Citrus Sinensis ID: 043601

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49

MEKSGYGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQL

ccccccccccEEEcccccccccccccccHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHcccEEEEEcccHHHHHHcccccEEEcccccEEcccccccccccccHHHHHHHccccccccccccccccEEEEEccccccccccHHHHccHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccEEEcccccHHHHHHHcccccccccccccEEEcccccEEEEEcccccccccccccEEEEEEcccccccEEEEEEccccEEEEccccHHHHHcccHHHHHHHHHHccccccEEEcccccccccccEEEEEEEcccccccHHHHHHHHHHcccc

ccccccccccEcccccccccccccccccHHHHHHHHHHHcccccEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccEEEEEcHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHccccccccccccccccEEEEEEcccccccccEEEEEcccEEEEHEHcccccccccccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEccccHHHHHHHHHccccccHccHHHHHHEHcccccccHHHHHHHHHHccccEEEEcccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccEEEEEEccEEEcccccEEccccEEEEEcccHHHEEEcccEEEHHHHHHccHHHHHEEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHHccc

meksgygrdgiyrslrpalvlpqdpnlsmvhFLFRnsasygsksalidadsgesltfsQFKSIVIKVSHgfrhlgvtkhdvvlifapnsiqfpICLLGVIAIggiattanpvyTVSELskqvkdsspklvvtVPELWErvkdfnipavllgsnhivsprglrsssnivyFDELIelsgnasnfpdvsvkqtDTAALLYssgttgvgkgaILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVkkfdlsslkgigsgaaPLRKELVEECsknlptvtvfqgygmtetcgvvtvenpllgvqnsgstgtLVAGVEAQIVCvdtlkplppnqvgelwvrgpilmpgdlgyfdehgQLFIVDRIKELIKCngfqvelegvlvshpeildavvipfpdpeagevpiayvvrspnssltkeDVQKFVANDSQL

meksgygrdgiyrslrpalvlpqDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSElskqvkdsspkLVVTVPELWERVKDfnipavllgsnhivsprglrSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSpnssltkedvqkfvandsql

*********GIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQV***SPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV**********************

******G***IYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQL

MEKSGYGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSE**********KLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQL

*****YGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDS**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		488	2.2.26 [Sep-21-2011]
Q9M0X9		544	4-coumarate--CoA ligase-l	yes	no	0.983	0.882	0.637	0.0
Q0DV32		552	4-coumarate--CoA ligase-l	yes	no	0.977	0.864	0.489	1e-129
Q84P21		546	4-coumarate--CoA ligase-l	no	no	0.963	0.860	0.373	4e-89
Q84P25		565	4-coumarate--CoA ligase-l	no	no	0.975	0.842	0.382	2e-88
P0C5B6		550	4-coumarate--CoA ligase-l	no	no	0.961	0.852	0.389	4e-87
Q84P26		550	4-coumarate--CoA ligase-l	no	no	0.954	0.847	0.396	5e-87
Q3E6Y4		552	4-coumarate--CoA ligase-l	no	no	0.971	0.858	0.378	9e-87
Q84P24		566	4-coumarate--CoA ligase-l	no	no	0.961	0.828	0.380	1e-85
Q9S725		556	4-coumarate--CoA ligase 2	no	no	0.948	0.832	0.372	2e-82
O24145		547	4-coumarate--CoA ligase 1	N/A	no	0.938	0.837	0.363	2e-82

>sp\|Q9M0X9\|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1	Back alignment and function desciption

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/508 (63%), Positives = 398/508 (78%), Gaps = 28/508 (5%)

Query: 1   MEKSGYGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQF 60
           MEKSGYGRDGIYRSLRP LVLP+DPN S+V FLFRNS+SY SK A+ D+D+G+SLTFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120
           KS V +++HGF  LG+ K+DVVLIFAPNS QFP+C L V AIGG+ TTANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVS-PRGLRSSSNIVYFDELIELSGN 179
           Q+KDS+PK++++V +L++++K F++P VLLGS   V  P G  S+S I+ FD ++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPG--SNSKILSFDNVMELSEP 178

Query: 180 ASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLC 239
            S +P V +KQ+DTAALLYSSGTTG  KG  LTH NFIA+SLM  MDQ+L G    V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 240 VLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKN 299
            LPMFHVFGL+ + Y+QLQ+GN +VSM +F+LE  L+ IEK+RVTH WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 300 VSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG 359
            S+VKKFDLSSLK IGSGAAPL K+L+EEC +N+P V + QGYGMTETCG+V+VE+P LG
Sbjct: 299 -SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLG 357

Query: 360 VQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMP---------------- 403
            +NSGS G L  GVEAQIV V+T K  PPNQ GE+WVRGP +M                 
Sbjct: 358 KRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKK 417

Query: 404 -----GDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDP 455
                GDLGYF+E G L++VDRIKELIK  GFQV   ELEG+LVSHP+ILDAVVIPFPD 
Sbjct: 418 SWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDE 477

Query: 456 EAGEVPIAYVVRSPNSSLTKEDVQKFVA 483
           EAGEVPIA+VVRSPNSS+T++D+QKF+A
Sbjct: 478 EAGEVPIAFVVRSPNSSITEQDIQKFIA 505

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp\|Q0DV32\|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2	Back alignment and function description

>sp\|Q84P21\|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2	Back alignment and function description

>sp\|Q84P25\|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2	Back alignment and function description

>sp\|P0C5B6\|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1	Back alignment and function description

>sp\|Q84P26\|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2	Back alignment and function description

>sp\|Q3E6Y4\|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2	Back alignment and function description

>sp\|Q84P24\|4CLL6_ARATH 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2	Back alignment and function description

>sp\|Q9S725\|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2	Back alignment and function description

>sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		488
255565415		542	AMP dependent CoA ligase, putative [Rici	0.981	0.883	0.669	0.0
224127622		543	4-coumarate-coa ligase [Populus trichoca	0.985	0.885	0.653	0.0
224077516		543	4-coumarate-coa ligase [Populus trichoca	0.985	0.885	0.651	0.0
225436506		544	PREDICTED: 4-coumarate--CoA ligase-like	0.989	0.887	0.650	0.0
380042366		543	acyl-activating enzyme 3 [Cannabis sativ	0.979	0.880	0.652	0.0
297809709		544	hypothetical protein ARALYDRAFT_490166 [	0.983	0.882	0.641	0.0
15234634		544	4-coumarate--CoA ligase-like 7 [Arabidop	0.983	0.882	0.637	0.0
312281669		543	unnamed protein product [Thellungiella h	0.985	0.885	0.629	0.0
449459112		543	PREDICTED: 4-coumarate--CoA ligase-like	0.983	0.883	0.636	0.0
356539342		548	PREDICTED: 4-coumarate--CoA ligase-like	0.989	0.881	0.608	1e-179

>gi\|255565415\|ref\|XP_002523698.1\| AMP dependent CoA ligase, putative [Ricinus communis] gi\|223537002\|gb\|EEF38638.1\| AMP dependent CoA ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/511 (66%), Positives = 405/511 (79%), Gaps = 32/511 (6%)

Query: 1   MEKSGYGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQF 60
           MEKSGYGRDGIYRSLRP LVLP+DPNLSMV FLFRN  SY  K ALIDAD  ++L+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPLLVLPKDPNLSMVSFLFRNCNSYPHKPALIDADLSKTLSFSQL 60

Query: 61  KSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120
           KSIVIKVSHG   LG++K+DVVLIFAPNS QFPIC L + +IG IATTANP+YT +E+SK
Sbjct: 61  KSIVIKVSHGLLKLGISKNDVVLIFAPNSYQFPICFLAITSIGAIATTANPLYTTTEISK 120

Query: 121 QVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNH--IVSPRGLRSSSNIVYFDELIELSG 178
           Q+KDS+PKLV+TVPELW +VKDFN+PAV LG+    ++ P     +S I  FD L+EL G
Sbjct: 121 QIKDSNPKLVITVPELWNKVKDFNLPAVFLGAKESLLIEP-----NSRIKSFDHLVELGG 175

Query: 179 NASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTL 238
           + S FP ++VKQTD A LLYSSGTTG+ KG ILTH NFIA+S M  MDQE+AG L  V L
Sbjct: 176 SNSEFPTINVKQTDIATLLYSSGTTGISKGVILTHGNFIAASQMITMDQEIAGELHNVFL 235

Query: 239 CVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAK 298
           C LPMFHVFGL+ + Y+QLQ GN VVSM KFD E  L+A+EKYR+TH WVVPP+ILALAK
Sbjct: 236 CFLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKYRITHLWVVPPVILALAK 295

Query: 299 NVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLL 358
             SLVKK+DLSSL+ +GSGAAPL KEL+EEC+K +P   + QGYGMTET G+V+VENP +
Sbjct: 296 Q-SLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQGYGMTETTGIVSVENPRI 354

Query: 359 GVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILM---------------- 402
           GV++SGS GTL AG+EAQI+ VDTLKPLPPNQ+GE+WVRGP +M                
Sbjct: 355 GVRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMMRGYFNNPQATKQTIDK 414

Query: 403 -----PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPD 454
                 GDLGYFDE G+L++VDRIKELIK  GFQV   ELEG+LVSHPE+LDAVVIPFPD
Sbjct: 415 KGWLHTGDLGYFDEDGKLYVVDRIKELIKYKGFQVAPAELEGLLVSHPELLDAVVIPFPD 474

Query: 455 PEAGEVPIAYVVRSPNSSLTKEDVQKFVAND 485
            EAGEVP+AYVVRSPNSSLT+E+VQK++A+ 
Sbjct: 475 AEAGEVPVAYVVRSPNSSLTEEEVQKYIADQ 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224127622\|ref\|XP_002329323.1\| 4-coumarate-coa ligase [Populus trichocarpa] gi\|224127626\|ref\|XP_002329324.1\| acyl:coa ligase [Populus trichocarpa] gi\|222870777\|gb\|EEF07908.1\| 4-coumarate-coa ligase [Populus trichocarpa] gi\|222870778\|gb\|EEF07909.1\| acyl:coa ligase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224077516\|ref\|XP_002305282.1\| 4-coumarate-coa ligase [Populus trichocarpa] gi\|222848246\|gb\|EEE85793.1\| 4-coumarate-coa ligase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225436506\|ref\|XP_002276353.1\| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|380042366\|gb\|AFD33347.1\| acyl-activating enzyme 3 [Cannabis sativa]	Back alignment and taxonomy information

>gi\|297809709\|ref\|XP_002872738.1\| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi\|297318575\|gb\|EFH48997.1\| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|312281669\|dbj\|BAJ33700.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|449459112\|ref\|XP_004147290.1\| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi\|449528351\|ref\|XP_004171168.1\| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356539342\|ref\|XP_003538157.1\| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		488
TAIR\|locus:2115673		544	AT4G05160 [Arabidopsis thalian	0.825	0.740	0.643	1.6e-171
TAIR\|locus:2034423		565	AT1G20480 [Arabidopsis thalian	0.809	0.699	0.368	5e-85
TAIR\|locus:2034403		550	AT1G20500 [Arabidopsis thalian	0.803	0.712	0.371	5.7e-84
TAIR\|locus:2117209		566	AT4G19010 [Arabidopsis thalian	0.799	0.689	0.366	7.3e-84
TAIR\|locus:2176662		550	4CL8 [Arabidopsis thaliana (ta	0.786	0.698	0.375	1.2e-83
TAIR\|locus:2094716		556	4CL2 "4-coumarate:CoA ligase 2	0.795	0.697	0.365	1.7e-80
TAIR\|locus:2158559		562	AT5G63380 [Arabidopsis thalian	0.813	0.706	0.360	2.2e-80
TAIR\|locus:2017602		561	4CL1 "4-coumarate:CoA ligase 1	0.811	0.705	0.361	4.1e-79
TAIR\|locus:2015003		561	4CL3 "4-coumarate:CoA ligase 3	0.776	0.675	0.362	1.1e-78
TAIR\|locus:2015499		542	ACOS5 "acyl-CoA synthetase 5"	0.778	0.701	0.326	1.2e-75

TAIR\|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1358 (483.1 bits), Expect = 1.6e-171, Sum P(2) = 1.6e-171
 Identities = 262/407 (64%), Positives = 325/407 (79%)

Query:     1 MEKSGYGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQF 60
             MEKSGYGRDGIYRSLRP LVLP+DPN S+V FLFRNS+SY SK A+ D+D+G+SLTFSQ 
Sbjct:     1 MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query:    61 KSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120
             KS V +++HGF  LG+ K+DVVLIFAPNS QFP+C L V AIGG+ TTANP+YTV+E+SK
Sbjct:    61 KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query:   121 QVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVS-PRGLRSSSNIVYFDELIELSGN 179
             Q+KDS+PK++++V +L++++K F++P VLLGS   V  P G  S+S I+ FD ++ELS  
Sbjct:   121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPG--SNSKILSFDNVMELSEP 178

Query:   180 ASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLC 239
              S +P V +KQ+DTAALLYSSGTTG  KG  LTH NFIA+SLM  MDQ+L G    V LC
Sbjct:   179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query:   240 VLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKN 299
              LPMFHVFGL+ + Y+QLQ+GN +VSM +F+LE  L+ IEK+RVTH WVVPP+ LAL+K 
Sbjct:   239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query:   300 VSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG 359
              S+VKKFDLSSLK IGSGAAPL K+L+EEC +N+P V + QGYGMTETCG+V+VE+P LG
Sbjct:   299 -SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLG 357

Query:   360 VQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDL 406
              +NSGS G L  GVEAQIV V+T K  PPNQ GE+WVRGP +M G L
Sbjct:   358 KRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYL 404

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR\|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54P78	4CL2_DICDI	6, ., 2, ., 1, ., 1, 2	0.3203	0.9180	0.8130	yes	no
Q0DV32	4CLL1_ORYSJ	6, ., 2, ., 1, ., -	0.4891	0.9774	0.8641	yes	no
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.6377	0.9836	0.8823	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.766
4th Layer	6.2.1.12	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ACLL12	4-coumarate-coa ligase (544 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)	•	•	0.966
	PAL5	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)	•	•	0.962
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)	•	•	0.947
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)	•	•	0.947
	C4H3	SubName- Full=Trans-cinnamate 4-hydroxylase; (465 aa)	•	•	0.926
	C4H2	SubName- Full=Putative uncharacterized protein; (505 aa)	•	•	0.926
	C4H1	SubName- Full=Trans-cinnamate 4-hydroxylase; (505 aa)	•	•	0.903
	CAM1	RecName- Full=Caffeoyl-CoA O-methyltransferase 1; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)	•	•	0.903
	COMT1	SubName- Full=Caffeic acid 3-O-methyltransferase; (365 aa)	•	•	0.902
	gw1.8531.4.1	hypothetical protein (134 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		488
cd05904		504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	0.0
cd05911		487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-153
PLN02246		537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-131
PLN02574		560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-129
COG0318		534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-117
cd05936		468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-112
PLN02330		546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-99
pfam00501		412	pfam00501, AMP-binding, AMP-binding enzyme	3e-98
PRK07656		513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	9e-88
cd05929		342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	4e-86
cd05917		347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-84
PRK06187		521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-84
cd05935		430	cd05935, LC_FACS_like, Putative long-chain fatty a	5e-81
COG0365		528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-79
cd04433		338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-79
PRK08314		546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-74
cd12119		517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	4e-67
PRK06710		563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	4e-65
cd05926		345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	7e-62
cd05912		407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-59
cd05920		483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	3e-59
PRK08316		523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	8e-59
PRK03640		483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-58
TIGR03205		541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	8e-57
cd05907		456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-56
PRK05605		573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	6e-56
cd05903		437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-55
PRK07529		632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-55
cd12118		520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	7e-55
PRK06839		496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-54
PRK08974		560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-53
COG1022		613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-52
PRK05677		562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	5e-52
cd05941		430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-51
cd05922		350	cd05922, FACL_like_6, Uncharacterized subfamily of	5e-51
PRK07059		557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-50
PRK08315		559	PRK08315, PRK08315, AMP-binding domain protein; Va	8e-50
cd05934		421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-48
PRK07786		542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-47
PRK06178		567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-47
cd05944		359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-46
TIGR01923		436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-45
PRK07788		549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-45
PRK06188		524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	9e-45
PRK12583		558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-44
cd05959		506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	8e-44
PLN02860		563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-43
PRK04319		570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-43
PRK06145		497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-43
PRK07514		504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-43
PRK08276		502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-43
cd05931		547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-42
PRK12406		509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-41
PRK08751		560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-41
PRK13295		547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-40
cd05971		439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-40
PRK13391		511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-40
PRK08008		517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-40
PRK07470		528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-38
cd05967		607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-38
TIGR01733		409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-38
PRK06087		547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-37
cd05909		489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-36
PRK12492		562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-34
TIGR03098		517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-33
cd05969		443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-33
TIGR03208		538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-33
PRK06155		542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-33
cd05970		537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-32
cd05930		445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-32
cd05945		447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-31
COG1021		542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-30
PRK13382		537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	9e-30
cd05972		430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	9e-30
cd05966		602	cd05966, ACS, Acetyl-CoA synthetase (also known as	2e-29
cd05919		436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	8e-29
PRK08633		1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-28
COG1020		642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-28
PRK06018		542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-28
PRK05852		534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-27
cd05918		447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-27
PRK07798		533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	5e-27
PRK09088		488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	9e-27
cd05923		495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-26
cd05958		487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-26
cd05968		474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	4e-26
PRK08162		545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	9e-26
cd05906		560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-25
PRK09274		552	PRK09274, PRK09274, peptide synthase; Provisional	2e-25
TIGR02188		625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-25
cd05932		504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-25
TIGR02316		628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-25
PLN03102		579	PLN03102, PLN03102, acyl-activating enzyme; Provis	5e-25
PRK07787		471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	5e-25
TIGR02275		526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	7e-25
PRK06164		540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	9e-25
cd05974		433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-24
cd05915		509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-24
cd05924		365	cd05924, FACL_like_5, Uncharacterized subfamily of	5e-24
PRK05620		576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-23
PRK13390		501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	2e-23
PTZ00237		647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	3e-23
cd12117		474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-23
PRK07008		539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-22
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-22
TIGR02262		508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-21
PRK10524		629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	2e-21
cd05914		448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-21
PRK06334		539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	2e-21
PRK08279		600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	8e-21
cd12115		449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	9e-21
cd05933		594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-20
cd05973		440	cd05973, MACS_like_2, Uncharacterized subfamily of	9e-20
PRK07638		487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-19
cd05928		530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-19
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-19
PRK12467		3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-19
cd05940		444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-19
cd05910		455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-19
cd05943		616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-18
cd05908		499	cd05908, A_NRPS_MycA_like, The adenylation domain	5e-18
PRK09029		458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	7e-18
PRK07867		529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-18
PRK12467		3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-17
PRK12467		3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-17
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-17
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-17
PRK00174		637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-16
PRK13383		516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-16
PLN02479		567	PLN02479, PLN02479, acetate-CoA ligase	3e-16
cd12114		476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	6e-16
PRK05850		578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-15
PTZ00216		700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	5e-15
cd12116		438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	8e-15
PRK13388		540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-14
cd05927		539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	2e-14
PRK07768		545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-14
PRK06814		1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-14
PLN02654		666	PLN02654, PLN02654, acetate-CoA ligase	5e-14
PRK07824		358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	7e-14
PRK07445		452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	2e-12
cd05927		539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	4e-12
PRK12582		624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-12
PRK08308		414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	1e-11
cd05938		535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	3e-11
PRK08043		718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	5e-11
PRK06060		705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-10
PRK03584		655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-10
PLN02861		660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	5e-10
PRK10946		536	PRK10946, entE, enterobactin synthase subunit E; P	6e-10
PRK07769		631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	6e-10
TIGR01734		502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	8e-10
cd05941		430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-09
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	1e-09
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	2e-09
PLN02736		651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-09
PRK10252		1296	PRK10252, entF, enterobactin synthase subunit F; P	9e-09
cd05921		559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-08
PRK05851		525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-08
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	2e-07
PRK09192		579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
PRK05857		540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-07
cd05937		468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-07
PRK04813		503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	4e-07
TIGR01217		652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	5e-07
PRK08180		614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	5e-07
PLN02614		666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	8e-07
PLN02430		660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	9e-07
cd05939		474	cd05939, hsFATP4_like, Fatty acid transport protei	1e-06
PLN02736		651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-06
PLN02387		696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	4e-06
cd12116		438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-05
PRK12476		612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	3e-05
cd05912		407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	8e-05
cd05930		445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-04
cd05972		430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-04
PRK04813		503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	0.001
PTZ00342		746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	0.003

>gnl\|CDD\|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	Back alignment and domain information

 Score =  583 bits (1505), Expect = 0.0
 Identities = 233/489 (47%), Positives = 304/489 (62%), Gaps = 40/489 (8%)

Query: 21  LPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHD 80
           +P+D +L     LF  ++ +G + ALIDA +G +LT+++ + +V +++ G    G  K D
Sbjct: 1   IPKDLSLDSASLLF--ASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGD 58

Query: 81  VVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERV 140
           VVL+ +PNS++FP+  L V++ G + TTANP+YT +E++KQVKDS  KL +T  EL E++
Sbjct: 59  VVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKL 118

Query: 141 KDFN-IPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYS 199
                 P VLL S    S             D+L+         P V +KQ D AAL YS
Sbjct: 119 ASLALEPVVLLDSADDGS----------AAIDDLLFADEPEP--PVVVIKQDDVAALPYS 166

Query: 200 SGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQK 259
           SGTTG  KG +LTH+N IA+       +      + VTLCVLPMFH++GL+ ++ A L+ 
Sbjct: 167 SGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRL 226

Query: 260 GNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAA 319
           G  VV M +FDLE  L AIEKY+VTH  VVPPI+LAL K+  +V K+DLSSLK IGSGAA
Sbjct: 227 GATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKH-PIVDKYDLSSLKQIGSGAA 285

Query: 320 PLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVC 379
           PL KEL E      P V + QGYGMTE+  V T+          GS G LV  VEA+IV 
Sbjct: 286 PLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVD 345

Query: 380 VDTLKPLPPNQVGELWVRGPILM---------------------PGDLGYFDEHGQLFIV 418
            +T + LPPNQ GELWVRGP +M                      GDLGYFDE G LFIV
Sbjct: 346 PETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIV 405

Query: 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
           DR+KELIK  GFQV   ELE +L+SHPEI DA VIP+PD EAGE+P+A+VVR P S L++
Sbjct: 406 DRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSE 465

Query: 476 EDVQKFVAN 484
           ++V +FVA 
Sbjct: 466 DEVMQFVAK 474

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl\|CDD\|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)	Back alignment and domain information

>gnl\|CDD\|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase	Back alignment and domain information

>gnl\|CDD\|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like	Back alignment and domain information

>gnl\|CDD\|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	Back alignment and domain information

>gnl\|CDD\|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>gnl\|CDD\|215954 pfam00501, AMP-binding, AMP-binding enzyme	Back alignment and domain information

>gnl\|CDD\|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins	Back alignment and domain information

>gnl\|CDD\|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase	Back alignment and domain information

>gnl\|CDD\|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I	Back alignment and domain information

>gnl\|CDD\|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	Back alignment and domain information

>gnl\|CDD\|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis	Back alignment and domain information

>gnl\|CDD\|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)	Back alignment and domain information

>gnl\|CDD\|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>gnl\|CDD\|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA	Back alignment and domain information

>gnl\|CDD\|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	Back alignment and domain information

>gnl\|CDD\|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)	Back alignment and domain information

>gnl\|CDD\|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated	Back alignment and domain information

>gnl\|CDD\|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis	Back alignment and domain information

>gnl\|CDD\|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)	Back alignment and domain information

>gnl\|CDD\|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated	Back alignment and domain information

>gnl\|CDD\|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)	Back alignment and domain information

>gnl\|CDD\|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated	Back alignment and domain information

>gnl\|CDD\|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	Back alignment and domain information

>gnl\|CDD\|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>gnl\|CDD\|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	Back alignment and domain information

>gnl\|CDD\|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	Back alignment and domain information

>gnl\|CDD\|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain	Back alignment and domain information

>gnl\|CDD\|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)	Back alignment and domain information

>gnl\|CDD\|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated	Back alignment and domain information

>gnl\|CDD\|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)	Back alignment and domain information

>gnl\|CDD\|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like	Back alignment and domain information

>gnl\|CDD\|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	Back alignment and domain information

>gnl\|CDD\|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)	Back alignment and domain information

>gnl\|CDD\|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	Back alignment and domain information

>gnl\|CDD\|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)	Back alignment and domain information

>gnl\|CDD\|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes	Back alignment and domain information

>gnl\|CDD\|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>gnl\|CDD\|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)	Back alignment and domain information

>gnl\|CDD\|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	Back alignment and domain information

>gnl\|CDD\|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	Back alignment and domain information

>gnl\|CDD\|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents	Back alignment and domain information

>gnl\|CDD\|236443 PRK09274, PRK09274, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	Back alignment and domain information

>gnl\|CDD\|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase	Back alignment and domain information

>gnl\|CDD\|131369 TIGR02316, propion_prpE, propionate--CoA ligase	Back alignment and domain information

>gnl\|CDD\|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>gnl\|CDD\|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	Back alignment and domain information

>gnl\|CDD\|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	Back alignment and domain information

>gnl\|CDD\|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)	Back alignment and domain information

>gnl\|CDD\|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family	Back alignment and domain information

>gnl\|CDD\|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>gnl\|CDD\|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae	Back alignment and domain information

>gnl\|CDD\|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)	Back alignment and domain information

>gnl\|CDD\|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	Back alignment and domain information

>gnl\|CDD\|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237108 PRK12467, PRK12467, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes	Back alignment and domain information

>gnl\|CDD\|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)	Back alignment and domain information

>gnl\|CDD\|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)	Back alignment and domain information

>gnl\|CDD\|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|237108 PRK12467, PRK12467, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237108 PRK12467, PRK12467, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|178097 PLN02479, PLN02479, acetate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes	Back alignment and domain information

>gnl\|CDD\|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase	Back alignment and domain information

>gnl\|CDD\|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)	Back alignment and domain information

>gnl\|CDD\|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|215353 PLN02654, PLN02654, acetate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>gnl\|CDD\|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)	Back alignment and domain information

>gnl\|CDD\|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins	Back alignment and domain information

>gnl\|CDD\|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>gnl\|CDD\|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>gnl\|CDD\|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional	Back alignment and domain information

>gnl\|CDD\|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>gnl\|CDD\|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional	Back alignment and domain information

>gnl\|CDD\|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)	Back alignment and domain information

>gnl\|CDD\|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi	Back alignment and domain information

>gnl\|CDD\|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	Back alignment and domain information

>gnl\|CDD\|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>gnl\|CDD\|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>gnl\|CDD\|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins	Back alignment and domain information

>gnl\|CDD\|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>gnl\|CDD\|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase	Back alignment and domain information

>gnl\|CDD\|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)	Back alignment and domain information

>gnl\|CDD\|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	Back alignment and domain information

>gnl\|CDD\|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	Back alignment and domain information

>gnl\|CDD\|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		488
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK07788		549	acyl-CoA synthetase; Validated	100.0
PLN02574		560	4-coumarate--CoA ligase-like	100.0
PLN02654		666	acetate-CoA ligase	100.0
PRK07529		632	AMP-binding domain protein; Validated	100.0
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02246		537	4-coumarate--CoA ligase	100.0
PLN02330		546	4-coumarate--CoA ligase-like 1	100.0
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PTZ00237		647	acetyl-CoA synthetase; Provisional	100.0
PRK00174		637	acetyl-CoA synthetase; Provisional	100.0
PLN02614		666	long-chain acyl-CoA synthetase	100.0
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382		537	acyl-CoA synthetase; Provisional	100.0
PLN02860		563	o-succinylbenzoate-CoA ligase	100.0
PTZ00342		746	acyl-CoA synthetase; Provisional	100.0
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN03052		728	acetate--CoA ligase; Provisional	100.0
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK06839		496	acyl-CoA synthetase; Validated	100.0
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK08316		523	acyl-CoA synthetase; Validated	100.0
PLN02736		651	long-chain acyl-CoA synthetase	100.0
PLN02861		660	long-chain-fatty-acid-CoA ligase	100.0
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060		705	acyl-CoA synthetase; Validated	100.0
PRK07638		487	acyl-CoA synthetase; Validated	100.0
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK04319		570	acetyl-CoA synthetase; Provisional	100.0
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06145		497	acyl-CoA synthetase; Validated	100.0
PRK09274		552	peptide synthase; Provisional	100.0
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK08315		559	AMP-binding domain protein; Validated	100.0
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK13383		516	acyl-CoA synthetase; Provisional	100.0
PRK05852		534	acyl-CoA synthetase; Validated	100.0
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK12583		558	acyl-CoA synthetase; Provisional	100.0
PRK07514		504	malonyl-CoA synthase; Validated	100.0
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK07470		528	acyl-CoA synthetase; Validated	100.0
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06178		567	acyl-CoA synthetase; Validated	100.0
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06018		542	putative acyl-CoA synthetase; Provisional	100.0
PRK09088		488	acyl-CoA synthetase; Validated	100.0
PLN03102		579	acyl-activating enzyme; Provisional	100.0
PRK06188		524	acyl-CoA synthetase; Validated	100.0
PRK07867		529	acyl-CoA synthetase; Validated	100.0
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK13388		540	acyl-CoA synthetase; Provisional	100.0
PRK05857		540	acyl-CoA synthetase; Validated	100.0
PRK08180		614	feruloyl-CoA synthase; Reviewed	100.0
PRK12467		3956	peptide synthase; Provisional	100.0
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK10946		536	entE enterobactin synthase subunit E; Provisional	100.0
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PTZ00216		700	acyl-CoA synthetase; Provisional	100.0
PLN02430		660	long-chain-fatty-acid-CoA ligase	100.0
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06164		540	acyl-CoA synthetase; Validated	100.0
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK07868		994	acyl-CoA synthetase; Validated	100.0
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK12316		5163	peptide synthase; Provisional	100.0
PRK12467		3956	peptide synthase; Provisional	100.0
PRK12316		5163	peptide synthase; Provisional	100.0
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK13390		501	acyl-CoA synthetase; Provisional	100.0
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07787		471	acyl-CoA synthetase; Validated	100.0
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK07798		533	acyl-CoA synthetase; Validated	100.0
PRK12582		624	acyl-CoA synthetase; Provisional	100.0
PLN02479		567	acetate-CoA ligase	100.0
PRK05691		4334	peptide synthase; Validated	100.0
PRK08162		545	acyl-CoA synthetase; Validated	100.0
PRK13391		511	acyl-CoA synthetase; Provisional	100.0
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05691		4334	peptide synthase; Validated	100.0
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK09192		579	acyl-CoA synthetase; Validated	100.0
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308		414	acyl-CoA synthetase; Validated	100.0
PLN03051		499	acyl-activating enzyme; Provisional	100.0
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK05850		578	acyl-CoA synthetase; Validated	100.0
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PTZ00297		1452	pantothenate kinase; Provisional	100.0
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.97
KOG3628		1363	consensus Predicted AMP-binding protein [General f	99.96
TIGR03089		227	conserved hypothetical protein TIGR03089. This pro	99.96
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.95
KOG1178		1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.93
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.75
KOG3628		1363	consensus Predicted AMP-binding protein [General f	99.69
PRK09188		365	serine/threonine protein kinase; Provisional	99.32
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.32
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.83
PLN02249		597	indole-3-acetic acid-amido synthetase	98.25
PF13193		73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.23
PLN02620		612	indole-3-acetic acid-amido synthetase	98.17
PLN02247		606	indole-3-acetic acid-amido synthetase	98.15
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.5
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	90.49
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	86.4
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	86.02

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.9e-69  Score=527.36  Aligned_cols=445  Identities=41%  Similarity=0.660  Sum_probs=379.4

Q ss_pred             HhhccccCCCc-eEEEeCCC-CcceeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEee
Q 043601           33 LFRNSASYGSK-SALIDADS-GESLTFSQFKSIVIKVSHGFRHLG--VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATT  108 (488)
Q Consensus        33 l~~~a~~~p~~-~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~g--~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~  108 (488)
                      +.+.+..++++ +.+++... |+.+||+|++.++.++|.+|.++|  +++||+|++++||++++.+++|||+.+|+++.+
T Consensus        22 l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~  101 (537)
T KOG1176|consen   22 LGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNP  101 (537)
T ss_pred             ccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccc
Confidence            33444444444 66666532 699999999999999999999875  899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccC----CCeEEEcccCcccCCCCcCCCCccc-hHHHHhhcCCCCCC
Q 043601          109 ANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFN----IPAVLLGSNHIVSPRGLRSSSNIVY-FDELIELSGNASNF  183 (488)
Q Consensus       109 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  183 (488)
                      ++|.+...++...++.++++.+|++.+..+++....    ...+.+......  ........... +..+.....  +..
T Consensus       102 ~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~  177 (537)
T KOG1176|consen  102 LNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGV--ISISDLVEDLDAFEDLMPEGL--PDG  177 (537)
T ss_pred             cCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCc--cccccccccccchhhccccCC--Ccc
Confidence            999999999999999999999999999888875543    333333322000  00001111111 333333322  111


Q ss_pred             CCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceE
Q 043601          184 PDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCV  263 (488)
Q Consensus       184 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~  263 (488)
                       ......+|++.++|||||||.||||++||+++..+...  ..........++.++.+|++|.+|+...+...+..|+++
T Consensus       178 -~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~--~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~i  254 (537)
T KOG1176|consen  178 -IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLS--IKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTI  254 (537)
T ss_pred             -cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHH--hhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceE
Confidence             45667899999999999999999999999999887332  333344566899999999999999966666688888888


Q ss_pred             EEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEeccC
Q 043601          264 VSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYG  343 (488)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG  343 (488)
                      +....+++..+++.++++++|+++++|..+..|++. +.....+++++|.+.+||+++++++.+++.+++|...+.+.||
T Consensus       255 i~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~-p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YG  333 (537)
T KOG1176|consen  255 ICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS-PIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYG  333 (537)
T ss_pred             EECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC-CccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeec
Confidence            888889999999999999999999999999999997 5566789999999999999999999999999999899999999


Q ss_pred             cccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC---------------------Ccc
Q 043601          344 MTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---------------------ILM  402 (488)
Q Consensus       344 ~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---------------------~~~  402 (488)
                      +||+|+.++.+...+. .+.+++|++++++...+.+ ++|+.++.++.||||++|+                     |++
T Consensus       334 mTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~  411 (537)
T KOG1176|consen  334 MTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFH  411 (537)
T ss_pred             cccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccc
Confidence            9999988887776543 6899999999988888877 8999999999999999985                     899


Q ss_pred             ccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHH
Q 043601          403 PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQ  479 (488)
Q Consensus       403 tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~  479 (488)
                      |||+|++|+||+|++.+|++|+||.+|++|   |||++|.+||.|.||+||+.+++.+||.++|+|+.+++...++++|+
T Consensus       412 TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~  491 (537)
T KOG1176|consen  412 TGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDII  491 (537)
T ss_pred             cCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHH
Confidence            999999999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q 043601          480 KFVANDSQ  487 (488)
Q Consensus       480 ~~~~~~l~  487 (488)
                      +|++++|+
T Consensus       492 ~~v~k~l~  499 (537)
T KOG1176|consen  492 EYVRKKLP  499 (537)
T ss_pred             HHHHhhCC
Confidence            99999987

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]	Back alignment and domain information

>TIGR03089 conserved hypothetical protein TIGR03089	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B	Back alignment and domain information

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

Homologous Structure Templates