Citrus Sinensis ID: 043611

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MNKTATATTPPTRTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINVTTAAADASV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccEEHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mnktatattpptrtqlhgqgvedqkaktskSYLVLLVTNYLCLFVGSVSASLLSKYYFnhkgssrwvSTWVQcagfplllppiflpyylfkcterrpfshfttKVLTLSILVGLLLGLNNLLFswgnsylpvstSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALgsghdkspdlpkskyFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATvgmasdggypemkreaqtvydkgpvVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINVTTAAADASV
Flexible Loop (DISEMBL)
mnktatattpptrtqlhgqgvedqkakTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEaekvesqkemvQINVTTAAADASV
Low Complexity Region (SEG)
MNKtatattpptrtQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGfplllppiflpyylfKCTERRPFSHFTTKVltlsilvglllglnnllfswgnsYLPvstsalllssqllfnlvfsvIIVKQKITFSNLNCVIlltlssvllalgsGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINVTTAAADASV
Disordered region (IsUnstruct)
******************************SYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG******LPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQ*******************************
Disordered Region (DISOPRED)
********************************LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLF**********FTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLL*****************FIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG***************************************
Disordered Region (DISEMBL)
***************************TSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINVTTAAADASV
Disordered Region (DISPRO)
**************************KTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQE*************KEMVQINVTTAAA****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKTATATTPPTRTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINVTTAAADASV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q9SY29	382	Probable purine permease	yes	no	0.866	0.869	0.645	1e-112
Q9FZ96	356	Purine permease 1 OS=Arab	no	no	0.785	0.845	0.369	1e-49
Q9FZ95	351	Purine permease 3 OS=Arab	no	no	0.819	0.894	0.324	3e-49
Q94GB1	358	Purine permease 2 OS=Arab	no	no	0.832	0.891	0.340	5e-46
Q9LPF6	379	Probable purine permease	no	no	0.872	0.881	0.344	9e-44
O49726	390	Probable purine permease	no	no	0.892	0.876	0.330	2e-43
Q8RY83	361	Probable purine permease	no	no	0.859	0.911	0.345	2e-42
O49725	390	Probable purine permease	no	no	0.913	0.897	0.319	3e-40
O49722	387	Probable purine permease	no	no	0.916	0.906	0.328	6e-39
Q9FLL4	358	Putative purine permease	no	no	0.866	0.927	0.333	7e-38

>sp|Q9SY29|PUP4_ARATH Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1

 Score =  407 bits (1045), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/333 (64%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 13  RTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQ 72
           R     Q  E+      K  L LL+  Y  LF GS+++SLL+KYYF + GSSRWVSTWVQ
Sbjct: 5   RVNADPQQEENMVKPPVKRSLTLLIVTYFFLFFGSIASSLLAKYYFVYGGSSRWVSTWVQ 64

Query: 73  CAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPV 132
            AGFPLLL  I+ P+Y+ K T RRPF+ FT + L  S+L+GL+LG NN LFSWG SYLPV
Sbjct: 65  SAGFPLLLILIYFPHYVLKTTTRRPFTRFTLRHLIFSVLIGLVLGFNNFLFSWGTSYLPV 124

Query: 133 STSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK 192
           STS+LLLS+QL+F L+ S IIVKQKITFSNLNCV+LLTLSSVLLAL S  DK   L K+K
Sbjct: 125 STSSLLLSTQLVFTLILSRIIVKQKITFSNLNCVVLLTLSSVLLALDSSKDKPSGLTKTK 184

Query: 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGY 252
           YFIG+  T+GAGLLFALYLPV E +Y+ VYCY+MVME+QLVME AAT  AT+GMA +GG+
Sbjct: 185 YFIGYVSTIGAGLLFALYLPVTEKLYRTVYCYAMVMEVQLVMEFAATVFATIGMACEGGF 244

Query: 253 PEMKREAQTVYDKGPVVY-CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMN 311
            EM +EA  V+ KGP  Y    I+ NVVTWQL F  T+GMV+LTS +TGGI MTA+LAMN
Sbjct: 245 KEMVKEANHVFTKGPTFYWTFAILANVVTWQLSFAATSGMVYLTSGITGGICMTALLAMN 304

Query: 312 VIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG 344
           VI GVV YGD FGGVK VSTVLC WGF SY YG
Sbjct: 305 VIGGVVAYGDVFGGVKIVSTVLCIWGFSSYTYG 337

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ96|PUP1_ARATH Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 13/314 (4%)

Query: 46  GSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPY--------YLFKCTERRP 97
           G+    LL++ YF + G   W  +++  AGFP++L P+ + +               +R 
Sbjct: 16  GTCGGPLLTRLYFTNGGKRIWFMSFLSTAGFPIILIPLLVSFLSRRRSNRNPNNAENKRK 75

Query: 98  FSHF--TTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVK 155
              F   T +   SI++GLL GL+N L+S+G +YLPVSTS+L++ +QL FN +F+ ++VK
Sbjct: 76  TKLFLMETPLFIASIVIGLLTGLDNYLYSYGLAYLPVSTSSLIIGTQLAFNALFAFLLVK 135

Query: 156 QKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVME 215
           QK T  ++N V+LLT+   +LAL S  DK     K +Y +GF  TV A LL+A  LP++E
Sbjct: 136 QKFTPFSINAVVLLTVGIGILALHSDGDKPAKESKKEYVVGFLMTVVAALLYAFILPLVE 195

Query: 216 MIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL 272
           + YKK      + +V+E+Q+VM +AAT    +GM   G +  + REA+     G V Y  
Sbjct: 196 LTYKKARQEITFPLVLEIQMVMCLAATFFCVIGMFIVGDFKVIAREAREFKIGGSVFYYA 255

Query: 273 TIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTV 332
            I+   + WQ  F+G  G+VF  SSL  G+ ++ +L +  +  VV + + F   K VS +
Sbjct: 256 LIVITGIIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKGVSLL 315

Query: 333 LCAWGFCSYVYGMY 346
           L  WGF SY YG +
Sbjct: 316 LSLWGFVSYFYGEF 329

Proton-coupled purine transporter mediating adenine and trans-zeatin uptake. Also able to transport caffeine and adenosine. May be involved in the uptake of cytokinin, caffeine and nicotine from the xylem sap into shoot tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ95|PUP3_ARATH Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 190/333 (57%), Gaps = 19/333 (5%)

Query: 35  LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTE 94
           L++ N + L +G+    L+ + YFN+ G   W ST+++ AGFP++  P+   Y     T 
Sbjct: 5   LVIINCIILAIGNCGGPLIMRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSY----ITR 60

Query: 95  RRP--------FSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFN 146
           RR         F     ++L  +++VG+L G +N L+++G +YLPVST+AL+++SQL F 
Sbjct: 61  RRSNNVGDSTSFFLIKPRLLIAAVIVGILSGFDNYLYAYGIAYLPVSTAALIIASQLAFI 120

Query: 147 LVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLL 206
            +FS  +VK K T   +N V+LLT+ + +L + +  DK       +Y  GF  TV A ++
Sbjct: 121 AIFSFFMVKHKFTPFTINAVVLLTVGAAVLGMHTETDKPVHETHKQYITGFLITVAAAVM 180

Query: 207 FALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVY 263
           +A  LP++E+ Y+K      Y++V+E QL++ + A+ ++ +GM   G +  + +EA+  +
Sbjct: 181 YAFILPLVELAYQKAKQTMSYTLVLEFQLILCLLASIVSVIGMFIAGDFKALPKEARE-F 239

Query: 264 DKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSF 323
             G  ++ +  + + + WQ  F+G  G++F TSSL  GI ++ +L +  +  V+ Y + F
Sbjct: 240 KLGEALFYVVAVFSAIIWQGFFLGAIGLIFSTSSLVSGIMISVLLPITEVLAVIFYHEKF 299

Query: 324 GGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEK 356
              K +S  L  WGF SY YG   ++K  E ++
Sbjct: 300 QAEKGLSLALSLWGFVSYFYG---EIKSGEDKR 329

May be involved in transport of purine derivatives during pollen germination and tube elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94GB1|PUP2_ARATH Purine permease 2 OS=Arabidopsis thaliana GN=PUP2 PE=1 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 190/341 (55%), Gaps = 22/341 (6%)

Query: 34  VLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLF--- 90
           VL++ N + L +G+    L+ + YF + G   W  +++Q  G PL+  P+ L +      
Sbjct: 6   VLVIINCIFLAIGNCGGPLMMRLYFQNGGERIWFPSFLQTVGCPLIFFPLLLSFLRRRRC 65

Query: 91  -KCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVF 149
            +  E  PF      +   +I+VGLL+G +N L+S+G +Y+PVST++L++S+QL F  +F
Sbjct: 66  LEEQETTPFFLMKPPLFIAAIVVGLLVGFDNYLYSYGLAYIPVSTASLIISAQLGFTALF 125

Query: 150 SVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFAL 209
           +  +VKQK T   +N ++LLT  +V+LAL S  DK  +    +Y +GF  T+GA LL+  
Sbjct: 126 AFFMVKQKFTPFTINAIVLLTGGAVVLALNSDSDKLANETHKEYVVGFIMTLGAALLYGF 185

Query: 210 YLPVMEMIYKK---VYCYSMVMEMQLVMEIAATALATVGMASDGGYP-----------EM 255
            LP++E+ YKK      Y++ +E Q+V+  AAT +  VGM + G +             +
Sbjct: 186 ILPLVELSYKKSGQRITYTLALEFQMVLCFAATCVCLVGMLAAGDFKVKHALFIFKNRVI 245

Query: 256 KREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAG 315
             EA+  +  G  +Y + I+   + WQ  F+G  G++F  SSL  GI ++A+L + VI  
Sbjct: 246 AGEARD-FKLGESLYYVVIVFTAIIWQAFFVGAIGLIFCASSLVSGIMVSALLPVTVILA 304

Query: 316 VVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEK 356
           V+ + + F   K V+  L  WG  SY YG   ++K +EK K
Sbjct: 305 VICFQEKFQAGKGVALALSLWGSVSYFYG---QVKSEEKTK 342

Mediates adenine transport. May be involved in the uptake of cytokinin analogs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF6|PUP11_ARATH Probable purine permease 11 OS=Arabidopsis thaliana GN=PUP11 PE=1 SV=1

 Score =  177 bits (450), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 196/340 (57%), Gaps = 6/340 (1%)

Query: 29  SKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYY 88
           S  + VL+  N   L  G  ++ LL ++Y++  G+S+W++T VQ A FP+L  P+ L   
Sbjct: 39  SWQWWVLVSVNIFFLIGGQAASVLLGRFYYDEGGNSKWMATLVQTAAFPILYIPLLLLPS 98

Query: 89  LFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLV 148
                           VL + +L+G+++  +N+L+S G  YL  ST +L+ ++QL FN V
Sbjct: 99  SASVESSESSCSLKYIVL-IYVLLGVIIAGDNMLYSVGLLYLSASTYSLICATQLAFNAV 157

Query: 149 FSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFA 208
           FS  I  QK T   LN V+LL+ S+ L+AL    D    + +SKY +GF CT+ A  L++
Sbjct: 158 FSYFINAQKFTALILNSVVLLSFSAALIALNDDADTPSGVSRSKYIVGFVCTLAASALYS 217

Query: 209 LYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK 265
           L L +M+  ++K+     +S+V+EMQ+   + AT ++ +G+ + G +  +  E +  Y K
Sbjct: 218 LLLSLMQFSFEKILKRETFSVVLEMQIYTSLVATCVSVIGLFASGEWRTLHGEMEG-YHK 276

Query: 266 GPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGG 325
           G   Y LT++   VTWQ+C +G  G++FL +SL   +  T  LA+  +A +VV+ D   G
Sbjct: 277 GQASYVLTLVWTAVTWQVCSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVVFRDKMSG 336

Query: 326 VKAVSTVLCAWGFCSYVYGMYV-KLKLQEKEKFGEAEKVE 364
           VK ++ ++  WGF SYVY  ++  LK+++  +  +A +VE
Sbjct: 337 VKIMAMLIAIWGFASYVYQNHIDDLKVRQARQQAQAGRVE 376

Arabidopsis thaliana (taxid: 3702)

>sp|O49726|PUP9_ARATH Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 190/351 (54%), Gaps = 9/351 (2%)

Query: 3   KTATATTPPTRTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKG 62
           K    T    R+ + G   +   + T K +L + +  +  +   SV A++L + Y+ + G
Sbjct: 15  KEPIPTDQDERSSVSGSQTKLSHSNTYKRWLRVAIYTFFVISGQSV-ATILGRLYYENGG 73

Query: 63  SSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERR-PFSHFTTKVLTLSILVGLLLGLNNL 121
           +S+W++T VQ  GFP+LLP   L       T+R    +    + L + I++GLL+G    
Sbjct: 74  NSKWLATVVQLVGFPILLPYHLLSVKTHTTTQRDGKLTSLRNRAL-VYIVLGLLVGAACY 132

Query: 122 LFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG 181
           L+S G  YLPVST +L+ +SQL F   FS ++  QK+T   LN + LLT+SS LLA  + 
Sbjct: 133 LYSIGLLYLPVSTLSLICASQLAFTAFFSYLLNSQKLTPIILNSLFLLTISSTLLAFNNE 192

Query: 182 HDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAA 238
              S  + K +Y  GF CTVGA   F L L + ++ ++KV     +S V+ M + M + A
Sbjct: 193 ESDSKKVTKGEYVKGFVCTVGASAGFGLLLSLQQLAFRKVLKKQTFSEVINMIIYMSLVA 252

Query: 239 TALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSL 298
           + ++ VG+ +   +  +  E +  Y  G V Y + ++   VTWQ+  +G  G++F  SSL
Sbjct: 253 SCVSVVGLFASSEWKTLSSEMEN-YKLGKVSYVMNLVWTAVTWQVFSIGCTGLIFELSSL 311

Query: 299 -TGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVK 348
            +  IS   +  + ++A V+++ D   G+K +S +L  WGF SYVY  Y+ 
Sbjct: 312 FSNAISALGLPVVPILA-VIIFHDKMNGLKVISMILAIWGFVSYVYQQYLD 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY83|PUP13_ARATH Probable purine permease 13 OS=Arabidopsis thaliana GN=PUP13 PE=2 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 193/342 (56%), Gaps = 13/342 (3%)

Query: 25  KAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLL-LPPI 83
           K K +  ++++ ++ +  +   ++ A LL ++Y+N  G+S+W+ST VQ  GFP+L LP  
Sbjct: 28  KLKRTHWWILVFISIFFLISAQAI-AVLLGRFYYNEGGNSKWISTLVQTCGFPILYLPLC 86

Query: 84  FLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQL 143
           FLP              F T V  + + +G  +GL+NLL+S+G  YL  ST ++L SSQL
Sbjct: 87  FLP----ASHSSSSSCSFKTLVW-IYLSLGFAIGLDNLLYSFGLLYLSASTYSILCSSQL 141

Query: 144 LFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA 203
            FN VFS  I  QKIT   L  V+ L++S+VL++L    +      K  Y IG  CTV A
Sbjct: 142 AFNGVFSYYINSQKITCLILFSVLFLSVSAVLVSLDDDSNSPSGDSKWSYLIGCLCTVFA 201

Query: 204 GLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQ 260
            L+++L L +M+  ++ V     +SMV+EMQ+   + A+ +A +G+ + G +  +  E +
Sbjct: 202 SLIYSLQLSLMQFSFENVLKSETFSMVLEMQIYTSLVASCVAVIGLFASGEWMLLSVEME 261

Query: 261 TVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYG 320
             + +G V+Y LT++G  V+WQL  +G   ++FL SSL   +  T  L +  +A + V+ 
Sbjct: 262 E-FHEGQVIYVLTLVGTAVSWQLGSVGAVALIFLVSSLFSNLIGTLSLIVTPLAAIAVFH 320

Query: 321 DSFGGVKAVSTVLCAWGFCSYVYGMYV-KLKLQEKEKFGEAE 361
           D    VK V+ ++   GF  Y+Y  Y+  LK+Q   +  +AE
Sbjct: 321 DKLTEVKMVAMLIAFMGFGFYIYQNYLDDLKVQRARE-AQAE 361

Arabidopsis thaliana (taxid: 3702)

>sp|O49725|PUP10_ARATH Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10 PE=2 SV=2

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 190/357 (53%), Gaps = 7/357 (1%)

Query: 3   KTATATTPPTRTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKG 62
           K    T    R  +     E   + T K +L + +  +  +  G   A++L + Y+++ G
Sbjct: 15  KEPNPTVQDERNSVSSSQAEVSHSNTYKRWLRVTLYTFFVI-SGQTVATILGRVYYDNGG 73

Query: 63  SSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLL 122
           +S+W++T VQ  GFP+LLP   L +     T+R          + + +++GLL+G +  L
Sbjct: 74  NSKWLATVVQLVGFPVLLPYYILSFKTHATTDRDGKRTSPRNRVLVYVVLGLLVGADCYL 133

Query: 123 FSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH 182
           +S G  YLPVST +L+ +SQL FN  FS  +  QK+T   LN + LLT+SS LLA  +  
Sbjct: 134 YSIGLLYLPVSTYSLICASQLAFNAFFSYFLNSQKLTPIILNSLFLLTISSTLLAFNNEE 193

Query: 183 DKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAAT 239
             S  + K +Y  GF CTV A   + L L + ++ + KV     +S VM+M + + + A+
Sbjct: 194 TDSTKVTKGEYVKGFICTVAASAGYGLVLSLQQLAFLKVLKKQNFSEVMDMIIYVSLVAS 253

Query: 240 ALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSL- 298
            ++ VG+ +   +  +  E    Y  G V Y + ++   VTWQ+  +G  G++F  SSL 
Sbjct: 254 CVSVVGLFASSEWKTLSSEMDN-YKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLF 312

Query: 299 TGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKE 355
           +  IS+  +  + ++A V+++ D   G+K +S +L  WGF SYVY  Y+  K  +K 
Sbjct: 313 SNAISVLGLPVVPILA-VIIFHDKMNGLKVISMILAIWGFTSYVYQQYLDDKNLKKN 368

Arabidopsis thaliana (taxid: 3702)

>sp|O49722|PUP6_ARATH Probable purine permease 6 OS=Arabidopsis thaliana GN=PUP6 PE=3 SV=2

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 199/383 (51%), Gaps = 32/383 (8%)

Query: 15  QLHGQGVEDQK----AKTSKSYLVLLVTNYLCLFV-GSVSASLLSKYYFNHKGSSRWVST 69
            LH  G  + K     ++ K    L V+ Y+ L + G   A+LL + Y+   G S W+ T
Sbjct: 12  HLHVNGEPEGKFSTEERSHKYSWRLRVSLYVTLLLAGETIATLLGRLYYEKGGKSTWLET 71

Query: 70  WVQCAGFPLLLPPIFLPYYLFK---CTERRPFSHFTTKVLTLSIL---VGLLLGLNNLLF 123
            VQ  GFPL LP     YY  K      +      T+  LTLS++   +GLL+  + +L+
Sbjct: 72  LVQLVGFPLTLPC----YYYLKPEPSKTKTITKKTTSSFLTLSLVYIGLGLLVAGHCILY 127

Query: 124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHD 183
           S+G  YLPVST +L+ +SQL FN VFS  +  QKIT   LN ++LLT+SS LL +     
Sbjct: 128 SFGLLYLPVSTFSLISASQLAFNAVFSYFLNSQKITPFILNSLVLLTISSTLLVI----Q 183

Query: 184 KSPDLPKSK--------YFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQL 232
             P+ P S         Y IG+ C VG+   ++L L + +  ++K+   Y +  +++M  
Sbjct: 184 HEPESPSSTSKSAAKSKYVIGYICAVGSSAGYSLVLSLTDYAFEKILKKYTFKAILDMAT 243

Query: 233 VMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMV 292
              + AT +  VG+   GG+ ++  E +  +  G   Y L  IG+ ++WQ C +G+ G++
Sbjct: 244 YPSMVATCVVVVGLFGSGGWKKLSTEMEE-FQLGKSSYILINIGSTISWQACLIGSVGLI 302

Query: 293 FLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYV-KLKL 351
              SSL   +  T  L +  +  VV + D   G+K V+  L  WGF SY Y  YV   K 
Sbjct: 303 IEVSSLFSNVISTLCLPVVPVLAVVFFRDEMSGIKLVAMFLAIWGFVSYGYQHYVNDRKP 362

Query: 352 QEKEKFGEAEKVESQKEMVQINV 374
           +E ++  ++++ E QK++  I+V
Sbjct: 363 EEDQELPQSKEEEEQKQVDTIHV 385

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLL4|PUP12_ARATH Putative purine permease 12 OS=Arabidopsis thaliana GN=PUP12 PE=3 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 187/342 (54%), Gaps = 10/342 (2%)

Query: 25  KAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLL-LPPI 83
           K   S+ ++++ ++ +  +   ++S  LL ++Y+N  G+S+W+ST VQ  GFP+L LP  
Sbjct: 22  KLNRSQWWILVFISIFFLISAQAISV-LLGRFYYNEGGNSKWISTLVQTGGFPILYLPLS 80

Query: 84  FLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQL 143
            LP      +     S  T   + LS+  G  +GL+N L+S G  YL  ST ++L +SQL
Sbjct: 81  LLPASQSSSSSSSSSSFKTLVWIYLSL--GFAIGLDNFLYSVGLLYLSASTYSILCASQL 138

Query: 144 LFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA 203
            FN VF   I  QKIT      V+ L++S+VL++L    +      K  Y IG FC V A
Sbjct: 139 AFNGVFYYYINSQKITCLIFFSVLFLSISAVLVSLDDDSNSPSGDSKWSYLIGCFCAVFA 198

Query: 204 GLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQ 260
            L+++L L +M+  ++KV      SMV+EMQ+   + A+ +A +G+ + G +  +  E +
Sbjct: 199 SLIYSLQLSLMQFSFEKVLKSETLSMVLEMQIYTSLVASCVAVIGLFASGEWMLLSVEME 258

Query: 261 TVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYG 320
             + +G V+Y LT++G  V+ QL  +G   ++FL SSL   +  T  L +  +A + V+ 
Sbjct: 259 E-FQEGQVIYVLTLVGAAVSCQLGCVGAVSLIFLVSSLFSNLISTLSLIVTPLAAIAVFH 317

Query: 321 DSFGGVKAVSTVLCAWGFCSYVYGMYV-KLKLQEKEKFGEAE 361
           D    VK V+  +   GF  Y+Y  Y+  LK+Q   +  +AE
Sbjct: 318 DKLTEVKMVAMPIAFTGFTFYIYQNYLDDLKVQRARE-AQAE 358

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
255586742	370	purine transporter, putative [Ricinus co	0.869	0.9	0.762	1e-139
224075391	413	predicted protein [Populus trichocarpa]	0.916	0.849	0.747	1e-133
255587172	382	purine transporter, putative [Ricinus co	0.929	0.931	0.743	1e-131
356532587	407	PREDICTED: probable purine permease 4-li	0.890	0.837	0.662	1e-127
225459886	367	PREDICTED: probable purine permease 4-li	0.900	0.940	0.689	1e-124
356558213	358	PREDICTED: probable purine permease 4-li	0.864	0.924	0.638	1e-121
356532585	409	PREDICTED: probable purine permease 4-li	0.958	0.897	0.650	1e-120
224053645	326	predicted protein [Populus trichocarpa]	0.851	1.0	0.782	1e-120
356529846	401	PREDICTED: probable purine permease 4-li	0.919	0.877	0.684	1e-118
18397682	382	purine permease 4 [Arabidopsis thaliana]	0.866	0.869	0.645	1e-111

>gi|255586742|ref|XP_002533991.1| purine transporter, putative [Ricinus communis] gi|223526011|gb|EEF28388.1| purine transporter, putative [Ricinus communis]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/337 (76%), Positives = 292/337 (86%), Gaps = 4/337 (1%)

Query: 14  TQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQC 73
           TQ  G   E+QKAK + S L+LLV NY  LFVGS+S+SLLSK+YFNH+GSSRWVSTWVQ 
Sbjct: 6   TQFQG---EEQKAKNTSS-LLLLVINYSFLFVGSISSSLLSKFYFNHRGSSRWVSTWVQS 61

Query: 74  AGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVS 133
           AGFPLL  PIFLPYYLFKCTERRPF  FT ++L LSIL+G +LGLNNLLFSWGNSYLPVS
Sbjct: 62  AGFPLLFFPIFLPYYLFKCTERRPFDRFTPRMLILSILIGFMLGLNNLLFSWGNSYLPVS 121

Query: 134 TSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKY 193
           TS+LLLSSQL+FNL+ SVIIVKQKITF NLNCVILLTLSSVLLA GS HD+   L  +KY
Sbjct: 122 TSSLLLSSQLVFNLILSVIIVKQKITFQNLNCVILLTLSSVLLAFGSRHDRPQGLTPAKY 181

Query: 194 FIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYP 253
           FIGFF TVGAGLLFALYLPVME IYK V CY MV+EMQ+VMEIAATALAT+GMASDGG+ 
Sbjct: 182 FIGFFSTVGAGLLFALYLPVMEKIYKNVCCYEMVIEMQMVMEIAATALATIGMASDGGFS 241

Query: 254 EMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVI 313
           EMKRE+Q V+D+G   Y +T+ GN++TWQLCFMGTAGMVFLTSSLTGGI MTA+LAMNV+
Sbjct: 242 EMKRESQVVFDRGEKWYWITVFGNIITWQLCFMGTAGMVFLTSSLTGGICMTALLAMNVL 301

Query: 314 AGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLK 350
            GV+VYG+ FGGVK VST+LC WGFCSYVYGM++K+K
Sbjct: 302 GGVLVYGEEFGGVKVVSTLLCGWGFCSYVYGMHLKMK 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075391|ref|XP_002304614.1| predicted protein [Populus trichocarpa] gi|222842046|gb|EEE79593.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/352 (74%), Positives = 301/352 (85%), Gaps = 1/352 (0%)

Query: 22  EDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLP 81
           EDQKA+T+K Y+ LLV NY  LFVGS+S+SLLSK+YFNH+GSSRWVSTWVQ AGFPLLL 
Sbjct: 61  EDQKARTNKRYIFLLVINYSFLFVGSLSSSLLSKFYFNHQGSSRWVSTWVQSAGFPLLLF 120

Query: 82  PIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSS 141
           PI+LP+Y+FKCT+RRPFS FT K+L LSI +GL+LGLNNLLFSWGNSYLPVSTS+LLLSS
Sbjct: 121 PIYLPFYVFKCTDRRPFSLFTPKLLILSIFIGLMLGLNNLLFSWGNSYLPVSTSSLLLSS 180

Query: 142 QLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTV 201
           QL+FNL+ S IIVKQKITF N NCVILLTLSSVLLALGS HDKS  L ++KYFIGF  T+
Sbjct: 181 QLVFNLILSAIIVKQKITFQNFNCVILLTLSSVLLALGSSHDKSQGLTRAKYFIGFLSTI 240

Query: 202 GAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQT 261
           GAGLLFALYLPVME IY+++YCY MV+EMQLVMEIAATALAT+GMAS GG+ EMKRE+Q 
Sbjct: 241 GAGLLFALYLPVMEKIYRRIYCYEMVVEMQLVMEIAATALATMGMASAGGFSEMKRESQV 300

Query: 262 VYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGD 321
            +DKG  VY +T+  NVVTWQLCFMGTAGMVFLTSSLTGGI MTA+LAMNV+ GVVVYGD
Sbjct: 301 RFDKGARVYWVTVFANVVTWQLCFMGTAGMVFLTSSLTGGICMTALLAMNVLGGVVVYGD 360

Query: 322 SFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQIN 373
            FGGVK VSTVLC WGFCSYVYG+Y+K+K +EKE   +   +E     V  N
Sbjct: 361 EFGGVKVVSTVLCGWGFCSYVYGLYLKMK-EEKEMENKNHGMEMAHNAVAPN 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587172|ref|XP_002534165.1| purine transporter, putative [Ricinus communis] gi|223525760|gb|EEF28219.1| purine transporter, putative [Ricinus communis]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/359 (74%), Positives = 306/359 (85%), Gaps = 3/359 (0%)

Query: 22  EDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLP 81
           EDQKAKTS+ Y++LLV NY CLF+GSVS+SLLSK+YF HKGSSRWVSTWVQ AGFPLLL 
Sbjct: 26  EDQKAKTSQRYMLLLVINYFCLFLGSVSSSLLSKFYFIHKGSSRWVSTWVQSAGFPLLLF 85

Query: 82  PIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSS 141
           PI+LPYYLFKCTER+PF+ FT ++L LS+L+GL+LGLNNLLFSWGNSYLPVSTS+LLLSS
Sbjct: 86  PIYLPYYLFKCTERKPFNRFTPRILMLSVLIGLMLGLNNLLFSWGNSYLPVSTSSLLLSS 145

Query: 142 QLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTV 201
           QL+FNL+ SVIIVKQ+ITF NLNCV+LLTLSSVLLALGS HD+   L  +KYFIGFF TV
Sbjct: 146 QLVFNLILSVIIVKQRITFQNLNCVMLLTLSSVLLALGSSHDRPQGLTTAKYFIGFFSTV 205

Query: 202 GAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQT 261
           GAGLLFALYLPVME IYK VYCY MVMEMQLVMEIAATALATVGMASDGG+ EMKRE++ 
Sbjct: 206 GAGLLFALYLPVMEKIYKNVYCYQMVMEMQLVMEIAATALATVGMASDGGFAEMKRESEY 265

Query: 262 VYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGD 321
           V+D G   Y +T+  NV TWQLCFMGTAGMVFLTSSLTGGI MTA+LAMNV+ GV+VYGD
Sbjct: 266 VFDGGEKWYWITVFTNVFTWQLCFMGTAGMVFLTSSLTGGICMTALLAMNVLGGVLVYGD 325

Query: 322 SFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINVTTAAAD 380
            FGGVK VST+LC WGFCSYVYGM++K+K  +KEK  E  K    K +  + +  AA +
Sbjct: 326 EFGGVKVVSTLLCGWGFCSYVYGMHLKMK-DDKEK--ENVKENESKNLETLEMVDAANN 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532587|ref|XP_003534853.1| PREDICTED: probable purine permease 4-like [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/344 (66%), Positives = 275/344 (79%), Gaps = 3/344 (0%)

Query: 13  RTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQ 72
            T+ H    EDQK+  +K Y  LL  NY+ LFVGSVS+SLL+KYYFNHKGSS+WVSTWVQ
Sbjct: 46  NTEQHHH--EDQKSMKNKRYKFLLFINYVLLFVGSVSSSLLTKYYFNHKGSSKWVSTWVQ 103

Query: 73  CAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPV 132
           CAGFP L+ PIFLP  L   TER+PF+ FT K+L  S  +G++LG NNLL+S+G +YLPV
Sbjct: 104 CAGFPFLIIPIFLPS-LLNYTERKPFTDFTPKMLCYSFCIGVMLGFNNLLYSFGVAYLPV 162

Query: 133 STSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK 192
           STSALLLSSQL+F L+ S IIVKQKITFSNLN VIL+T+SS++LAL S H+K   L +  
Sbjct: 163 STSALLLSSQLVFTLILSAIIVKQKITFSNLNSVILITMSSIILALNSSHEKPQGLTQKD 222

Query: 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGY 252
           YFIGF CT+GAGLLF+LYLP+ME IY++VYCY MVMEMQLVMEIAAT LAT GM   GG+
Sbjct: 223 YFIGFSCTIGAGLLFSLYLPLMEKIYERVYCYGMVMEMQLVMEIAATVLATGGMVYKGGF 282

Query: 253 PEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNV 312
            EMK EA  V+DKG   Y +T++ +VVTWQ CFMGTAGMVFLTSSLTGG+S TA+L+MNV
Sbjct: 283 SEMKEEADRVFDKGNTFYWVTVVLSVVTWQCCFMGTAGMVFLTSSLTGGVSATALLSMNV 342

Query: 313 IAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEK 356
           +AG +VY D+F G K V+TVLC WGFCSYVYGMY+K + +E+ K
Sbjct: 343 LAGWLVYHDAFKGFKIVATVLCIWGFCSYVYGMYIKREQEEEAK 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459886|ref|XP_002263453.1| PREDICTED: probable purine permease 4-like [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/345 (68%), Positives = 283/345 (82%)

Query: 22  EDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLP 81
           E + + TSK Y+VLL+  Y  LFVGSVS++LLSK+YF HKGSS WVSTWVQ  GFPLLL 
Sbjct: 21  EHKMSPTSKHYMVLLLITYFSLFVGSVSSTLLSKFYFIHKGSSIWVSTWVQSVGFPLLLL 80

Query: 82  PIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSS 141
            I+LP++LFKCT RRPF+ FT K+L LS+ +GL+LGLNN LFSWG SYLPVST++LLLSS
Sbjct: 81  LIYLPHHLFKCTRRRPFTSFTPKLLLLSVFIGLMLGLNNFLFSWGTSYLPVSTASLLLSS 140

Query: 142 QLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTV 201
           QL FNL+ S+IIVKQKITFSN NCVILLTLSS+LLAL S HD+  DL  +KYFIGFF T+
Sbjct: 141 QLAFNLILSIIIVKQKITFSNFNCVILLTLSSILLALSSNHDRPKDLTHAKYFIGFFSTI 200

Query: 202 GAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQT 261
           GAGLLFALYLPVMEMIYKKVYCY MV+EMQLVME+AATALAT+GMA+  G+ EMK+E++ 
Sbjct: 201 GAGLLFALYLPVMEMIYKKVYCYEMVIEMQLVMEMAATALATIGMAAGHGFSEMKKESEM 260

Query: 262 VYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGD 321
           V+D GP  Y LT++ N+VTWQ  FMGTAG+VFLT+SLTGGI MTA++A NV+ GV+ YGD
Sbjct: 261 VFDLGPKAYWLTLVFNMVTWQFAFMGTAGLVFLTTSLTGGICMTALMAANVLGGVLAYGD 320

Query: 322 SFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQ 366
             GG K VST+LC WGFCSYVYGMYVK+K +EK      +  E Q
Sbjct: 321 KLGGGKVVSTLLCVWGFCSYVYGMYVKMKEEEKNNNQSIQLPEQQ 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558213|ref|XP_003547402.1| PREDICTED: probable purine permease 4-like [Glycine max]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/332 (63%), Positives = 261/332 (78%), Gaps = 1/332 (0%)

Query: 22  EDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLP 81
           EDQK+ T+K Y  LL  NY+ LFVGSVS+SLL+KYYFNHKGSS+WVS+WVQCAGFP L+ 
Sbjct: 10  EDQKSMTNKRYRPLLFLNYVLLFVGSVSSSLLTKYYFNHKGSSKWVSSWVQCAGFPFLVI 69

Query: 82  PIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSS 141
           PIFLP  L   TER+PFS FT K+L  S  VG++LG NNLL+SWG +YLP+STS +LLS 
Sbjct: 70  PIFLPS-LLNYTERKPFSDFTPKMLWYSFCVGVMLGFNNLLYSWGVAYLPISTSGILLSF 128

Query: 142 QLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTV 201
           QL F L+ S IIVKQKITFSNLN +IL+T+SS +LA  S H+KS  L +  Y IGF CT+
Sbjct: 129 QLAFTLILSAIIVKQKITFSNLNSMILITMSSAILAFNSSHEKSEGLTQKDYIIGFSCTI 188

Query: 202 GAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQT 261
           GA  LF+LYLP+ME IY++VYCY MVMEMQ++MEIAATAL T GM   GG+ EM+ EA+ 
Sbjct: 189 GASFLFSLYLPLMERIYERVYCYEMVMEMQIIMEIAATALVTGGMVYKGGFSEMREEAER 248

Query: 262 VYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGD 321
           V+DKG   Y LT++ +VVTWQ C+MGTAG+VFLTSS+TGG+S  A+L++NV+AG  VY D
Sbjct: 249 VFDKGSTFYWLTVVSSVVTWQCCYMGTAGLVFLTSSVTGGVSANALLSLNVLAGWFVYHD 308

Query: 322 SFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQE 353
           +F G K V+TVLC WGFCSYVY MY K + +E
Sbjct: 309 AFNGFKIVATVLCIWGFCSYVYCMYFKRRQEE 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532585|ref|XP_003534852.1| PREDICTED: probable purine permease 4-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/378 (65%), Positives = 290/378 (76%), Gaps = 11/378 (2%)

Query: 5   ATATTPPTRTQLHGQGVEDQKAKTSKSY------LVLLVTNYLCLFVGSVSASLLSKYYF 58
           A   +P   T L     +   + T+K Y      + LLV NY CLFVGS+S+SLLSKYYF
Sbjct: 30  ADLVSPMDNTTLQLHADQKGSSSTNKRYINININMPLLVINYACLFVGSLSSSLLSKYYF 89

Query: 59  NHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGL 118
            HKGSSRWVSTWVQ AGFPLLL PI +PY LFK T+R PF+ FT ++L +SI +G++LG 
Sbjct: 90  THKGSSRWVSTWVQTAGFPLLLIPICVPY-LFKFTKRVPFNDFTPRMLIISISIGVMLGF 148

Query: 119 NNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178
           NNL FSWGNSYLPVSTSALLLSSQLLFNL+FSVIIVKQKITFSN+NCVILLTLSS+L+AL
Sbjct: 149 NNLFFSWGNSYLPVSTSALLLSSQLLFNLLFSVIIVKQKITFSNVNCVILLTLSSILIAL 208

Query: 179 GSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAA 238
            S H++   L +  YFIGFFCT+GAGL+FALYLP+ME IYKKV CY MVMEMQ++ME AA
Sbjct: 209 DSSHERPKGLTQKNYFIGFFCTIGAGLMFALYLPLMEKIYKKVNCYQMVMEMQVIMEGAA 268

Query: 239 TALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSL 298
           TALA VGM  DGG+ EMK E+Q V+DKG  VY +T++GNVVTWQLCFMGTAGMVFLTSSL
Sbjct: 269 TALAIVGMTWDGGFSEMKVESQMVFDKGSRVYWVTVMGNVVTWQLCFMGTAGMVFLTSSL 328

Query: 299 TGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFG 358
           TGGI MT +L+MNV+ GVV + D+FGGVKAVST LC  GFCSYVYG+Y   ++ E +   
Sbjct: 329 TGGICMTFLLSMNVLGGVVFFRDAFGGVKAVSTFLCILGFCSYVYGIYKDNQMGEHKLAS 388

Query: 359 EAEKV----ESQKEMVQI 372
              K      S  EM+ I
Sbjct: 389 TRNKTISSNASSTEMIHI 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053645|ref|XP_002297909.1| predicted protein [Populus trichocarpa] gi|222845167|gb|EEE82714.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 30  KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYL 89
           K Y+ LLV NYL LF GS+S+SLLSK+YFNH GSSRWVSTWVQ AGFPLL+ PI+LP+Y+
Sbjct: 1   KRYMFLLVINYLFLFAGSLSSSLLSKFYFNHHGSSRWVSTWVQSAGFPLLIFPIYLPFYV 60

Query: 90  FKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVF 149
            KCT+RRPFSHFT ++L LSIL+GL+LGLNNLLFSWGNSYLPVSTS+LLLSSQL+FNL+ 
Sbjct: 61  LKCTDRRPFSHFTPRILILSILIGLMLGLNNLLFSWGNSYLPVSTSSLLLSSQLVFNLIL 120

Query: 150 SVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFAL 209
           SVIIVKQKITF NLNCV+LLTLSSVLLALGS HDK   L ++KYF+GFF T+GAGLLFAL
Sbjct: 121 SVIIVKQKITFQNLNCVVLLTLSSVLLALGSTHDKPQGLTRAKYFVGFFSTIGAGLLFAL 180

Query: 210 YLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVV 269
           YLPVME IYK +YCY MVMEMQLVMEIAATALAT GMASDGG+ EMKRE+Q  +DKGP +
Sbjct: 181 YLPVMEKIYKWIYCYEMVMEMQLVMEIAATALATAGMASDGGFSEMKRESQVKFDKGPEI 240

Query: 270 YCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAV 329
           Y +T+  NVVTWQLCFMGTAGMVFLTSSLTGGI MTA+LAMNV+ GV+VYGD FGGVK V
Sbjct: 241 YWVTVFANVVTWQLCFMGTAGMVFLTSSLTGGICMTALLAMNVLGGVLVYGDEFGGVKVV 300

Query: 330 STVLCAWGFCSYVYGMYVKLKLQEKEK 356
           STVLC WGFCSYVYGMY+K++ +EKEK
Sbjct: 301 STVLCGWGFCSYVYGMYLKMR-EEKEK 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529846|ref|XP_003533498.1| PREDICTED: probable purine permease 4-like [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/365 (68%), Positives = 291/365 (79%), Gaps = 13/365 (3%)

Query: 19  QGVEDQKA--KTSKSY----LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQ 72
           Q   DQK    TSK Y    + LLV NY CLFVGS+S+SLLSKYYF HKGSSRWVSTWVQ
Sbjct: 36  QERADQKGIISTSKRYININMPLLVINYACLFVGSLSSSLLSKYYFTHKGSSRWVSTWVQ 95

Query: 73  CAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPV 132
            AGFPLL+ PI +PY LFK T+R PF+ FT ++L +SI +G++LG NNL FSWGNSYLPV
Sbjct: 96  TAGFPLLMIPICVPY-LFKFTKRVPFTDFTPRMLIISISIGVMLGFNNLFFSWGNSYLPV 154

Query: 133 STSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK 192
           STSALLLSSQLLFNL+FSVIIVKQKITFSN+NCVILLTLSS+LL L S H++   L +  
Sbjct: 155 STSALLLSSQLLFNLLFSVIIVKQKITFSNVNCVILLTLSSILLGLDSSHERPKGLNQKN 214

Query: 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGY 252
           YFIGFFCT+GAGL+FALYLP+ME IYKKV CY MVMEMQ++ME AATALA +GM  DGG+
Sbjct: 215 YFIGFFCTIGAGLMFALYLPLMEKIYKKVNCYQMVMEMQVIMEAAATALAIIGMTWDGGF 274

Query: 253 PEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNV 312
            EMK E+QTV+DKG  VY +T++GNVVTWQLCFMGTAGMVFLTSSLTGGISMT +L+MNV
Sbjct: 275 SEMKVESQTVFDKGSRVYWVTVMGNVVTWQLCFMGTAGMVFLTSSLTGGISMTFLLSMNV 334

Query: 313 IAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKV-----ESQK 367
           + GVVV+ D+FGGVKAVST LC WGFCSYVYG+Y K     + KF +         +S  
Sbjct: 335 LGGVVVFRDAFGGVKAVSTFLCIWGFCSYVYGIY-KYNQMGEHKFAQTRNKNISSNDSST 393

Query: 368 EMVQI 372
           EM+ I
Sbjct: 394 EMIHI 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397682|ref|NP_564365.1| purine permease 4 [Arabidopsis thaliana] gi|334182967|ref|NP_001185119.1| purine permease 4 [Arabidopsis thaliana] gi|75213346|sp|Q9SY29.1|PUP4_ARATH RecName: Full=Probable purine permease 4; Short=AtPUP4 gi|4926830|gb|AAD32940.1|AC004135_15 T17H7.15 [Arabidopsis thaliana] gi|21536872|gb|AAM61204.1| unknown [Arabidopsis thaliana] gi|28393519|gb|AAO42180.1| unknown protein [Arabidopsis thaliana] gi|28973181|gb|AAO63915.1| unknown protein [Arabidopsis thaliana] gi|332193161|gb|AEE31282.1| purine permease 4 [Arabidopsis thaliana] gi|332193162|gb|AEE31283.1| purine permease 4 [Arabidopsis thaliana]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/333 (64%), Positives = 252/333 (75%), Gaps = 1/333 (0%)

Query: 13  RTQLHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQ 72
           R     Q  E+      K  L LL+  Y  LF GS+++SLL+KYYF + GSSRWVSTWVQ
Sbjct: 5   RVNADPQQEENMVKPPVKRSLTLLIVTYFFLFFGSIASSLLAKYYFVYGGSSRWVSTWVQ 64

Query: 73  CAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPV 132
            AGFPLLL  I+ P+Y+ K T RRPF+ FT + L  S+L+GL+LG NN LFSWG SYLPV
Sbjct: 65  SAGFPLLLILIYFPHYVLKTTTRRPFTRFTLRHLIFSVLIGLVLGFNNFLFSWGTSYLPV 124

Query: 133 STSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK 192
           STS+LLLS+QL+F L+ S IIVKQKITFSNLNCV+LLTLSSVLLAL S  DK   L K+K
Sbjct: 125 STSSLLLSTQLVFTLILSRIIVKQKITFSNLNCVVLLTLSSVLLALDSSKDKPSGLTKTK 184

Query: 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGY 252
           YFIG+  T+GAGLLFALYLPV E +Y+ VYCY+MVME+QLVME AAT  AT+GMA +GG+
Sbjct: 185 YFIGYVSTIGAGLLFALYLPVTEKLYRTVYCYAMVMEVQLVMEFAATVFATIGMACEGGF 244

Query: 253 PEMKREAQTVYDKGPVVY-CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMN 311
            EM +EA  V+ KGP  Y    I+ NVVTWQL F  T+GMV+LTS +TGGI MTA+LAMN
Sbjct: 245 KEMVKEANHVFTKGPTFYWTFAILANVVTWQLSFAATSGMVYLTSGITGGICMTALLAMN 304

Query: 312 VIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG 344
           VI GVV YGD FGGVK VSTVLC WGF SY YG
Sbjct: 305 VIGGVVAYGDVFGGVKIVSTVLCIWGFSSYTYG 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2196989	382	PUP4 "AT1G30840" [Arabidopsis	0.898	0.900	0.508	6.9e-86
TAIR|locus:2194814	379	PUP11 "AT1G44750" [Arabidopsis	0.543	0.548	0.323	9.3e-38
TAIR|locus:2032148	356	PUP1 "AT1G28230" [Arabidopsis	0.608	0.654	0.320	4.4e-34
TAIR|locus:2032159	351	PUP3 "AT1G28220" [Arabidopsis	0.616	0.672	0.268	4.9e-33
TAIR|locus:2141887	387	PUP6 "AT4G18190" [Arabidopsis	0.639	0.633	0.267	3e-31
TAIR|locus:2057666	358	PUP2 "AT2G33750" [Arabidopsis	0.582	0.622	0.292	9.9e-31
TAIR|locus:2138203	361	ATPUP13 "AT4G08700" [Arabidops	0.540	0.573	0.305	1.1e-29
TAIR|locus:2163026	358	PUP12 "AT5G41160" [Arabidopsis	0.443	0.474	0.329	1.6e-28
TAIR|locus:2047520	361	PUP5 "AT2G24220" [Arabidopsis	0.806	0.855	0.236	5e-28
TAIR|locus:2141907	390	PUP10 "AT4G18210" [Arabidopsis	0.584	0.574	0.269	9e-28

TAIR|locus:2196989 PUP4 "AT1G30840" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 176/346 (50%), Positives = 211/346 (60%)

Query:    30 KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGXXXXXXXXXXXXXX 89
             K  L LL+  Y  LF GS+++SLL+KYYF + GSSRWVSTWVQ AG              
Sbjct:    22 KRSLTLLIVTYFFLFFGSIASSLLAKYYFVYGGSSRWVSTWVQSAGFPLLLILIYFPHYV 81

Query:    90 XKCTERRPFSHFTTKVXXXXXXXXXXXXXXXXXXXXXXXYLPXXXXXXXXXXXXXXXXXX 149
              K T RRPF+ FT +                        YLP                  
Sbjct:    82 LKTTTRRPFTRFTLRHLIFSVLIGLVLGFNNFLFSWGTSYLPVSTSSLLLSTQLVFTLIL 141

Query:   150 XXIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDLPKSKYFIGFFCTVGAGLLFAL 209
               IIVKQKITFSNLNCV+               DK   L K+KYFIG+  T+GAGLLFAL
Sbjct:   142 SRIIVKQKITFSNLNCVVLLTLSSVLLALDSSKDKPSGLTKTKYFIGYVSTIGAGLLFAL 201

Query:   210 YLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVV 269
             YLPV E +Y+ VYCY+MVME+QLVME AAT  AT+GMA +GG+ EM +EA  V+ KGP  
Sbjct:   202 YLPVTEKLYRTVYCYAMVMEVQLVMEFAATVFATIGMACEGGFKEMVKEANHVFTKGPTF 261

Query:   270 Y-CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKA 328
             Y    I+ NVVTWQL F  T+GMV+LTS +TGGI MTA+LAMNVI GVV YGD FGGVK 
Sbjct:   262 YWTFAILANVVTWQLSFAATSGMVYLTSGITGGICMTALLAMNVIGGVVAYGDVFGGVKI 321

Query:   329 VSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVESQKEMVQINV 374
             VSTVLC WGF SY YGMY+K+K +EKEK GE   V++ ++  ++ V
Sbjct:   322 VSTVLCIWGFSSYTYGMYMKMKKEEKEK-GEYSGVKTTEDSGEMEV 366

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0016020 "membrane" evidence=IEA;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

TAIR|locus:2194814 PUP11 "AT1G44750" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 69/213 (32%), Positives = 118/213 (55%)

Query:   156 QKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVME 215
             QK T   LN V+               D    + +SKY +GF CT+ A  L++L L +M+
Sbjct:   165 QKFTALILNSVVLLSFSAALIALNDDADTPSGVSRSKYIVGFVCTLAASALYSLLLSLMQ 224

Query:   216 MIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL 272
               ++K+     +S+V+EMQ+   + AT ++ +G+ + G +  +  E +  Y KG   Y L
Sbjct:   225 FSFEKILKRETFSVVLEMQIYTSLVATCVSVIGLFASGEWRTLHGEMEG-YHKGQASYVL 283

Query:   273 TIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTV 332
             T++   VTWQ+C +G  G++FL +SL   +  T  LA+  +A +VV+ D   GVK ++ +
Sbjct:   284 TLVWTAVTWQVCSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVVFRDKMSGVKIMAML 343

Query:   333 LCAWGFCSYVYGMYVK-LKLQEKEKFGEAEKVE 364
             +  WGF SYVY  ++  LK+++  +  +A +VE
Sbjct:   344 IAIWGFASYVYQNHIDDLKVRQARQQAQAGRVE 376

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:2032148 PUP1 "AT1G28230" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 76/237 (32%), Positives = 114/237 (48%)

Query:   129 YLPXXXXXXXXXXXXXXXXXXXXIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDL 188
             YLP                    ++VKQK T  ++N V+               DK    
Sbjct:   109 YLPVSTSSLIIGTQLAFNALFAFLLVKQKFTPFSINAVVLLTVGIGILALHSDGDKPAKE 168

Query:   189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAATALATVG 245
              K +Y +GF  TV A LL+A  LP++E+ YKK      + +V+E+Q+VM +AAT    +G
Sbjct:   169 SKKEYVVGFLMTVVAALLYAFILPLVELTYKKARQEITFPLVLEIQMVMCLAATFFCVIG 228

Query:   246 MASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMT 305
             M   G +  + REA+     G V Y   I+   + WQ  F+G  G+VF  SSL  G+ ++
Sbjct:   229 MFIVGDFKVIAREAREFKIGGSVFYYALIVITGIIWQGFFLGAIGIVFCASSLASGVLIS 288

Query:   306 AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVK-LKLQEKEKFGEAE 361
              +L +  +  VV + + F   K VS +L  WGF SY YG +    K+ +K +  E E
Sbjct:   289 VLLPVTEVFAVVCFREKFQAEKGVSLLLSLWGFVSYFYGEFKSGKKVVDKPQPPETE 345

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA;IDA

GO:0010184 "cytokinin transport" evidence=IDA

GO:0015211 "purine nucleoside transmembrane transporter activity" evidence=IDA

TAIR|locus:2032159 PUP3 "AT1G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 65/242 (26%), Positives = 116/242 (47%)

Query:   129 YLPXXXXXXXXXXXXXXXXXXXXIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDL 188
             YLP                     +VK K T   +N V+               DK    
Sbjct:   103 YLPVSTAALIIASQLAFIAIFSFFMVKHKFTPFTINAVVLLTVGAAVLGMHTETDKPVHE 162

Query:   189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAATALATVG 245
                +Y  GF  TV A +++A  LP++E+ Y+K      Y++V+E QL++ + A+ ++ +G
Sbjct:   163 THKQYITGFLITVAAAVMYAFILPLVELAYQKAKQTMSYTLVLEFQLILCLLASIVSVIG 222

Query:   246 MASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMT 305
             M   G +  + +EA+  +  G  ++ +  + + + WQ  F+G  G++F TSSL  GI ++
Sbjct:   223 MFIAGDFKALPKEARE-FKLGEALFYVVAVFSAIIWQGFFLGAIGLIFSTSSLVSGIMIS 281

Query:   306 AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVES 365
              +L +  +  V+ Y + F   K +S  L  WGF SY YG  +K   ++K +  + E  E+
Sbjct:   282 VLLPITEVLAVIFYHEKFQAEKGLSLALSLWGFVSYFYGE-IKSG-EDKRRIQQEESQET 339

Query:   366 QK 367
             ++
Sbjct:   340 EQ 341

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0016020 "membrane" evidence=IEA;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

TAIR|locus:2141887 PUP6 "AT4G18190" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 68/254 (26%), Positives = 116/254 (45%)

Query:   129 YLPXXXXXXXXXXXXXXXXXXXXIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDK---- 184
             YLP                     +  QKIT   LN ++               +     
Sbjct:   133 YLPVSTFSLISASQLAFNAVFSYFLNSQKITPFILNSLVLLTISSTLLVIQHEPESPSST 192

Query:   185 SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAATAL 241
             S    KSKY IG+ C VG+   ++L L + +  ++K+   Y +  +++M     + AT +
Sbjct:   193 SKSAAKSKYVIGYICAVGSSAGYSLVLSLTDYAFEKILKKYTFKAILDMATYPSMVATCV 252

Query:   242 ATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGG 301
               VG+   GG+ ++  E +  +  G   Y L  IG+ ++WQ C +G+ G++   SSL   
Sbjct:   253 VVVGLFGSGGWKKLSTEMEE-FQLGKSSYILINIGSTISWQACLIGSVGLIIEVSSLFSN 311

Query:   302 ISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVK-LKLQEKEKFGEA 360
             +  T  L +  +  VV + D   G+K V+  L  WGF SY Y  YV   K +E ++  ++
Sbjct:   312 VISTLCLPVVPVLAVVFFRDEMSGIKLVAMFLAIWGFVSYGYQHYVNDRKPEEDQELPQS 371

Query:   361 EKVESQKEMVQINV 374
             ++ E QK++  I+V
Sbjct:   372 KEEEEQKQVDTIHV 385

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:2057666 PUP2 "AT2G33750" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 71/243 (29%), Positives = 114/243 (46%)

Query:   129 YLPXXXXXXXXXXXXXXXXXXXXIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDL 188
             Y+P                     +VKQK T   +N ++               DK  + 
Sbjct:   105 YIPVSTASLIISAQLGFTALFAFFMVKQKFTPFTINAIVLLTGGAVVLALNSDSDKLANE 164

Query:   189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKV---YCYSMVMEMQLVMEIAATALATVG 245
                +Y +GF  T+GA LL+   LP++E+ YKK      Y++ +E Q+V+  AAT +  VG
Sbjct:   165 THKEYVVGFIMTLGAALLYGFILPLVELSYKKSGQRITYTLALEFQMVLCFAATCVCLVG 224

Query:   246 MASDGGYPEMKR------------EAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVF 293
             M + G + ++K             EA+  +  G  +Y + I+   + WQ  F+G  G++F
Sbjct:   225 MLAAGDF-KVKHALFIFKNRVIAGEARD-FKLGESLYYVVIVFTAIIWQAFFVGAIGLIF 282

Query:   294 LTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQE 353
               SSL  GI ++A+L + VI  V+ + + F   K V+  L  WG  SY YG   ++K +E
Sbjct:   283 CASSLVSGIMVSALLPVTVILAVICFQEKFQAGKGVALALSLWGSVSYFYG---QVKSEE 339

Query:   354 KEK 356
             K K
Sbjct:   340 KTK 342

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0016020 "membrane" evidence=IEA;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

TAIR|locus:2138203 ATPUP13 "AT4G08700" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 65/213 (30%), Positives = 108/213 (50%)

Query:   153 IVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLP 212
             I  QKIT   L  V+               +      K  Y IG  CTV A L+++L L 
Sbjct:   151 INSQKITCLILFSVLFLSVSAVLVSLDDDSNSPSGDSKWSYLIGCLCTVFASLIYSLQLS 210

Query:   213 VMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVV 269
             +M+  ++ V     +SMV+EMQ+   + A+ +A +G+ + G +  +  E +  ++ G V+
Sbjct:   211 LMQFSFENVLKSETFSMVLEMQIYTSLVASCVAVIGLFASGEWMLLSVEMEEFHE-GQVI 269

Query:   270 YCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAV 329
             Y LT++G  V+WQL  +G   ++FL SSL   +  T  L +  +A + V+ D    VK V
Sbjct:   270 YVLTLVGTAVSWQLGSVGAVALIFLVSSLFSNLIGTLSLIVTPLAAIAVFHDKLTEVKMV 329

Query:   330 STVLCAWGFCSYVYGMYVK-LKLQEKEKFGEAE 361
             + ++   GF  Y+Y  Y+  LK+Q   +  +AE
Sbjct:   330 AMLIAFMGFGFYIYQNYLDDLKVQRARE-AQAE 361

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:2163026 PUP12 "AT5G41160" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 58/176 (32%), Positives = 97/176 (55%)

Query:   190 KSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGM 246
             K  Y IG FC V A L+++L L +M+  ++KV      SMV+EMQ+   + A+ +A +G+
Sbjct:   185 KWSYLIGCFCAVFASLIYSLQLSLMQFSFEKVLKSETLSMVLEMQIYTSLVASCVAVIGL 244

Query:   247 ASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTA 306
              + G +  +  E +  + +G V+Y LT++G  V+ QL  +G   ++FL SSL   +  T 
Sbjct:   245 FASGEWMLLSVEMEE-FQEGQVIYVLTLVGAAVSCQLGCVGAVSLIFLVSSLFSNLISTL 303

Query:   307 ILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVK-LKLQEKEKFGEAE 361
              L +  +A + V+ D    VK V+  +   GF  Y+Y  Y+  LK+Q   +  +AE
Sbjct:   304 SLIVTPLAAIAVFHDKLTEVKMVAMPIAFTGFTFYIYQNYLDDLKVQRARE-AQAE 358

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:2047520 PUP5 "AT2G24220" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 75/317 (23%), Positives = 135/317 (42%)

Query:    31 SYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGXXXXXXXXXXXXXXX 90
             S+ +LL  +   + +   ++SLLS+ YF++ G S+W+ +WV  AG               
Sbjct:    35 SHWILLFFSGAAMLIAFPASSLLSRLYFSNGGKSKWIISWVAVAGWPITCLILLPTYIFQ 94

Query:    91 KCTERRPFSHFTTKVXXXXXXXXXXXXXXXXXXXXXXXYLPXXXXXXXXXXXXXXXXXXX 150
             K    +P +   TK+                       YLP                   
Sbjct:    95 KI---KP-TPLNTKLVLSYVVLGFLSAADNLMYAYAYAYLPASTSSLLASSSLAFSALFG 150

Query:   151 XIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDLPKSKYFIGFFCTVGAGLLFALY 210
              +IVK  +  S +N ++               D+   +  S+YF GFF  +    L  L 
Sbjct:   151 YLIVKNPLNASVINSIVVITGAMAIIALDSSSDRYSYISNSQYFAGFFWDIMGSALHGLI 210

Query:   211 LPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP 267
               + E+++ K+     + + +E Q+++ + A A  T+GM     +  M  EA++ +  G 
Sbjct:   211 FALSELLFVKLLGRRSFHVALEQQVMVSLTAFAFTTIGMVVSNDFQGMSHEAKS-FKGGE 269

Query:   268 VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVK 327
              +Y   ++ + VT+QL  +G   ++FL S++  G+     + +  +A V++  D   G K
Sbjct:   270 SLYTQVLVWSAVTFQLGVLGATAVLFLASTVMAGVLNAVRVPITSVAAVILMHDPMSGFK 329

Query:   328 AVSTVLCAWGFCSYVYG 344
              +S VL  WGF SY+YG
Sbjct:   330 ILSLVLTFWGFSSYIYG 346

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0016020 "membrane" evidence=IEA;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

TAIR|locus:2141907 PUP10 "AT4G18210" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
 Identities = 62/230 (26%), Positives = 105/230 (45%)

Query:   129 YLPXXXXXXXXXXXXXXXXXXXXIIVKQKITFSNLNCVIXXXXXXXXXXXXXGHDKSPDL 188
             YLP                     +  QK+T   LN +                  S  +
Sbjct:   140 YLPVSTYSLICASQLAFNAFFSYFLNSQKLTPIILNSLFLLTISSTLLAFNNEETDSTKV 199

Query:   189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYC---YSMVMEMQLVMEIAATALATVG 245
              K +Y  GF CTV A   + L L + ++ + KV     +S VM+M + + + A+ ++ VG
Sbjct:   200 TKGEYVKGFICTVAASAGYGLVLSLQQLAFLKVLKKQNFSEVMDMIIYVSLVASCVSVVG 259

Query:   246 MASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSL-TGGISM 304
             + +   +  +  E    Y  G V Y + ++   VTWQ+  +G  G++F  SSL +  IS+
Sbjct:   260 LFASSEWKTLSSEMDN-YKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLFSNAISV 318

Query:   305 TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEK 354
               +  + ++A V+++ D   G+K +S +L  WGF SYVY  Y+  K  +K
Sbjct:   319 LGLPVVPILA-VIIFHDKMNGLKVISMILAIWGFTSYVYQQYLDDKNLKK 367

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SY29	PUP4_ARATH	No assigned EC number	0.6456	0.8668	0.8691	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031262 hypothetical protein (413 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	5e-26
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.003

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score =  101 bits (254), Expect = 5e-26
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 1/149 (0%)

Query: 196 GFFCTVGAGLLFALYLPVMEMIYKKV-YCYSMVMEMQLVMEIAATALATVGMASDGGYPE 254
           GF   + A  LFAL L + + + KK       V+E+   +   A  +   G+    G+  
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 255 MKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIA 314
            K   +   D     Y L ++ + V   L  +   G++  TS LT  ++ T    + ++ 
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVL 120

Query: 315 GVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343
            V+++GD    +  +   +   G   Y Y
Sbjct: 121 SVIIFGDPVTFLNILGLAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 54/291 (18%), Positives = 94/291 (32%), Gaps = 23/291 (7%)

Query: 43  LFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFT 102
           L +          +                 A   L+   + LP  L +    RP     
Sbjct: 10  LALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALR-- 67

Query: 103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSN 162
              L L +L  L L L  LL      Y   S ++L++    LF  + +V+++  +     
Sbjct: 68  -PWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL 126

Query: 163 LNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY 222
               ILL L+ VLL L  G             +G    + A LL+ALY      + K++ 
Sbjct: 127 QILGILLALAGVLLILLGGGGGGILSL-----LGLLLALAAALLWALYT----ALVKRLS 177

Query: 223 CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQ 282
               V    L+  + A  L  +   S  G P                + L +   V +  
Sbjct: 178 RLGPVTLALLLQLLLALLLLLLFFLSGFGAPI-----------LSRAWLLLLYLGVFSTG 226

Query: 283 LCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVL 333
           L ++     + L  +    +          + GV++ G+     + +   L
Sbjct: 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL 277

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.88
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.87
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.87
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.85
PLN00411	358	nodulin MtN21 family protein; Provisional	99.84
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.83
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.8
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.8
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.77
PRK11272	292	putative DMT superfamily transporter inner membran	99.71
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.71
PRK15430	296	putative chloramphenical resistance permease RarD;	99.69
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.62
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.6
PRK11689	295	aromatic amino acid exporter; Provisional	99.57
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.51
KOG2765	416	consensus Predicted membrane protein [Function unk	99.5
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.49
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.49
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.39
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.33
KOG1582	367	consensus UDP-galactose transporter related protei	99.29
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.26
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.24
COG2962	293	RarD Predicted permeases [General function predict	99.21
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.95
KOG1581	327	consensus UDP-galactose transporter related protei	98.94
KOG1580	337	consensus UDP-galactose transporter related protei	98.88
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.72
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.72
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.69
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.67
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.65
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.64
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.63
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.28
PLN00411	358	nodulin MtN21 family protein; Provisional	98.27
KOG2766	336	consensus Predicted membrane protein [Function unk	98.19
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.16
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.12
COG2510	140	Predicted membrane protein [Function unknown]	98.09
PRK11689	295	aromatic amino acid exporter; Provisional	98.06
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.06
PRK11272	292	putative DMT superfamily transporter inner membran	97.99
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.95
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.91
PRK15430	296	putative chloramphenical resistance permease RarD;	97.84
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.82
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.69
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.57
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.51
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.46
COG2510	140	Predicted membrane protein [Function unknown]	97.4
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.39
PRK13499	345	rhamnose-proton symporter; Provisional	97.26
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.24
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.23
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.22
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.21
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.11
COG2076	106	EmrE Membrane transporters of cations and cationic	97.09
PRK11431	105	multidrug efflux system protein; Provisional	97.02
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.86
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.63
PRK13499	345	rhamnose-proton symporter; Provisional	96.55
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.52
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.36
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.23
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.16
COG2962	293	RarD Predicted permeases [General function predict	96.04
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.01
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.81
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.63
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.39
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	93.9
PRK09541	110	emrE multidrug efflux protein; Reviewed	93.45
COG2076	106	EmrE Membrane transporters of cations and cationic	93.3
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	93.27
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	92.91
PRK10650	109	multidrug efflux system protein MdtI; Provisional	92.04
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	91.77
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	91.66
PRK11431	105	multidrug efflux system protein; Provisional	90.97
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	90.92
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	90.85
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	90.07
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	90.04
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	84.78

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.88  E-value=1.1e-20  Score=187.61  Aligned_cols=274  Identities=15%  Similarity=0.173  Sum_probs=188.0

Q ss_pred             CCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHh
Q 043611           61 KGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLS  140 (383)
Q Consensus        61 gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~s  140 (383)
                      |-+.|..|++..-.--.+...|..+.    |+..+ +.....++.+.-|+.++++=-..|++...|++|++++..+++.+
T Consensus        39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~----r~~~~-~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~  113 (334)
T PF06027_consen   39 GVNIPTFQSFFNYVLLALVYTPILLY----RRGFK-KWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDC  113 (334)
T ss_pred             CccCcHHHHHHHHHHHHHHHhhhhhh----ccccc-cchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhh
Confidence            55779999987765444433333322    11111 11112234456677777777778899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043611          141 SQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKK  220 (383)
Q Consensus       141 sql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk  220 (383)
                      +..+|++++|++++|+|+++.|+.|+++...|.+++...|....+++.+..+...|++++++||++||++-++.|+..|+
T Consensus       114 ~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~  193 (334)
T PF06027_consen  114 TSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK  193 (334)
T ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999888887764322223344557899999999999999999999999888


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhhcccee-ecccch
Q 043611          221 VYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVF-LTSSLT  299 (383)
Q Consensus       221 ~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGlv~-~~Ssl~  299 (383)
                      .    ...|+..++++++.+++.+-+.+- |++++    ++ ++-. +.-...+++-++..-+.+. .+.+.. .+|+..
T Consensus       194 ~----~~~~~lg~~Glfg~ii~~iq~~il-e~~~i----~~-~~w~-~~~~~~~v~~~~~lf~~y~-l~p~~l~~ssAt~  261 (334)
T PF06027_consen  194 A----PRVEFLGMLGLFGFIISGIQLAIL-ERSGI----ES-IHWT-SQVIGLLVGYALCLFLFYS-LVPIVLRMSSATF  261 (334)
T ss_pred             C----CHHHHHHHHHHHHHHHHHHHHHhe-ehhhh----hc-cCCC-hhhHHHHHHHHHHHHHHHH-HHHHHHHhCccce
Confidence            7    367899999999998887554332 22222    22 2111 1001111111111111110 111222 345555


Q ss_pred             hhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611          300 GGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKL  351 (383)
Q Consensus       300 asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k  351 (383)
                      .|+-.....|.+.+..+++||+++++..++|.++++.|+..|...+.+++++
T Consensus       262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~  313 (334)
T PF06027_consen  262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA  313 (334)
T ss_pred             eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence            5554444566788999999999999999999999999999998876555443

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.87  E-value=5.9e-21  Score=181.86  Aligned_cols=300  Identities=13%  Similarity=0.098  Sum_probs=230.3

Q ss_pred             HHHHHHHHhhhhhHhhhhHhhcC-----C-CcchhHHHHHHHhhhhhhhhhhhccccccccCC--C-----CC--CCCcc
Q 043611           38 TNYLCLFVGSVSASLLSKYYFNH-----K-GSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTE--R-----RP--FSHFT  102 (383)
Q Consensus        38 ~~~~~l~~g~~~~~Ll~r~y~~~-----g-g~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~--~-----~~--~~~~~  102 (383)
                      +..+.|++.++.++++.|...+.     + =+||.+|++.|+-|+-+|+..+++.+...+++.  .     .+  .++++
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            34456777889999999988776     3 289999999999999999865555431111110  1     11  22678


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611          103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH  182 (383)
Q Consensus       103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~  182 (383)
                      |++++.+++|++.  +..++| .|++++.+|.+++++.+-.+|+.+||.-+++++++.+||.|+....+|.++++..+-.
T Consensus        86 p~lfl~Pal~Di~--gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~  162 (372)
T KOG3912|consen   86 PVLFLPPALCDIA--GSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH  162 (372)
T ss_pred             cceecChHHHHHh--hhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence            8889999999988  777888 9999999999999999999999999999999999999999999999998888866432


Q ss_pred             CCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HH----HHhcC-CCCcc
Q 043611          183 DKSPDLPK-SKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VG----MASDG-GYPEM  255 (383)
Q Consensus       183 ~~~~~~s~-~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vg----l~~~g-~~~~i  255 (383)
                      .+.+..++ +.-..|.++++.|.+..|.+.+++|+..+|..  ..++|...|.++++..++. .+    .+..+ .|+.=
T Consensus       163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n--V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~  240 (372)
T KOG3912|consen  163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN--VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCN  240 (372)
T ss_pred             cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc--CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCC
Confidence            22112222 23567999999999999999999999999986  7899999999998854444 33    22233 22211


Q ss_pred             chh-Hhh---hhc--CCcchhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHH
Q 043611          256 KRE-AQT---VYD--KGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAV  329 (383)
Q Consensus       256 ~~e-~~~---~F~--~g~~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kii  329 (383)
                      |+. .++   +|.  ++....++++..+.++...++...+.+..+.|+-++.+...++.-+.|+++....||.+...|+.
T Consensus       241 ~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqil  320 (372)
T KOG3912|consen  241 PRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQIL  320 (372)
T ss_pred             CCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            111 111   122  33355666777777776667766666677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 043611          330 STVLCAWGFCSYV  342 (383)
Q Consensus       330 g~~L~l~G~~~yi  342 (383)
                      |.++.+.|...|.
T Consensus       321 GFliLi~Gi~lY~  333 (372)
T KOG3912|consen  321 GFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888873

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.87  E-value=9.5e-20  Score=178.26  Aligned_cols=285  Identities=19%  Similarity=0.192  Sum_probs=202.9

Q ss_pred             hhhhhHhh-hhHhhcCCCc-chhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 043611           46 GSVSASLL-SKYYFNHKGS-SRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLF  123 (383)
Q Consensus        46 g~~~~~Ll-~r~y~~~gg~-~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly  123 (383)
                      +.+...++ .|..-.+.++ .+|.-+++|..--.+.-.+..... .+++.++.|        +.-++..+++..+.+.+-
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~   81 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF-KFPKSRKIP--------LKKYAILSFLFFLASVLS   81 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-cccCCCcCh--------HHHHHHHHHHHHHHHHHH
Confidence            33344333 3444444444 699999999997776654333331 101111111        223344566666666777


Q ss_pred             HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCC-CCCCCcchhHHHHHHHH
Q 043611          124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKS-PDLPKSKYFIGFFCTVG  202 (383)
Q Consensus       124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~-~~~s~~~~~iG~~l~L~  202 (383)
                      +.+++|+|.+++.+++++.++++++++++++|+|++++++.++++.++|+++...++..+++ ++........|+++.+.
T Consensus        82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~  161 (303)
T PF08449_consen   82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL  161 (303)
T ss_pred             HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999998887754432 22222223459999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh--cCCCCccchhHhhhhcCCcchhhhHHHHHHHH
Q 043611          203 AGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMAS--DGGYPEMKREAQTVYDKGPVVYCLTIIGNVVT  280 (383)
Q Consensus       203 Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~--~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~  280 (383)
                      +.++.|++....|+.++++.  ....|+..+..+++.+++.+.++.  .+++.+    ..+ |-...+.....+....+.
T Consensus       162 sl~~~a~~~~~qe~~~~~~~--~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~----~~~-f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  162 SLLLDAFTGVYQEKLFKKYG--KSPWELMFYTNLFSLPFLLILLFLLPTGEFRS----AIR-FISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH----HHH-HHHHhHHHHHHHHHHHHH
Confidence            99999999999999999986  556999999999999888877776  666432    122 211111111112222222


Q ss_pred             HHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcc
Q 043611          281 WQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMY  346 (383)
Q Consensus       281 wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~  346 (383)
                      -.++..++..++...|+++.+++.++|.+++.++++++||+++++.+++|.++++.|...|.|.++
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~  300 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK  300 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence            222222333334456999999999999999999999999999999999999999999999888543

; GO: 0055085 transmembrane transport

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.85  E-value=4.3e-19  Score=172.86  Aligned_cols=261  Identities=12%  Similarity=0.103  Sum_probs=173.8

Q ss_pred             CCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043611           61 KGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLL  139 (383)
Q Consensus        61 gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~  139 (383)
                      +-+-|+.-++.|.. +..++.+ ....   . ..+++   +.+++.+...+..|++.+.++.+.++|++|+++|.++++.
T Consensus        27 ~~~~P~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~   98 (302)
T TIGR00817        27 VFPYPYFKTLISLAVGSLYCLL-SWSS---G-LPKRL---KISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK   98 (302)
T ss_pred             hCChhHHHHHHHHHHHHHHHHH-HHHh---C-CCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34678999999887 4444332 2111   0 01111   1345667777788888888889999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043611          140 SSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYK  219 (383)
Q Consensus       140 ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~k  219 (383)
                      +++|+|+++++++++|||++++++.++++..+|+++.+.+ +.        +....|+++.++|++.+++|..+.|+..+
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~--------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~  169 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-EL--------SFNWAGFLSAMISNITFVSRNIFSKKAMT  169 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-cc--------cccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999998765321 11        12467999999999999999999888777


Q ss_pred             --hhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC-Cc--chhhhHHHHHHHHHHHHHhhhccceee
Q 043611          220 --KVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK-GP--VVYCLTIIGNVVTWQLCFMGTAGMVFL  294 (383)
Q Consensus       220 --k~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~-g~--~~y~l~l~~~av~wq~~~vg~vGlv~~  294 (383)
                        ++    +.+++..|....+.+++....+..++....+.+... ... ..  ..+...+.........++.-..-..-.
T Consensus       170 ~~~~----~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  244 (302)
T TIGR00817       170 IKSL----DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ-AISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGR  244 (302)
T ss_pred             cCCC----CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH-hhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence              44    456666777777666666433333322222222211 100 00  011111111111111111000011335


Q ss_pred             cccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          295 TSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       295 ~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      +|+...++...+.+.++.+++++++||+++..+++|.++++.|+..|.+
T Consensus       245 ~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       245 VSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             CCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            6777888886666666789999999999999999999999987766544

specificities overlap.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.84  E-value=2.3e-18  Score=172.86  Aligned_cols=290  Identities=14%  Similarity=0.175  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 043611           35 LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG  113 (383)
Q Consensus        35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  113 (383)
                      ...+.++.+=+++.+-.++.|.-++.|=+. ..-...-+. +..+++ |+.+.   ++++++.+  +.++|.+...++.|
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~-~~~~~~R~~iA~l~Ll-~~~~~---~~~~~~~~--~~~~~~~~~l~l~g   85 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSKGLNI-YPFLGYSYLLASLLLL-PSLFF---TNRSRSLP--PLSVSILSKIGLLG   85 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHHHH-HHHHH---HHHhcccC--cchHHHHHHHHHHH
Confidence            334444445556777778888888666444 434444443 444443 44332   12211111  12334455555566


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHH------hccccchhHHHHHHHHHHHHHHhcccCCCC----
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVII------VKQKITFSNLNCVILLTLSSVLLALGSGHD----  183 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~i------lkeK~t~~~i~svvLltiG~vll~~~~~~~----  183 (383)
                      ++-...+.++..|++|+|++.++++.+++|+|++++++++      +|||++++++.|+++.++|+.++..+++..    
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  165 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA  165 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            6544555678899999999999999999999999999999      699999999999999999988876533210    


Q ss_pred             -----------C-CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcC
Q 043611          184 -----------K-SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDG  250 (383)
Q Consensus       184 -----------~-~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g  250 (383)
                                 + +.+...++..+|+++.++|+++|++|..+.++..+|+.   .......|.++++..++. .++..++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP---AAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence                       0 01111223467999999999999999999998888873   333444555555554444 4454443


Q ss_pred             C-CCccchhHhhhhcCCc-chhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhH
Q 043611          251 G-YPEMKREAQTVYDKGP-VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKA  328 (383)
Q Consensus       251 ~-~~~i~~e~~~~F~~g~-~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~ki  328 (383)
                      + .+.  . ... +.... ...++.++ +.+.+.+.+-++    -..+...+++...+.+.++.+++++++||++++.++
T Consensus       243 ~~~~~--~-~~~-~~~~~~~i~y~~i~-t~lay~lw~~~v----~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~  313 (358)
T PLN00411        243 NNPSV--W-IIH-FDITLITIVTMAII-TSVYYVIHSWTV----RHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCL  313 (358)
T ss_pred             CCccc--c-eec-cchHHHHHHHHHHH-HHHHHHHHHHHH----hccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHH
Confidence            2 111  0 000 00000 00111111 111221111111    112333334444444444799999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 043611          329 VSTVLCAWGFCSYVY  343 (383)
Q Consensus       329 ig~~L~l~G~~~yiy  343 (383)
                      +|.++++.|+.....
T Consensus       314 iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        314 IGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988777554

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.8e-18  Score=168.82  Aligned_cols=299  Identities=15%  Similarity=0.162  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhh--hhhhhhhhhccccccc----cCCCCCCC---CcchHH
Q 043611           35 LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAG--FPLLLPPIFLPYYLFK----CTERRPFS---HFTTKV  105 (383)
Q Consensus        35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g--~plll~~~~~~~~~~~----~~~~~~~~---~~~~~~  105 (383)
                      +-.+..+.+.+..++=+++.|+=-..+ +-++..|-+-+..  .++.+ .++.. +...    ++..+..+   .-.|+.
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~-~~~f~~tt~v~~~Ei~Kl~~-c~~~~-~~~~~~~~~~~~~~l~~~i~~~~~~   91 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTRE-KPMFLPTTAVFLTEVIKLVF-CLFLL-LFEERKYAKKSLKSLSKEILAAPRE   91 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCC-CCCcchhHHHHHHHHHHHHH-HHHHH-HHHhhHHhhhhhhhcCHHHHhChHH
Confidence            334444556666677777777665556 5556666555543  33332 22222 1111    11111111   233456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC-
Q 043611          106 LTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK-  184 (383)
Q Consensus       106 ~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~-  184 (383)
                      .+-..++.++|+.||.++..++.|+|++||++..|.+...||+|++++++||++++||.+++++++|++++.++..+.. 
T Consensus        92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~  171 (345)
T KOG2234|consen   92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG  171 (345)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence            6777788999999998888999999999999999999999999999999999999999999999999999985543322 


Q ss_pred             CC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhh
Q 043611          185 SP-DLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVY  263 (383)
Q Consensus       185 ~~-~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F  263 (383)
                      +. ..+..+.++|+..+++++.++|+..++.|++.|.-....++.++|.+.  ++.++..++.... |+..+.  ..+ |
T Consensus       172 a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~--~g~~f~~l~~~~~-d~~~i~--~~g-f  245 (345)
T KOG2234|consen  172 AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYF--FGILFNLLTILLQ-DGEAIN--EYG-F  245 (345)
T ss_pred             ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHHHHHHHHHhhc-cccccc--cCC-c
Confidence            22 455667899999999999999999999999888765446777777766  6677777776544 444443  344 4


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHhh--hccc-eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          264 DKGPVVYCLTIIGNVVTWQLCFMG--TAGM-VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       264 ~~g~~~y~l~l~~~av~wq~~~vg--~vGl-v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      .+|...    .+|..+.++.  +|  .+++ ..+.....++.+.++...++.++++.+||-+++..-.+|..+++.....
T Consensus       246 f~G~s~----~vw~vVl~~a--~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l  319 (345)
T KOG2234|consen  246 FYGYSS----IVWLVVLLNA--VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL  319 (345)
T ss_pred             cccccH----HHHHHHHHHh--ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence            455332    2222222222  22  2222 3356777777888888888889999999999999999999999954444


Q ss_pred             HHhhcchh
Q 043611          341 YVYGMYVK  348 (383)
Q Consensus       341 yiy~~~~~  348 (383)
                      |.+.+++|
T Consensus       320 Y~~~P~~~  327 (345)
T KOG2234|consen  320 YSLYPARD  327 (345)
T ss_pred             hhcCCccc
Confidence            44334444

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.80  E-value=4.2e-18  Score=162.65  Aligned_cols=222  Identities=18%  Similarity=0.214  Sum_probs=166.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611          102 TTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG  181 (383)
Q Consensus       102 ~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~  181 (383)
                      .+|..+.+++++++++.+|.+...+++|+|+++++++.|+++++||+|+++++|+|++++||.|++++++|.+++..++.
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            45788899999999999998888999999999999999999999999999999999999999999999999999987764


Q ss_pred             CCC--C-CC-----CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 043611          182 HDK--S-PD-----LPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYP  253 (383)
Q Consensus       182 ~~~--~-~~-----~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~  253 (383)
                      .++  + ++     ....+...|+++++.++.++|+..+..|+..|+-....+..++|.  ++++.++..+..... |+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL--~~~gi~~~~~~~~~~-~~~  169 (244)
T PF04142_consen   93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQL--YLFGILFNLLALLLS-DGS  169 (244)
T ss_pred             cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHHHHHhcc-ccc
Confidence            331  1 11     123457899999999999999999999999999753344555554  446666666655443 333


Q ss_pred             ccchhHhhhhcCCcchhhhHHHHHHHHHHH-HHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHH
Q 043611          254 EMKREAQTVYDKGPVVYCLTIIGNVVTWQL-CFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTV  332 (383)
Q Consensus       254 ~i~~e~~~~F~~g~~~y~l~l~~~av~wq~-~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~  332 (383)
                      ++.+  +. |.+|...    .+|..+..+. ..+-+.-+..+.+++.+++...+...++.++++++||.+++..-++|..
T Consensus       170 ~~~~--~g-~f~G~~~----~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  170 AISE--SG-FFHGYSW----WVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             cccc--CC-chhhcch----HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            3222  22 3333221    2333222222 2222222355788899999999999999999999999999999988876


Q ss_pred             H
Q 043611          333 L  333 (383)
Q Consensus       333 L  333 (383)
                      +
T Consensus       243 ~  243 (244)
T PF04142_consen  243 L  243 (244)
T ss_pred             c
Confidence            5

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.80  E-value=1.6e-16  Score=158.96  Aligned_cols=293  Identities=12%  Similarity=0.069  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHH
Q 043611           33 LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSIL  111 (383)
Q Consensus        33 ~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (383)
                      .+.+.+.|++-........+..|.=.+. -..||.-++.|.. ++-++. .+.... .+++  + +... .++.+.-.+.
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~-~~~~~~-~~~~--~-~~~~-~~~~~~~llp  119 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFAL-LYWATG-FRKI--P-RIKS-LKLFLKNFLP  119 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHH-HHHHhC-CCCC--C-CCCC-HHHHHHHHHH
Confidence            3666667777666666666666655544 2459999999988 655443 222221 1111  1 1110 1122333334


Q ss_pred             HHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 043611          112 VGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKS  191 (383)
Q Consensus       112 ~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~  191 (383)
                      +|++....+.....|+++.++|.++++.++.|+|+++++++++|||++++++.++++.++|+.+...++.         .
T Consensus       120 ~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~  190 (350)
T PTZ00343        120 QGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------H  190 (350)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------h
Confidence            4444333344445999999999999999999999999999999999999999999999999877664321         1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhh---hhc
Q 043611          192 KYFIGFFCTVGAGLLFALYLPVMEMIYKKVYC---YSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQT---VYD  264 (383)
Q Consensus       192 ~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~---~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~---~F~  264 (383)
                      ....|+++.++|++.+++|..+.|+..++...   .....++..+..+++.+++. +..+.++.  .......+   .+.
T Consensus       191 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~--~~~~~~~~~~~~~~  268 (350)
T PTZ00343        191 FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGK--KWVPVWTNYTANMT  268 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHhhhccc
Confidence            14779999999999999999999998877520   12344555555666665555 33333332  11111111   011


Q ss_pred             CCcchhhh-HHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          265 KGPVVYCL-TIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       265 ~g~~~y~l-~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      ...+...+ .++.+.+.+.+++....-.+-.+|.+..++...+++.++.+++++++||+++..+++|.++++.|...|-+
T Consensus       269 ~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        269 NYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            11110011 12223333333333222223456788889999988888999999999999999999999999988877643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.77  E-value=4.5e-16  Score=147.22  Aligned_cols=255  Identities=20%  Similarity=0.229  Sum_probs=165.4

Q ss_pred             hHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 043611           50 ASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG-LLLGLNNLLFSWGNS  128 (383)
Q Consensus        50 ~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-ll~a~~~~Ly~~gl~  128 (383)
                      ..+..|.-.+++ -.+|..++.....-++++.+++..    +    ++     ++.+......| +..+.++.+|..|++
T Consensus         4 ~~~~~k~~~~~~-~~~~~~~~~r~~~~~l~l~~~~~~----~----~~-----~~~~~~~~~~~~~~~~l~~~~~~~a~~   69 (260)
T TIGR00950         4 TGVVIGQYLEGQ-VPLYFAVFRRLIFALLLLLPLLRR----R----PP-----LKRLLRLLLLGALQIGVFYVLYFVAVK   69 (260)
T ss_pred             hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHh----c----cC-----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566655553 455666666666333343343322    1    11     11122233333 445678888889999


Q ss_pred             CCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 043611          129 YLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFA  208 (383)
Q Consensus       129 ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~g  208 (383)
                      |+|++..+++.+++|+|+++++.+++|||++++++.++++..+|+.++..++..        +.+..|+++.+.|+++|+
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~--------~~~~~G~~~~l~a~~~~a  141 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL--------SINPAGLLLGLGSGISFA  141 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc--------cccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998887643211        125689999999999999


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhh
Q 043611          209 LYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGT  288 (383)
Q Consensus       209 l~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~  288 (383)
                      .+..+.++..++..  .....+..+..+++.+++..-....++...  .+... +   ....++.++.+.+.+.+++.+.
T Consensus       142 ~~~~~~k~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-~---~~~~~~~~~~~~~~~~~~~~a~  213 (260)
T TIGR00950       142 LGTVLYKRLVKKEG--PELLQFTGWVLLLGALLLLPFAWFLGPNPQ--ALSLQ-W---GALLYLGLIGTALAYFLWNKGL  213 (260)
T ss_pred             HHHHHHhHHhhcCC--chHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cchHH-H---HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888887763  122333334555666555533333332111  11111 0   0011122333333333332222


Q ss_pred             ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHH
Q 043611          289 AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGF  338 (383)
Q Consensus       289 vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~  338 (383)
                          -+.+.-.++++..+.++++.+++++++||+++..+++|.++++.|.
T Consensus       214 ----~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       214 ----TLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             ----hcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence                2234455566666777778999999999999999999999999775

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.71  E-value=1.5e-14  Score=140.80  Aligned_cols=272  Identities=15%  Similarity=0.112  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHH
Q 043611           36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGL  114 (383)
Q Consensus        36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl  114 (383)
                      +++..+.+.+--+.+.+..|.-.+  +-+++.-+..... +..+++ +++..   ++++ . +    ++|.+.....+|+
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll-~~~~~---~~~~-~-~----~~~~~~~~~~~g~   76 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLL-AFLLL---RGHP-L-P----TLRQWLNAALIGL   76 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHH-HHHHH---hCCC-C-C----cHHHHHHHHHHHH
Confidence            334444455566678888886554  3566666666666 444433 44322   1111 1 1    2344555566776


Q ss_pred             HH-HHHHHHHHHhh-cCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 043611          115 LL-GLNNLLFSWGN-SYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK  192 (383)
Q Consensus       115 l~-a~~~~Ly~~gl-~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~  192 (383)
                      +. +..+.++.++. +++|++..+++.+++|+|+++++.+ +|||++++++.++++..+|+.++..++..        +.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~  147 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------cc
Confidence            54 34556777898 9999999999999999999999986 69999999999999999998777543211        11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcchhh
Q 043611          193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPVVYC  271 (383)
Q Consensus       193 ~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~~y~  271 (383)
                      ...|.++.++|+++|++|....++..++.     ......+...++..++. .+...++++...+ +.+. +   ....+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~i~~  217 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPLPV-----GMMAGAAEMLAAGVVLLIASLLSGERLTALP-TLSG-F---LALGY  217 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHHHHHHHHHHcCCcccccC-CHHH-H---HHHHH
Confidence            35799999999999999988777654332     12222333333333333 3332222211100 0111 0   01122


Q ss_pred             hHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611          272 LTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV  342 (383)
Q Consensus       272 l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi  342 (383)
                      +.+..+++.+.++..+.    .+.+.-.+++...+.++.+.+++++++||+++..+++|.++++.|.....
T Consensus       218 l~i~~s~~~~~l~~~~~----~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        218 LAVFGSIIAISAYMYLL----RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            23333444443333322    12233334444555555579999999999999999999999997776643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.71  E-value=1.4e-14  Score=141.40  Aligned_cols=270  Identities=14%  Similarity=0.149  Sum_probs=161.7

Q ss_pred             HHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHH-HHHH
Q 043611           44 FVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLG-LNNL  121 (383)
Q Consensus        44 ~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a-~~~~  121 (383)
                      .+.-+.+.+..|.-.++  -+++.-+...+. +..+++ ++. .    +++  .+     ++.+.   ..|+... .+..
T Consensus        13 ~~~Wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~~~l~-~~~-~----~~~--~~-----~~~~~---~~g~~~~~~~~~   74 (299)
T PRK11453         13 VVVWGLNFVVIKVGLHN--MPPLMLAGLRFMLVAFPAI-FFV-A----RPK--VP-----LNLLL---GYGLTISFGQFA   74 (299)
T ss_pred             HHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH-HHh-c----CCC--Cc-----hHHHH---HHHHHHHHHHHH
Confidence            33445666777866543  456555555544 332222 221 1    111  11     12222   2344322 3445


Q ss_pred             HHHHhhcC-CChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHH
Q 043611          122 LFSWGNSY-LPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCT  200 (383)
Q Consensus       122 Ly~~gl~y-lp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~  200 (383)
                      ++..+++| +|++..+++.+++|+++.+++++++|||++++++.++++.++|+.++..++..+      ......|+++.
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------~~~~~~G~~l~  148 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------QHVAMLGFMLT  148 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC------cchhHHHHHHH
Confidence            56688888 799999999999999999999999999999999999999999988776332111      11135799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcc--hhhhHHHHH
Q 043611          201 VGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPV--VYCLTIIGN  277 (383)
Q Consensus       201 L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~--~y~l~l~~~  277 (383)
                      +.|++.|++|..+.++..++. .....+.++.+..+++..+.. .+...+++. ....+... .....+  ..++.++.+
T Consensus       149 l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~l~~l~i~~t  225 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASLILDGSA-TMIHSLVT-IDMTTILSLMYLAFVAT  225 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhcc-CCHHHHHHHHHHHHHHH
Confidence            999999999999999876654 223344555666666554444 333333331 11000000 000001  112223334


Q ss_pred             HHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611          278 VVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG  344 (383)
Q Consensus       278 av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~  344 (383)
                      ++.+.++..+.-    ..+...++.+..+.+.++.+++++++||+++..+++|.++++.|.....++
T Consensus       226 ~~~~~l~~~~l~----~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        226 IVGYGIWGTLLG----RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            444443332220    012223344444444446999999999999999999999999888765553

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.69  E-value=2.9e-14  Score=139.08  Aligned_cols=269  Identities=14%  Similarity=0.085  Sum_probs=158.4

Q ss_pred             hhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 043611           46 GSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTER-RPFSHFTTKVLTLSILVGLLLGLNNLLF  123 (383)
Q Consensus        46 g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gll~a~~~~Ly  123 (383)
                      ..+...+..|.-  . +-+++.-...+.. |.++++ ++...   +++..+ +.. ..+++.+......++..+.++.+|
T Consensus        19 ~wg~~~~~~k~~--~-~~~~~~~~~~R~~~a~~~l~-~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   90 (296)
T PRK15430         19 IWGIAPAYFKLI--Y-YVPADEILTHRVIWSFFFMV-VLMSI---CRQWSYLKTL-IQTPQKIFMLAVSAVLIGGNWLLF   90 (296)
T ss_pred             HHHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHH-HHHHH---HccHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666753  2 2445555556555 776655 33322   111100 000 012344444444556677888999


Q ss_pred             HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHH
Q 043611          124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA  203 (383)
Q Consensus       124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~A  203 (383)
                      .+|++++|++..+++..+.|+|+++++++++|||++++++.++++..+|++++..+ +++         .   .++.++|
T Consensus        91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~---------~---~~~~l~a  157 (296)
T PRK15430         91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS---------L---PIIALGL  157 (296)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC---------c---cHHHHHH
Confidence            99999999999999999999999999999999999999999999999998877532 211         1   1457778


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcc---hhhh-HHHHHHH
Q 043611          204 GLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPV---VYCL-TIIGNVV  279 (383)
Q Consensus       204 a~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~---~y~l-~l~~~av  279 (383)
                      +++|++|..+.|+..++. . ........|...++... .... ...+...        +....+   .+.+ ..+.+.+
T Consensus       158 a~~~a~~~i~~r~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--------~~~~~~~~~~~~~~~g~~t~i  225 (296)
T PRK15430        158 AFSFAFYGLVRKKIAVEA-Q-TGMLIETMWLLPVAAIY-LFAI-ADSSTSH--------MGQNPMSLNLLLIAAGIVTTV  225 (296)
T ss_pred             HHHHHHHHHHHHhcCCCC-c-hhHHHHHHHHHHHHHHH-HHHH-ccCCccc--------ccCCcHHHHHHHHHHHHHHHH
Confidence            999999987776653321 1 11222222332222221 1111 1111100        101111   0011 1111222


Q ss_pred             HHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611          280 TWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKL  351 (383)
Q Consensus       280 ~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k  351 (383)
                      .+.++..+.    -+.++-..+....+.+++..+++++++||+++..+++|+++++.|++..+.+.-...||
T Consensus       226 ~~~~~~~a~----~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~~  293 (296)
T PRK15430        226 PLLCFTAAA----TRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRR  293 (296)
T ss_pred             HHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            222222111    11233334444556666679999999999999999999999999999998865544333

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.62  E-value=4.7e-13  Score=130.39  Aligned_cols=252  Identities=19%  Similarity=0.163  Sum_probs=154.2

Q ss_pred             hhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043611           53 LSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLP  131 (383)
Q Consensus        53 l~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp  131 (383)
                      ..|+-+++  -.++.-....+. +.++++ +++.     +++.+     .++|.+......|+..+..+.++.++++|+|
T Consensus        30 ~~K~~~~~--~~~~~~~~~R~~~a~l~l~-~~~~-----~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~   96 (293)
T PRK10532         30 LAKSLFPL--VGAPGVTALRLALGTLILI-AIFK-----PWRLR-----FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVP   96 (293)
T ss_pred             HHHHHHHH--cCHHHHHHHHHHHHHHHHH-HHHh-----HHhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            57766654  456666666665 555544 3321     11111     1234444455677777888888889999999


Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 043611          132 VSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYL  211 (383)
Q Consensus       132 ~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~  211 (383)
                      ++..+++..++|+|+++++.    ||.++.++  +.+..+|+.++.. ++.+.     +.....|.++.++|+++|+.|.
T Consensus        97 ~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~-~~~~~-----~~~~~~G~ll~l~aa~~~a~~~  164 (293)
T PRK10532         97 LGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLP-LGQDV-----SHVDLTGAALALGAGACWAIYI  164 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeee-cCCCc-----ccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999998873    66555544  5556777666542 21111     1124679999999999999999


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccc
Q 043611          212 PVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGM  291 (383)
Q Consensus       212 ~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGl  291 (383)
                      .+.++..++..    ...+ .+..+++..++.......++  ....+... +   ....++.++.+.+.|.+++.+.   
T Consensus       165 v~~r~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~---~~~l~lgv~~t~~~~~l~~~~~---  230 (293)
T PRK10532        165 LSGQRAGAEHG----PATV-AIGSLIAALIFVPIGALQAG--EALWHWSI-L---PLGLAVAILSTALPYSLEMIAL---  230 (293)
T ss_pred             HHHHHHhccCC----chHH-HHHHHHHHHHHHHHHHHccC--cccCCHHH-H---HHHHHHHHHHHHHHHHHHHHHH---
Confidence            99998877763    1122 23334444444422222221  10010111 0   0112334555555554444332   


Q ss_pred             eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611          292 VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG  344 (383)
Q Consensus       292 v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~  344 (383)
                       -+.++..++.+..+.++.+.+++++++||+++..+++|.++++.|...+...
T Consensus       231 -~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        231 -TRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             -HhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence             1224444555555656667999999999999999999999999888777543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.60  E-value=3.7e-13  Score=130.18  Aligned_cols=215  Identities=11%  Similarity=0.032  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC
Q 043611          105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK  184 (383)
Q Consensus       105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~  184 (383)
                      .+......|+..+..+.++..|+++.|++..+.+..++|+++++++++++|||++++++.|+++...|+.++..++.. +
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~  140 (281)
T TIGR03340        62 FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q  140 (281)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c
Confidence            333444556666677788889999999999999999999999999999999999999999999999998877643211 1


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhc
Q 043611          185 SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYD  264 (383)
Q Consensus       185 ~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~  264 (383)
                             ....|+.+.+.++++|++|..+.++..++............+..+....++..-....++. .. .+ ..   
T Consensus       141 -------~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~---  207 (281)
T TIGR03340       141 -------HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SM-FP-YA---  207 (281)
T ss_pred             -------cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hh-hH---
Confidence                   1235888899999999999887776544332101111122222222111111111111211 11 00 00   


Q ss_pred             CCcch-hhhHHHHHHHHHHHHHhhhccceeecccchhh---HHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          265 KGPVV-YCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGG---ISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       265 ~g~~~-y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~as---vv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      ...+. .++..+.+.+.+.+++.+.       +...++   ....+.++++.+++++++||+++..+++|+++++.|...
T Consensus       208 ~~~~~~~~~~~~~s~l~~~l~~~al-------~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       208 RQILPSATLGGLMIGGAYALVLWAM-------TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            00011 1122333333333322222       122222   223344555799999999999999999999999988753

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.57  E-value=2.6e-12  Score=125.28  Aligned_cols=264  Identities=9%  Similarity=-0.029  Sum_probs=150.4

Q ss_pred             hhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043611           47 SVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSW  125 (383)
Q Consensus        47 ~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~  125 (383)
                      -+.+-+..|.-.+ + -.|+..+..-.. +..+++ ++...     ++.+    +..++....   .++..+..+.+++.
T Consensus        16 Wg~~~~~~k~~~~-~-~~P~~~~~~R~~~a~l~l~-~~~~~-----~~~~----~~~~~~~~~---~~l~~~~~~~~~~~   80 (295)
T PRK11689         16 WSTMVGLIRGVSE-S-LGPVGGAAMIYSVSGLLLL-LTVGF-----PRLR----QFPKRYLLA---GGLLFVSYEICLAL   80 (295)
T ss_pred             HHHHHHHHHHHHc-c-CChHHHHHHHHHHHHHHHH-HHccc-----cccc----cccHHHHHH---HhHHHHHHHHHHHH
Confidence            3455666775332 2 456555555554 555544 33211     1111    112233322   23334455555555


Q ss_pred             hh----cCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCC--CCCcchhHHHHH
Q 043611          126 GN----SYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPD--LPKSKYFIGFFC  199 (383)
Q Consensus       126 gl----~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~--~s~~~~~iG~~l  199 (383)
                      ++    +++|++..+++.+++|+|+++++++++|||++++++.++++.++|++++..++.+.+..+  .+.+....|.++
T Consensus        81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~  160 (295)
T PRK11689         81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGL  160 (295)
T ss_pred             HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHH
Confidence            55    457888999999999999999999999999999999999999999888764432111000  011124579999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhh-HHHHHH
Q 043611          200 TVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL-TIIGNV  278 (383)
Q Consensus       200 ~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l-~l~~~a  278 (383)
                      .++|+++|++|..+.|+..++..    .+.+..   ..+.+++......+++. ..+.+.+.      +.+.+ ..+.+.
T Consensus       161 ~l~aa~~~A~~~v~~k~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~-~~~~~~~~------~~~l~~~~~~t~  226 (295)
T PRK11689        161 AFIGAFIWAAYCNVTRKYARGKN----GITLFF---ILTALALWIKYFLSPQP-AMVFSLPA------IIKLLLAAAAMG  226 (295)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCC----chhHHH---HHHHHHHHHHHHHhcCc-cccCCHHH------HHHHHHHHHHHH
Confidence            99999999999999999876653    111111   11222222222223321 11010111      11100 001111


Q ss_pred             HHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          279 VTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       279 v~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      +.+.+++.+.    -..+....+....+.++++.+++++++||+++..+++|+++++.|+.....
T Consensus       227 ~~~~l~~~al----~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        227 FGYAAWNVGI----LHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHH----HccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            1121111111    112333344445455555799999999999999999999999988766643

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.51  E-value=1.1e-12  Score=127.04  Aligned_cols=219  Identities=20%  Similarity=0.216  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 043611          109 SILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDL  188 (383)
Q Consensus       109 ~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~  188 (383)
                      .+.+|+..|.|-.+-++++.|.|+|.|++..|+.++|..+|+.++--||+++.-...+.+...|..+....+..      
T Consensus        87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq------  160 (349)
T KOG1443|consen   87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ------  160 (349)
T ss_pred             hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc------
Confidence            34678888888888889999999999999999999999999999999999999888887666666665554321      


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhh
Q 043611          189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY-----CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVY  263 (383)
Q Consensus       189 s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~-----~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F  263 (383)
                         -...|+.++++|+++.|+.+++.|...|+-.     ++..+..+|-|+++   .+...++..||....+..+.-.++
T Consensus       161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~~s~~f~~~  234 (349)
T KOG1443|consen  161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLITSSSIFRFQ  234 (349)
T ss_pred             ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccchhhhHHHhc
Confidence               2578999999999999999999999999975     45667777777753   334467778886543323222102


Q ss_pred             cCCcchhhhHHHHHHHH-HHHHHhh--hccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          264 DKGPVVYCLTIIGNVVT-WQLCFMG--TAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       264 ~~g~~~y~l~l~~~av~-wq~~~vg--~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      +.+.  .+.++.-.... ...+.++  -.-+.-.+|+++.++....++..+.++|.+..+|.++.....|+.+++.|...
T Consensus       235 d~~~--~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~  312 (349)
T KOG1443|consen  235 DTGL--ILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILL  312 (349)
T ss_pred             CccH--HHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHH
Confidence            2221  11111111100 0111111  11123356899999999999999999999999999999999999999999998


Q ss_pred             H
Q 043611          341 Y  341 (383)
Q Consensus       341 y  341 (383)
                      |
T Consensus       313 ~  313 (349)
T KOG1443|consen  313 H  313 (349)
T ss_pred             h
Confidence            7

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.50  E-value=7.7e-13  Score=131.02  Aligned_cols=313  Identities=20%  Similarity=0.232  Sum_probs=205.6

Q ss_pred             cchHHHHHHHHHHHHHhhhhhHhhhhHhhcCCC-cchhHHHHHHHhhhhhhhhhhhcc----ccccccCCC---------
Q 043611           30 KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKG-SSRWVSTWVQCAGFPLLLPPIFLP----YYLFKCTER---------   95 (383)
Q Consensus        30 ~~~~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg-~~~w~~t~vq~~g~plll~~~~~~----~~~~~~~~~---------   95 (383)
                      ++||.+.+++..++.+-=.+++-|.++-|+.+. ++|+..|.+-++-|-+-++|+.+-    ++..+|+++         
T Consensus         9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~   88 (416)
T KOG2765|consen    9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA   88 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence            334567777777777888899999999999986 589999999999998888765521    111111000         


Q ss_pred             --------------------------------------CC-----------C--CC--------cch-HHHHHHHHHHHH
Q 043611           96 --------------------------------------RP-----------F--SH--------FTT-KVLTLSILVGLL  115 (383)
Q Consensus        96 --------------------------------------~~-----------~--~~--------~~~-~~~~~~~~~Gll  115 (383)
                                                            ++           .  .+        ++. +..-.+...-.+
T Consensus        89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l  168 (416)
T KOG2765|consen   89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL  168 (416)
T ss_pred             hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence                                                  00           0  01        111 233344445555


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhH
Q 043611          116 LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFI  195 (383)
Q Consensus       116 ~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~i  195 (383)
                      --+.|+.|+.++.|+.++..+++-++.-+||..++.++..||+|+..++++.+-..|++++..++... .++...++..+
T Consensus       169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-~~~~~a~~~ll  247 (416)
T KOG2765|consen  169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-NSDLPASRPLL  247 (416)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-cccCCccchhH
Confidence            55677999999999999999999999999999999999999999999999997777777766665432 23344456789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC----ccchhHhhhhcCCcchhh
Q 043611          196 GFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYP----EMKREAQTVYDKGPVVYC  271 (383)
Q Consensus       196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~----~i~~e~~~~F~~g~~~y~  271 (383)
                      |.++.+.+|++||+|..+-++-..+...-..+-.+..+++++..+++-=.+++-..+.    ++|..    . +......
T Consensus       248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~----~-q~~~vv~  322 (416)
T KOG2765|consen  248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSS----T-QFSLVVF  322 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCC----c-eeEeeeH
Confidence            9999999999999998877765555421122323334444433322221111111111    12110    0 1101111


Q ss_pred             hHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611          272 LTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKL  351 (383)
Q Consensus       272 l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k  351 (383)
                      ..+.++.++=-++..++    ..+|++.+.+-+++-.|++.+.-+++=|.++++..++|...++.||....|....++++
T Consensus       323 ~~ligtvvSDylW~~a~----~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~  398 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAV----LLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKD  398 (416)
T ss_pred             hhHHHHHHHHHHHHHHH----HhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccc
Confidence            12344433222222222    23466667777888899999999999999999999999999999999888876655554


Q ss_pred             H
Q 043611          352 Q  352 (383)
Q Consensus       352 ~  352 (383)
                      +
T Consensus       399 ~  399 (416)
T KOG2765|consen  399 P  399 (416)
T ss_pred             c
Confidence            3

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.49  E-value=1.1e-10  Score=110.46  Aligned_cols=210  Identities=17%  Similarity=0.293  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHH-HHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 043611          110 ILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSV-IIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDL  188 (383)
Q Consensus       110 ~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~-~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~  188 (383)
                      ...++..+..+.+|..+++|+|++..+++.++.|+|+++++. +++|||++++++.++++..+|+.++...+..+.    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~----  149 (292)
T COG0697          74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG----  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch----
Confidence            334455557778898999999999999999999999999996 777999999999999988999877775544211    


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc
Q 043611          189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQL-VMEIAATALATVGMASDGGYPEMKREAQTVYDKGP  267 (383)
Q Consensus       189 s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~-~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~  267 (383)
                      . . +..|..+.+.+++.++++....++.. +..    ...+.. +..+ ........... .+.. .+.+...    -.
T Consensus       150 ~-~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~----~~  215 (292)
T COG0697         150 I-L-SLLGLLLALAAALLWALYTALVKRLS-RLG----PVTLALLLQLL-LALLLLLLFFL-SGFG-APILSRA----WL  215 (292)
T ss_pred             h-H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC----hHHHHHHHHHH-HHHHHHHHHHh-cccc-ccCCHHH----HH
Confidence            0 0 57899999999999999888888776 432    111111 1211 11111111111 1111 1111111    00


Q ss_pred             chhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHh--hHHHH-HHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611          268 VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMT--AILAM-NVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG  344 (383)
Q Consensus       268 ~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~--l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~  344 (383)
                      ..-+..+..+.+.+.+...+       .+...++.+..  ..+|+ ..+++++++||+++..+++|..+++.|.....++
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYA-------LRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            00000111111222221111       12223333322  44555 5667999999999999999999999888877664

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=9.3e-14  Score=132.72  Aligned_cols=213  Identities=19%  Similarity=0.219  Sum_probs=159.1

Q ss_pred             HHHHHHhhcC-CChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC-C------CC---C
Q 043611          120 NLLFSWGNSY-LPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK-S------PD---L  188 (383)
Q Consensus       120 ~~Ly~~gl~y-lp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~-~------~~---~  188 (383)
                      |.+-++++++ +|...+-++++..++-|++.+++++|+|++.+|+.|++++|+|+++-.+.++.|. .      .+   .
T Consensus        78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~  157 (330)
T KOG1583|consen   78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQS  157 (330)
T ss_pred             eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccc
Confidence            3555688888 8888899999999999999999999999999999999999999888766554331 1      11   1


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc-
Q 043611          189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP-  267 (383)
Q Consensus       189 s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~-  267 (383)
                      ....-.+|+.+...|.++.|......|..|||+.  .+.-|...|.-+.+....+.    .++  ++..+.+. ...++ 
T Consensus       158 ~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalFytH~LsLP~Flf----~~~--div~~~~~-~~~se~  228 (330)
T KOG1583|consen  158 DFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALFYTHFLSLPLFLF----MGD--DIVSHWRL-AFKSES  228 (330)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHhccchHHH----hcc--hHHHHHHH-HhcCcc
Confidence            2223467999999999999999999999999996  33444444443322222211    122  23233322 11111 


Q ss_pred             ----------chhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHH
Q 043611          268 ----------VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWG  337 (383)
Q Consensus       268 ----------~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G  337 (383)
                                ++-+.-+..+.+..-.|.-|+--+....+|++.+++.++|.-+..+++++.|.+++++..++|..++..|
T Consensus       229 ~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~G  308 (330)
T KOG1583|consen  229 YLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFG  308 (330)
T ss_pred             eeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHH
Confidence                      2223335556667777888888888889999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q 043611          338 FCSY  341 (383)
Q Consensus       338 ~~~y  341 (383)
                      ...|
T Consensus       309 t~~f  312 (330)
T KOG1583|consen  309 TLLF  312 (330)
T ss_pred             HHHH
Confidence            8887

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.39  E-value=2.2e-10  Score=111.93  Aligned_cols=222  Identities=13%  Similarity=0.121  Sum_probs=146.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHh-hhHHHHHHHHHHHhccccchhH----HHHHHHHHHHHHHhc
Q 043611          103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLS-SQLLFNLVFSVIIVKQKITFSN----LNCVILLTLSSVLLA  177 (383)
Q Consensus       103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~s-sql~Ftaifs~~ilkeK~t~~~----i~svvLltiG~vll~  177 (383)
                      ++.+...+..|++.+..|.+|..+.+|+.+|+...+.+ .|++++++++.+++|||.++++    +.|+++..+|.++++
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            57788889999999999999999999999999999988 9999999999999999999999    999999999988887


Q ss_pred             ccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 043611          178 LGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKR  257 (383)
Q Consensus       178 ~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~  257 (383)
                      ..++++.. +.++.++..|+++.+.|++.|+.|....|..  ++.++...+ .|.+.-+++..+..... . .. ++.+.
T Consensus       136 ~~~~~~~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~-~~~~g~~~~~~~~~~~~-~-~~-~~~~~  208 (290)
T TIGR00776       136 RSKDKSAG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLL-PQAIGMVIGGIIFNLGH-I-LA-KPLKK  208 (290)
T ss_pred             eccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehh-HHHHHHHHHHHHHHHHH-h-cc-cchHH
Confidence            65432111 0110223569999999999999999999865  232111110 13332222222222111 0 00 11100


Q ss_pred             hHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhH----HHHHH
Q 043611          258 EAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKA----VSTVL  333 (383)
Q Consensus       258 e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~ki----ig~~L  333 (383)
                        +.    .......-++| .+....+..+.-+   +.+.-.+.+++.+.+.++.+.+++++||+.+..++    +|.++
T Consensus       209 --~~----~~~~~~~Gi~~-~ia~~~y~~~~~~---~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~l  278 (290)
T TIGR00776       209 --YA----ILLNILPGLMW-GIGNFFYLFSAQP---KVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIIL  278 (290)
T ss_pred             --HH----HHHHHHHHHHH-HHHHHHHHHHccc---ccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHH
Confidence              00    00000001111 2222223333321   33444455666666555799999999999999999    99999


Q ss_pred             HHHHHHHH
Q 043611          334 CAWGFCSY  341 (383)
Q Consensus       334 ~l~G~~~y  341 (383)
                      ++.|....
T Consensus       279 Ii~~~~l~  286 (290)
T TIGR00776       279 IIIAANIL  286 (290)
T ss_pred             HHHHHHHH
Confidence            99887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=99.33  E-value=2.5e-10  Score=108.64  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=112.6

Q ss_pred             HHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcch-HHHHHHHHHHHHHH
Q 043611           40 YLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTT-KVLTLSILVGLLLG  117 (383)
Q Consensus        40 ~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Gll~a  117 (383)
                      .++-.+..+.+.+..|. .. + -+++...+.... |.++++ ++...+ .+++..++..++.++ +++......|++.+
T Consensus         7 ~i~a~~~wg~~~~~~k~-~~-~-~~~~~i~~~R~~~a~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   81 (256)
T TIGR00688         7 SLLASFLFGYMYYYSKL-LK-P-LPATDILGHRMIWSFPFML-LSVTLF-RQWAALIERLKRIQKRPLILSLLLCGLLIG   81 (256)
T ss_pred             HHHHHHHHHHHHHHHHH-hc-c-CCHHHHHHHHHHHHHHHHH-HHHHHH-cchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            33344456777888886 22 2 566666666665 666554 333221 111100011111112 33555667788888


Q ss_pred             HHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHH
Q 043611          118 LNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGF  197 (383)
Q Consensus       118 ~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~  197 (383)
                      .++.+|.+|++|+|++.++++.++.|+|+++++.+++|||++++++.++++..+|++++..+ +++.        .    
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~~--------~----  148 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGSL--------P----  148 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCCc--------h----
Confidence            89999999999999999999999999999999999999999999999999999998877532 2110        1    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 043611          198 FCTVGAGLLFALYLPVMEMIYK  219 (383)
Q Consensus       198 ~l~L~Aa~l~gl~~~l~q~~~k  219 (383)
                      .+.++++++|++|....|+..+
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCC
Confidence            3578899999999888877654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.8e-10  Score=110.24  Aligned_cols=290  Identities=18%  Similarity=0.166  Sum_probs=206.3

Q ss_pred             cchHHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcc--hhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHH
Q 043611           30 KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSS--RWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLT  107 (383)
Q Consensus        30 ~~~~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~--~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (383)
                      +.+|.--.+.+.....++-..-.+..+-|+..|=|  -|--|++|+.--..+-...+..  .+.+++..|   |  |   
T Consensus        38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~--~~~k~r~iP---~--r---  107 (367)
T KOG1582|consen   38 KPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL--IQTKRRVIP---W--R---  107 (367)
T ss_pred             CchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe--ecccceecc---h--h---
Confidence            55566666677778889999999999999998866  4999999987332221101111  111111112   2  2   


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCC
Q 043611          108 LSI-LVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSP  186 (383)
Q Consensus       108 ~~~-~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~  186 (383)
                      .|. +.++++|.+ -|-.-++.|++-.+-.+..+++++=+++.+.|+=++|+.+..+.+..++.+|.++..+.|..    
T Consensus       108 tY~~la~~t~gtm-GLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~----  182 (367)
T KOG1582|consen  108 TYVILAFLTVGTM-GLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQ----  182 (367)
T ss_pred             HhhhhHhhhhhcc-ccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccc----
Confidence            222 233444444 55568888998888999999999999999999999999999999999999998888776542    


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCC
Q 043611          187 DLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKG  266 (383)
Q Consensus       187 ~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g  266 (383)
                       .+..-..+|..++-+|-+.=|+..=+.|+.+++..  ....||..+..-++..++.+.+...||.-   . +-.++-+-
T Consensus       183 -~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~--~ss~EmvfySy~iG~vflf~~mvlTge~f---~-a~~fcaeh  255 (367)
T KOG1582|consen  183 -TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP--ASSSEMVFYSYGIGFVFLFAPMVLTGELF---S-AWTFCAEH  255 (367)
T ss_pred             -cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC--CCcceEEEeeecccHHHHHHHHHhcccch---h-hhHHHHhC
Confidence             22223568999999999999999889999999985  33478888888888888889998888741   1 11112222


Q ss_pred             cchhhhHHHHHHHHHHH-HHhh---hccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611          267 PVVYCLTIIGNVVTWQL-CFMG---TAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV  342 (383)
Q Consensus       267 ~~~y~l~l~~~av~wq~-~~vg---~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi  342 (383)
                      ++.-+-.    ++...+ .++|   +..++...++..+..|-+.+..++.++++++|-.+++-...-|+.+++.|+...+
T Consensus       256 p~~tyGy----~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~  331 (367)
T KOG1582|consen  256 PVRTYGY----AFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNM  331 (367)
T ss_pred             cHhHHHH----HHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhc
Confidence            2211111    111111 2233   3333444577788888999999999999999999999999999999999998888


Q ss_pred             hhc
Q 043611          343 YGM  345 (383)
Q Consensus       343 y~~  345 (383)
                      |.+
T Consensus       332 ysk  334 (367)
T KOG1582|consen  332 YSK  334 (367)
T ss_pred             ccC
Confidence            865

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.26  E-value=9.1e-11  Score=102.54  Aligned_cols=147  Identities=16%  Similarity=0.136  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhc-C--Ccch
Q 043611          196 GFFCTVGAGLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYD-K--GPVV  269 (383)
Q Consensus       196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~---~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~-~--g~~~  269 (383)
                      |+++++.|+++.+++.++.|+.+++..   .....++++.+.+..+.+++....+..++++..+...+. ++ +  ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~   79 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEI-FGEELSSDPN   79 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh-hhhhhcchHH
Confidence            789999999999999999999999941   346799999999999999999776666654422222221 11 1  1234


Q ss_pred             hhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          270 YCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       270 y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      ....+..+.+.+.+.+.....++..+|+++-+++..++.+++.++++++|||+++..+++|.++++.|+..|.|
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            55566777778888888888888899999999999999999999999999999999999999999999998865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.24  E-value=1.6e-11  Score=121.16  Aligned_cols=289  Identities=16%  Similarity=0.143  Sum_probs=177.7

Q ss_pred             HHHHHHH-HHHHHHhhhhhHhhhhHhhcC-CCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHH
Q 043611           33 LVLLVTN-YLCLFVGSVSASLLSKYYFNH-KGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSI  110 (383)
Q Consensus        33 ~~~~~~~-~~~l~~g~~~~~Ll~r~y~~~-gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (383)
                      +.+.... +..=......-.++.|.=.++ |.+-||.-|.++++---+.....-..+ ..++.+.++     +.-+.--+
T Consensus        14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~~~~~-----~~~~~~ll   87 (316)
T KOG1441|consen   14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPSKISS-----KLPLRTLL   87 (316)
T ss_pred             hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCCcccc-----ccchHHHH
Confidence            4444444 444444444444444444444 778899999987762222221111121 111111111     11233334


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 043611          111 LVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPK  190 (383)
Q Consensus       111 ~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~  190 (383)
                      .+|+..+..+.+-+.++.|.|+|.+.++.++.|+|+.++++++.+|++++....+++....|+.+-...+.         
T Consensus        88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---------  158 (316)
T KOG1441|consen   88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---------  158 (316)
T ss_pred             HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---------
Confidence            56777667777778999999999999999999999999999999999999999999877777555544332         


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH--HhcCCCCccchhHhhhhcCCcc
Q 043611          191 SKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGM--ASDGGYPEMKREAQTVYDKGPV  268 (383)
Q Consensus       191 ~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl--~~~g~~~~i~~e~~~~F~~g~~  268 (383)
                      +-...|++.++.+-+.++++..+.+...++-.--...+++--+++-++.+.+++-.  ..+++ ... .     +..+.|
T Consensus       159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~-~~~-~-----~~~~~~  231 (316)
T KOG1441|consen  159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN-KFV-G-----FLTAPW  231 (316)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc-cee-e-----eecccc
Confidence            23689999999999999999999999985321113466666666555554444321  11121 000 0     122222


Q ss_pred             hhh-hHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          269 VYC-LTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       269 ~y~-l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      .+- ..+..+.+..-+++....-++-.+|.++=++....+-.++.+.++++|+|+.++.++.|..+++.|...|-+
T Consensus       232 ~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  232 FVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            211 111111121111222222223345666667776677777788889999999999999999999977666544

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.21  E-value=5.3e-09  Score=101.27  Aligned_cols=215  Identities=17%  Similarity=0.180  Sum_probs=145.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611          101 FTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS  180 (383)
Q Consensus       101 ~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~  180 (383)
                      .+||.+....+.+++++.|-.+|.++.++=-+--.|+=.--+|.++.+++.+++|||+++.|+++++++.+|+....++.
T Consensus        67 ~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          67 KQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            45688999999999999999999999998666666788888999999999999999999999999999999999888776


Q ss_pred             CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 043611          181 GHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKR  257 (383)
Q Consensus       181 ~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~---~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~  257 (383)
                      ++-         .++.    ++=++.|++|..    .+|++.   -....+|+.....     ++.+-++...+-.+   
T Consensus       147 g~l---------pwva----l~la~sf~~Ygl----~RK~~~v~a~~g~~lE~l~l~p-----~al~yl~~l~~~~~---  201 (293)
T COG2962         147 GSL---------PWVA----LALALSFGLYGL----LRKKLKVDALTGLTLETLLLLP-----VALIYLLFLADSGQ---  201 (293)
T ss_pred             CCC---------cHHH----HHHHHHHHHHHH----HHHhcCCchHHhHHHHHHHHhH-----HHHHHHHHHhcCch---
Confidence            532         2333    334557888743    344443   2345666655443     23322222222111   


Q ss_pred             hHhhhhcCCcchhhh----HHHHHHHHHHHHHhhhccceeecccchhhH---HHhhHHHHHHHHHHHHhCCcchhhhHHH
Q 043611          258 EAQTVYDKGPVVYCL----TIIGNVVTWQLCFMGTAGMVFLTSSLTGGI---SMTAILAMNVIAGVVVYGDSFGGVKAVS  330 (383)
Q Consensus       258 e~~~~F~~g~~~y~l----~l~~~av~wq~~~vg~vGlv~~~Ssl~asv---v~~l~~pv~~ilAvi~fgE~~~~~kiig  330 (383)
                       +   .........+    .=..+++...++..+.       ..+.-++   ..-+.+.+..++|+.++||+++..|.++
T Consensus       202 -~---~~~~~~~~~~LLv~aG~vTavpL~lf~~aa-------~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~  270 (293)
T COG2962         202 -F---LQQNANSLWLLLVLAGLVTAVPLLLFAAAA-------KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT  270 (293)
T ss_pred             -h---hhcCCchHHHHHHHhhHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence             0   1111121111    1222444444444443       2333333   3446666679999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhhhh
Q 043611          331 TVLCAWGFCSYVYGMYVKLKL  351 (383)
Q Consensus       331 ~~L~l~G~~~yiy~~~~~~~k  351 (383)
                      .+++-.|...|...+..+.+|
T Consensus       271 F~~IW~aL~l~~~d~l~~~r~  291 (293)
T COG2962         271 FAFIWLALALFSIDGLYTARK  291 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998876554444

>TIGR00803 nst UDP-galactose transporter

Probab=98.95  E-value=1.3e-08  Score=95.19  Aligned_cols=214  Identities=11%  Similarity=0.011  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 043611          113 GLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK  192 (383)
Q Consensus       113 Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~  192 (383)
                      ..++.-+|.+...++.+.++...... +.|.+.++++...+++.+++..|+.++.++..|......++..++  ....+.
T Consensus         6 a~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~--~~~~g~   82 (222)
T TIGR00803         6 IHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK--TLMFGN   82 (222)
T ss_pred             chHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc--cccccc
Confidence            34455566555577777777777777 777778888887778888888877777777776555544432211  122345


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchh
Q 043611          193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVY--CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVY  270 (383)
Q Consensus       193 ~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~--~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y  270 (383)
                      ...|..+.+++....++-....|+.+|+..  .|...+++..+....    ...+....+ ....+.  .. |.++....
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~--~~-~~~~~~~~  154 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFS----TFSVLLWSD-GTLISN--FG-FFIGYPTA  154 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHH----HHHHHhhcc-cchhhc--cC-cccCCchH
Confidence            788999999999999998888888877653  233444444444321    123332222 111111  11 22222211


Q ss_pred             hhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          271 CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       271 ~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      ...++.+.   .+....+.....+.++...+++.+++..++.++++++|||+++..+.+|..+++.|...
T Consensus       155 ~~~~~~~~---a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLN---VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHH---HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            11111110   00011122223456788888899999999999999999999999999999999976544

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.94  E-value=5e-08  Score=94.91  Aligned_cols=223  Identities=16%  Similarity=0.186  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCC
Q 043611          108 LSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPD  187 (383)
Q Consensus       108 ~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~  187 (383)
                      -+..+++.--....+-..+++|++--|..+-.+++.+=+++...++-|+|++.+......+.++|+.+..+.+.+|.+.+
T Consensus        85 ~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~  164 (327)
T KOG1581|consen   85 KYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSK  164 (327)
T ss_pred             HHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccc
Confidence            34455555445556666999999999999999999999999999999999999999999999999888888776553333


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc
Q 043611          188 LPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP  267 (383)
Q Consensus       188 ~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~  267 (383)
                      ..+.+.+.|+.+..+--++=|+-..--..+++++.  ....+|...+.++.++...++++..|.+.    ++-+ |-.--
T Consensus       165 ~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k--~s~~~mM~~vNLf~~i~~~~~li~qg~~~----~av~-F~~~h  237 (327)
T KOG1581|consen  165 SGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYK--VSSLHMMFGVNLFSAILNGTYLILQGHLL----PAVS-FIKEH  237 (327)
T ss_pred             cCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCC--ccHhHHHHHHHHHHHHHHHHhhhcCCCCc----hHHH-HHHcC
Confidence            33345789999998888877776555666666654  55778888888998999999987777653    1222 32111


Q ss_pred             chhhhHHHHHHHHHHHHHhhhcccee--ec----ccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611          268 VVYCLTIIGNVVTWQLCFMGTAGMVF--LT----SSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY  341 (383)
Q Consensus       268 ~~y~l~l~~~av~wq~~~vg~vGlv~--~~----Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y  341 (383)
                      ..    ..+..+.+  +..|.+|..|  ++    +++.-..|.+.|..++.+++.+.||.+++..|++|..+++.|...=
T Consensus       238 p~----~~~Di~l~--s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  238 PD----VAFDILLY--STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE  311 (327)
T ss_pred             hh----HHHHHHHH--HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence            10    23333333  3367777744  43    5666666788999999999999999999999999999998665544


Q ss_pred             Hh
Q 043611          342 VY  343 (383)
Q Consensus       342 iy  343 (383)
                      +|
T Consensus       312 ~~  313 (327)
T KOG1581|consen  312 IL  313 (327)
T ss_pred             HH
Confidence            44

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.5e-08  Score=94.06  Aligned_cols=202  Identities=15%  Similarity=0.195  Sum_probs=149.6

Q ss_pred             HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHH
Q 043611          124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA  203 (383)
Q Consensus       124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~A  203 (383)
                      +.+++|.|-.|..+=.|++|+=+++++.++.+++++|+....+.+..+|+++.--.+.  +..+.+++...+|=++.+.+
T Consensus       103 N~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~--Kv~g~e~~t~g~GElLL~lS  180 (337)
T KOG1580|consen  103 NQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN--KVGGAEDKTFGFGELLLILS  180 (337)
T ss_pred             cchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc--ccCCCcccccchHHHHHHHH
Confidence            3889999999999999999999999999999999999999999888888776654432  22344445567899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC-CcchhhhHHHHHHHHHH
Q 043611          204 GLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK-GPVVYCLTIIGNVVTWQ  282 (383)
Q Consensus       204 a~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~-g~~~y~l~l~~~av~wq  282 (383)
                      -.+=|+-.++.++..+.+-  ...-+|..++.+++++.+.+|++..||..    |.-. |.+ .+.     ..|+.....
T Consensus       181 L~mDGlTg~~Qdrira~yq--~~g~~MM~~~NlwStL~Lg~g~lfTGElw----eF~y-F~~RhP~-----~~~~l~l~a  248 (337)
T KOG1580|consen  181 LAMDGLTGSIQDRIRASYQ--RTGTSMMFYTNLWSTLYLGAGLLFTGELW----EFFY-FVQRHPY-----VFWDLTLLA  248 (337)
T ss_pred             HHhcccchhHHHHHHHhhc--cCchhhHHHHHHHHHHHhhhhheehhhHH----HHHH-HHHhccH-----HHHHHHHHH
Confidence            9999998888888877774  22334556677788888889998888742    3222 221 111     122211111


Q ss_pred             HHHhhhccceee------cccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611          283 LCFMGTAGMVFL------TSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY  341 (383)
Q Consensus       283 ~~~vg~vGlv~~------~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y  341 (383)
                        .-++.|.++.      -+-++-+++-+-+.-.+.+.++++|++++++.|++|.++++.|...=
T Consensus       249 --i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  249 --IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             --HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence              1334444331      25667788888899999999999999999999999999999776554

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.72  E-value=2.7e-08  Score=83.81  Aligned_cols=75  Identities=25%  Similarity=0.379  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHH-HHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611          107 TLSILVGLLLG-LNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH  182 (383)
Q Consensus       107 ~~~~~~Gll~a-~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~  182 (383)
                      ......|++.+ .++.+|.+|++|.| +..+.+.+++++|+++++.+++|||++++++.++++.++|++++..++.+
T Consensus        35 ~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   35 LWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            34445565554 77899999999999 58889999999999999999999999999999999999999999987653

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.72  E-value=1.1e-07  Score=79.03  Aligned_cols=119  Identities=19%  Similarity=0.296  Sum_probs=84.9

Q ss_pred             hhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH-HHHHHHHHHHhh
Q 043611           49 SASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL-LGLNNLLFSWGN  127 (383)
Q Consensus        49 ~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll-~a~~~~Ly~~gl  127 (383)
                      ....+.|...++ -+..++..+-...+.+ +++.....  .+++     ....+++.+......|++ .+..+.+|..++
T Consensus         5 ~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    5 IYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL--GRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             eHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh--cccc-----ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            345566666665 2444555555555666 44322222  1111     122334555555666655 577889999999


Q ss_pred             cCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 043611          128 SYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLL  176 (383)
Q Consensus       128 ~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll  176 (383)
                      +++|++..+++..++|+++++++++++|||++++++.|+++..+|.+++
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888887765

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.4e-08  Score=97.61  Aligned_cols=227  Identities=22%  Similarity=0.283  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC
Q 043611          105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK  184 (383)
Q Consensus       105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~  184 (383)
                      .+-.+++.=.+++.+|    +.++|.|++-|.+=++.-++||.+++|.++|||-+..-..+..+..+| ..+|++..   
T Consensus       105 vlplsvVfi~mI~fnn----lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G-F~lGvdqE---  176 (347)
T KOG1442|consen  105 VLPLSVVFILMISFNN----LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG-FGLGVDQE---  176 (347)
T ss_pred             hcchhheeeeehhccc----eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh-heeccccc---
Confidence            4445555556666777    667999999999999999999999999999999998888877644433 44444432   


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhc
Q 043611          185 SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYD  264 (383)
Q Consensus       185 ~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~  264 (383)
                        +.++.-.+.|.+.-+.|++.-++-.+..++..-.+  -.-+-.+..+..+.|.++.+-.+++.||+..+    .. |.
T Consensus       177 --~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v--~~~iw~lt~ynnv~a~lLflpll~lnge~~~v----~~-~~  247 (347)
T KOG1442|consen  177 --GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV--GDCIWRLTAYNNVNALLLFLPLLILNGEFQAV----VG-FP  247 (347)
T ss_pred             --cccCccchhhhHHHHHHHHHHHHHHHhhheecccc--cCeehhhHHHHHHHHHHHHHHHHHHcchHHHH----cC-cc
Confidence              22333357899999999999988443343222222  12355566677778888888778888987643    22 44


Q ss_pred             CCc-chhhhHHHH-HHHHHHHHHhh-hccc-eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          265 KGP-VVYCLTIIG-NVVTWQLCFMG-TAGM-VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       265 ~g~-~~y~l~l~~-~av~wq~~~vg-~vGl-v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      +-+ +.++..+.. ..+.   +.+| ++|. +..+|.++-++--+.+-..-.++|+.+++|.-++..+-|-++++.|...
T Consensus       248 ~l~a~~Fw~~mtLsglfg---F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~  324 (347)
T KOG1442|consen  248 HLPAIKFWILMTLSGLFG---FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA  324 (347)
T ss_pred             cchHHHHHHHHHHHHHHH---HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence            442 222222111 1111   2333 3444 4457888888888888888899999999999999999999999999998


Q ss_pred             HHhhcchhhhh
Q 043611          341 YVYGMYVKLKL  351 (383)
Q Consensus       341 yiy~~~~~~~k  351 (383)
                      |.+-+-.+++|
T Consensus       325 YT~vk~~em~~  335 (347)
T KOG1442|consen  325 YTLVKEHEMRK  335 (347)
T ss_pred             HHHHHHHHHHh
Confidence            87754333333

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.67  E-value=3.4e-07  Score=84.55  Aligned_cols=209  Identities=16%  Similarity=0.243  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKY  193 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~  193 (383)
                      ++--+.|++|-.+++.+++|..+-+.+++-+|+-+++++.+|+|+.-.++.+.+++.-|+++++-.+.       ..+..
T Consensus        61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-------~~a~e  133 (290)
T KOG4314|consen   61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-------EHADE  133 (290)
T ss_pred             EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-------hhhhh
Confidence            33346789999999999999999999999999999999999999999999999988888777763321       11337


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc
Q 043611          194 FIGFFCTVGAGLLFALYLPVMEMIYKKVY---CY---SMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP  267 (383)
Q Consensus       194 ~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~---~~---~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~  267 (383)
                      ++|+.++++++...++|    +.+||+..   .+   .+.+.-..+..+.-..+-.+-+...|.     +...+ |...+
T Consensus       134 ~iGi~~AV~SA~~aAlY----KV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V-----E~~qs-FA~~P  203 (290)
T KOG4314|consen  134 IIGIACAVGSAFMAALY----KVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV-----EHLQS-FAAAP  203 (290)
T ss_pred             hhhHHHHHHHHHHHHHH----HHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch-----HHHHH-HhhCC
Confidence            89999999999999997    66777764   11   122111111111111111111111221     00222 44443


Q ss_pred             chhhhHHHHHHHHHHHHHhhh-ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          268 VVYCLTIIGNVVTWQLCFMGT-AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       268 ~~y~l~l~~~av~wq~~~vg~-vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      |.   .+.+.+..|..++.-+ +|+ ..+.-+.-++=..++.|.....-.++=+-.++...+.|..++.+|+...+.
T Consensus       204 WG---~l~G~A~L~lAFN~~iN~Gi-aL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii  276 (290)
T KOG4314|consen  204 WG---CLCGAAGLSLAFNFLINFGI-ALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII  276 (290)
T ss_pred             ch---hhhhHHHHHHHHhhheeehh-hhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence            31   2344455555544332 111 111111112223355666666666666777888999999999999887765

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.65  E-value=2e-08  Score=96.26  Aligned_cols=210  Identities=17%  Similarity=0.143  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC--CCC
Q 043611          106 LTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS--GHD  183 (383)
Q Consensus       106 ~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~--~~~  183 (383)
                      +.+=...|.+  +...+| +++.|+|.+=++++.-+.|.||++|++.++|||+|++...+..+...|++++.=.+  ++|
T Consensus       100 LiLRg~mG~t--gvmlmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~  176 (346)
T KOG4510|consen  100 LILRGFMGFT--GVMLMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD  176 (346)
T ss_pred             EEeehhhhhh--HHHHHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC
Confidence            3333445555  444777 99999999999999999999999999999999999999999987777766654222  222


Q ss_pred             CCC--CCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHh
Q 043611          184 KSP--DLPK-SKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQ  260 (383)
Q Consensus       184 ~~~--~~s~-~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~  260 (383)
                      +..  +.+. ....-|-...+.+...-+-..++-+..=|+.. +.+  .+ -|-++++.+..++|...-|+++ +|+--+
T Consensus       177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~m--sv-syf~~i~lV~s~I~~~~ig~~~-lP~cgk  251 (346)
T KOG4510|consen  177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIM--SV-SYFSLITLVVSLIGCASIGAVQ-LPHCGK  251 (346)
T ss_pred             CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEE--Ee-hHHHHHHHHHHHHHHhhcccee-cCcccc
Confidence            211  1111 11223444444444433333344455555552 111  11 1234566667777776667763 665333


Q ss_pred             hhhcCCcchhhhHHHHHHHHHHH-HHhhhccceeecccchhhH--HHhhHHHH-HHHHHHHHhCCcchhhhHHHHHHHHH
Q 043611          261 TVYDKGPVVYCLTIIGNVVTWQL-CFMGTAGMVFLTSSLTGGI--SMTAILAM-NVIAGVVVYGDSFGGVKAVSTVLCAW  336 (383)
Q Consensus       261 ~~F~~g~~~y~l~l~~~av~wq~-~~vg~vGlv~~~Ssl~asv--v~~l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~  336 (383)
                      +      +..+..+...-+.-|+ .-+|.       ..--+|-  +.+..-.+ +.+..+++|||.++++.++|+++++.
T Consensus       252 d------r~l~~~lGvfgfigQIllTm~l-------QiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs  318 (346)
T KOG4510|consen  252 D------RWLFVNLGVFGFIGQILLTMGL-------QIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS  318 (346)
T ss_pred             c------eEEEEEehhhhhHHHHHHHHHh-------hhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence            2      2222223222333333 11111       1111111  22223333 57888999999999999999999883

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.64  E-value=8.3e-06  Score=77.95  Aligned_cols=240  Identities=17%  Similarity=0.168  Sum_probs=142.5

Q ss_pred             hhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 043611           54 SKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVS  133 (383)
Q Consensus        54 ~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~S  133 (383)
                      .|--|-+-|  +|-.|++-.+--.+.+.+++=+  +++|        ++++.+..-..+|+.++..|++|..++..+|.+
T Consensus        31 Ak~LFP~vG--~~g~t~lRl~~aaLIll~l~RP--wr~r--------~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlG   98 (292)
T COG5006          31 AKSLFPLVG--AAGVTALRLAIAALILLALFRP--WRRR--------LSKPQRLALLAYGVSLGGMNLLFYLSIERIPLG   98 (292)
T ss_pred             HHHHccccC--hhhHHHHHHHHHHHHHHHHhhH--HHhc--------cChhhhHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            444455533  3446666666333333233222  2221        334455666779999999998888999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 043611          134 TSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPV  213 (383)
Q Consensus       134 t~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l  213 (383)
                      +..-+--+.++-.++++    .+|..-..|.++  +..|..++.-...+.      ..-..+|..++++|.++|++|...
T Consensus        99 iAVAiEF~GPL~vA~~~----sRr~~d~vwvaL--AvlGi~lL~p~~~~~------~~lDp~Gv~~Al~AG~~Wa~YIv~  166 (292)
T COG5006          99 IAVAIEFTGPLAVALLS----SRRLRDFVWVAL--AVLGIWLLLPLGQSV------WSLDPVGVALALGAGACWALYIVL  166 (292)
T ss_pred             hhhhhhhccHHHHHHHh----ccchhhHHHHHH--HHHHHHhheeccCCc------CcCCHHHHHHHHHHhHHHHHHHHH
Confidence            99888888887776654    455555556555  566766665333211      122579999999999999999999


Q ss_pred             HHHHHHhhc-cchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcc---hhhhHHHHHHHHHHHHHhhh
Q 043611          214 MEMIYKKVY-CYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPV---VYCLTIIGNVVTWQLCFMGT  288 (383)
Q Consensus       214 ~q~~~kk~~-~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~---~y~l~l~~~av~wq~~~vg~  288 (383)
                      +|+.=+... +-...     ...++|.++.. +|..-.|.  .        |..-+.   ..-..+..+++.|.+=-+- 
T Consensus       167 G~r~g~~~~g~~g~a-----~gm~vAaviv~Pig~~~ag~--~--------l~~p~ll~laLgvavlSSalPYsLEmiA-  230 (292)
T COG5006         167 GQRAGRAEHGTAGVA-----VGMLVAALIVLPIGAAQAGP--A--------LFSPSLLPLALGVAVLSSALPYSLEMIA-  230 (292)
T ss_pred             cchhcccCCCchHHH-----HHHHHHHHHHhhhhhhhcch--h--------hcChHHHHHHHHHHHHhcccchHHHHHH-
Confidence            999987442 11111     12234444433 55422221  1        111110   0011122334444331111 


Q ss_pred             ccceeecccchhhHH---HhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHH
Q 043611          289 AGMVFLTSSLTGGIS---MTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFC  339 (383)
Q Consensus       289 vGlv~~~Ssl~asvv---~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~  339 (383)
                            .+++.+...   ..+.+.+..+.+++++||.++..|+.|...++.+..
T Consensus       231 ------L~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         231 ------LRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             ------HhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence                  234444433   334444468999999999999999999999996554

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=2.5e-06  Score=83.82  Aligned_cols=208  Identities=10%  Similarity=0.089  Sum_probs=137.8

Q ss_pred             HhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHH
Q 043611          125 WGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAG  204 (383)
Q Consensus       125 ~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa  204 (383)
                      .+++|+|++++++++..-++++++.-..++|.|+++..+.+++...+|+...+..+.+.         ...|....+...
T Consensus        96 ~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf---------~~~gY~w~~~n~  166 (314)
T KOG1444|consen   96 KSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF---------NLRGYSWALANC  166 (314)
T ss_pred             ccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee---------cchhHHHHHHHH
Confidence            78899999999999999999999999999999999999999998888877777665543         234888888888


Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHH-
Q 043611          205 LLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQL-  283 (383)
Q Consensus       205 ~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~-  283 (383)
                      ++-+.+....++..+...  ..-.++..|-.+.+..+..+-.+..|||+++     . +....|.+.-.+++-.++-.. 
T Consensus       167 ~~~a~~~v~~kk~vd~~~--l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l-----~-~~~~~~~~~~~~~~~~lScv~g  238 (314)
T KOG1444|consen  167 LTTAAFVVYVKKSVDSAN--LNKFGLVFYNNLLSLPPLLILSFITGELDAL-----S-LNFDNWSDSSVLVVMLLSCVMG  238 (314)
T ss_pred             HHHHHHHHHHHHhhcccc--ccceeEEeehhHHHHHHHHHHHHHhcchHHH-----H-hhcccccchhHHHHHHHHHHHH
Confidence            888887777776666543  1122233344555566666556677887522     1 222223211111111110000 


Q ss_pred             HHhhhccc--eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhh
Q 043611          284 CFMGTAGM--VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKL  349 (383)
Q Consensus       284 ~~vg~vGl--v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~  349 (383)
                      ..+.-.+.  .-..|+.+-+++-..-.-.+.+..+++.|+++++..++|..+.+.|-..|-|..+.++
T Consensus       239 f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k  306 (314)
T KOG1444|consen  239 FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK  306 (314)
T ss_pred             HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence            00011111  1123777777777444555677777788899999999999999999888887655443

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.28  E-value=6e-06  Score=69.90  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL  178 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~  178 (383)
                      +.++....++..+++.+|.|++..+.+++.+++++.+++++|||+|++++.|+++...|+++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            55677889999999999999999999999999999999999999999999999999999888764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.27  E-value=2.3e-05  Score=79.18  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHH-HHHHH
Q 043611           33 LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKV-LTLSI  110 (383)
Q Consensus        33 ~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  110 (383)
                      +++..+..++=.+..+...++.|..-.+-....++++|...+ +.|..++.++..    +...+.....+.... ..++ 
T Consensus       187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~i~y-  261 (358)
T PLN00411        187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE----KNNPSVWIIHFDITLITIVT-  261 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc----cCCcccceeccchHHHHHHH-
Confidence            444444433333444566677776544432333445555444 555544333221    111111111122232 2223 


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611          111 LVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG  181 (383)
Q Consensus       111 ~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~  181 (383)
                       .|+..+....+|++++++++++..++....+|+|++++++++++|++++.++.|.++...|..+...+..
T Consensus       262 -~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~  331 (358)
T PLN00411        262 -MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA  331 (358)
T ss_pred             -HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence             3444556668999999999999999999999999999999999999999999999988888877765543

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.19  E-value=1e-07  Score=90.95  Aligned_cols=254  Identities=13%  Similarity=0.137  Sum_probs=157.1

Q ss_pred             cCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHH
Q 043611           59 NHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALL  138 (383)
Q Consensus        59 ~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll  138 (383)
                      .+|-|-|=.||++--+--.+..-|...+    |+    +.-...+|.   |+++++.=--.|++---+.+|++--...++
T Consensus        42 ~k~iN~Pt~QtFl~Y~LLalVY~~~~~f----R~----~~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTsmtSi~lL  110 (336)
T KOG2766|consen   42 RKGINAPTSQTFLNYVLLALVYGPIMLF----RR----KYIKAKWRH---YILLAFVDVEANYFVVKAYQYTSMTSIMLL  110 (336)
T ss_pred             hccCCCccHHHHHHHHHHHHHHhhHHHh----hh----HHHHHHHHH---hhheeEEeecccEEEeeehhhcchHHHHHH
Confidence            3345666667766554333333333333    22    111122232   555554433334455578888888888999


Q ss_pred             HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043611          139 LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIY  218 (383)
Q Consensus       139 ~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~  218 (383)
                      -+-..+-..+++++++|-|+.+.++.|+++...|++++..++-..+ +...+.+...|+++++.+|-+||..-...|..-
T Consensus       111 Dcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag-d~aggsnp~~GD~lvi~GATlYaVSNv~EEflv  189 (336)
T KOG2766|consen  111 DCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG-DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV  189 (336)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc-cccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence            9999999999999999999999999999999999888876663221 112223467899999999999999988888888


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccceeec-c
Q 043611          219 KKVYCYSMVMEMQLVMEIAATALATVGMASDGG-YPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLT-S  296 (383)
Q Consensus       219 kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~-~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGlv~~~-S  296 (383)
                      ||.    ...|+....+++++++..+=++.+.. .+.+.++.+-       ..+  +......+.++..-.  +.... |
T Consensus       190 kn~----d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i-------~~y--l~f~L~MFllYsl~p--il~k~~~  254 (336)
T KOG2766|consen  190 KNA----DRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAI-------FLY--LRFALTMFLLYSLAP--ILIKTNS  254 (336)
T ss_pred             hcC----cHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHH-------HHH--HHHHHHHHHHHHhhH--HheecCC
Confidence            887    47788888999999888887655543 1222121110       011  111112222222211  11111 1


Q ss_pred             cchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611          297 SLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY  341 (383)
Q Consensus       297 sl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y  341 (383)
                      +-.-|+-  +...=.|.+-+-.||-+.+|.-.++...+..|+..|
T Consensus       255 aT~~nls--lLTsDmwsl~i~~FgYhv~wLY~laF~~i~~GliiY  297 (336)
T KOG2766|consen  255 ATMFNLS--LLTSDMWSLLIRTFGYHVDWLYFLAFATIATGLIIY  297 (336)
T ss_pred             ceEEEhh--HhHHHHHHHHHHHHhcchhhhhHHHHHHHHHhhEEe
Confidence            1111111  111112333337788889999999999999888776

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.16  E-value=6.9e-05  Score=70.77  Aligned_cols=129  Identities=18%  Similarity=0.212  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhhhhhHhhhhHhhcCCCcch-hHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHH
Q 043611           36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSR-WVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGL  114 (383)
Q Consensus        36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~-w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl  114 (383)
                      ..+..++-.++.+...++.|....+.+..+ .+..+....|..+++ |+...   .++. + .   .+++.+..-...|+
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~---~~~~-~-~---~~~~~~~~~~~~~~  199 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLL-PFAWF---LGPN-P-Q---ALSLQWGALLYLGL  199 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHH-HHHHh---cCCC-C-C---cchHHHHHHHHHHH
Confidence            334444444556666777777665433222 333344455665555 33332   1111 1 1   12333433333443


Q ss_pred             H-HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 043611          115 L-LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSS  173 (383)
Q Consensus       115 l-~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~  173 (383)
                      + ......+|..+++++|++..+++..++|++++++++++++||+++.++.|+++...|+
T Consensus       200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            3 3456688999999999999999999999999999999999999999999999877763

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.12  E-value=0.00014  Score=71.02  Aligned_cols=132  Identities=15%  Similarity=0.031  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH-
Q 043611           37 VTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL-  115 (383)
Q Consensus        37 ~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll-  115 (383)
                      .+..++=.++.+...++.|.+-++  .+++..++.+..|--+++ |+...   ...   ...  .++..+...+..|++ 
T Consensus       150 ~ll~l~aa~~~a~~~v~~r~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~---~~~---~~~--~~~~~~~~~l~lgv~~  218 (293)
T PRK10532        150 AALALGAGACWAIYILSGQRAGAE--HGPATVAIGSLIAALIFV-PIGAL---QAG---EAL--WHWSILPLGLAVAILS  218 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHH-HHHHH---ccC---ccc--CCHHHHHHHHHHHHHH
Confidence            333344445566677777766432  334444666655544433 33332   111   111  222222222345544 


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611          116 LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       116 ~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      ....+.+|+++++++|++..+++...+|+|++++++++++|++++.++.|.++...|+......
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            3345579999999999999999999999999999999999999999999999888876666544

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.09  E-value=1.7e-05  Score=68.58  Aligned_cols=128  Identities=15%  Similarity=0.191  Sum_probs=93.5

Q ss_pred             HHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 043611           44 FVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLF  123 (383)
Q Consensus        44 ~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly  123 (383)
                      +.-.+..|+-.|.=-++  ..+=++|.+-+.-.-+.+...++.    .++.+.+ ...++|.+..-++.|+..|+.-++|
T Consensus        12 A~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~----~g~~~~~-~~~~~k~~lflilSGla~glswl~Y   84 (140)
T COG2510          12 ALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLV----TGNWQAG-GEIGPKSWLFLILSGLAGGLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHh----cCceecc-cccCcceehhhhHHHHHHHHHHHHH
Confidence            33456677766664443  334567777766332222122221    1111111 1256688888899999999999999


Q ss_pred             HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611          124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL  178 (383)
Q Consensus       124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~  178 (383)
                      +.+++.=++|-..=+-.+.++|+++||++++|||+|..+++|++|.++|++++..
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            9999999999988899999999999999999999999999999999999887753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.06  E-value=0.00011  Score=71.72  Aligned_cols=76  Identities=14%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611          103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL  178 (383)
Q Consensus       103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~  178 (383)
                      +..+..-...|+..+..+.+|..+++++|++..+++...+|++++++++++++|++++.++.|.++..+|+.+...
T Consensus       212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            3434333445556667779999999999999999999999999999999999999999999999988888666643

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.06  E-value=6.8e-05  Score=74.06  Aligned_cols=76  Identities=25%  Similarity=0.320  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611          104 KVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH  182 (383)
Q Consensus       104 ~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~  182 (383)
                      ++|.+...   +++.++.+-..++.+.|++..+=+.+.+++++++++.+++|||++++.+.|+++..+|++++......
T Consensus        51 ~~W~~G~~---~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~  126 (300)
T PF05653_consen   51 PLWWIGLL---LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK  126 (300)
T ss_pred             HHHHHHHH---HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence            34444432   34455667779999999999999999999999999999999999999999999999999888765443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.99  E-value=0.00018  Score=69.98  Aligned_cols=109  Identities=8%  Similarity=-0.068  Sum_probs=75.5

Q ss_pred             chhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH-HHHHHHHHHHhhcCCChhHHHHHHhhh
Q 043611           64 SRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL-LGLNNLLFSWGNSYLPVSTSALLLSSQ  142 (383)
Q Consensus        64 ~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll-~a~~~~Ly~~gl~ylp~St~sll~ssq  142 (383)
                      +.+..++....|-++++ ++...  .... ...   ..+.+.+..-...|++ ....+.+|.++++++|++..+++...+
T Consensus       177 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~---~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~  249 (292)
T PRK11272        177 GMMAGAAEMLAAGVVLL-IASLL--SGER-LTA---LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVN  249 (292)
T ss_pred             chHHHHHHHHHHHHHHH-HHHHH--cCCc-ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            35566665566766655 33322  1110 000   0122333333334443 345568999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611          143 LLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       143 l~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      |++++++++++++|++++.++.|.++...|..++...
T Consensus       250 Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        250 PVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888887776543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.95  E-value=0.00014  Score=71.16  Aligned_cols=132  Identities=19%  Similarity=0.265  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH
Q 043611           36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL  115 (383)
Q Consensus        36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll  115 (383)
                      .++..++-.++++...+..|.. +   -+++-.++.|..|..+--..++.. | +   +.+|   +.++........|++
T Consensus       153 Gi~~~l~sg~~y~~~~~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~-~-~---~~~~---~~~~~~~~~~~~Gi~  220 (290)
T TIGR00776       153 GILLLLMSTIGYLVYVVVAKAF-G---VDGLSVLLPQAIGMVIGGIIFNLG-H-I---LAKP---LKKYAILLNILPGLM  220 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-C---CCcceehhHHHHHHHHHHHHHHHH-H-h---cccc---hHHHHHHHHHHHHHH
Confidence            3444444455667777777753 3   445667777887666655433333 3 1   1122   234444456669988


Q ss_pred             HHHHHHHHHHhhc-CCChhHHHHHHhhhHHHHHHHHHHHhccccchhHH----HHHHHHHHHHHHhccc
Q 043611          116 LGLNNLLFSWGNS-YLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNL----NCVILLTLSSVLLALG  179 (383)
Q Consensus       116 ~a~~~~Ly~~gl~-ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i----~svvLltiG~vll~~~  179 (383)
                      .+..+.+|..|.+ ++++++++++.+..++.+++++++++||+.+++++    .|.++...|+.+++..
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            8999999999999 99999999999999999999999999999999999    9999888888777653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.91  E-value=0.0016  Score=63.41  Aligned_cols=114  Identities=12%  Similarity=0.145  Sum_probs=87.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHH-HHHhhhHHHHHHHHHHHhccccchhHHH----HHHHHHHHHHHh
Q 043611          102 TTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSA-LLLSSQLLFNLVFSVIIVKQKITFSNLN----CVILLTLSSVLL  176 (383)
Q Consensus       102 ~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~s-ll~ssql~Ftaifs~~ilkeK~t~~~i~----svvLltiG~vll  176 (383)
                      +++.+..+++.|++-+..|...+.+.+++.+|..- +-...|++.|++.++++++|--+..++.    +++++.+|+.+-
T Consensus        41 ~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   41 SGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence            35889999999999999997777888776555432 2237899999999999999988776654    788888887777


Q ss_pred             cccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043611          177 ALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEM  216 (383)
Q Consensus       177 ~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~  216 (383)
                      ...+..++ +..++++..-|+...+.+++.|..|.++-|.
T Consensus       121 s~~~~~~~-~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  121 SYQDKKSD-KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             cccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            77665432 1122344566999999999999999888766

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.84  E-value=0.00045  Score=67.44  Aligned_cols=73  Identities=14%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611          107 TLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       107 ~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      ......|+..+.-+.+|..+++++|++..+++...+|+++.++++++++|++++.++.|+++..+|+.++..+
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555667799999999999999999999999999999999999999999999999887787776543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.82  E-value=5.2e-05  Score=73.37  Aligned_cols=71  Identities=24%  Similarity=0.448  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611          105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL  175 (383)
Q Consensus       105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl  175 (383)
                      .+..-...++..+..+.+|..+++++|++..+.+...+|+++.++++++++|++++.++.|.++..+|+.+
T Consensus       210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33333444555666778999999999999999999999999999999999999999999999988888765

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.69  E-value=0.00075  Score=58.70  Aligned_cols=131  Identities=22%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             HhhhhhHhhhhHhhcC-----CCcch-hHHHHHHHhhhhhhhhhhhccccccccCCCC-CCC-C--cchHHHHHHHHHHH
Q 043611           45 VGSVSASLLSKYYFNH-----KGSSR-WVSTWVQCAGFPLLLPPIFLPYYLFKCTERR-PFS-H--FTTKVLTLSILVGL  114 (383)
Q Consensus        45 ~g~~~~~Ll~r~y~~~-----gg~~~-w~~t~vq~~g~plll~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~Gl  114 (383)
                      +.++....+.|..+.+     .+.++ =+.......++++++++.++....+..+... ... .  ..++.+..-+..|+
T Consensus        10 ~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (153)
T PF03151_consen   10 LFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGL   89 (153)
T ss_pred             HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHH
Confidence            3456666666766666     23333 3455555568888886555542111000000 000 0  13344555556666


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611          115 LLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL  175 (383)
Q Consensus       115 l~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl  175 (383)
                      +--..|+....-++++.+-+++++...+-+++.+++.++++|++|..++.|+++.++|..+
T Consensus        90 ~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   90 LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            6667777777999999999999999999999999999999999999999999998888653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.57  E-value=0.00068  Score=66.12  Aligned_cols=63  Identities=10%  Similarity=-0.021  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611          116 LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL  178 (383)
Q Consensus       116 ~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~  178 (383)
                      +..-|.++..+++++++++++++...++++++++++++++|++|..++.|.++...|..+...
T Consensus       231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            334456777899999999999999999999999999999999999999999988888776654

specificities overlap.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.51  E-value=0.0029  Score=59.99  Aligned_cols=202  Identities=15%  Similarity=0.120  Sum_probs=116.7

Q ss_pred             HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHH
Q 043611          124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA  203 (383)
Q Consensus       124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~A  203 (383)
                      +=+++|+|++.|++..-...+..|..-.++.|.|.+.....+-+++.+++++-.++|....  ....+..-.|.+....-
T Consensus        86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~--~~~~~~lN~GY~Wm~~N  163 (309)
T COG5070          86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS--AFKAQILNPGYLWMFTN  163 (309)
T ss_pred             ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH--HHHhcccCCceEEEehh
Confidence            3678899999999999999999999999999999999999999999998877766653111  00001112344444444


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHH
Q 043611          204 GLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQL  283 (383)
Q Consensus       204 a~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~  283 (383)
                      .+..+.+...+++..|--. + --.|-..|-.+.+..+++.--+...||+. ..-+.. |+           ..++.|..
T Consensus       164 clssaafVL~mrkri~ltN-f-~d~dtmfYnNllslPiL~~~s~~~edws~-~n~ann-l~-----------~d~l~am~  228 (309)
T COG5070         164 CLSSAAFVLIMRKRIKLTN-F-KDFDTMFYNNLLSLPILLSFSFLFEDWSP-GNLANN-LS-----------VDSLMAMF  228 (309)
T ss_pred             hHhHHHHHHHHHHhhcccc-c-chhhHHHHhhhHHHHHHHHHHHHhccCCc-chhhcC-CC-----------hHHHHHHH
Confidence            4555555444554443321 0 11222233444444444422233455642 121222 21           11222322


Q ss_pred             -HHhhhccceee-------cccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611          284 -CFMGTAGMVFL-------TSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV  342 (383)
Q Consensus       284 -~~vg~vGlv~~-------~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi  342 (383)
                       -.+..+|.-|+       +||-+-+.+..+-.....+.+.++|||+.+..++.+..+-...-..|-
T Consensus       229 ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa  295 (309)
T COG5070         229 ISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA  295 (309)
T ss_pred             HHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence             22334444332       244444555555444556788999999999999988776654333333

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.46  E-value=0.0008  Score=55.52  Aligned_cols=123  Identities=15%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhh--HHHHHHHHHHH
Q 043611          206 LFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL--TIIGNVVTWQL  283 (383)
Q Consensus       206 l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l--~l~~~av~wq~  283 (383)
                      +||.+....++..++.    .+.++..+..+.+.+ +.+-+...+..+.     .. ++...+.+..  ....+.+.+.+
T Consensus         2 ~~a~~~~~~k~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKKI----SPLSITFWRFLIAGI-LLILLLILGRKPF-----KN-LSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHHhccC----CHHHHHHHHHHHHHH-HHHHHHhhccccc-----cC-CChhhhhhhhHhhccceehHHHH
Confidence            4677777788888875    466777777777775 4433322232110     00 1111111111  12222333333


Q ss_pred             HHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          284 CFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       284 ~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      ...+.    .+.+.-..+.+..+.++++.+++++++||+++..+++|.++++.|.....|
T Consensus        71 ~~~a~----~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~~  126 (126)
T PF00892_consen   71 YFYAL----KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIST  126 (126)
T ss_pred             HHHHH----HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence            22221    112333344455565666899999999999999999999999998877543

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.40  E-value=0.0019  Score=56.08  Aligned_cols=127  Identities=13%  Similarity=0.112  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc-c-chhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHH
Q 043611          197 FFCTVGAGLLFALYLPVMEMIYKKVY-C-YSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTI  274 (383)
Q Consensus       197 ~~l~L~Aa~l~gl~~~l~q~~~kk~~-~-~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l  274 (383)
                      .+.++.+|+++|+--..++...|.+. . -..+      -.++...++..-++..|.|+ .+.|..     .+...|+++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~I------RtiVi~~~l~~v~~~~g~~~-~~~~~~-----~k~~lflil   72 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTI------RTIVILIFLLIVLLVTGNWQ-AGGEIG-----PKSWLFLIL   72 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHH------HHHHHHHHHHHHHHhcCcee-cccccC-----cceehhhhH
Confidence            46788899999998777888888774 1 1112      22333444444455677764 333332     223334443


Q ss_pred             H--HHHHHHHHHHhhh-ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          275 I--GNVVTWQLCFMGT-AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       275 ~--~~av~wq~~~vg~-vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      .  .+..+|++++... .|-...+     -=++-..+.++.+++++++||++|..+.+|.+++.+|...
T Consensus        73 SGla~glswl~Yf~ALk~G~as~V-----vPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          73 SGLAGGLSWLLYFRALKKGKASRV-----VPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcceE-----EEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            3  3578998877663 1111111     0124455667899999999999999999999999998653

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.39  E-value=0.0055  Score=59.87  Aligned_cols=78  Identities=8%  Similarity=0.015  Sum_probs=62.7

Q ss_pred             chHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611          102 TTKVLTLSILVG-LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       102 ~~~~~~~~~~~G-ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      ++..+..-+.+| +..+....+|..++++++++..+++...+|++++++++++++|+++..++.|.++..+|+.+...+
T Consensus       210 ~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        210 DMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            344444444444 333355589999999999999999999999999999999999999999999999888887665544

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.26  E-value=0.079  Score=53.53  Aligned_cols=111  Identities=16%  Similarity=0.204  Sum_probs=85.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccc-------cchhHHHHHHHHHHH
Q 043611          101 FTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQK-------ITFSNLNCVILLTLS  172 (383)
Q Consensus       101 ~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK-------~t~~~i~svvLltiG  172 (383)
                      .+++.+....+.|++-+..|.++..+++|+.+|.. .+-...|++++.++..++.+|=       -...-+.|+++..+|
T Consensus        68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG  147 (345)
T PRK13499         68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG  147 (345)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999988865 4556899999999999998752       234567888888999


Q ss_pred             HHHhcc----cCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 043611          173 SVLLAL----GSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYL  211 (383)
Q Consensus       173 ~vll~~----~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~  211 (383)
                      +++.+.    .+..++.++.++.+.--|++..+.+.+.|+.|.
T Consensus       148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            888876    332111111233455679999999999999987

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.24  E-value=0.0029  Score=54.49  Aligned_cols=70  Identities=20%  Similarity=0.400  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611          111 LVGLLLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS  180 (383)
Q Consensus       111 ~~Gll~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~  180 (383)
                      ..-+.++...+++..+++++|.|++ ++......+.+++.++++++|++|+.++.++.+..+|++++-..+
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3445666777888899999999985 455679999999999999999999999999999999987775543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.23  E-value=0.0028  Score=55.20  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHH--HhccccchhHHHHHHHHHHHHHHhccc
Q 043611          115 LLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVI--IVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       115 l~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~--ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      .++....+|.++++.+|+|.+.-+.+...+++++.++.  +++|++|+.++.|+++..+|+.++..+
T Consensus        57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            34455688999999999999998888888889888885  899999999999999999998887643

>TIGR00688 rarD rarD protein

Probab=97.22  E-value=0.0086  Score=56.91  Aligned_cols=134  Identities=13%  Similarity=0.167  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC---Ccch--h
Q 043611          196 GFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK---GPVV--Y  270 (383)
Q Consensus       196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~---g~~~--y  270 (383)
                      |.++.+.|+++||...+..+.. ..+    .+.|+..+=++++..++..-+...++.++.   .++ ++.   .++.  .
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~~----~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~   73 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KPL----PATDILGHRMIWSFPFMLLSVTLFRQWAAL---IER-LKRIQKRPLILSL   73 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-ccC----CHHHHHHHHHHHHHHHHHHHHHHHcchHHH---HHH-HhCcccchHHHHH
Confidence            8899999999999988777763 333    577777777777776655444333432211   011 211   1111  0


Q ss_pred             hhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611          271 CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV  342 (383)
Q Consensus       271 ~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi  342 (383)
                      .+.-+.....|..++.+.    .+.+...++++....|..+.+++.++++|+++..+++|.++.+.|+....
T Consensus        74 ~~~g~~~~~~~~~~~~a~----~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        74 LLCGLLIGFNWWLFIWAV----NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            111111223333333332    12333345555555555589999999999999999999999999987654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.21  E-value=0.0025  Score=54.02  Aligned_cols=66  Identities=17%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhH-HHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 043611          111 LVGLLLGLNNLLFSWGNSYLPVST-SALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLL  176 (383)
Q Consensus       111 ~~Gll~a~~~~Ly~~gl~ylp~St-~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll  176 (383)
                      ..-+.++...++.+.+++++|.++ |++-.....+.+++.++++.||++++.++.++.+...|++.+
T Consensus        40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            334445566778889999999997 577778999999999999999999999999999999887765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.11  E-value=0.02  Score=53.95  Aligned_cols=78  Identities=22%  Similarity=0.321  Sum_probs=65.0

Q ss_pred             chHHHHHHHHHHHHHH-HHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611          102 TTKVLTLSILVGLLLG-LNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       102 ~~~~~~~~~~~Gll~a-~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      ..+.+......|++.+ ..+.+|..+++..|++..+.+..+++++++++++++++|+++..++.|+++...|..+....
T Consensus       210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            3455666666676655 36688889999999999999999999999999999999999999999998788776666543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.0036  Score=52.71  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhhcCCChhH-HHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611          115 LLGLNNLLFSWGNSYLPVST-SALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL  178 (383)
Q Consensus       115 l~a~~~~Ly~~gl~ylp~St-~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~  178 (383)
                      .++....+.+.+++++|.++ |++--....+-+++.+++++||++++.++.++.++..|++.+-.
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            34466678889999999997 68888999999999999999999999999999999999776643

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.02  E-value=0.0056  Score=51.50  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhcCCChhH-HHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 043611          114 LLLGLNNLLFSWGNSYLPVST-SALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLA  177 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St-~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~  177 (383)
                      +.++...++.+.+++.+|.++ |++-.....+.+++.++++.|||+++.++.++.+...|++.+-
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            344466677789999999997 6777789999999999999999999999999999999977763

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.86  E-value=0.0095  Score=50.50  Aligned_cols=65  Identities=12%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611          115 LLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG  179 (383)
Q Consensus       115 l~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~  179 (383)
                      .++....+++.+++.+|.|++ ++-.....+.+++.+++++||++++.++.++.+..+|++++-+.
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344566777899999999975 45566899999999999999999999999999999998887543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.63  E-value=0.043  Score=55.18  Aligned_cols=53  Identities=17%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             HhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 043611          125 WGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLA  177 (383)
Q Consensus       125 ~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~  177 (383)
                      ++++.+++.++++....+++++.++++++++|++|+.++.|.++...|..+..
T Consensus       295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            69999999999999999999999999999999999999999998888876543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.55  E-value=0.039  Score=55.71  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH---HH-hhhHHHHHHHHHHHhccccc------hhHHHHHHHHHHH
Q 043611          103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSAL---LL-SSQLLFNLVFSVIIVKQKIT------FSNLNCVILLTLS  172 (383)
Q Consensus       103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sl---l~-ssql~Ftaifs~~ilkeK~t------~~~i~svvLltiG  172 (383)
                      .|..+.+++.|++-+.+|..|.+|-..++++...+   +. |+.+++..+-+. ++||+=+      +..+.++++..+|
T Consensus       257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g  335 (345)
T PRK13499        257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA  335 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence            57788889999999999999999988875554443   44 888899999888 5999877      7778899999999


Q ss_pred             HHHhcccC
Q 043611          173 SVLLALGS  180 (383)
Q Consensus       173 ~vll~~~~  180 (383)
                      +++++.+.
T Consensus       336 ~~lig~~~  343 (345)
T PRK13499        336 ANIVGLGN  343 (345)
T ss_pred             HHHHhhcc
Confidence            88888763

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.0011  Score=65.54  Aligned_cols=70  Identities=11%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCC
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHD  183 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~  183 (383)
                      ++++..+..-+-++.|-|++..+=+.+.+.+++++++.+++|||++..-..|.++..+|.+++..+...+
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            4455666666688888999999999999999999999999999999999999999999999999886543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.36  E-value=0.013  Score=47.91  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccccchhHHHHHHH
Q 043611          115 LLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQKITFSNLNCVIL  168 (383)
Q Consensus       115 l~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK~t~~~i~svvL  168 (383)
                      .++...+++..+++++|.|+. .+......+.+++.+.++.+|++|+.++.++.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            556777899999999999987 667789999999999999999999999999975

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.23  E-value=0.059  Score=45.07  Aligned_cols=45  Identities=4%  Similarity=0.082  Sum_probs=37.7

Q ss_pred             HHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcc
Q 043611          302 ISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMY  346 (383)
Q Consensus       302 vv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~  346 (383)
                      .+..+-+.++.+++.++++|+++..+++|..+++.|+..-.+++.
T Consensus        65 ~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   65 AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            344454555799999999999999999999999999999888654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.16  E-value=0.047  Score=53.52  Aligned_cols=137  Identities=18%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCC--C---CCcchHHHHHH
Q 043611           36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRP--F---SHFTTKVLTLS  109 (383)
Q Consensus        36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~  109 (383)
                      .++.+++=++.++......+..+++.+.++|=.-+.... |.|+++++....+   .+.-.+.  +   .+.....++..
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~---~~~~~~~~~f~~~~p~~~~~l~~~  231 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP---TGEFRSAIRFISAHPSVLLYLLLF  231 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHhHHHHHHHHHH
Confidence            444444433444555556666666666666544444444 7776665444421   1111111  1   01122334444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611          110 ILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL  178 (383)
Q Consensus       110 ~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~  178 (383)
                      ..+|.+  +++..+ .-.+...+-+.+++..+.-+++.++|+.+.++++++.+|.|+++.+.|..+-..
T Consensus       232 s~~~~~--g~~~i~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  232 SLTGAL--GQFFIF-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHH--HHHHHH-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            445544  444555 446778888999999999999999999999999999999999988888665443

; GO: 0055085 transmembrane transport

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.04  E-value=0.14  Score=50.40  Aligned_cols=136  Identities=15%  Similarity=0.126  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhh-
Q 043611          194 FIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL-  272 (383)
Q Consensus       194 ~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l-  272 (383)
                      .-|+++.++|.++||+.-...+. .    ......|+...=-+++.++..+-+...+.+++... .   .++.+..... 
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l----~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~---~~~p~~~~~~~   76 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-L----EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-L---LKQPKTLLMLA   76 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-H----ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-H---HhCcHHHHHHH
Confidence            35999999999999984322222 2    23357788888888888888877777777765422 1   3333322111 


Q ss_pred             -HHHHHHHHHHHHHhhh-ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          273 -TIIGNVVTWQLCFMGT-AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       273 -~l~~~av~wq~~~vg~-vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                       +-.-...+|.++.-.+ .|+     .+.++.=..+-|.+..+++.++++|+++..|.++..++..|+..-..
T Consensus        77 l~a~li~~nW~lfiWAvn~g~-----~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          77 LTALLIGLNWWLFIWAVNNGH-----VLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             HHHHHHHHHHHHhheecCCCc-----hhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence             2222344665533322 122     22223333344445699999999999999999999999999887644

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.01  E-value=0.088  Score=51.41  Aligned_cols=92  Identities=24%  Similarity=0.264  Sum_probs=69.3

Q ss_pred             cchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhh
Q 043611           63 SSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQ  142 (383)
Q Consensus        63 ~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssq  142 (383)
                      -++|-.-+-|..|.-+-.+.+...   .    +++   ...|...-....|++.+..|+.|..+.+..-++++-.+.|+.
T Consensus       162 ~~~~~~~lPqaiGm~i~a~i~~~~---~----~~~---~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~  231 (269)
T PF06800_consen  162 VSGWSAFLPQAIGMLIGAFIFNLF---S----KKP---FFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLG  231 (269)
T ss_pred             CChhHhHHHHHHHHHHHHHHHhhc---c----ccc---ccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHH
Confidence            345657778888886655322222   1    111   111223445778999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccchhHHH
Q 043611          143 LLFNLVFSVIIVKQKITFSNLN  164 (383)
Q Consensus       143 l~Ftaifs~~ilkeK~t~~~i~  164 (383)
                      ++.+.+.+.+++|||=+++++.
T Consensus       232 vvIStlgGI~il~E~Kt~ke~~  253 (269)
T PF06800_consen  232 VVISTLGGIFILKEKKTKKEMI  253 (269)
T ss_pred             HHHHHhhhheEEEecCchhhHH
Confidence            9999999999999999988664

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.81  E-value=0.043  Score=53.01  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             cchHHHHHHHHHHHHHHHHH-HHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 043611          101 FTTKVLTLSILVGLLLGLNN-LLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSV  174 (383)
Q Consensus       101 ~~~~~~~~~~~~Gll~a~~~-~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~v  174 (383)
                      +.|.++......|++-..-- .|=+.++..+|.++++++.|.+|++.++-++++++|.+|..||.+++....+++
T Consensus       204 ~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         204 FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            55667777777776644433 566789999999999999999999999999999999999999999986665544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.63  E-value=0.34  Score=42.56  Aligned_cols=127  Identities=17%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 043611           35 LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG  113 (383)
Q Consensus        35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  113 (383)
                      +.++.-.++.++...+.-|.+..     .++|.++++-.. |+-++++.+++.+   ++ +.+..+ ..|++......+|
T Consensus         5 la~~aG~~i~~q~~~N~~L~~~~-----gs~~~as~i~~~~G~i~~~i~~~~~~---~~-~~~~~~-~~p~w~~lGG~lG   74 (138)
T PF04657_consen    5 LALLAGALIALQAAFNGQLGKAL-----GSPLVASFISFGVGFILLLIILLITG---RP-SLASLS-SVPWWAYLGGLLG   74 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----CccHHHHHHHHHHHHHHHHHHHHHhc---cc-ccchhc-cCChHHhccHHHH
Confidence            33444455666777776666652     368888888777 8888875555442   11 111111 2345555566677


Q ss_pred             HHHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHH----HhccccchhHHHHHHHHHHHHH
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVI----IVKQKITFSNLNCVILLTLSSV  174 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~----ilkeK~t~~~i~svvLltiG~v  174 (383)
                      ..+=   .+..+....+.++.. .+....|++..++...|    .-|+|+++.++.|++++.+|+.
T Consensus        75 ~~~V---~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   75 VFFV---LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             HHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            5522   223355566666554 55669999999999998    7899999999999999998865

>TIGR00803 nst UDP-galactose transporter

Probab=95.39  E-value=0.036  Score=51.71  Aligned_cols=60  Identities=22%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHH
Q 043611          113 GLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLS  172 (383)
Q Consensus       113 Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG  172 (383)
                      .+..+....+-.+-++|.+..+.++..+...++++++|+++++++++..++.|+.+...|
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~  218 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLA  218 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHee
Confidence            344555556677889999999999999999999999999999999999999999876665

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=93.90  E-value=0.19  Score=42.43  Aligned_cols=45  Identities=11%  Similarity=0.142  Sum_probs=35.6

Q ss_pred             ccchhhHHH---hhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          296 SSLTGGISM---TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       296 Ssl~asvv~---~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      +..+.|+..   .+....+.++++++|||+++..|++|..+++.|+..
T Consensus        59 ~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         59 QNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             hhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            445556542   245555789999999999999999999999999765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=93.45  E-value=0.24  Score=41.96  Aligned_cols=46  Identities=11%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611          296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY  341 (383)
Q Consensus       296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y  341 (383)
                      .+++-++...    ++...+.+.++++|||++|+.|++|+.+++.|+...
T Consensus        52 ~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l  101 (110)
T PRK09541         52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI  101 (110)
T ss_pred             hhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            5566677644    456667899999999999999999999999988775

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=93.30  E-value=0.58  Score=39.51  Aligned_cols=47  Identities=17%  Similarity=0.325  Sum_probs=37.7

Q ss_pred             ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611          296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV  342 (383)
Q Consensus       296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi  342 (383)
                      .+++.++...    ++...+.+.++++|||+++..|++|+.+++.|+...-
T Consensus        52 k~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          52 KTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            3445566533    6666788999999999999999999999999987643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=93.27  E-value=0.2  Score=43.13  Aligned_cols=46  Identities=11%  Similarity=0.170  Sum_probs=36.1

Q ss_pred             ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611          296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY  341 (383)
Q Consensus       296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y  341 (383)
                      ..++.++...    ++...+.+.++++|||++|..|++|+.+++.|+..-
T Consensus        52 ~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l  101 (120)
T PRK10452         52 KKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI  101 (120)
T ss_pred             hhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            3444465533    455567889999999999999999999999988765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=92.91  E-value=1.6  Score=43.93  Aligned_cols=142  Identities=14%  Similarity=0.081  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 043611           34 VLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG  113 (383)
Q Consensus        34 ~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  113 (383)
                      ++.=+.++.=.+-++.+..+.++...+. ++.=+-.++-.-|+.+..+.+.+.   .+.. -... .++.+.....+...
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~il---e~~~-i~~~-~w~~~~~~~~v~~~  240 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAIL---ERSG-IESI-HWTSQVIGLLVGYA  240 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHhe---ehhh-hhcc-CCChhhHHHHHHHH
Confidence            3333444443444455555555444443 333334555666777776544443   1211 1122 24445455445555


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG  181 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~  181 (383)
                      +.+.....+....+++.++...++=..+.-++++++..++.++|+++.-+.|.++..+|.++....+.
T Consensus       241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            55555556667778888887888888888999999999999999999999999999999887776653

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=92.04  E-value=0.48  Score=40.14  Aligned_cols=45  Identities=16%  Similarity=0.238  Sum_probs=36.7

Q ss_pred             ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611          296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS  340 (383)
Q Consensus       296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~  340 (383)
                      ..++.++...    ++...+.+.++++|||+++..|++|+.+++.|+..
T Consensus        57 ~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~  105 (109)
T PRK10650         57 KGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM  105 (109)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            4556677633    55666789999999999999999999999998865

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=91.77  E-value=0.52  Score=46.69  Aligned_cols=38  Identities=18%  Similarity=0.201  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          306 AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       306 l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      +......+++-.++||+++...++|.++++.|......
T Consensus        85 ~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   85 LSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             hhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            44556789999999999999999999999999877643

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=91.66  E-value=1.7  Score=43.77  Aligned_cols=145  Identities=19%  Similarity=0.241  Sum_probs=92.9

Q ss_pred             chhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH-HHHHHhhh
Q 043611           64 SRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVST-SALLLSSQ  142 (383)
Q Consensus        64 ~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St-~sll~ssq  142 (383)
                      =.|=+.|+-..-+.-++.|.... ++.-..-.+-....+...+...++.|++-|..++.|-.+++|+-.|. .++...+-
T Consensus        32 WsWEs~Wlv~gi~swli~P~~~a-~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~  110 (344)
T PF06379_consen   32 WSWESYWLVQGIFSWLIVPWLWA-LLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLC  110 (344)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH-HHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHH
Confidence            35888888877777777777654 22111100001112224566778899999999999999999988764 45555555


Q ss_pred             HHHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHHhcccC---CCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 043611          143 LLFNLVFSVIIVK-------QKITFSNLNCVILLTLSSVLLALGS---GHDKSPDLPKSKYFIGFFCTVGAGLLFAL  209 (383)
Q Consensus       143 l~Ftaifs~~ilk-------eK~t~~~i~svvLltiG~vll~~~~---~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl  209 (383)
                      .+|-.+.--++.+       ++-....+.++++..+|+++.+...   +.+.+.+.++.+.--|+++++.+.++++.
T Consensus       111 ~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~  187 (344)
T PF06379_consen  111 AVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSAC  187 (344)
T ss_pred             HHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            5555555444432       3335678899999999988887433   11112333444456799999988887776

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=90.97  E-value=0.78  Score=38.56  Aligned_cols=46  Identities=24%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611          296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY  341 (383)
Q Consensus       296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y  341 (383)
                      ..++.++...    ++...+.+.++++|||++|..|++|+.+++.|+..-
T Consensus        51 ~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         51 KSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             hhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            3445566533    566667899999999999999999999999988764

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=90.92  E-value=5  Score=38.48  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHH-hhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHH
Q 043611           34 VLLVTNYLCLFV-GSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSIL  111 (383)
Q Consensus        34 ~~~~~~~~~l~~-g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (383)
                      ++.++.+++-.. .+.++....|..=+ ++.+.|++...... |.++.++..++.. ..+-+++.-+..+++..+.    
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~-~~~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g~f~G~~~~~~~----  186 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKR-SNVSLWIQNMQLYLFGILFNLLALLLSD-GSAISESGFFHGYSWWVWI----  186 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCchhhcchHHHH----
Confidence            444444443333 33334444444333 44888999988776 7887765433321 1111111223344443221    


Q ss_pred             HHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHH
Q 043611          112 VGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVI  167 (383)
Q Consensus       112 ~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svv  167 (383)
                      .=+..+...++-..-++|.+.=+=..-.+...+.++++++++.+.+++..-+.|..
T Consensus       187 ~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  187 VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            11233333455556678888877888889999999999999999999988777764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=90.85  E-value=0.45  Score=40.63  Aligned_cols=57  Identities=14%  Similarity=0.105  Sum_probs=49.4

Q ss_pred             HHHHHHHhhcCCChhHHHHH-HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611          119 NNLLFSWGNSYLPVSTSALL-LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL  175 (383)
Q Consensus       119 ~~~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl  175 (383)
                      ...+|.+.+...|.|...-+ ++..-+||++.++++-+|..+++.+.|+.+...|+.+
T Consensus        54 GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   54 GSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            33778788999999988877 5999999999999999999999999999988887654

Many members are annotated as potential transmembrane proteins.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=90.07  E-value=12  Score=32.68  Aligned_cols=124  Identities=16%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhH-H
Q 043611          196 GFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLT-I  274 (383)
Q Consensus       196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~-l  274 (383)
                      ..++.+.+.++-+++..+.-+..++..   .+++-..+...++++.+.+-.+..++. +    .+. +.+.+|.+++. +
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~g---s~~~as~i~~~~G~i~~~i~~~~~~~~-~----~~~-~~~~p~w~~lGG~   72 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALG---SPLVASFISFGVGFILLLIILLITGRP-S----LAS-LSSVPWWAYLGGL   72 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHHhccc-c----cch-hccCChHHhccHH
Confidence            356778888888888888888888873   344444555567776666655555542 2    222 44555555542 2


Q ss_pred             HHHHHHHH-HHHhhhccceeecccchhhHHHhhHHHHH--HHHHHHHhC--------CcchhhhHHHHHHHHHHHH
Q 043611          275 IGNVVTWQ-LCFMGTAGMVFLTSSLTGGISMTAILAMN--VIAGVVVYG--------DSFGGVKAVSTVLCAWGFC  339 (383)
Q Consensus       275 ~~~av~wq-~~~vg~vGlv~~~Ssl~asvv~~l~~pv~--~ilAvi~fg--------E~~~~~kiig~~L~l~G~~  339 (383)
                      .+..+... ...+.-.           +...+....++  .+.+.++.|        ++++..|++|..+.+.|..
T Consensus        73 lG~~~V~~~~~~vp~l-----------G~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   73 LGVFFVLSNIILVPRL-----------GAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             HHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            22221111 1112211           22222222332  455555444        8999999999999998864

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=90.04  E-value=1.6  Score=37.98  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=26.6

Q ss_pred             HHHHHHH--HHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611          310 MNVIAGV--VVYGDSFGGVKAVSTVLCAWGFCSYV  342 (383)
Q Consensus       310 v~~ilAv--i~fgE~~~~~kiig~~L~l~G~~~yi  342 (383)
                      ++.++++  ++|||+++..|++|.++++.|+....
T Consensus        87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3455555  38999999999999999998877743

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=84.78  E-value=19  Score=36.55  Aligned_cols=148  Identities=19%  Similarity=0.144  Sum_probs=91.0

Q ss_pred             ccchHHHHHHHHHHHHHhhh-----hhHhhhhHhhcCCCcchhHHHH-----HHHhhhhhhhhhhhccccccccCCC---
Q 043611           29 SKSYLVLLVTNYLCLFVGSV-----SASLLSKYYFNHKGSSRWVSTW-----VQCAGFPLLLPPIFLPYYLFKCTER---   95 (383)
Q Consensus        29 ~~~~~~~~~~~~~~l~~g~~-----~~~Ll~r~y~~~gg~~~w~~t~-----vq~~g~plll~~~~~~~~~~~~~~~---   95 (383)
                      +.++=+++.+.+-.|-.+..     ++|+-  .--.+.|..++.+++     +..-||-.=+ .+|+.+ ..++++.   
T Consensus       170 n~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~--~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~-~yc~~~-l~~~k~~s~~  245 (344)
T PF06379_consen  170 NFKKGLIIAVLSGVMSACFNFGLDAGKPIH--EAAVAAGVNPLYANLPVYVVVLWGGFITNL-IYCLIL-LAKNKNWSWK  245 (344)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHcCCcHH--HHHHHcCCCcHHHhCchhhhhhhhHHHHHH-HHHHHH-HhhcCCCccc
Confidence            34444777777766655543     23431  122334667776665     2333554443 455442 2222221   


Q ss_pred             CCCC---CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCC----hhHHHHHHhhhHHHHHHHHHHHh-----ccccchhHH
Q 043611           96 RPFS---HFTTKVLTLSILVGLLLGLNNLLFSWGNSYLP----VSTSALLLSSQLLFNLVFSVIIV-----KQKITFSNL  163 (383)
Q Consensus        96 ~~~~---~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp----~St~sll~ssql~Ftaifs~~il-----keK~t~~~i  163 (383)
                      ..+.   +...+..+.+++-|.+==.++..|.+|=..++    .+...+..+..++|.-+-.+.+-     .+|--+.-+
T Consensus       246 ~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~  325 (344)
T PF06379_consen  246 GDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLV  325 (344)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHH
Confidence            1221   12235778888899888888899999888776    66788888888888888777553     235556667


Q ss_pred             HHHHHHHHHHHHhcccC
Q 043611          164 NCVILLTLSSVLLALGS  180 (383)
Q Consensus       164 ~svvLltiG~vll~~~~  180 (383)
                      .++.++.+++++++.+.
T Consensus       326 ~G~~vlI~s~~ivG~G~  342 (344)
T PF06379_consen  326 LGIAVLILSVVIVGYGM  342 (344)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            88888888888887653

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 47/253 (18%), Positives = 68/253 (26%), Gaps = 80/253 (31%)

Query: 16  LHGQGVEDQKAKTSKSYLVLLVTNYLCLFVGSVSASLLSKYYFN-HKGSSRWVSTWVQCA 74
           + G         + K+++ L V           S  +  K  F        W+     C 
Sbjct: 155 IDGVL------GSGKTWVALDVCL---------SYKVQCKMDFKIF-----WL-NLKNCN 193

Query: 75  GFPLLLPPIFLPYYLFKCT-ERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVS 133
               +L  +    Y        R       K+   SI       L  LL S    Y    
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSK--PY---- 243

Query: 134 TSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLT--LSSVLLALGSGHDKSPDLPKS 191
            + LL+    L N V +         F NL+C ILLT     V   L +       L   
Sbjct: 244 ENCLLV----LLN-VQNAKAWN---AF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 192 KYFIGFFCTVGAGL-LFALY-------LP---------VMEMI-------------YKKV 221
                   T      L   Y       LP          + +I             +K V
Sbjct: 295 SM--TL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 222 YC--YSMVMEMQL 232
            C   + ++E  L
Sbjct: 351 NCDKLTTIIESSL 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.08
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.02
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.59
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	94.05

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.08  E-value=1.5e-05  Score=65.96  Aligned_cols=67  Identities=12%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHH-HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALL-LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS  180 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~  180 (383)
                      +.++....+|..+++++|.|+..-+ .+..++++++.+++++||++|+.++.|+++...|++++...+
T Consensus        38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4556677888999999999999777 899999999999999999999999999999999988887643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.02  E-value=1.1e-05  Score=69.77  Aligned_cols=67  Identities=12%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHH-HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611          114 LLLGLNNLLFSWGNSYLPVSTSALL-LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS  180 (383)
Q Consensus       114 ll~a~~~~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~  180 (383)
                      +.++...++|..+++++|+|+..-+ ....+++++++++++++|++++.++.|+++..+|++++...+
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4455667899999999999977777 899999999999999999999999999999999988887644

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.59  E-value=0.0055  Score=52.62  Aligned_cols=39  Identities=8%  Similarity=0.041  Sum_probs=27.0

Q ss_pred             hhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          305 TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       305 ~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      .+.+.++.++++++|||+++..+++|.++++.|+.....
T Consensus        65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344555799999999999999999999999988877644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=94.05  E-value=0.19  Score=41.08  Aligned_cols=48  Identities=10%  Similarity=0.120  Sum_probs=36.6

Q ss_pred             ccchhhHHH----hhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611          296 SSLTGGISM----TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY  343 (383)
Q Consensus       296 Ssl~asvv~----~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy  343 (383)
                      +..+.+++.    .+.+..+.++++++|||+++..|++|..+++.|+.....
T Consensus        52 ~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            334445542    244555799999999999999999999999988877543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00