266 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~ni~~~~~-  344 (397)
                      +|+||++.++.+|++++++.  +.|.|+||+|+|++++++.+||.|++.|++....   .....+|+||+|+||+++.. 
T Consensus       237 ~v~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT~~~  311 (422)
T d1rmga_         237 VYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGTEAN  311 (422)
T ss_dssp             EEEEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEEESC
T ss_pred             EEEeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEEecC
Confidence            99999999999999999874  4689999999999999999999999999864332   22456899999999999874 


Q ss_pred             --CCceEEEeecCCCceecEEEEeEEEEeCC-CccceeeecccccccCeecC
Q 043588          345 --TPIAIKFDCSTKYPCQGIKLQNINLRHLK-QVAQSSCNNVIGKALGLVQP  393 (397)
Q Consensus       345 --~~~~~~i~~~~~~~i~ni~~~ni~i~~~~-~~~~~~c~nv~~~~~~~~~~  393 (397)
                        ...++.+.|++..||+||+|+||+|..++ +.+.+.|+|+++..+-|...
T Consensus       312 ~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~~l~~~  363 (422)
T d1rmga_         312 GATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYCLKDS  363 (422)
T ss_dssp             TTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEESTTCBCC
T ss_pred             CcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEEeecCC
Confidence              35689999999999999999999999877 55668999999987644433
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure