Citrus Sinensis ID: 043623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHcccccccccHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHccccccccccccccccHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHcccccEEEcccHHHHHcccccccEEEEEcccccccccccEEEEEEEEccccHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEccHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccEEEEEEcccccccccccccEEEEEccccccccccccEEcccccccccHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccHHHEEEHHHHHHHHHcccccccHHHHHHHHHHccccccEEEEEcccEEEEEEEc
Coil and Loop (DISEMBL)
MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVelgipdiihkrgrpvtlpELVSalefqpnkRNCLRRIMRLLdhsgffsttkvhnsreeENEAYALTSASKLllkdkpyclspFVLLVTdaafitpghylsrwlrgnelpdpfvtghginiwgyaeqnhEFNNLfnqglasdSQMAKLIIKDCKHIFDGLSSlvevgggtgSFARIISEafpsikcsvlelphviadlpetdnlkfiagdmnqsipsADAFLFKLIFHDYDDEVCLKLLKNCREAVassdgrekVIIVDIVVnekkdkpeitEAKLLYDALMMTCVPGIERSEKEWERLFFDagftsykitpllglrsFIEVYL
Flexible Loop (DISEMBL)
MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTkvhnsreeeNEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCReavassdgrekviivdivvnekkdkpeiteAKLLYDALMMTCVPGIERSEKEWERLFFDAGftsykitpllglrsFIEVYL
Low Complexity Region (SEG)
MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL
Disordered region (IsUnstruct)
**********ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV*********AYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY*
Disordered Region (DISOPRED)
***************QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK**PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL
Disordered Region (DISEMBL)
********ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL
Disordered Region (DISPRO)
********ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
B6VJS4	357	Trans-resveratrol di-O-me	no	no	0.961	0.966	0.481	5e-98
O24305	360	6a-hydroxymaackiain methy	N/A	no	0.977	0.975	0.458	3e-91
Q84KK5	357	Isoflavone 7-O-methyltran	N/A	no	0.986	0.991	0.459	2e-90
O22309	352	Isoflavone-7-O-methyltran	N/A	no	0.972	0.991	0.450	2e-88
O22308	352	Isoflavone-7-O-methyltran	N/A	no	0.972	0.991	0.448	6e-88
O24529	352	Isoflavone-7-O-methyltran	N/A	no	0.972	0.991	0.445	2e-87
Q84KK4	365	Isoflavone 4'-O-methyltra	N/A	no	0.994	0.978	0.468	1e-86
P0DH60	360	6a-hydroxymaackiain methy	N/A	no	0.977	0.975	0.455	4e-86
C6TAY1	358	Flavonoid 4'-O-methyltran	no	no	0.961	0.963	0.446	1e-85
Q6VMW0	366	8-hydroxyquercetin 8-O-me	N/A	no	0.980	0.961	0.469	6e-85

>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2

 Score =  358 bits (918), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 168/349 (48%), Positives = 236/349 (67%), Gaps = 4/349 (1%)

Query: 11  ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCL 70
           EL  AQAH++ H+ +++ S+ LKCA++LGIPDIIH  G+P+TLPELV+ L   P +  C+
Sbjct: 11  ELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPKRSQCV 70

Query: 71  RRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFIT 130
            R+MR+L HSGF +  +V   +EEE   Y LT AS+LLL D    + P VL + D     
Sbjct: 71  YRLMRILVHSGFLAAQRVQQGKEEE--GYVLTDASRLLLMDDSLSIRPLVLAMLDPILTK 128

Query: 131 PGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM-AKLIIKDCK 189
           P HYLS W + N+ P PF T +  + W YA    + NN FN+ +ASD+++   +++K+ +
Sbjct: 129 PWHYLSAWFQ-NDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKEGQ 187

Query: 190 HIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQS 249
            +F GL+SLV+VGGGTG  A+ I+ AFP + C+VL+L HV+A L  + NL + AGDM ++
Sbjct: 188 GVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMFEA 247

Query: 250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEA 309
           IP ADA L K I HD+ +E C+K+LK CREA+ S +   KVII+D+++ + +   + TE 
Sbjct: 248 IPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSTET 307

Query: 310 KLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           +L +D  MM   PG ER E EWE+LF DAGF+ YKITP+LGLRS IEVY
Sbjct: 308 QLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVY 356

Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME).
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0

>sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1

 Score =  335 bits (860), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 233/351 (66%)

Query: 8   DANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKR 67
           + +EL+ AQ HLYKHV +++SS+ LK A+ELGI D IH  G+P+TLPEL S+L+  P+K 
Sbjct: 9   EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHPSKV 68

Query: 68  NCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAA 127
           N L R +RLL H+GFF+ T V ++  EE  AY LT +SKLL+  K  CLS  V      +
Sbjct: 69  NILYRFLRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALHPS 128

Query: 128 FITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKD 187
            +       +W   ++    F    G N W +  ++ +  ++F   +A+DS++ KL I++
Sbjct: 129 SLDMWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLFKLAIQE 188

Query: 188 CKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMN 247
            KH+F+GL SLV+V GGTG  A++I EAFP IKC+V + P V+ +L   +NL F+ GDM 
Sbjct: 189 NKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVGGDMF 248

Query: 248 QSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT 307
           +S+PSADA L K + HD++DE+ LK+LKN +EA++      KVII+DI ++E  D   +T
Sbjct: 249 KSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLT 308

Query: 308 EAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           E +L YD +M+T   G ER++KEWE+L +DAGF+ YKITP+ G +S IEVY
Sbjct: 309 ELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVY 359

Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 6

>sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/357 (45%), Positives = 235/357 (65%), Gaps = 3/357 (0%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+FQ QA LY+H+ +++ S+ LK  VEL IP+IIH  G+P+T+ ELVS L+
Sbjct: 3   SSINGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILK 62

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
               K   ++RIMR + H+GFF   ++    +EENEAYALT+AS+LL+K    CL+P V 
Sbjct: 63  VPQTKAGNVQRIMRYMAHNGFFERVRIQ-EEQEENEAYALTAASELLVKGSELCLAPMVE 121

Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +L   F    G + W +  +N E+N  FN  +ASDSQM 
Sbjct: 122 CVLDPTLSGSYHQLKKWIYEEDLT-LFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMI 180

Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC   F+G+ S+V+VGGG G+ A+II + FP++KC V + P V+ +L  T+NL +
Sbjct: 181 NLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSY 240

Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM QS+P ADA L K I H++ D  C ++L+ C+EAV+S   + KVII+++V+NE +
Sbjct: 241 VGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQ 300

Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ EIT  KLL D + M C+ G ERSE+EW++LF +AGF  YKI+PL G  S IEVY
Sbjct: 301 DEHEITGTKLLMD-VNMACLNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVY 356

7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone.

Glycyrrhiza echinata (taxid: 46348)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1

 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/357 (45%), Positives = 234/357 (65%), Gaps = 8/357 (2%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYKH+ +++ S+ LK AV + IP+IIH  G+P++L  LVS L+
Sbjct: 3   SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQ 62

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +K   +RR+MR L H+GFF          +E E+YALT AS+LL++    CL+P V 
Sbjct: 63  VPSSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +L   F    G   W + ++N E+N  FN  +ASDS++ 
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLT-LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175

Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L  ++NL +
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235

Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM  SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D+V+NEKK
Sbjct: 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKK 295

Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL D + M C+ G ER+E+EW++LF +AGF  YKI+PL G  S IE+Y
Sbjct: 296 DENQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1

 Score =  324 bits (831), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 234/357 (65%), Gaps = 8/357 (2%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYKH+ +++ S+ LK AVE+ IP+II   G+P++L  LVS L+
Sbjct: 3   SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQ 62

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +K   +RR+MR L H+GFF          +E E+YALT AS+LL++    CL+P V 
Sbjct: 63  VPSSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +L   F    G   W + ++N E+N  FN  +ASDS++ 
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLT-LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175

Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L  ++NL +
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235

Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM  SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D+V++EKK
Sbjct: 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKK 295

Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL D + M C+ G ER+E+EW++LF +AGF  YKI+PL G  S IE+Y
Sbjct: 296 DENQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1

 Score =  323 bits (827), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/357 (44%), Positives = 234/357 (65%), Gaps = 8/357 (2%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYKH+ +++ S+ LK AVE+ IP+II   G+P++L  LVS L+
Sbjct: 3   SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQ 62

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +K   +RR+MR L H+GFF          +E E+YALT AS+LL++    CL+P V 
Sbjct: 63  VPSSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +L   F    G   W + ++N E+N  FN  +ASDS++ 
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLT-LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175

Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L  ++NL +
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235

Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM  SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D+V+++KK
Sbjct: 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295

Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL D + M C+ G ER+E+EW++LF +AGF  YKI+PL G  S IE+Y
Sbjct: 296 DENQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 234/361 (64%), Gaps = 4/361 (1%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SS    +  EL QAQ HLYKHV +++SS+ LK A+ELGI D+IH  G+P+TLPEL +AL 
Sbjct: 4   SSSNGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALN 63

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR-EEENEAYALTSASKLLLKDKPYCLSPFV 120
            +P+K   L R +RLL H+GFF+ T V      EE  AY LT  SKLL+K    CL+P V
Sbjct: 64  LRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIV 123

Query: 121 LLVTDAAFITPGHYLSRW-LRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASD 177
                 + +       +W L  NE    F +  G + W +  +  E + L  F + +A+D
Sbjct: 124 KGALHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAAD 183

Query: 178 SQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETD 237
           S M KL +K+CKH+F+GL SLV+V GG G   ++I EAFP +KC+V + P V+A+L   +
Sbjct: 184 SHMFKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDE 243

Query: 238 NLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297
           NL F+ GDM +S+P ADA L K + HD++DE+ LK+LKNC+EA++      KVII+DI +
Sbjct: 244 NLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISI 303

Query: 298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEV 357
           +E  D  E+TE KL YD +M+T   G ER +KEWE+L +DAGF+SYKITP+ G +S IEV
Sbjct: 304 DETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEV 363

Query: 358 Y 358
           +
Sbjct: 364 F 364

2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein.

Lotus japonicus (taxid: 34305)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 2

>sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1

 Score =  318 bits (815), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 160/351 (45%), Positives = 234/351 (66%)

Query: 8   DANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKR 67
           + +EL+ AQ HLYKH+ +++SS+ LK AVELGI D IH  G+P+TLPEL S+L+  P+K 
Sbjct: 9   EESELYHAQIHLYKHIYNFVSSMALKSAVELGIADAIHNHGKPMTLPELASSLKLHPSKV 68

Query: 68  NCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAA 127
           N L R +RLL H+GFF+ T V ++ EEE  AY LT +SKLL+  K  CLS  V       
Sbjct: 69  NILYRFLRLLTHNGFFAKTTVKSNGEEEETAYVLTPSSKLLVSGKSTCLSSVVKGALHPI 128

Query: 128 FITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKD 187
            +       +W   ++    F    G N W +  ++ ++ ++F   +A+DS++ KL I++
Sbjct: 129 SLDLWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDYLSIFQDAMAADSRLFKLAIQE 188

Query: 188 CKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMN 247
            KH+F+GL SLV+V GGTG  A++I EAFP IKC+V + P V+ +L   +NL F++GDM 
Sbjct: 189 NKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVSGDMF 248

Query: 248 QSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT 307
           +S+PSADA L K + HD++DE+ LK+LK  +EA++      KVII+DI +++  D   +T
Sbjct: 249 KSVPSADAVLLKWVLHDWNDELSLKILKKSKEAISHKGKDGKVIIIDISIDDNSDDHGLT 308

Query: 308 EAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           E +L YD +M+T   G ER++KEWE+L +DAGF+ YKITP+ G +S IEVY
Sbjct: 309 ELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVY 359

3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/352 (44%), Positives = 226/352 (64%), Gaps = 7/352 (1%)

Query: 9   ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKR--GRPVTLPELVSALEFQPNK 66
           A+E+FQ QA LYKH+L ++ S  LK  VEL IPDIIH    G+P+T  ELVS L+  P K
Sbjct: 11  ASEIFQGQALLYKHLLGFIDSKCLKWMVELDIPDIIHSHSHGQPITFSELVSILQVPPTK 70

Query: 67  RNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDA 126
              ++ +MR L H+GFF   ++H++ E    AYALT+AS+LL+K     L+P V    + 
Sbjct: 71  TRQVQSLMRYLAHNGFFEIVRIHDNIE----AYALTAASELLVKSSELSLAPMVEYFLEP 126

Query: 127 AFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIK 186
                 + L RW+   +L   F    G   W +  ++  +N  FN+ +A DSQM  L  +
Sbjct: 127 NCQGAWNQLKRWVHEEDLT-VFGVSLGTPFWDFINKDPAYNKSFNEAMACDSQMLNLAFR 185

Query: 187 DCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDM 246
           DC  +F+GL S+V+VGGGTG  A+II EAFP +KC VLE P+V+ +L  ++NL F+ GDM
Sbjct: 186 DCNWVFEGLESIVDVGGGTGITAKIICEAFPKLKCMVLERPNVVENLSGSNNLTFVGGDM 245

Query: 247 NQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI 306
            + IP ADA L KL+ H+++D  C+K+L+NC+EA++      KV+++D V+NE KD+ ++
Sbjct: 246 FKCIPKADAVLLKLVLHNWNDNDCMKILENCKEAISGESKTGKVVVIDTVINENKDERQV 305

Query: 307 TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           TE KLL D  M   + G ER E++W++LF +AGF SYKI+P  G  S IE+Y
Sbjct: 306 TELKLLMDVHMACIINGKERKEEDWKKLFMEAGFQSYKISPFTGYLSLIEIY 357

S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

EC: 1

>sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1

 Score =  314 bits (805), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 169/360 (46%), Positives = 242/360 (67%), Gaps = 8/360 (2%)

Query: 6   VEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPN 65
           +    EL +AQAH++ H+ SY++S+ LKCA++LGIPD IHK G P+TL +L  AL     
Sbjct: 7   ISSKQELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKA 66

Query: 66  KRNCLRRIMRLLDHSGFFSTTKVHNSREEENE-----AYALTSASKLLLKDKPYCLSPFV 120
           K + L R+MR+L HSGFF   KV    E E+E     AY+LT AS+LLL+ +P  ++PF 
Sbjct: 67  KSHGLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFA 126

Query: 121 LLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM 180
           L ++D  +    H+LS W R N+    F T +G+    YA  +   N LFN+ +A D+  
Sbjct: 127 LAMSDPVYTETWHHLSEWFR-NDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGF 185

Query: 181 AKLIIK-DCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNL 239
              I+  +C+ IFDGL S+V+VGGGTG+ A+ I+ AFP ++C+VL+LP+V+  L  ++NL
Sbjct: 186 VNSILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENL 245

Query: 240 KFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR-EKVIIVDIVVN 298
            F++GDM   IP ADA   K I HD++DE C+K+LK C+EA++ S+    K+I+V+IV+ 
Sbjct: 246 SFVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVME 305

Query: 299 EKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           ++K+  E TE KL +D  M+  + G ERSEKEW +LFFDAGFT+YKIT +LGLRS IEV+
Sbjct: 306 DEKETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVF 365

8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether.

Mentha piperita (taxid: 34256)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
255562994	359	o-methyltransferase, putative [Ricinus c	0.994	0.994	0.587	1e-122
224116348	372	flavonoid o-methyltransferase related [P	0.983	0.948	0.585	1e-118
225443568	361	PREDICTED: isoflavone-7-O-methyltransfer	0.994	0.988	0.565	1e-118
224077038	359	flavonoid o-methyltransferase related [P	0.983	0.983	0.581	1e-116
359483947	355	PREDICTED: isoflavone-7-O-methyltransfer	0.977	0.988	0.559	1e-115
359483934	358	PREDICTED: isoflavone-7-O-methyltransfer	0.988	0.991	0.583	1e-114
225443574	358	PREDICTED: isoflavone-7-O-methyltransfer	0.988	0.991	0.566	1e-112
255562992	359	o-methyltransferase, putative [Ricinus c	0.974	0.974	0.551	1e-111
255563164	355	o-methyltransferase, putative [Ricinus c	0.986	0.997	0.516	1e-110
146148667	359	O-methyltransferase [Vitis vinifera]	0.991	0.991	0.569	1e-108

>gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/359 (58%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M S + + A EL QAQ H+Y H+ +Y++S+ LKCAV+LGIPDIIHK G+P+TLPELVSAL
Sbjct: 1   MDSTDSQKATELLQAQLHVYNHIFNYINSMCLKCAVQLGIPDIIHKHGKPITLPELVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFV 120
              P K N + R+MR+L HSGFFS TK  N +EE  E Y LT +SKLL+KD P CL PFV
Sbjct: 61  HIHPTKINFMYRLMRMLVHSGFFSITKAANGQEEGQEVYVLTPSSKLLVKDNPNCLKPFV 120

Query: 121 LLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM 180
             +    F+TPGH L  W RGNEL   F   HG+  W Y E+N EFN LFN+ +ASDS+M
Sbjct: 121 DSLLKPDFVTPGHVLGDWFRGNEL-TVFQRAHGMAFWEYNERNPEFNQLFNEAMASDSRM 179

Query: 181 AKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLK 240
             L+I+DCK IF+G++SLV+VGGG GS ARIISEAFP +KC+VLELP VI +L  T NL 
Sbjct: 180 MNLVIRDCKPIFEGVNSLVDVGGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTKNLN 239

Query: 241 FIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASS-DGREKVIIVDIVVNE 299
           ++ GDM Q IPSADA + KLI H ++DE C+K+LK C+EA++S+  G EKVI++D+V+N+
Sbjct: 240 YVGGDMFQHIPSADAIILKLILHGWNDEECVKILKKCKEAISSTGKGSEKVIVIDLVIND 299

Query: 300 KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           KKD+ E TE KLL+D LMM    G ER+EKEW  LF  AGF+ +KITP+LGLRS IEVY
Sbjct: 300 KKDEYEFTETKLLFDMLMMFVATGKERTEKEWGELFLKAGFSHFKITPILGLRSLIEVY 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/355 (58%), Positives = 260/355 (73%), Gaps = 2/355 (0%)

Query: 4   IEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQ 63
           I+ + A ELFQAQ HLY  + +Y++S+ L CA +LGIPDIIH  GRP+TLPELVSAL   
Sbjct: 19  IQEQKATELFQAQTHLYGQMFNYLNSMSLVCAAQLGIPDIIHNHGRPITLPELVSALHIP 78

Query: 64  PNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLV 123
           PNK +C+ R+MR+L HSGFF+TTK    +    EAY LT  S+LL+KD   CLSPF+ L+
Sbjct: 79  PNKSSCIYRLMRMLVHSGFFATTKAVIGQGGGGEAYVLTPPSQLLVKDNTNCLSPFMSLI 138

Query: 124 TDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKL 183
            + AF+TP H L  W RG+E P  F   +G+  W Y  QN E N LFN  +A DSQM  L
Sbjct: 139 -NPAFVTPWHSLGDWFRGSE-PTAFQQAYGMAFWEYNNQNPELNGLFNAAMACDSQMMNL 196

Query: 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA 243
           +I+DCK IF+GL S+V+VGGGTGS ARIISE FP + C+VLE+P VIA+L  T+NLK++ 
Sbjct: 197 VIRDCKPIFEGLDSMVDVGGGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENLKYVG 256

Query: 244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303
           GDM Q IPSADA L KLIFH + DE C+K+LK C+EA++S +   KVIIVD+V+NEKKD+
Sbjct: 257 GDMFQHIPSADAVLLKLIFHGWSDEDCVKILKKCKEAISSKEKGGKVIIVDVVINEKKDE 316

Query: 304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
            E+TE KLL+D LMM    G ERS +EWERLF +AGF+ YKIT L GLRS IEVY
Sbjct: 317 HELTETKLLFDMLMMVVAAGKERSVEEWERLFLEAGFSHYKITSLFGLRSLIEVY 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 269/361 (74%), Gaps = 4/361 (1%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M  I  E  +ELFQAQ+H+YKH+ ++++S+ LKCAVELGIPDIIH    P++LP+LVSAL
Sbjct: 1   MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL-KDKPYC--LS 117
              P K   + R+MR+L HSGFF+T KVH ++EEE+E Y LT++S+LLL KD      LS
Sbjct: 61  HLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVPNLS 120

Query: 118 PFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASD 177
            FVL + D   +TP H+L  W RGN+L   F T HG + W Y   +H+F NLFN+ +ASD
Sbjct: 121 AFVLAMLDPVLVTPWHFLGDWFRGNDL-TAFDTAHGKSFWDYGSHDHKFFNLFNEAMASD 179

Query: 178 SQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETD 237
           S+M  L+IKDC+ +F+GL SLV+VGGG G  ARIISEAFP +KC+V +LPHV+++ PE  
Sbjct: 180 SRMMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECG 239

Query: 238 NLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297
           NLK++ GDM QS+P+ADA L KL+ H   DE C+K+LK CREA+ S +   KVI++DIV+
Sbjct: 240 NLKYVGGDMFQSVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVIDIVI 299

Query: 298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEV 357
           NEKK++ +ITEAKLL+D LMMT V G ER+EKEWE+LF +AGF+ YKI P+ GLRS IEV
Sbjct: 300 NEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEV 359

Query: 358 Y 358
           +
Sbjct: 360 F 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/356 (58%), Positives = 260/356 (73%), Gaps = 3/356 (0%)

Query: 4   IEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQ 63
           I+ + A ELFQA  HL+  + +Y++S+ L CA +LGIPDIIH  GRP+TLP LVSAL   
Sbjct: 5   IQDQKATELFQAHTHLHSQMFNYINSMSLMCAAQLGIPDIIHNHGRPITLPHLVSALHIA 64

Query: 64  PNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSASKLLLKDKPYCLSPFVLL 122
           PNK + + R+MR+L HSGFF+TTK  N + E E EAY LT  S+LL+KD   CLSPF+ L
Sbjct: 65  PNKTSIIYRLMRMLVHSGFFATTKAANGQGEGEEEAYVLTPPSQLLVKDNTNCLSPFMSL 124

Query: 123 VTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAK 182
           + + AF+TP   L  W RGNE P  F   +G+  W Y  QN E N LFN+ +A DSQM  
Sbjct: 125 I-NPAFVTPWLSLGDWFRGNE-PTAFEHAYGMAFWEYHNQNPELNRLFNEAMACDSQMMN 182

Query: 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFI 242
           L+I+DCK IF+GL+S+V+VGGGTGS +RIISEAFP + C+VLELP VI +L  T NL ++
Sbjct: 183 LVIRDCKPIFEGLNSMVDVGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNLNYV 242

Query: 243 AGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD 302
            GDM Q IPSADA L KLIFH + DE CLK+LK C+EA++S +   KVIIVD+V++EKKD
Sbjct: 243 GGDMFQHIPSADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVIDEKKD 302

Query: 303 KPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           + E+TE KLL+D LMM    G ERS KEWE+LF +AGF+ YKITPL GLRS IEVY
Sbjct: 303 EKELTETKLLFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVY 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483947|ref|XP_003633042.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 2 [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 266/361 (73%), Gaps = 10/361 (2%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M  I  E  +ELFQAQ+H+YKH+ ++++S+ LKCAVELGIPDIIH    P++LP+LVSAL
Sbjct: 1   MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL-KDKPYC--LS 117
              P K   + R+MR+L HSGFF+T KVH ++EEE+E Y LT++S+LLL KD      LS
Sbjct: 61  HLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVPNLS 120

Query: 118 PFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASD 177
            FVL + D   +TP H+L  W RGN+L   F T HG + W Y   +H+F NLFN+ +ASD
Sbjct: 121 AFVLAMLDPVLVTPWHFLGDWFRGNDL-TAFDTAHGKSFWDYGSHDHKFFNLFNEAMASD 179

Query: 178 SQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETD 237
           S+M  L+IKDC+ +F+GL SLV+VGGG G  ARIISEAFP +KC+V +LPHV+++ PE  
Sbjct: 180 SRMMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECG 239

Query: 238 NLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297
           NLK++ GDM QS+P+ADA L K       DE C+K+LK CREA+ S +   KVI++DIV+
Sbjct: 240 NLKYVGGDMFQSVPTADAILLK------GDEECVKILKKCREAIPSKEKGGKVIVIDIVI 293

Query: 298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEV 357
           NEKK++ +ITEAKLL+D LMMT V G ER+EKEWE+LF +AGF+ YKI P+ GLRS IEV
Sbjct: 294 NEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEV 353

Query: 358 Y 358
           +
Sbjct: 354 F 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483934|ref|XP_003633039.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/360 (58%), Positives = 266/360 (73%), Gaps = 5/360 (1%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M  I  E A ELFQAQ+H+YKH+ S+M+S+ LKCAV+LGIPDIIH    P TLP+LVSAL
Sbjct: 1   MDLIHGEGAGELFQAQSHMYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTTLPQLVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYC-LSPF 119
              P K +C+ R+MRLL HSGFF+  KVH    EE E Y LT +S+LL KD P   LSPF
Sbjct: 61  HIPPTKASCVHRLMRLLVHSGFFAIAKVH--EHEEEEGYILTPSSRLLFKDNPTSNLSPF 118

Query: 120 VLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ 179
           VL V   A +TP H+   WLRG++L   F T HG++ W +   N E  NLFN+G+ASDSQ
Sbjct: 119 VLTVLHPALVTPWHFFGDWLRGDDL-TAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQ 177

Query: 180 MAKLI-IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDN 238
           M  ++  ++ K +F+GLSSLV++GGGTG  ARIISEAFP +KC+V +LPHV+A+LPE+ N
Sbjct: 178 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRN 237

Query: 239 LKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298
           L+++ GDM QS+PSADA L K + HD+ DE CLK+LK CREA+ S +   KVII+D+V+N
Sbjct: 238 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVIN 297

Query: 299 EKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           EKKD+ +ITE KLL D +MMT V G ER+EKEWERLF +AGF  YKITP+ GLRS IEV+
Sbjct: 298 EKKDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVF 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443574|ref|XP_002278208.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 265/360 (73%), Gaps = 5/360 (1%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M  I  E A ELFQAQ+H+YKH+ S+M+S+ L+CAV+LGIPDIIH    P TLP+LVSAL
Sbjct: 1   MDLIHGEGAGELFQAQSHMYKHICSFMNSMALRCAVQLGIPDIIHNHAHPTTLPQLVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYC-LSPF 119
              P K +C+ R+MRLL HSGFF+  KVH    EE E Y LT +S+LLLKD P   LSP 
Sbjct: 61  HIPPTKASCVHRLMRLLVHSGFFAMAKVH--EHEEEEGYILTPSSRLLLKDNPTSNLSPL 118

Query: 120 VLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ 179
           VL +     +TP H+   WLRG++L   F T HG++ W +   N E  NLFN+G+ASDSQ
Sbjct: 119 VLTMLHPVLVTPWHFFGDWLRGDDL-TAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQ 177

Query: 180 MAKLI-IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDN 238
           M  ++  ++ K +F+GLSSLV++GGGTG  ARIISEAFP +KC+V +LPHV+A+LPE+ N
Sbjct: 178 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRN 237

Query: 239 LKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298
           L+++ GDM QS+PSADA L K + HD+ DE CLK+LK CREA+ S +   KVII+D+V+N
Sbjct: 238 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVIN 297

Query: 299 EKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           EKKD+ +ITE KLL D +MMT V G ER+EKEWE+LF +AGF  +KI+P+ GLRS IEV+
Sbjct: 298 EKKDEDDITETKLLMDMMMMTLVNGRERNEKEWEKLFLEAGFRHHKISPIFGLRSLIEVF 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562992|ref|XP_002522500.1| o-methyltransferase, putative [Ricinus communis] gi|223538191|gb|EEF39800.1| o-methyltransferase, putative [Ricinus communis]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/352 (55%), Positives = 255/352 (72%), Gaps = 2/352 (0%)

Query: 8   DANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKR 67
           +ANELFQAQ H+YKH+  Y+ S+ LKCAV+LGIPDIIHK  +P+TL EL SAL+  P K 
Sbjct: 8   EANELFQAQCHIYKHMYHYLESMSLKCAVQLGIPDIIHKHNKPMTLLELASALDIPPAKA 67

Query: 68  NCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAA 127
           NCL+R++R+L HSGFF+  KVH+  E E + Y LT++S+LLLKD P  LSPF L + + A
Sbjct: 68  NCLQRVIRILVHSGFFTIAKVHDQEEVEEDGYVLTTSSRLLLKDSPTTLSPFALAMLNPA 127

Query: 128 FITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKD 187
            ITP   LS W +GN+L   F T HG + W Y ++N +F    N+G+A DSQ+  LI+KD
Sbjct: 128 LITPWFSLSEWYQGNQLT-AFETYHGKDFWQYGKENQDFIKSLNEGMACDSQLVSLIVKD 186

Query: 188 CKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMN 247
            K IF+G++SLV+VGGGTG+ AR I++A+P + C+VL+LP V+A+L ET N+KF+AGDM 
Sbjct: 187 HKEIFEGVASLVDVGGGTGTLARAIADAYPLMTCAVLDLPQVVANLQETKNMKFVAGDMF 246

Query: 248 QSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT 307
            SIPSADA L K + H++ DE C+K+LK CREA+ S D   KVII+++V+NEKKD+ E+ 
Sbjct: 247 HSIPSADAILIKSVLHNWSDEACIKILKRCREAIQSKDEGGKVIIIEVVINEKKDECEVV 306

Query: 308 E-AKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           E  KL  D  MM    G ER+E+EW RLF +AGF  YKIT   GL S IEVY
Sbjct: 307 EKTKLFMDMEMMLICTGKERNEEEWARLFLEAGFNHYKITATSGLNSIIEVY 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563164|ref|XP_002522586.1| o-methyltransferase, putative [Ricinus communis] gi|223538277|gb|EEF39886.1| o-methyltransferase, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/358 (51%), Positives = 259/358 (72%), Gaps = 4/358 (1%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M S++   A +L QAQ H+Y H+ + ++S+ LKC+V+LGIPDII   G+P+TLPELVSAL
Sbjct: 1   MDSVQSPKATDLLQAQTHIYNHIFNNLNSMCLKCSVQLGIPDIIQNHGKPITLPELVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFV 120
              P K  CL R+MR+L +SGFF TT+  + +E    AY LT +++LL+KD P CLS FV
Sbjct: 61  NIHPGKTTCLYRLMRMLVYSGFFVTTETPDGQE----AYDLTPSTRLLVKDNPNCLSSFV 116

Query: 121 LLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM 180
           + +    ++  GHYL  W + N+L   +   HG+  W Y E++ E+N +FN+ +ASDS+M
Sbjct: 117 IALLWPDYVAAGHYLGDWFKNNKLDTVYDQAHGMEFWEYNERHPEYNQIFNESMASDSRM 176

Query: 181 AKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLK 240
             L+I DCK IF+GL+S+V+VGGG GS ARIIS+ FP ++C+VL+   V+  L  + NL 
Sbjct: 177 MNLVIGDCKPIFEGLNSVVDVGGGNGSLARIISQNFPHMQCTVLDRAQVVGSLEGSKNLN 236

Query: 241 FIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300
           ++ GDM + +PSADA + KL+ H ++DE C+++LKNCREA+AS     KVI++DIVV+EK
Sbjct: 237 YVPGDMFKHVPSADAAILKLVLHCWNDEECIRILKNCREAIASKGKGGKVIVIDIVVDEK 296

Query: 301 KDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           K++ E+TE KLL+D LMM  V G ER+EKEW+RLF +AGF+ YKITPLLG+RS IEVY
Sbjct: 297 KEQDELTETKLLFDILMMVVVNGTERTEKEWKRLFLEAGFSHYKITPLLGVRSLIEVY 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146148667|gb|ABQ02271.1| O-methyltransferase [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/360 (56%), Positives = 262/360 (72%), Gaps = 4/360 (1%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           M  I  E A ELFQAQ+H+YKH+ S+M+S+ LKCAV+LGIPDIIH    P  LP+LVSAL
Sbjct: 1   MDLIHGEGAGELFQAQSHMYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTNLPQLVSAL 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYC-LSPF 119
              P K +C+ R+MRLL HSGFF+  KVH    EE E Y LT +S+LLLKD P   LSPF
Sbjct: 61  HIPPTKASCVHRLMRLLVHSGFFAIAKVH--EHEEEEGYILTPSSRLLLKDNPTSNLSPF 118

Query: 120 VLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ 179
           VL V     +TP H+   WLRG++    F T HG++ W +   N E  NLFN+GLASDSQ
Sbjct: 119 VLTVLHPVLVTPWHFFGDWLRGDDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGLASDSQ 178

Query: 180 MAKLI-IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDN 238
           M  ++  ++ K +F+GLSSLV++GGGTG  ARIISE FP +KC+V +LPHV+A+LPE+ N
Sbjct: 179 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEVFPQLKCTVFDLPHVVANLPESRN 238

Query: 239 LKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298
           L+++ GDM QS+PSADA L K + HD+ DE CLK+LK CREA+   + R K+II+DIV+N
Sbjct: 239 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIPREEERGKIIIIDIVIN 298

Query: 299 EKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           EKKD+ +I E KLL D +MMT V G ER+EKEWE+LF +AGF  +KITP+ GLRS IEV+
Sbjct: 299 EKKDEDDIAETKLLMDMMMMTLVNGRERNEKEWEKLFLEAGFRHHKITPIFGLRSLIEVF 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
UNIPROTKB|Q6VMW0	366	OMT2 "8-hydroxyquercetin 8-O-m	0.980	0.961	0.469	2.3e-87
UNIPROTKB|Q84KK4	365	HI4'OMT "Isoflavone 4'-O-methy	0.988	0.972	0.480	6.9e-86
UNIPROTKB|Q84KK6	367	HI4'OMT "Isoflavone 4'-O-methy	0.966	0.945	0.477	6.2e-85
UNIPROTKB|Q84KK5	357	D7OMT "Isoflavone 7-O-methyltr	0.983	0.988	0.466	4.4e-84
UNIPROTKB|B0EXJ8	355	16OMT "Tabersonine 16-O-methyl	0.955	0.966	0.426	1.3e-70
UNIPROTKB|Q8GSN1	348	Q8GSN1 "Myricetin O-methyltran	0.947	0.977	0.410	5.5e-70
UNIPROTKB|A8QW53	374	OMT3 "5-pentadecatrienyl resor	0.746	0.716	0.386	1.3e-50
TAIR|locus:2132806	382	AT4G35160 [Arabidopsis thalian	0.949	0.892	0.342	9.8e-48
TAIR|locus:2132801	325	AT4G35150 [Arabidopsis thalian	0.571	0.630	0.361	1.4e-44
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.857	0.848	0.327	1.9e-37

UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 169/360 (46%), Positives = 242/360 (67%)

Query:     6 VEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPN 65
             +    EL +AQAH++ H+ SY++S+ LKCA++LGIPD IHK G P+TL +L  AL     
Sbjct:     7 ISSKQELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKA 66

Query:    66 KRNCLRRIMRLLDHSGFFSTTKVH-----NSREEENEAYALTSASKLLLKDKPYCLSPFV 120
             K + L R+MR+L HSGFF   KV         EEE +AY+LT AS+LLL+ +P  ++PF 
Sbjct:    67 KSHGLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFA 126

Query:   121 LLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM 180
             L ++D  +    H+LS W R N+    F T +G+    YA  +   N LFN+ +A D+  
Sbjct:   127 LAMSDPVYTETWHHLSEWFR-NDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGF 185

Query:   181 AKLIIK-DCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNL 239
                I+  +C+ IFDGL S+V+VGGGTG+ A+ I+ AFP ++C+VL+LP+V+  L  ++NL
Sbjct:   186 VNSILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENL 245

Query:   240 KFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR-EKVIIVDIVVN 298
              F++GDM   IP ADA   K I HD++DE C+K+LK C+EA++ S+    K+I+V+IV+ 
Sbjct:   246 SFVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVME 305

Query:   299 EKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             ++K+  E TE KL +D  M+  + G ERSEKEW +LFFDAGFT+YKIT +LGLRS IEV+
Sbjct:   306 DEKETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVF 365

GO:0009812 "flavonoid metabolic process" evidence=IDA

GO:0030761 "8-hydroxyquercitin 8-O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 174/362 (48%), Positives = 238/362 (65%)

Query:     2 SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
             SS   ED  EL QAQ HLYKHV +++SS+ LK A+ELGI D+IH  G+P+TLPEL +AL 
Sbjct:     5 SSNGSEDT-ELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALN 63

Query:    62 FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR-EEENEAYALTSASKLLLKDKPYCLSPFV 120
              +P+K   L R +RLL H+GFF+ T V      EE  AY LT  SKLL+K    CL+P V
Sbjct:    64 LRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIV 123

Query:   121 LLVTDAAFITPGHYLSRW-LRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASD 177
                   + +       +W L  NE    F +  G + W +  +  E + L  F + +A+D
Sbjct:   124 KGALHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAAD 183

Query:   178 SQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETD 237
             S M KL +K+CKH+F+GL SLV+V GG G   ++I EAFP +KC+V + P V+A+L   +
Sbjct:   184 SHMFKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDE 243

Query:   238 NLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGRE-KVIIVDIV 296
             NL F+ GDM +S+P ADA L K + HD++DE+ LK+LKNC+EA+ S  G+E KVII+DI 
Sbjct:   244 NLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAI-SGRGKEGKVIIIDIS 302

Query:   297 VNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIE 356
             ++E  D  E+TE KL YD +M+T   G ER +KEWE+L +DAGF+SYKITP+ G +S IE
Sbjct:   303 IDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIE 362

Query:   357 VY 358
             V+
Sbjct:   363 VF 364

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 170/356 (47%), Positives = 238/356 (66%)

Query:    11 ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCL 70
             EL+ AQ HLYKHV +++SS+ LK A+ELGI D+IH  G+P+TLPEL SAL+  P+K   L
Sbjct:    12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGIL 71

Query:    71 RRIMRLLDHSGFFSTTKV--HNSR---EEENEAYALTSASKLLLKDKPYCLSPFVLLVTD 125
              R +RLL H+GFF+ T V   N +   EEE  AYALT  SKLL+K KP CL+  V     
Sbjct:    72 YRFLRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALH 131

Query:   126 AAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASDSQMAKL 183
              + +       +W + ++    F +  G + W +  ++ E   L  F + +A+DSQM KL
Sbjct:   132 PSSLDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMFKL 191

Query:   184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA 243
              +K+C+H+F+GL SLV+VGGGTG   ++I E FP +KC+V + P V+ +L   +NLKF+ 
Sbjct:   192 ALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFVG 251

Query:   244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGRE-KVIIVDIVVNEKKD 302
             GDM +SIP ADA L K + HD++DE+ LK+LKN +EA+ S  G+E KVII+DI ++E   
Sbjct:   252 GDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAI-SGKGKEGKVIIIDISIDEASG 310

Query:   303 KPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
               E+TE +L YD +M+T   G ER +KEWE+L  DAGF+SYKITP+ G +S IEV+
Sbjct:   311 DRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVF 366

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 167/358 (46%), Positives = 237/358 (66%)

Query:     2 SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
             SSI     +E+FQ QA LY+H+ +++ S+ LK  VEL IP+IIH  G+P+T+ ELVS L+
Sbjct:     3 SSINGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILK 62

Query:    62 FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
                 K   ++RIMR + H+GFF   ++    +EENEAYALT+AS+LL+K    CL+P V 
Sbjct:    63 VPQTKAGNVQRIMRYMAHNGFFERVRIQEE-QEENEAYALTAASELLVKGSELCLAPMVE 121

Query:   122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
              V D       H L +W+   +L   F    G + W +  +N E+N  FN  +ASDSQM 
Sbjct:   122 CVLDPTLSGSYHQLKKWIYEEDLT-LFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMI 180

Query:   182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
              L ++DC   F+G+ S+V+VGGG G+ A+II + FP++KC V + P V+ +L  T+NL +
Sbjct:   181 NLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSY 240

Query:   242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGRE-KVIIVDIVVNEK 300
             + GDM QS+P ADA L K I H++ D  C ++L+ C+EAV SSDG + KVII+++V+NE 
Sbjct:   241 VGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAV-SSDGEKGKVIIIEMVINEN 299

Query:   301 KDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             +D+ EIT  KLL D + M C+ G ERSE+EW++LF +AGF  YKI+PL G  S IEVY
Sbjct:   300 QDEHEITGTKLLMD-VNMACLNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVY 356

GO:0009717 "isoflavonoid biosynthetic process" evidence=IDA

GO:0033800 "isoflavone 7-O-methyltransferase activity" evidence=IDA

UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 152/356 (42%), Positives = 229/356 (64%)

Query:    10 NELFQ-AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL--EFQPNK 66
             +E F+ AQA ++    S+++S  LKCAV+LGIPD I   G+P+TL EL +AL     P+K
Sbjct:     5 SEEFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSK 64

Query:    67 RNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDA 126
                + R+MR+L  +GF S  ++    E     Y+LT +S++LLK +P  L   VL + D 
Sbjct:    65 APFIYRLMRVLAKNGFCSEEQLDGETEP---LYSLTPSSRILLKKEPLNLRGIVLTMADP 121

Query:   127 AFITPGHYLSRWLRG-NELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM-AKLI 184
               +     LS W +  ++    F T HG N WGY+ ++ E    FN+ +ASDSQ+ +KL+
Sbjct:   122 VQLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLL 181

Query:   185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAG 244
             I + K +F+GL+SLV++GGGTG+ A+ I++ FP +KC+V +LPHV+A+L   +N++F+AG
Sbjct:   182 IGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAG 241

Query:   245 DMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV-NEKKDK 303
             DM + IPSA+A   K I HD++DE C+K+LK+C++A+ +  G  KVII+D+V+ ++KKD 
Sbjct:   242 DMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKGG--KVIIIDMVMYSDKKDD 299

Query:   304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGL-RSFIEVY 358
               + + +   D  M+      ER EKEW  LF +AGF+ YKI P L   RS IEVY
Sbjct:   300 -HLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVY 354

GO:0005737 "cytoplasm" evidence=IDA

GO:0009821 "alkaloid biosynthetic process" evidence=IDA

GO:0030766 "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 145/353 (41%), Positives = 225/353 (63%)

Query:     9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRN 68
             ++E+  AQAH +  V S+ S   LKCAV+LGIPD IH  G+P+ L +L ++L   P+K  
Sbjct:     5 SSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAP 64

Query:    69 CLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAF 128
              + R+MR+L  +G+FS        EEE   Y+LT  ++LLLK+ P      VL V   A 
Sbjct:    65 YIYRLMRILVAAGYFS--------EEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAE 116

Query:   129 ITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM-AKLIIKD 187
             +   + +S W +  +L   F T HG N W +  ++ ++   F+  +A+DS + +K++I +
Sbjct:   117 LKAWNAMSEWFQNEDLT-AFETAHGKNFWDFGAED-KYGKNFDGVMAADSILVSKMLIPE 174

Query:   188 CKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMN 247
               ++F+GL SLV+VGGGTG+ A+ I+++FP +KC+V +LPHV+A+L  T+NL+F+ GDM 
Sbjct:   175 FNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDMF 234

Query:   248 QSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV--NEKKDKPE 305
             + IPSA+A L K I HD+ DE C+K+LK CR+A+   +   KVI+++ V+  ++K +  E
Sbjct:   235 EKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEE 294

Query:   306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
               +A++  D  MM      ER+E+EW  LF +AGF+ YKI P++  RS IEVY
Sbjct:   295 AVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVY 347

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 109/282 (38%), Positives = 170/282 (60%)

Query:    90 NSREEENE-AYALTSASKLLLKDKPYC---LSPFVLLVTDAAFITP-GHYLSRWLRGNE- 143
             +S  +  E  Y LT+AS LL+  +      LSP +  V      +P    L+ W R +E 
Sbjct:    93 SSESDGREPVYKLTTASSLLVSSESSATASLSPMLNHVLSPFRDSPLSMGLTAWFRHDED 152

Query:   144 --LPD--PFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ-MAKLIIKDCKHIFDGLSSL 198
                P   PF   +G  +W    ++   N LFN  +A+DS  + ++++K+   +F G+ SL
Sbjct:   153 EQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSL 212

Query:   199 VEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETD--NLKFIAGDMNQSIPSADAF 256
             V+V GG G     I+ AFP +KC+VL+LPHV+A  P +   N++F+ GDM +SIP A+  
Sbjct:   213 VDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVV 272

Query:   257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL 316
             L K I HD+ ++ C+K+LKNC++A+ S D   K+II+D+VV       ++ E +++YD  
Sbjct:   273 LLKWILHDWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYDLH 332

Query:   317 MMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             +M  + G+ER E+EW+++F +AGF  YKI P+LGLRS IE+Y
Sbjct:   333 LMK-IGGVERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELY 373

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 125/365 (34%), Positives = 197/365 (53%)

Query:    10 NELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDII--HKRGRPVTLPELVSALEFQPNKR 67
             +E  +A   ++K+V  +      KCA++L IP+ I  H   +PVTL EL SA+   P+  
Sbjct:    24 DEEAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLAELSSAVSASPSH- 82

Query:    68 NCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL--KDKPYCLSPFVLLVTD 125
               LRRIMR L H G F   K   +++     Y  T  S+ L+  +     L+PFVL  T 
Sbjct:    83 --LRRIMRFLVHQGIF---KEIPTKDGLATGYVNTPLSRRLMITRRDGKSLAPFVLFETT 137

Query:   126 AAFITPGHYLSRWLRG---NELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ-MA 181
                + P   LS  +        P PF   HG ++W +A+ N   +++ N+ +A D++ + 
Sbjct:   138 PEMLAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVV 197

Query:   182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
               +   C  +FDG++++V+VGGGTG    ++ + FP IK    +LPHVI      D ++ 
Sbjct:   198 PRVAGACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVEN 257

Query:   242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
             + GDM  SIP+ DA   K + HD+ D+ C+K+LKNC+EAV  + G  KV+IV+ V+ E K
Sbjct:   258 VEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNIG--KVLIVESVIGENK 315

Query:   302 ------DKPEITE-AKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKITPLLGLRS 353
                   ++ E  E  +L+ D +MM     G ER+ KEW+ +  +AGF  Y++  +  ++S
Sbjct:   316 KTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQS 375

Query:   354 FIEVY 358
              I  Y
Sbjct:   376 LIIAY 380

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 78/216 (36%), Positives = 128/216 (59%)

Query:   152 HGINIWGYAEQNHEFNNLFNQGLASDSQ-MAKLIIKDCKHIFDGLSSLVEVGGGTGSFAR 210
             HG ++W +A+ N   + L N+ +A D++ +   +   C+ +FDG++++V+VGGGTG    
Sbjct:   110 HGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETMG 169

Query:   211 IISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVC 270
             I+ + FP IK    +LPHVI      D ++ + GDM  SIP++DA + K + HD+ D+ C
Sbjct:   170 ILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKDC 229

Query:   271 LKLLKNCREAVASSDGREKVIIVDIVVNEKKDK-------PEITEAKLLYDALMMTCVP- 322
             +K+LKNC+EAV  + G  KV+IV+ V+ EKK+         ++   +L  D +MM     
Sbjct:   230 IKILKNCKEAVLPNIG--KVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTST 287

Query:   323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             G ER+ KEW+ +  +AGF  Y++     ++S I  Y
Sbjct:   288 GKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 104/318 (32%), Positives = 168/318 (52%)

Query:    32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQ-PNKRNCLRRIMRLLDHSGFFSTTKVHN 90
             LK A+EL + +I+ K G P++  E+ S L  + P     L RI+RLL      + +    
Sbjct:    36 LKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKL 95

Query:    91 SREEENEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFV 149
             S +     Y L    K L K++    ++   L+  D   +   ++L   +    +P  F 
Sbjct:    96 SGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIP--FN 153

Query:   150 TGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSF 208
               +G++ + Y   +  FN +FN G+++ S +  K I++  K  F+GL+SLV+VGGG G+ 
Sbjct:   154 KAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG-FEGLTSLVDVGGGIGAT 212

Query:   209 ARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDE 268
              ++I   +P++K    +LPHVI D P    ++ + GDM  S+P  DA   K I HD+ DE
Sbjct:   213 LKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDE 272

Query:   269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG-IERS 327
              C+K LKNC E++   DG  KVI+ + ++ E  D    T+  +  D +M+   PG  ER+
Sbjct:   273 HCVKFLKNCYESLPE-DG--KVILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERT 329

Query:   328 EKEWERLFFDAGFTSYKI 345
             EKE+E L   +GF   K+
Sbjct:   330 EKEFEALAKASGFKGIKV 347

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: FOMT8 flavonoid o-methyltransferase related (372 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	6e-81
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	2e-14
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	6e-09
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  246 bits (631), Expect = 6e-81
 Identities = 100/244 (40%), Positives = 139/244 (56%), Gaps = 7/244 (2%)

Query: 93  EEENEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTG 151
               E Y LT ASKLL+K +    L+P +L+  D   +    +L   +R      PF   
Sbjct: 1   TRGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGG--PPFERA 58

Query: 152 HGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARI 211
            G+  + Y   + EFN +FN+ +A+ S++    I +    F GLSSLV+VGGGTG+ A  
Sbjct: 59  FGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAA 118

Query: 212 ISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCL 271
           I  A+P IK  V +LPHVIAD P  D ++F+ GD  +S+P ADA L K + HD+ DE C+
Sbjct: 119 IVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCV 178

Query: 272 KLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331
           K+LK C EA+    G  KVI+V++V+ E  D    TE  LL D  M+    G ER+EKEW
Sbjct: 179 KILKRCYEAL-PPGG--KVIVVEMVLPEDPDDDLETEV-LLLDLNMLVLNGGKERTEKEW 234

Query: 332 ERLF 335
            +L 
Sbjct: 235 RKLL 238

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQ-PNKRNCLRRIMRLL 77
          LKCA+ELGIPDII K G+P++  EL S L    P     L R++RLL
Sbjct: 3  LKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLL 49

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 57/288 (19%), Positives = 116/288 (40%), Gaps = 55/288 (19%)

Query: 32  LKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNS 91
           +K A+EL +   +     P  L  L +     P +   L  ++  L      +       
Sbjct: 7   MKAAIELDLFSHM--AEGPKDLATLAADTGSVPPR---LEMLLETLRQMRVIN------- 54

Query: 92  REEENEAYALTSASKLLLKD----KPYCLSPFVLLVTDAAFITPGHYL--SRWLRG---- 141
              E+  ++LT  +  +            +P    +     +    Y+  S+ +RG    
Sbjct: 55  --LEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF---LADDFYMGLSQAVRGQKNF 109

Query: 142 -NELPDPFVTGHGINIWGYAEQNHEFN-NLFNQGLASDSQMAKLIIKDCKHIFDGLSSLV 199
             ++P P VT      +   E+ H  N     Q L  ++++  +              ++
Sbjct: 110 KGQVPYPPVTREDNLYF---EEIHRSNAKFAIQLLLEEAKLDGV------------KKMI 154

Query: 200 EVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDM-NQSIP 251
           +VGGG G  +  + + FP +  ++L LP  I  + E        D ++ IA D+  +S P
Sbjct: 155 DVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214

Query: 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299
            ADA LF  I +  ++++   + K   +A+ S     +++I+D+V+++
Sbjct: 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG---RLLILDMVIDD 259

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPET------DNLKFIAGDMNQ 248
           + ++++G GTGS A  ++  FP  + + ++L P ++    E         + F+ GD   
Sbjct: 3   ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62

Query: 249 SIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR 287
           ++   +   F  +F        L+LL      +    GR
Sbjct: 63  ALDLLEG--FDAVFIGGGGGDLLELLDALASLLK-PGGR 98

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.82
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.79
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.78
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.77
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.76
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.75
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.75
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.71
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.71
PLN02244	340	tocopherol O-methyltransferase	99.71
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.68
PLN02490	340	MPBQ/MSBQ methyltransferase	99.67
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.67
PLN02336	475	phosphoethanolamine N-methyltransferase	99.65
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.64
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.63
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.63
PRK11207	197	tellurite resistance protein TehB; Provisional	99.63
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.63
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.62
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.62
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.61
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.61
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.61
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.6
PRK06922	677	hypothetical protein; Provisional	99.59
PRK05785	226	hypothetical protein; Provisional	99.58
PRK08317	241	hypothetical protein; Provisional	99.58
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.58
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.58
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.55
PRK06202	232	hypothetical protein; Provisional	99.55
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.51
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.5
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.5
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.48
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.48
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.47
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.47
PRK12335	287	tellurite resistance protein TehB; Provisional	99.46
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.46
PRK04266	226	fibrillarin; Provisional	99.45
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.45
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.44
PLN02336	475	phosphoethanolamine N-methyltransferase	99.44
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.44
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.41
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.41
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.4
TIGR03438	301	probable methyltransferase. This model represents	99.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.37
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.36
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.36
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.35
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.35
PLN03075	296	nicotianamine synthase; Provisional	99.34
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.33
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.32
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.32
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.3
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.29
PTZ00146	293	fibrillarin; Provisional	99.28
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.28
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.26
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.26
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.25
KOG2361	264	consensus Predicted methyltransferase [General fun	99.24
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.23
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.23
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.21
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.21
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.18
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.17
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.16
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.15
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.15
PRK14968	188	putative methyltransferase; Provisional	99.15
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.14
KOG4300	252	consensus Predicted methyltransferase [General fun	99.11
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.1
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.1
PHA03411	279	putative methyltransferase; Provisional	99.1
COG4123	248	Predicted O-methyltransferase [General function pr	99.1
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.09
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.09
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.09
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.08
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.05
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.04
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.04
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.04
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.03
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.02
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.99
PRK14967	223	putative methyltransferase; Provisional	98.98
PRK07402	196	precorrin-6B methylase; Provisional	98.98
PRK04457	262	spermidine synthase; Provisional	98.97
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.96
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.94
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.92
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.91
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.91
KOG1271	227	consensus Methyltransferases [General function pre	98.9
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.89
TIGR00438	188	rrmJ cell division protein FtsJ.	98.89
COG2890	280	HemK Methylase of polypeptide chain release factor	98.87
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.86
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.86
KOG2899	288	consensus Predicted methyltransferase [General fun	98.84
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.84
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.8
PRK01581	374	speE spermidine synthase; Validated	98.79
PRK00811	283	spermidine synthase; Provisional	98.78
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.74
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.71
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.69
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.69
PRK03612	521	spermidine synthase; Provisional	98.67
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.67
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.67
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.67
PLN02366	308	spermidine synthase	98.66
PLN02672	1082	methionine S-methyltransferase	98.66
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.64
PHA03412	241	putative methyltransferase; Provisional	98.62
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.61
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.6
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.59
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.57
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.55
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.54
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.53
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.53
KOG3010	261	consensus Methyltransferase [General function pred	98.52
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.5
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.5
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.5
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.5
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.49
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.49
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.42
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.41
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.4
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.38
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.38
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.38
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.37
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.35
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.34
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.33
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.3
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.29
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.26
PRK04148	134	hypothetical protein; Provisional	98.26
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.25
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.21
PLN02476	278	O-methyltransferase	98.21
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.2
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.17
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.16
KOG1331	293	consensus Predicted methyltransferase [General fun	98.15
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.15
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.14
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.13
COG4122	219	Predicted O-methyltransferase [General function pr	98.12
PLN02823	336	spermine synthase	98.12
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.11
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.09
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.07
PRK00536	262	speE spermidine synthase; Provisional	98.02
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.99
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.99
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.97
KOG2940	325	consensus Predicted methyltransferase [General fun	97.94
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.94
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.93
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.93
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.92
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.92
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.91
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.88
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.83
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.8
COG2521	287	Predicted archaeal methyltransferase [General func	97.79
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.79
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.79
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.75
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.74
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.73
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.73
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.7
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.61
KOG2904	328	consensus Predicted methyltransferase [General fun	97.59
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.51
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.5
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.47
COG4798	238	Predicted methyltransferase [General function pred	97.46
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.45
PF13679	141	Methyltransf_32: Methyltransferase domain	97.36
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.35
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.32
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.3
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.28
KOG3115	249	consensus Methyltransferase-like protein [General	97.21
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.21
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.19
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.12
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.07
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.06
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.06
COG4076	252	Predicted RNA methylase [General function predicti	97.05
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.05
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.03
COG3897	218	Predicted methyltransferase [General function pred	97.0
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.0
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.98
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.97
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.95
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.94
COG4301	321	Uncharacterized conserved protein [Function unknow	96.93
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.85
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.79
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.74
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.64
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.63
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.63
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.6
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.58
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.58
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.55
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.55
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	96.54
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.51
COG3315	297	O-Methyltransferase involved in polyketide biosynt	96.49
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.45
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.38
COG2520	341	Predicted methyltransferase [General function pred	96.37
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.33
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.33
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.31
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.25
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.24
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.23
COG1414	246	IclR Transcriptional regulator [Transcription]	96.04
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	95.99
PRK11569	274	transcriptional repressor IclR; Provisional	95.87
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	95.86
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	95.79
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	95.78
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.73
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	95.69
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	95.64
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	95.59
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	95.58
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.56
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	95.56
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	95.47
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	95.47
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.4
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	95.38
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	95.37
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.33
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.23
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.2
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	95.18
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.15
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.09
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	94.95
PHA00738	108	putative HTH transcription regulator	94.86
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	94.86
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	94.83
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.72
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	94.69
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.61
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	94.54
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	94.41
COG0742	187	N6-adenine-specific methylase [DNA replication, re	94.37
PRK03902	142	manganese transport transcriptional regulator; Pro	94.34
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	94.33
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	94.25
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	94.14
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	94.12
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.1
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	93.89
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.88
COG3355	126	Predicted transcriptional regulator [Transcription	93.75
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	93.71
KOG2730	263	consensus Methylase [General function prediction o	93.7
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	93.68
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.66
PRK11050	152	manganese transport regulator MntR; Provisional	93.64
COG1959	150	Predicted transcriptional regulator [Transcription	93.57
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.55
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.48
PRK11014	141	transcriptional repressor NsrR; Provisional	93.4
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	93.32
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	93.28
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	93.21
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	93.14
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	93.1
COG4742	260	Predicted transcriptional regulator [Transcription	93.01
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	92.99
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	92.9
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	92.88
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	92.84
PRK06266	178	transcription initiation factor E subunit alpha; V	92.7
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	92.69
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	92.63
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	92.54
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	92.53
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	92.51
COG2345	218	Predicted transcriptional regulator [Transcription	92.43
PRK10742	250	putative methyltransferase; Provisional	92.41
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	92.33
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	92.32
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	92.31
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	92.24
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	92.2
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	92.09
COG2265	432	TrmA SAM-dependent methyltransferases related to t	91.82
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	91.68
COG4190	144	Predicted transcriptional regulator [Transcription	91.59
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	91.55
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	91.51
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.43
KOG3924	419	consensus Putative protein methyltransferase invol	91.42
PRK03573	144	transcriptional regulator SlyA; Provisional	91.36
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.34
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.25
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	91.21
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	91.2
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.95
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	90.94
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.91
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	90.81
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	90.4
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	90.18
PRK06474	178	hypothetical protein; Provisional	89.3
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	89.25
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	89.22
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	89.2
COG3432	95	Predicted transcriptional regulator [Transcription	89.01
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	88.89
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	88.86
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	88.67
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	88.46
PRK15431	78	ferrous iron transport protein FeoC; Provisional	88.33
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	88.26
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	88.18
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.59
COG5631	199	Predicted transcription regulator, contains HTH do	87.21
PRK14165	217	winged helix-turn-helix domain-containing protein/	87.16
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	86.37
PRK10870	176	transcriptional repressor MprA; Provisional	86.25
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	85.96
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	85.87
PF00392	64	GntR: Bacterial regulatory proteins, gntR family;	85.76
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	85.4
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	85.35
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.25
COG4189	308	Predicted transcriptional regulator [Transcription	85.23
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	85.12
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	85.07
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	85.04
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	84.86
COG1255	129	Uncharacterized protein conserved in archaea [Func	84.82
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	84.57
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	84.5
COG3413	215	Predicted DNA binding protein [General function pr	84.0
COG1568	354	Predicted methyltransferases [General function pre	83.74
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	83.59
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	83.55
PF12793	115	SgrR_N: Sugar transport-related sRNA regulator N-t	83.44
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	83.37
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	83.27
PHA02943	165	hypothetical protein; Provisional	83.25
COG1565	370	Uncharacterized conserved protein [Function unknow	81.9
PF04182	75	B-block_TFIIIC: B-block binding subunit of TFIIIC;	81.9
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	81.87
COG1846	126	MarR Transcriptional regulators [Transcription]	81.47
COG1510	177	Predicted transcriptional regulators [Transcriptio	81.22
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	80.96
PRK13777	185	transcriptional regulator Hpr; Provisional	80.65
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	80.64
PRK11169	164	leucine-responsive transcriptional regulator; Prov	80.3
PF13730	55	HTH_36: Helix-turn-helix domain	80.16
PRK13509	251	transcriptional repressor UlaR; Provisional	80.07
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	80.01

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=2.9e-42  Score=310.92  Aligned_cols=332  Identities=31%  Similarity=0.467  Sum_probs=284.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcC--CCCCCcchHHHHHHHHhccCceeeccccC
Q 043623           13 FQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE--FQPNKRNCLRRIMRLLDHSGFFSTTKVHN   90 (359)
Q Consensus        13 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~   90 (359)
                      .+...+++++++++...+++++|+|||+||+|.++ ++  ..|+|..+.  ..|.++..++|+||.|+++++++..-.  
T Consensus         4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~--   78 (342)
T KOG3178|consen    4 NEASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV--   78 (342)
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee--
Confidence            44567899999999999999999999999999974 22  888888877  344578899999999999999998852  


Q ss_pred             CCCCCCceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHH
Q 043623           91 SREEENEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL  169 (359)
Q Consensus        91 ~~~~~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (359)
                         ++. .|+++|.++++.++ .-.++++++.........+.|..+.++++ .++ .++...+|...++|...+......
T Consensus        79 ---~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~-eg~-~~~~~~~G~~l~~~~~~~~~~~~~  152 (342)
T KOG3178|consen   79 ---GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAIL-EGG-DAFATAHGMMLGGYGGADERFSKD  152 (342)
T ss_pred             ---cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHH-hcc-cCCccccchhhhhhcccccccHHH
Confidence               112 79999999865533 33588888888878888999999999999 777 678888998889998888888889


Q ss_pred             HHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCceEEeCCCC
Q 043623          170 FNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPET-DNLKFIAGDMN  247 (359)
Q Consensus       170 f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~-~rv~~~~~d~~  247 (359)
                      |++.|....... +.+++.+. +++.....||||+|.|..+..++..||+++++.+|+|.+++.+... +.|+.+.+|++
T Consensus       153 ~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmf  231 (342)
T KOG3178|consen  153 FNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF  231 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccc
Confidence            999998888777 77777766 4778899999999999999999999999999999999999998875 88999999999


Q ss_pred             CCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchH-HHHHHHhhhhhhhhc-CCcc
Q 043623          248 QSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI-TEAKLLYDALMMTCV-PGIE  325 (359)
Q Consensus       248 ~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~  325 (359)
                      ++.|..|+||+.++||||+|++++++|+|+++.|+|   ||+|+|.|.+.++....... ......+|+.|+..+ +|++
T Consensus       232 q~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke  308 (342)
T KOG3178|consen  232 QDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE  308 (342)
T ss_pred             ccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee
Confidence            999999999999999999999999999999999999   99999999988863222111 122345788888775 6999


Q ss_pred             cCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          326 RSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       326 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      |+.+|++.++.++||.+.++...+..+++|+++|
T Consensus       309 rt~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k  342 (342)
T KOG3178|consen  309 RTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK  342 (342)
T ss_pred             ccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence            9999999999999999999999999999999986

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=2.8e-38  Score=293.32  Aligned_cols=286  Identities=21%  Similarity=0.314  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchh
Q 043623           28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKL  107 (359)
Q Consensus        28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~  107 (359)
                      ..++|++|++|||||.|.+  +|.|++|||+++|+   +++.+++||++|+++|+|++++         +.|++|+.++.
T Consensus         3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~~---------~~y~~t~~~~~   68 (306)
T TIGR02716         3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED---------GKWSLTEFADY   68 (306)
T ss_pred             hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEecC---------CcEecchhHHh
Confidence            4689999999999999986  89999999999999   6799999999999999999874         78999999884


Q ss_pred             hh-cCCCC---ChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-H
Q 043623          108 LL-KDKPY---CLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-K  182 (359)
Q Consensus       108 l~-~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~  182 (359)
                      +. .+++.   ++.++..+... .....|..|.++++ ++.  +|...++     +....++....+...+....... +
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r-~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  139 (306)
T TIGR02716        69 MFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVR-GQK--NFKGQVP-----YPPVTREDNLYFEEIHRSNAKFAIQ  139 (306)
T ss_pred             hccCCccchhhhcCchHHHHHH-HHHHHHHhHHHHhc-CCc--ccccccC-----CCCCCHHHHHhHHHHHHhcchhHHH
Confidence            44 44432   11233333211 12356889999998 432  2332221     11112222223333333333334 5


Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCCCcc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIPSAD  254 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D  254 (359)
                      .+++..+  +++..+|||||||+|.+++.+++++|+++++++|+|.+++.+++       .+||+++.+|+++ ++|++|
T Consensus       140 ~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D  217 (306)
T TIGR02716       140 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD  217 (306)
T ss_pred             HHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence            6667666  77889999999999999999999999999999999888876643       5789999999997 777899


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh----hhhhhcCCcccCHHH
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA----LMMTCVPGIERSEKE  330 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~t~~e  330 (359)
                      +|++++++|+|+++.+.++|++++++|+|   ||+++|.|...++..... +   ....+.    .+.... ...++.++
T Consensus       218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~e  289 (306)
T TIGR02716       218 AVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-F---DYLSHYILGAGMPFSV-LGFKEQAR  289 (306)
T ss_pred             EEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-h---hHHHHHHHHccccccc-ccCCCHHH
Confidence            99999999999999889999999999999   999999999877654221 1   111211    111111 12345899


Q ss_pred             HHHHHHhcCCceeeEE
Q 043623          331 WERLFFDAGFTSYKIT  346 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~  346 (359)
                      |.++|+++||+.++++
T Consensus       290 ~~~ll~~aGf~~v~~~  305 (306)
T TIGR02716       290 YKEILESLGYKDVTMV  305 (306)
T ss_pred             HHHHHHHcCCCeeEec
Confidence            9999999999988764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=1.2e-38  Score=286.05  Aligned_cols=234  Identities=31%  Similarity=0.648  Sum_probs=200.2

Q ss_pred             CceEecCccchhhhcCCC-CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623           96 NEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL  174 (359)
Q Consensus        96 ~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~  174 (359)
                      ++.|++|+.|+.|..+++ .++..++.++..+.++..|.+|.++++ +|+ ++++..+|.++|+|+.++++....|+.+|
T Consensus         3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~-~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m   80 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVR-TGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAM   80 (241)
T ss_dssp             TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHH-HSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhc-cCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence            579999999997775554 578888877656678899999999999 787 78888889899999999999999999999


Q ss_pred             hcCccch--HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCCCC
Q 043623          175 ASDSQMA--KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPS  252 (359)
Q Consensus       175 ~~~~~~~--~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~~~  252 (359)
                      ...+...  ..+...++  +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~  158 (241)
T PF00891_consen   81 AEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV  158 (241)
T ss_dssp             HHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred             Hhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence            9876655  45566677  7888999999999999999999999999999999999999988899999999999998888


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCC--ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR--EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                      +|+|+++++||+|+|+++.+||++++++|+|   |  |+|+|+|.+.++....+........+|++|+..++|+.||.+|
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e  235 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE  235 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence            9999999999999999999999999999999   8  9999999999998877533222357999999999999999999


Q ss_pred             HHHHHH
Q 043623          331 WERLFF  336 (359)
Q Consensus       331 ~~~ll~  336 (359)
                      |++||+
T Consensus       236 ~~~ll~  241 (241)
T PF00891_consen  236 WEALLK  241 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.82  E-value=5.4e-19  Score=155.14  Aligned_cols=168  Identities=17%  Similarity=0.280  Sum_probs=128.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPS-  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~-  252 (359)
                      +.++....  ..++.+|||||||||.++..+++..+..+++++|+ +.|++.+++      ...|+|+.+|+++ |+|+ 
T Consensus        41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~  118 (238)
T COG2226          41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN  118 (238)
T ss_pred             HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence            44555444  34789999999999999999999999999999999 889988875      2239999999999 9985 


Q ss_pred             -ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh-hhhhcC--------
Q 043623          253 -ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL-MMTCVP--------  322 (359)
Q Consensus       253 -~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------  322 (359)
                       ||+|.+++.|++.+|.+  ++|++++|+|||   ||+++++|...+........   ...+.+. .+...|        
T Consensus       119 sFD~vt~~fglrnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g~~~~~~~~  190 (238)
T COG2226         119 SFDAVTISFGLRNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIGKLVAKDAE  190 (238)
T ss_pred             ccCEEEeeehhhcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhceeeecChH
Confidence             99999999999999865  779999999999   99999999998876543211   1111111 111111        


Q ss_pred             ---------CcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          323 ---------GIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       323 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                               -+..+.+++.++++++||+.+....+. |...+..++|
T Consensus       191 ~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K  237 (238)
T COG2226         191 AYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK  237 (238)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence                     134589999999999999988866664 4445555543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.79  E-value=1e-19  Score=161.29  Aligned_cols=157  Identities=19%  Similarity=0.339  Sum_probs=82.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCC--ccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPS--ADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~--~D~i~~~~  260 (359)
                      ..++.+|||+|||||.++..++++. |+.+++++|+ +.|++.+++      ..+|+++.+|+.+ |+++  ||+|++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            5667899999999999999999875 6789999999 889988764      3589999999999 8774  99999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh---hhcC----C----------
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM---TCVP----G----------  323 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----g----------  323 (359)
                      .||+++|..  +.|++++|+|||   ||+++|+|...++....      ...+.+++.   ...|    +          
T Consensus       125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~~------~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~  193 (233)
T PF01209_consen  125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPLL------RALYKFYFKYILPLIGRLLSGDREAYRYLPE  193 (233)
T ss_dssp             -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHHH------HHHHHH-------------------------
T ss_pred             hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCchh------hceeeeeeccccccccccccccccccccccc
Confidence            999999864  679999999999   99999999988775311      111211111   0001    1          


Q ss_pred             ---cccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          324 ---IERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       324 ---~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                         ...+.+++.++++++||+.++..++. |...++.++|
T Consensus       194 Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  194 SIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             ----------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccCC
Confidence               23478999999999999999988874 5566766655

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.78  E-value=1.7e-17  Score=150.15  Aligned_cols=160  Identities=20%  Similarity=0.251  Sum_probs=120.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CCC--CccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SIP--SADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~~--~~D~i~  257 (359)
                      ..++.+|||||||+|.++..+++.. |+.+++++|+ ++|++.+++         .++++++.+|+.+ |++  .||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            4567899999999999999999875 6789999999 788887643         3479999999988 776  399999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh---hhhcC------------
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM---MTCVP------------  322 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------  322 (359)
                      ++.++|++++.  .++|++++++|||   ||++++.|...++.....+.  ...++...+   ....+            
T Consensus       151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~  223 (261)
T PLN02233        151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI  223 (261)
T ss_pred             EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence            99999999875  4789999999999   99999999986654221110  001111000   00001            


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEE
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVY  358 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~  358 (359)
                      ...++.+++.++++++||+.++..... +...++.++
T Consensus       224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence            235699999999999999999988875 455666654

>TIGR00740 methyltransferase, putative

Probab=99.77  E-value=1.8e-18  Score=154.95  Aligned_cols=158  Identities=12%  Similarity=0.100  Sum_probs=120.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~v  261 (359)
                      .+..+|||||||+|.++..+++.+  |+++++++|+ +++++.+++       ..+++++.+|+.+ +.+.+|+|++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            466799999999999999999874  7899999999 888877753       3578999999998 7778999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh-----------------h-cCC
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT-----------------C-VPG  323 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~g  323 (359)
                      +|++++++..++|++++++|+|   ||.+++.|.+..+.....+     ....++...                 . .--
T Consensus       132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  203 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM  203 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence            9999988888999999999999   9999999987655433211     111111100                 0 012


Q ss_pred             cccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623          324 IERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY  358 (359)
Q Consensus       324 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~  358 (359)
                      ...+.+++.++++++||+.+++.........+.++
T Consensus       204 ~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       204 RTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             CCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence            35699999999999999988765554444444443

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.76  E-value=2.9e-17  Score=148.88  Aligned_cols=155  Identities=14%  Similarity=0.219  Sum_probs=120.2

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~  253 (359)
                      ..++..+.  +.++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++    .+++.++.+|+.+ +++  .|
T Consensus        42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F  118 (263)
T PTZ00098         42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF  118 (263)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence            45666666  7788999999999999999998765 679999999 777776653    4689999999987 665  49


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..+++|++.++..++|++++++|||   ||++++.+..........   .  ....  ..........+.+++.+
T Consensus       119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~  188 (263)
T PTZ00098        119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYGD  188 (263)
T ss_pred             EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHHH
Confidence            999999999888866678999999999999   999999998765432211   1  0111  01111234468999999


Q ss_pred             HHHhcCCceeeEEecC
Q 043623          334 LFFDAGFTSYKITPLL  349 (359)
Q Consensus       334 ll~~aGf~~~~~~~~~  349 (359)
                      +|+++||++++...+.
T Consensus       189 ~l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        189 LIKSCNFQNVVAKDIS  204 (263)
T ss_pred             HHHHCCCCeeeEEeCc
Confidence            9999999999988764

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.75  E-value=4.9e-17  Score=144.91  Aligned_cols=168  Identities=15%  Similarity=0.232  Sum_probs=124.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-  251 (359)
                      ..++..++  ..++.+|||+|||+|.++..+++.. |+.+++++|+ +++++.+++      .++++++.+|+.+ +++ 
T Consensus        35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  112 (231)
T TIGR02752        35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD  112 (231)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence            34555555  6677899999999999999999885 6789999999 778766553      4579999999987 555 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHH-Hhhhhh------------
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKL-LYDALM------------  317 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~------------  317 (359)
                       .||+|++..++|+.++.  .++|+++.+.|+|   ||++++.+...+....   ...... ++...+            
T Consensus       113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~  184 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYK  184 (231)
T ss_pred             CCccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHH
Confidence             49999999999998875  4789999999999   9999998876543311   100000 000000            


Q ss_pred             ----hhhcCCcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          318 ----MTCVPGIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       318 ----~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                          +.......++.+++.++|+++||+++++.... |..++++++|
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       185 EYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence                00011234588999999999999999999886 7788888887

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.75  E-value=7.6e-18  Score=151.50  Aligned_cols=152  Identities=13%  Similarity=0.152  Sum_probs=115.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA--FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~  260 (359)
                      ..+..+|||||||+|..+..+++.  +|+.+++++|. +++++.+++       ..+++++.+|+.+ +.+.+|+|+++.
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~  133 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  133 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence            356789999999999999999884  68999999999 889888764       3489999999988 777799999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh------------hh-hhcC-Cccc
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL------------MM-TCVP-GIER  326 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~-g~~~  326 (359)
                      ++|++++++...++++++++|+|   ||.+++.|.+..+.....+. .........            +. ...+ -...
T Consensus       134 ~l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~  209 (247)
T PRK15451        134 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD  209 (247)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence            99999987778999999999999   99999999776554433211 000011100            00 0001 1234


Q ss_pred             CHHHHHHHHHhcCCceeeEEe
Q 043623          327 SEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~  347 (359)
                      +.++..++|+++||+.++++-
T Consensus       210 ~~~~~~~~L~~aGF~~v~~~~  230 (247)
T PRK15451        210 SVETHKARLHKAGFEHSELWF  230 (247)
T ss_pred             CHHHHHHHHHHcCchhHHHHH
Confidence            899999999999999877654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.71  E-value=3e-16  Score=141.98  Aligned_cols=152  Identities=16%  Similarity=0.248  Sum_probs=111.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-C-CCCccEEEe
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-S-IPSADAFLF  258 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~-~~~~D~i~~  258 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|++
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~   95 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS   95 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence            55666665  56779999999999999999999999999999999 889888875 468999999876 2 235999999


Q ss_pred             cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH-----hhhhhh---hhcCCcccCHHH
Q 043623          259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL-----YDALMM---TCVPGIERSEKE  330 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~g~~~t~~e  330 (359)
                      +.++|++++.  .+++++++++|+|   ||++++..+....  ... .......     +...+.   ...+....+.++
T Consensus        96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~--~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  167 (255)
T PRK14103         96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFD--APS-HAAVRALARREPWAKLLRDIPFRVGAVVQTPAG  167 (255)
T ss_pred             ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcC--Chh-HHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence            9999999875  4789999999999   9999886432111  110 0000000     000000   011234568999


Q ss_pred             HHHHHHhcCCceee
Q 043623          331 WERLFFDAGFTSYK  344 (359)
Q Consensus       331 ~~~ll~~aGf~~~~  344 (359)
                      +.++|+++||++..
T Consensus       168 ~~~~l~~aGf~v~~  181 (255)
T PRK14103        168 YAELLTDAGCKVDA  181 (255)
T ss_pred             HHHHHHhCCCeEEE
Confidence            99999999998543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.71  E-value=2.6e-16  Score=135.76  Aligned_cols=144  Identities=19%  Similarity=0.276  Sum_probs=111.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CCCC--c
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPS------IKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SIPS--A  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~~~--~  253 (359)
                      ....++|||+||||..+..+++.-+.      .+++++|+ |++++.+++         ..++.|+++|.++ |+|+  |
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            45689999999999999999998776      78999999 888876543         4569999999999 9885  9


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC-----------
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP-----------  322 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  322 (359)
                      |+|.+.+-+.++++.+  +.|++++|+|||   ||++.+.|+...++....   .....+.+..+...|           
T Consensus       179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~---~fy~~ysf~VlpvlG~~iagd~~sYq  250 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLK---WFYDQYSFDVLPVLGEIIAGDRKSYQ  250 (296)
T ss_pred             eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHH---HHHHhhhhhhhchhhHhhhhhHhhhh
Confidence            9999999999999964  779999999999   999999998765532211   111111111111111           


Q ss_pred             ------CcccCHHHHHHHHHhcCCceee
Q 043623          323 ------GIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       323 ------g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                            -+..+.+++..+.++|||+.+.
T Consensus       251 YLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  251 YLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence                  2345899999999999999886

>PLN02244 tocopherol O-methyltransferase

Probab=99.71  E-value=4.7e-16  Score=146.09  Aligned_cols=151  Identities=17%  Similarity=0.205  Sum_probs=111.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      .++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++       .++|+++.+|+.+ +++  .||+|++..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            567899999999999999999987 679999999 777766543       4689999999988 665  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCc-hH-HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP-EI-TEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      +||++|.  .+++++++++|||   ||+++|.+.......... .. ......++............+.++|.++++++|
T Consensus       196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG  270 (340)
T PLN02244        196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG  270 (340)
T ss_pred             hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence            9999875  4789999999999   999999887643322110 00 011111111111111112348999999999999


Q ss_pred             CceeeEEecC
Q 043623          340 FTSYKITPLL  349 (359)
Q Consensus       340 f~~~~~~~~~  349 (359)
                      |..+++..+.
T Consensus       271 f~~v~~~d~s  280 (340)
T PLN02244        271 LQDIKTEDWS  280 (340)
T ss_pred             CCeeEeeeCc
Confidence            9999987764

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.68  E-value=4e-15  Score=133.03  Aligned_cols=167  Identities=19%  Similarity=0.232  Sum_probs=122.1

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      .++..+.  ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++       ..++.++.+|+.+ +.+ 
T Consensus        42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence            4444444  34568999999999999999999987 789999999 666665543       3578999999987 443 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh-----hcC---
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT-----CVP---  322 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---  322 (359)
                       .||+|++.+++|++++.  ..+|+++.+.|+|   ||.+++++...+......   .....+...++.     ..+   
T Consensus       120 ~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  191 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAE  191 (239)
T ss_pred             CCccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcH
Confidence             49999999999998875  4779999999999   999999988765432110   100011000000     001   


Q ss_pred             ---------CcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          323 ---------GIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       323 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                               ...++.++|.++|+++||+.+++.... +...++.++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence                     124578999999999999999999874 6678888876

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.67  E-value=1.2e-15  Score=141.72  Aligned_cols=141  Identities=23%  Similarity=0.320  Sum_probs=111.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccEEEecchhccC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDY  265 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~  265 (359)
                      .+..+|||||||+|.++..+++..+..+++++|. +++++.+++   ..+++++.+|+.+ +++  .||+|+++.++|++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            3567999999999999999999888889999999 778777654   4678999999987 655  49999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~  345 (359)
                      ++.+  ++|++++++|+|   ||++++.+...++...      .....+.++      ...+.+++.++|+++||+.+++
T Consensus       192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~------~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWL------SRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchhH------HHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence            9865  679999999999   9999988765433111      111112221      1248999999999999999999


Q ss_pred             EecCC
Q 043623          346 TPLLG  350 (359)
Q Consensus       346 ~~~~~  350 (359)
                      ..+..
T Consensus       255 ~~i~~  259 (340)
T PLN02490        255 KRIGP  259 (340)
T ss_pred             EEcCh
Confidence            87643

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.67  E-value=4.2e-15  Score=131.47  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=122.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--S  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~  252 (359)
                      ..++..+.  ..++.+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++    ..+++++.+|+.+ +.+  .
T Consensus        29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  106 (223)
T TIGR01934        29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS  106 (223)
T ss_pred             HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence            34444444  446789999999999999999999987 79999999 667665543    4579999999987 544  4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC----------
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP----------  322 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  322 (359)
                      ||+|+++.++|+.++.  ..+++++++.|+|   ||++++.+...+......   .....+...++...+          
T Consensus       107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  178 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAY  178 (223)
T ss_pred             EEEEEEeeeeCCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhh
Confidence            9999999999998874  4789999999999   999999888654332110   000011111111000          


Q ss_pred             -------CcccCHHHHHHHHHhcCCceeeEEecCCc-ceEEEEEC
Q 043623          323 -------GIERSEKEWERLFFDAGFTSYKITPLLGL-RSFIEVYL  359 (359)
Q Consensus       323 -------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~~  359 (359)
                             ....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       179 TYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence                   12347899999999999999999998654 66777775

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.65  E-value=2.8e-15  Score=147.57  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=117.5

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--Cc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SA  253 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~  253 (359)
                      .+++.+.  ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++     ..+++|+.+|+.+ +++  .|
T Consensus       257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            4566555  5667899999999999999998876 679999999 777776643     4579999999988 655  39


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..+++|+++..  ++|++++++|+|   ||++++.+..........   .....     ....+...++.+++.+
T Consensus       334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~-----~~~~g~~~~~~~~~~~  400 (475)
T PLN02336        334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY-----IKQRGYDLHDVQAYGQ  400 (475)
T ss_pred             EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH-----HHhcCCCCCCHHHHHH
Confidence            9999999999998764  789999999999   999999998765433221   11111     1123456779999999


Q ss_pred             HHHhcCCceeeEEecC
Q 043623          334 LFFDAGFTSYKITPLL  349 (359)
Q Consensus       334 ll~~aGf~~~~~~~~~  349 (359)
                      +++++||+++++....
T Consensus       401 ~l~~aGF~~i~~~d~~  416 (475)
T PLN02336        401 MLKDAGFDDVIAEDRT  416 (475)
T ss_pred             HHHHCCCeeeeeecch
Confidence            9999999998776543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.64  E-value=4.1e-15  Score=126.74  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=127.9

Q ss_pred             cCCCC-eEEEEcCCchHHHHHHHHHCCCCeEEEeechH-HHhcCC----C--CCCc-eEEeCCCCCC---CC--------
Q 043623          192 FDGLS-SLVEVGGGTGSFARIISEAFPSIKCSVLELPH-VIADLP----E--TDNL-KFIAGDMNQS---IP--------  251 (359)
Q Consensus       192 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~i~~a~----~--~~rv-~~~~~d~~~~---~~--------  251 (359)
                      ++... +|||||+|||..+..+++++|++...--|.+. ......    +  .+++ .-+..|+.++   ++        
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~  101 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE  101 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence            44445 49999999999999999999999998888732 222211    1  2333 2355666652   22        


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-cCCcccCHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-VPGIERSEKE  330 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~~e  330 (359)
                      .||+|++.+++|..+.+.+..+++.+.++|+|   ||.++++-++..+....+   +....||..+... .....|+.++
T Consensus       102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~  175 (204)
T PF06080_consen  102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED  175 (204)
T ss_pred             CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence            49999999999999999999999999999999   999999999988775543   3445678777655 3567789999


Q ss_pred             HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          331 WERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +.++.+++||+..+++.+|.++.+++.+|
T Consensus       176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  176 VEALAAAHGLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence            99999999999999999998888888775

The function of this family is unknown.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.63  E-value=4.3e-15  Score=138.21  Aligned_cols=153  Identities=11%  Similarity=0.127  Sum_probs=109.2

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCC-CCC-C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQ-SIP-S  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~-~~~-~  252 (359)
                      .+...++  ...+.+|||||||+|.++..+++..+. +++++|. +.++..++       ...+|+++.+|+.+ +.+ .
T Consensus       113 ~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~  189 (322)
T PRK15068        113 RVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA  189 (322)
T ss_pred             HHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence            3344443  234689999999999999999998776 6999998 54443221       14589999999987 654 4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++..++||..+.  ..+|+++++.|+|   ||.+++.....+........+. ..+..  +.  .....++.+++.
T Consensus       190 FD~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~l~p~-~~y~~--~~--~~~~lps~~~l~  259 (322)
T PRK15068        190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTVLVPG-DRYAK--MR--NVYFIPSVPALK  259 (322)
T ss_pred             cCEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccccCch-hHHhc--Cc--cceeCCCHHHHH
Confidence            9999999999998875  4789999999999   9999887665554332210000 11111  00  011245899999


Q ss_pred             HHHHhcCCceeeEEec
Q 043623          333 RLFFDAGFTSYKITPL  348 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~  348 (359)
                      ++|+++||+.+++...
T Consensus       260 ~~L~~aGF~~i~~~~~  275 (322)
T PRK15068        260 NWLERAGFKDVRIVDV  275 (322)
T ss_pred             HHHHHcCCceEEEEeC
Confidence            9999999999998765

>TIGR00452 methyltransferase, putative

Probab=99.63  E-value=4.7e-15  Score=136.62  Aligned_cols=153  Identities=10%  Similarity=0.120  Sum_probs=108.5

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CCCCCceEEeCCCCC-CC-CC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL-------PETDNLKFIAGDMNQ-SI-PS  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a-------~~~~rv~~~~~d~~~-~~-~~  252 (359)
                      .++..+.  ..++.+|||||||+|.++..++...+. +++++|. +.++..+       ....++.+..+++.+ +. ..
T Consensus       112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~  188 (314)
T TIGR00452       112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA  188 (314)
T ss_pred             HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence            3454443  345689999999999999999988765 7999998 5555432       124678888888876 43 35


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++..+|||+++.  ..+|++++++|+|   ||.+++.....+......-.+. .. +. .|.  .....++.+++.
T Consensus       189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~l~p~-~r-y~-k~~--nv~flpS~~~L~  258 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTVLVPK-DR-YA-KMK--NVYFIPSVSALK  258 (314)
T ss_pred             cCEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccccCch-HH-HH-hcc--ccccCCCHHHHH
Confidence            9999999999999876  4679999999999   9999988776544322110000 00 10 000  001235899999


Q ss_pred             HHHHhcCCceeeEEec
Q 043623          333 RLFFDAGFTSYKITPL  348 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~  348 (359)
                      .+|+++||+.+++...
T Consensus       259 ~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       259 NWLEKVGFENFRILDV  274 (314)
T ss_pred             HHHHHCCCeEEEEEec
Confidence            9999999999998765

Known examples to date are restricted to the proteobacteria.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.63  E-value=6.3e-15  Score=127.97  Aligned_cols=140  Identities=17%  Similarity=0.214  Sum_probs=107.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-S  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~  252 (359)
                      +.+++.++  ..++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++      ..+++++..|+.+ +++ .
T Consensus        20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (197)
T PRK11207         20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE   95 (197)
T ss_pred             HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence            56666665  556689999999999999999986  568999999 778876653      3458889999887 444 4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++..++|++++++...++++++++|+|   ||.+++++....+....+        ..       ....++.+|+.
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~el~  157 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------VG-------FPFAFKEGELR  157 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------CC-------CCCccCHHHHH
Confidence            9999999999999888888999999999999   999877665544321110        00       01224788999


Q ss_pred             HHHHhcCCceeeE
Q 043623          333 RLFFDAGFTSYKI  345 (359)
Q Consensus       333 ~ll~~aGf~~~~~  345 (359)
                      ++++  ||+++..
T Consensus       158 ~~~~--~~~~~~~  168 (197)
T PRK11207        158 RYYE--GWEMVKY  168 (197)
T ss_pred             HHhC--CCeEEEe
Confidence            9997  8988776

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.63  E-value=3e-15  Score=132.80  Aligned_cols=136  Identities=15%  Similarity=0.231  Sum_probs=107.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecchhccC
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDY  265 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~  265 (359)
                      ++|||||||+|.++..+++.+|+.+++++|+ +++++.+++       .++++++.+|+.+ +.+ .||+|++..++|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            4799999999999999999999999999999 667665543       5689999999976 555 49999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~  345 (359)
                      ++.  ..+|+++++.|+|   ||++++.+.......... . .           .......+..+|.++++++||++++.
T Consensus        81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~-~-~-----------~~~~~~~s~~~~~~~l~~~Gf~~~~~  142 (224)
T smart00828       81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE-H-E-----------ETTSYLVTREEWAELLARNNLRVVEG  142 (224)
T ss_pred             CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc-c-c-----------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence            874  5789999999999   999999987543211110 0 0           00111358999999999999999998


Q ss_pred             EecC
Q 043623          346 TPLL  349 (359)
Q Consensus       346 ~~~~  349 (359)
                      ..+.
T Consensus       143 ~~~~  146 (224)
T smart00828      143 VDAS  146 (224)
T ss_pred             EECc
Confidence            8764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.62  E-value=2.1e-15  Score=118.59  Aligned_cols=98  Identities=17%  Similarity=0.331  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCC-CC-CC-CCccEEEecc-h
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDM-NQ-SI-PSADAFLFKL-I  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~-~~-~~-~~~D~i~~~~-v  261 (359)
                      ++.+|||||||+|.++..+++.+|+.+++++|. |++++.+++       .+||+++.+|+ .. .. +.||+|++.. +
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            467999999999999999999999999999999 788776653       78999999999 33 33 3599999999 6


Q ss_pred             hccCC-hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          262 FHDYD-DEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +|++. .++..++|+++++.|+|   ||+++|.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence            66554 35678899999999999   89888865

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.62  E-value=2.3e-15  Score=139.26  Aligned_cols=143  Identities=8%  Similarity=0.092  Sum_probs=106.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      ++.+|||||||+|.++..+++  ++.+++++|. +++++.++.       ..+|+++.+|+.+ +.+  .||+|++..+|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            456999999999999998886  4679999999 788877653       2479999999877 443  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh--hhc----CCcccCHHHHHHHHH
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM--TCV----PGIERSEKEWERLFF  336 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~g~~~t~~e~~~ll~  336 (359)
                      ||++|..  .+|+++++.|||   ||.++|.........    + .........+.  ...    ..+.++++++.++|+
T Consensus       209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~-~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~  278 (322)
T PLN02396        209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----Y-ASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQ  278 (322)
T ss_pred             HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----H-HHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHH
Confidence            9999864  789999999999   999998876432110    0 00000000011  011    134679999999999


Q ss_pred             hcCCceeeEEec
Q 043623          337 DAGFTSYKITPL  348 (359)
Q Consensus       337 ~aGf~~~~~~~~  348 (359)
                      ++||+++++..+
T Consensus       279 ~aGf~i~~~~G~  290 (322)
T PLN02396        279 RASVDVKEMAGF  290 (322)
T ss_pred             HcCCeEEEEeee
Confidence            999999998655

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.61  E-value=1.2e-14  Score=132.82  Aligned_cols=146  Identities=18%  Similarity=0.306  Sum_probs=112.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~  260 (359)
                      +.++.+|||||||+|..+..+++. .++.+++++|. +.+++.+++      .++++++.+|+.+ +++  .||+|++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            567889999999999988877776 46678999999 788887764      3689999999987 655  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      ++|++++.  .++|++++++|+|   ||++++.+.........      ....+..+.....+...+.++|.++|+++||
T Consensus       155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf  223 (272)
T PRK11873        155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGF  223 (272)
T ss_pred             cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence            99988775  4689999999999   99999998875442211      1112222332233455689999999999999


Q ss_pred             ceeeEEec
Q 043623          341 TSYKITPL  348 (359)
Q Consensus       341 ~~~~~~~~  348 (359)
                      ..+++...
T Consensus       224 ~~v~i~~~  231 (272)
T PRK11873        224 VDITIQPK  231 (272)
T ss_pred             CceEEEec
Confidence            99877543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.61  E-value=9.1e-15  Score=122.44  Aligned_cols=135  Identities=19%  Similarity=0.204  Sum_probs=97.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCCCccEEEecchhccCCh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIPSADAFLFKLIFHDYDD  267 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~~~D~i~~~~vlh~~~d  267 (359)
                      ..+..+|||||||+|.++..+.+...  +++++|. +.+++.    .++.....+...   +...||+|+++++|||+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d   93 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD   93 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence            45678999999999999999977644  9999999 677766    233333332223   2235999999999999997


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh--cCCcccCHHHHHHHHHhcCCceee
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC--VPGIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                      .  .++|+++++.|||   ||.+++.++......       ........+...  .....++.++|.++++++||++++
T Consensus        94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPS-------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHH-------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             H--HHHHHHHHHhcCC---CCEEEEEEcCCcchh-------hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            4  5889999999999   999999988764310       111111111111  334677999999999999999875

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=1.2e-14  Score=129.92  Aligned_cols=156  Identities=17%  Similarity=0.180  Sum_probs=127.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~  253 (359)
                      ..+++++.  +.++.+|||||||-|.+++..++++ +.+++++++ +++.+.+++       .++|++...|..+..+.|
T Consensus        62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f  138 (283)
T COG2230          62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF  138 (283)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence            56777777  8999999999999999999999999 899999999 666555443       578999999998844459


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |-|++...++|+..+.-..+|+++++.|+|   ||++++.....++..... .   ..+  +.-...+||..++..++.+
T Consensus       139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~-~---~~~--i~~yiFPgG~lPs~~~i~~  209 (283)
T COG2230         139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR-F---PDF--IDKYIFPGGELPSISEILE  209 (283)
T ss_pred             ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc-c---hHH--HHHhCCCCCcCCCHHHHHH
Confidence            999999999999998888999999999999   999999888777754311 0   001  1112247899999999999


Q ss_pred             HHHhcCCceeeEEecC
Q 043623          334 LFFDAGFTSYKITPLL  349 (359)
Q Consensus       334 ll~~aGf~~~~~~~~~  349 (359)
                      ..+++||.+.++..++
T Consensus       210 ~~~~~~~~v~~~~~~~  225 (283)
T COG2230         210 LASEAGFVVLDVESLR  225 (283)
T ss_pred             HHHhcCcEEehHhhhc
Confidence            9999999998887664

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.60  E-value=2.4e-15  Score=125.17  Aligned_cols=137  Identities=23%  Similarity=0.371  Sum_probs=101.0

Q ss_pred             CCCeEEEEcCCchHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIIS-EAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~~v  261 (359)
                      ...+|||+|||+|.++..++ +.+|+.+++++|+ +++++.++.      .++++|+.+|+.+ +  ++ .||+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            56899999999999999999 5578999999999 888887764      4589999999999 5  43 6999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-cCCcccCHHHHHHHHHhcC
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-VPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~~e~~~ll~~aG  339 (359)
                      +|++++..  .+|+++.+.|++   +|.+++.+......... ....... +....+.. ..+.  +.++|..+|++||
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag  152 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPE-QLEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG  152 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHH-HHHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred             hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHH-HHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence            99999864  779999999999   89999988872221110 0101001 11111111 1122  8899999999998

...

>PRK06922 hypothetical protein; Provisional

Probab=99.59  E-value=1e-14  Score=143.45  Aligned_cols=142  Identities=20%  Similarity=0.298  Sum_probs=110.5

Q ss_pred             CChhHhhhhChHHHHHHHHHhhcCccch---HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHH
Q 043623          154 INIWGYAEQNHEFNNLFNQGLASDSQMA---KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHV  229 (359)
Q Consensus       154 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~  229 (359)
                      ..+|+++..+++...+|...|.......   ......++  +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M  454 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV  454 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence            5679999888888888887665533222   11122233  44678999999999999999999999999999999 677


Q ss_pred             HhcCCC-----CCCceEEeCCCCC-C--CC--CccEEEecchhccC-----------ChhHHHHHHHHHHHhcCCCCCCc
Q 043623          230 IADLPE-----TDNLKFIAGDMNQ-S--IP--SADAFLFKLIFHDY-----------DDEVCLKLLKNCREAVASSDGRE  288 (359)
Q Consensus       230 i~~a~~-----~~rv~~~~~d~~~-~--~~--~~D~i~~~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~gG  288 (359)
                      ++.+++     ..++.++.+|+.+ +  ++  .||+|+++.++|++           ++++..++|++++++|||   ||
T Consensus       455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG  531 (677)
T PRK06922        455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG  531 (677)
T ss_pred             HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence            877653     3567888899876 3  43  49999999999976           345678999999999999   99


Q ss_pred             eEEEEeeecCCC
Q 043623          289 KVIIVDIVVNEK  300 (359)
Q Consensus       289 ~lli~e~~~~~~  300 (359)
                      +++|.|...++.
T Consensus       532 rLII~D~v~~E~  543 (677)
T PRK06922        532 RIIIRDGIMTED  543 (677)
T ss_pred             EEEEEeCccCCc
Confidence            999999766543

>PRK05785 hypothetical protein; Provisional

Probab=99.58  E-value=8.3e-14  Score=123.39  Aligned_cols=154  Identities=11%  Similarity=0.104  Sum_probs=108.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE  268 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~  268 (359)
                      .++.+|||||||||.++..+++.+ +.+++++|. ++|++.+++.  ..++.+|+.+ |++  .||+|++..+||+++|.
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~  126 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI  126 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence            346899999999999999999987 579999999 8899988753  3567888888 766  39999999999999886


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh--hhh-hcCC-------------cccCHHHHH
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL--MMT-CVPG-------------IERSEKEWE  332 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~g-------------~~~t~~e~~  332 (359)
                      +  +.|++++++|||   .  ++|++...++......  ....++...  .+. ..++             ...+.+++.
T Consensus       127 ~--~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~--~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~  197 (226)
T PRK05785        127 E--KVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRK--YLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR  197 (226)
T ss_pred             H--HHHHHHHHHhcC---c--eEEEEeCCCCcHHHHH--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence            4  679999999998   3  4456665444321100  000111110  011 1122             234889999


Q ss_pred             HHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          333 RLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                      ++++++| ..++...+. |...++.++|
T Consensus       198 ~~~~~~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        198 EIFEKYA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             HHHHHHh-CceEEEEccccEEEEEEEee
Confidence            9999984 767777774 5566777665

>PRK08317 hypothetical protein; Provisional

Probab=99.58  E-value=5.2e-14  Score=125.73  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=112.3

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--S  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~  252 (359)
                      .++..+.  +.++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++     ..+++++.+|+.. +++  .
T Consensus        10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   87 (241)
T PRK08317         10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS   87 (241)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence            3455555  6678899999999999999999988 7889999999 666665543     5678999999887 554  4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCc-hHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP-EITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      ||+|++.+++|++++.  ..+++++++.|+|   ||.+++.++......... ...........+.  .......+..+|
T Consensus        88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  160 (241)
T PRK08317         88 FDAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRL  160 (241)
T ss_pred             ceEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHH
Confidence            9999999999999885  4679999999999   999999886432211110 0001111111111  112233456789


Q ss_pred             HHHHHhcCCceeeEEec
Q 043623          332 ERLFFDAGFTSYKITPL  348 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~~  348 (359)
                      .++|+++||+.+++...
T Consensus       161 ~~~l~~aGf~~~~~~~~  177 (241)
T PRK08317        161 PGLFREAGLTDIEVEPY  177 (241)
T ss_pred             HHHHHHcCCCceeEEEE
Confidence            99999999998776443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.58  E-value=4.8e-14  Score=127.78  Aligned_cols=151  Identities=12%  Similarity=0.223  Sum_probs=109.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C-CCCccEEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S-IPSADAFL  257 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~-~~~~D~i~  257 (359)
                      ..++..++  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+ . ...||+|+
T Consensus        21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~   98 (258)
T PRK01683         21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF   98 (258)
T ss_pred             HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence            56677666  66788999999999999999999999999999999 788888765 5679999999876 2 23599999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH-----hhhhhhh--hcCCcccCHHH
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL-----YDALMMT--CVPGIERSEKE  330 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~g~~~t~~e  330 (359)
                      ++.++|+.++.  .++|++++++|+|   ||.+++.-   ++....+........     +...+..  .......+..+
T Consensus        99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  170 (258)
T PRK01683         99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA  170 (258)
T ss_pred             EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence            99999988875  4789999999999   89888752   221111100000000     0000000  01134467889


Q ss_pred             HHHHHHhcCCce
Q 043623          331 WERLFFDAGFTS  342 (359)
Q Consensus       331 ~~~ll~~aGf~~  342 (359)
                      +.+++.++|+.+
T Consensus       171 ~~~~l~~~g~~v  182 (258)
T PRK01683        171 YYDALAPAACRV  182 (258)
T ss_pred             HHHHHHhCCCce
Confidence            999999999874

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.58  E-value=2.2e-14  Score=130.04  Aligned_cols=160  Identities=13%  Similarity=0.116  Sum_probs=109.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~~~~~~  253 (359)
                      ..++++..  ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.++       ..++|++...|+.+-.+.|
T Consensus        52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f  128 (273)
T PF02353_consen   52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF  128 (273)
T ss_dssp             HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred             HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence            45677776  8899999999999999999999998 789999999 55554433       2678999999988732379


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |.|++..++.|++.+....+++++.+.|+|   ||++++......+............+  +.....+||..++..++..
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~--i~kyiFPgg~lps~~~~~~  203 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDF--IRKYIFPGGYLPSLSEILR  203 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHH--HHHHTSTTS---BHHHHHH
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceE--EEEeeCCCCCCCCHHHHHH
Confidence            999999999999888788999999999999   99998877766543211000000011  1122246888899999999


Q ss_pred             HHHhcCCceeeEEecC
Q 043623          334 LFFDAGFTSYKITPLL  349 (359)
Q Consensus       334 ll~~aGf~~~~~~~~~  349 (359)
                      .++++||++..+..++
T Consensus       204 ~~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  204 AAEDAGLEVEDVENLG  219 (273)
T ss_dssp             HHHHTT-EEEEEEE-H
T ss_pred             HHhcCCEEEEEEEEcC
Confidence            9999999999887764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.58  E-value=8.3e-15  Score=132.51  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CCC--CccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SIP--SADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~~--~~D~i~~~~  260 (359)
                      .++.+|||||||+|.++..+++.  +.+++++|+ +++++.+++       .++++++.+|+.+  +.+  .||+|++..
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence            35679999999999999999987  468999999 788887764       3678999999866  232  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-HHHHHhhhhhh-----hhcCCcccCHHHHHHH
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-EAKLLYDALMM-----TCVPGIERSEKEWERL  334 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~g~~~t~~e~~~l  334 (359)
                      +||+++++.  ++|+++.++|||   ||.++++.............. ... .....+.     ........+++++.++
T Consensus       121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~l~~~  194 (255)
T PRK11036        121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFD-YVQAGMPKRKKRTLSPDYPLDPEQVYQW  194 (255)
T ss_pred             HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChH-HHHhcCccccccCCCCCCCCCHHHHHHH
Confidence            999998764  789999999999   999988755432110000000 000 0000000     0011224588999999


Q ss_pred             HHhcCCceeeEEecCCc
Q 043623          335 FFDAGFTSYKITPLLGL  351 (359)
Q Consensus       335 l~~aGf~~~~~~~~~~~  351 (359)
                      |+++||+++.+..+.++
T Consensus       195 l~~aGf~~~~~~gi~~~  211 (255)
T PRK11036        195 LEEAGWQIMGKTGVRVF  211 (255)
T ss_pred             HHHCCCeEeeeeeEEEE
Confidence            99999999887765443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.55  E-value=8.9e-14  Score=120.55  Aligned_cols=141  Identities=15%  Similarity=0.139  Sum_probs=104.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~  253 (359)
                      ..+++.++  ..++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++     .-++.+...|+.. +.+ .|
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            45566555  445689999999999999999986  568999999 777776543     2246777788765 443 59


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|+++.++|+++++....++++++++|+|   ||++++++....+....++               ......+.+++.+
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~~---------------~~~~~~~~~el~~  157 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCHM---------------PFSFTFKEDELRQ  157 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCCC---------------CcCccCCHHHHHH
Confidence            999999999999887788999999999999   9998887765432211100               0011348899999


Q ss_pred             HHHhcCCceeeEE
Q 043623          334 LFFDAGFTSYKIT  346 (359)
Q Consensus       334 ll~~aGf~~~~~~  346 (359)
                      +|+  +|++....
T Consensus       158 ~f~--~~~~~~~~  168 (195)
T TIGR00477       158 YYA--DWELLKYN  168 (195)
T ss_pred             HhC--CCeEEEee
Confidence            996  47777665

Part of a tellurite-reducing operon tehA and tehB

>PRK06202 hypothetical protein; Provisional

Probab=99.55  E-value=6e-14  Score=125.14  Aligned_cols=147  Identities=15%  Similarity=0.161  Sum_probs=104.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      .++.+|||||||+|.++..+++.    .|+.+++++|+ +++++.+++   ..++++...+... +.+  .||+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            45689999999999999888763    46779999999 888887765   3557776665443 322  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-h---hc-C----CcccCHHHHH
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-T---CV-P----GIERSEKEWE  332 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~----g~~~t~~e~~  332 (359)
                      |||+++++..++|++++++++     |.+++.+...+...    +... ........ .   .. +    .+.++.+|+.
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~----~~~~-~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~  208 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLA----YALF-WAGTRLLSRSSFVHTDGLLSVRRSYTPAELA  208 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHH----HHHH-HHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence            999999887899999999985     56777776654211    0000 00000000 0   01 1    2457999999


Q ss_pred             HHHHhcCCceeeEEecCC
Q 043623          333 RLFFDAGFTSYKITPLLG  350 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~~~  350 (359)
                      +++++ ||++...+++..
T Consensus       209 ~ll~~-Gf~~~~~~~~~~  225 (232)
T PRK06202        209 ALAPQ-GWRVERQWPFRY  225 (232)
T ss_pred             HHhhC-CCeEEeccceee
Confidence            99999 999988877653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.55  E-value=8.1e-14  Score=123.18  Aligned_cols=144  Identities=12%  Similarity=0.132  Sum_probs=102.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~D~i~~~~vlh~  264 (359)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +++++.+++       .+++++..+|+.+....||+|++..++++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~  131 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH  131 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence            45789999999999999999886  458999999 788877654       25899999999873366999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh---cCCcccCHHHHHHHHHhcCCc
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC---VPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      ++++...++++++.+.+++   + .++...   +....   ...... ....+...   ..-..++.+++.++++++||+
T Consensus       132 ~~~~~~~~~l~~i~~~~~~---~-~~i~~~---~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  200 (219)
T TIGR02021       132 YPASDMAKALGHLASLTKE---R-VIFTFA---PKTAW---LAFLKM-IGELFPGSSRATSAYLHPMTDLERALGELGWK  200 (219)
T ss_pred             CCHHHHHHHHHHHHHHhCC---C-EEEEEC---CCchH---HHHHHH-HHhhCcCcccccceEEecHHHHHHHHHHcCce
Confidence            9877778899999998876   4 333321   11110   101101 11111000   112345899999999999999


Q ss_pred             eeeEEecC
Q 043623          342 SYKITPLL  349 (359)
Q Consensus       342 ~~~~~~~~  349 (359)
                      ++......
T Consensus       201 v~~~~~~~  208 (219)
T TIGR02021       201 IVREGLVS  208 (219)
T ss_pred             eeeeeccc
Confidence            99887664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.54  E-value=6.1e-14  Score=118.38  Aligned_cols=172  Identities=12%  Similarity=0.159  Sum_probs=127.8

Q ss_pred             CccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC--CCCC
Q 043623          177 DSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ--SIPS  252 (359)
Q Consensus       177 ~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~--~~~~  252 (359)
                      .++....++..++  .....+|+|+|||+|..+..|++++|...++|+|. ++|++.|+. ..+++|..+|+.+  |-++
T Consensus        15 RtRPa~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~   92 (257)
T COG4106          15 RTRPARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP   92 (257)
T ss_pred             ccCcHHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc
Confidence            3444478888888  88889999999999999999999999999999998 899998865 7899999999988  5556


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH-----hhhhhhh--hcCCcc
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL-----YDALMMT--CVPGIE  325 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~g~~  325 (359)
                      +|+++.+.+||-.+|.  .++|.++...|.|   ||.|.|.=+..-+   .+.+......     +.-.+..  ..+...
T Consensus        93 ~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmPdN~d---epsH~~mr~~A~~~p~~~~l~~~~~~r~~v  164 (257)
T COG4106          93 TDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMPDNLD---EPSHRLMRETADEAPFAQELGGRGLTRAPL  164 (257)
T ss_pred             cchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECCCccC---chhHHHHHHHHhcCchhhhhCccccccCCC
Confidence            9999999999988885  5889999999999   8888775433222   2211111111     1111111  123456


Q ss_pred             cCHHHHHHHHHhcCCceeeEEec------CCcceEEEEEC
Q 043623          326 RSEKEWERLFFDAGFTSYKITPL------LGLRSFIEVYL  359 (359)
Q Consensus       326 ~t~~e~~~ll~~aGf~~~~~~~~------~~~~~~i~~~~  359 (359)
                      .++..|-++|...+=+ +.|+.+      ++...|+++.|
T Consensus       165 ~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk  203 (257)
T COG4106         165 PSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK  203 (257)
T ss_pred             CCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence            6899999999988643 455543      56667887765

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=5e-14  Score=106.93  Aligned_cols=88  Identities=17%  Similarity=0.416  Sum_probs=75.2

Q ss_pred             EEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCCC--ccEEEecchhccCChhHHH
Q 043623          199 VEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIPS--ADAFLFKLIFHDYDDEVCL  271 (359)
Q Consensus       199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~~--~D~i~~~~vlh~~~d~~~~  271 (359)
                      ||+|||+|..+..+++. +..+++++|. +++++.+++   ..++.++.+|+.+ ++++  ||+|++.+++|++++  ..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence            79999999999999998 8889999999 677777664   5667799999998 7763  999999999999944  56


Q ss_pred             HHHHHHHHhcCCCCCCceEEE
Q 043623          272 KLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       272 ~iL~~~~~~L~p~~~gG~lli  292 (359)
                      +++++++++|||   ||+++|
T Consensus        78 ~~l~e~~rvLk~---gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKP---GGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEE---EEEEEE
T ss_pred             HHHHHHHHHcCc---CeEEeC
Confidence            889999999999   898875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.50  E-value=3.2e-13  Score=117.67  Aligned_cols=103  Identities=13%  Similarity=0.182  Sum_probs=88.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCCCC--CccEEEecchhccCCh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDD  267 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~~~d  267 (359)
                      ..++.+|||||||+|.++..+++..|+.+++++|+ +++++.+++ ..++.+..+|+.++++  .||+|++..+|||+++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            34668999999999999999999889999999999 889998876 5678899999888654  4999999999999988


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      ++..++++++.+++     ++.++|.|...+.
T Consensus       121 ~~~~~~l~el~r~~-----~~~v~i~e~~~~~  147 (204)
T TIGR03587       121 DNLPTAYRELYRCS-----NRYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHhhc-----CcEEEEEEeeCCC
Confidence            78889999999987     4688888886544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.50  E-value=5e-14  Score=122.60  Aligned_cols=142  Identities=11%  Similarity=0.114  Sum_probs=108.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------C----CCceEEeCCCCCCCCCccEEEecch
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------T----DNLKFIAGDMNQSIPSADAFLFKLI  261 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~----~rv~~~~~d~~~~~~~~D~i~~~~v  261 (359)
                      +.+|||||||+|.++..|++..  ..++|+|+ +++++.|++        .    -|+++...|.+...+.||+|+++.+
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            4789999999999999999984  68999999 788887764        2    2577777887775556999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-hhhhh-----hhcCCcccCHHHHHHHH
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-DALMM-----TCVPGIERSEKEWERLF  335 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~g~~~t~~e~~~ll  335 (359)
                      ++|..|+  ..+++.+.+.|+|   +|+++|......-.....     ...+ .....     +.+..+..+++++..++
T Consensus       168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~~-----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l  237 (282)
T KOG1270|consen  168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFAG-----TIFLAEIVLRIVPKGTHTWEKFINPEELTSIL  237 (282)
T ss_pred             HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhhc-----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence            9999886  4789999999999   999999877654433221     1111 11111     12345677999999999


Q ss_pred             HhcCCceeeEEec
Q 043623          336 FDAGFTSYKITPL  348 (359)
Q Consensus       336 ~~aGf~~~~~~~~  348 (359)
                      ..+++++..+...
T Consensus       238 ~~~~~~v~~v~G~  250 (282)
T KOG1270|consen  238 NANGAQVNDVVGE  250 (282)
T ss_pred             HhcCcchhhhhcc
Confidence            9999998877654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.48  E-value=1.7e-12  Score=117.12  Aligned_cols=146  Identities=14%  Similarity=0.175  Sum_probs=104.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAF  256 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i  256 (359)
                      ..+++.++  ..+..+|||+|||+|.++..+.+.  +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++  .||+|
T Consensus        32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V  107 (251)
T PRK10258         32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA  107 (251)
T ss_pred             HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence            34455554  345689999999999999988774  568999999 888887765 3446789999987 655  49999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHH
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFF  336 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~  336 (359)
                      +++.++|..++.  ..+|++++++|+|   ||.+++..+.....      ......+...-.........+.++|.++++
T Consensus       108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~------~el~~~~~~~~~~~~~~~~~~~~~l~~~l~  176 (251)
T PRK10258        108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSL------PELHQAWQAVDERPHANRFLPPDAIEQALN  176 (251)
T ss_pred             EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCch------HHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence            999999877765  4789999999999   89998876643221      111111111000112344568999999999


Q ss_pred             hcCCce
Q 043623          337 DAGFTS  342 (359)
Q Consensus       337 ~aGf~~  342 (359)
                      ..|+..
T Consensus       177 ~~~~~~  182 (251)
T PRK10258        177 GWRYQH  182 (251)
T ss_pred             hCCcee
Confidence            988764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.48  E-value=6.4e-13  Score=118.70  Aligned_cols=136  Identities=19%  Similarity=0.266  Sum_probs=103.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCC--CccEEEecchhccCCh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDD  267 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d  267 (359)
                      .+.+|||||||+|.++..+++.+|+.+++++|. +.+++.++.  .+++.++.+|+.+ +++  .||+|++.+++|+..+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            357999999999999999999999999999999 667765543  4589999999988 544  4999999999998877


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEE
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT  346 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  346 (359)
                      .  .++|++++++|+|   ||.+++.++.....      .......     ...+...++.++|.++++++ |+...+.
T Consensus       114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       114 L--SQALSELARVLKP---GGLLAFSTFGPGTL------HELRQSF-----GQHGLRYLSLDELKALLKNS-FELLTLE  175 (240)
T ss_pred             H--HHHHHHHHHHcCC---CcEEEEEeCCccCH------HHHHHHH-----HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence            5  4789999999999   99999876543221      0111111     11234556889999999998 8876653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.47  E-value=1.2e-12  Score=111.93  Aligned_cols=134  Identities=17%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCCCccEEEecchhccC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDY  265 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~  265 (359)
                      .++.+|||+|||+|.++..+++..+  +++++|+ +.+++.+++     ..+++++.+|..+ ..+.||+|+++..+|+.
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL   95 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence            3457899999999999999999876  8999999 778776654     3468889999887 33469999999888766


Q ss_pred             Chh-------------------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623          266 DDE-------------------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER  326 (359)
Q Consensus       266 ~d~-------------------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (359)
                      ++.                   ...++|+++.+.|+|   ||+++++.....                            
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~----------------------------  144 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN----------------------------  144 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence            532                   135689999999999   999998764321                            


Q ss_pred             CHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          327 SEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      ...++.++++++||....+..-+..+--+++||
T Consensus       145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR00537       145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK  177 (179)
T ss_pred             ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence            356778999999999988888887777777775

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.47  E-value=6.2e-13  Score=126.52  Aligned_cols=153  Identities=12%  Similarity=0.083  Sum_probs=114.0

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCCCCCCccEEEe
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQSIPSADAFLF  258 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~~~~~~D~i~~  258 (359)
                      .+++.+.  +.++.+|||||||+|.++..+++.+ +++++++|+ +++++.+++   ...+++...|+.+....||+|++
T Consensus       158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs  234 (383)
T PRK11705        158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS  234 (383)
T ss_pred             HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence            4555555  6778899999999999999999875 579999999 778877654   33578888887653235999999


Q ss_pred             cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                      ..+++|.++.....+++++++.|+|   ||++++.....+......     ....+  .....+|..++.+++.+.++ .
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~--~yifp~g~lps~~~i~~~~~-~  303 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWIN--KYIFPNGCLPSVRQIAQASE-G  303 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCce--eeecCCCcCCCHHHHHHHHH-C
Confidence            9999999877777899999999999   999999876544332111     00111  11235677788999888866 5


Q ss_pred             CCceeeEEecC
Q 043623          339 GFTSYKITPLL  349 (359)
Q Consensus       339 Gf~~~~~~~~~  349 (359)
                      ||.+.++..++
T Consensus       304 ~~~v~d~~~~~  314 (383)
T PRK11705        304 LFVMEDWHNFG  314 (383)
T ss_pred             CcEEEEEecCh
Confidence            89988877664

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.46  E-value=1.1e-12  Score=120.74  Aligned_cols=141  Identities=17%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~  253 (359)
                      ..++..++  ..++.+|||||||+|.++..+++.  +.+++++|. +.+++.+++     .-++++...|+.. +.+ .|
T Consensus       110 ~~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~f  185 (287)
T PRK12335        110 SEVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEY  185 (287)
T ss_pred             HHHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCc
Confidence            34444444  334569999999999999999885  579999999 777776543     3368888888876 344 49


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..+||+.+++....+++++.+.|+|   ||.++++.....+....+               ......++.+|+.+
T Consensus       186 D~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~---------------~p~~~~~~~~el~~  247 (287)
T PRK12335        186 DFILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP---------------MPFSFTFKEGELKD  247 (287)
T ss_pred             cEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC---------------CCCCcccCHHHHHH
Confidence            999999999999888888999999999999   999887665433321110               00012247899999


Q ss_pred             HHHhcCCceeeEE
Q 043623          334 LFFDAGFTSYKIT  346 (359)
Q Consensus       334 ll~~aGf~~~~~~  346 (359)
                      +++.  |+++...
T Consensus       248 ~~~~--~~i~~~~  258 (287)
T PRK12335        248 YYQD--WEIVKYN  258 (287)
T ss_pred             HhCC--CEEEEEe
Confidence            9975  8887764

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.46  E-value=1.3e-12  Score=116.30  Aligned_cols=145  Identities=14%  Similarity=0.184  Sum_probs=101.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~D~i~~~~vlh~  264 (359)
                      .+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++       .+++.+..+|+......||+|++..++||
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            456899999999999999999875  46999999 778777654       25899999995444346999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh-h-hhcCCcccCHHHHHHHHHhcCCce
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM-M-TCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                      ++++....+++++.+.+++    +.++....   ....   ...........- . ........+.++|.++++++||++
T Consensus       140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  209 (230)
T PRK07580        140 YPQEDAARMLAHLASLTRG----SLIFTFAP---YTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV  209 (230)
T ss_pred             CCHHHHHHHHHHHHhhcCC----eEEEEECC---ccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence            9988888999999987654    44433221   1100   000000000000 0 001234458899999999999999


Q ss_pred             eeEEecC
Q 043623          343 YKITPLL  349 (359)
Q Consensus       343 ~~~~~~~  349 (359)
                      .++.++.
T Consensus       210 ~~~~~~~  216 (230)
T PRK07580        210 VRTERIS  216 (230)
T ss_pred             Eeeeecc
Confidence            9998874

>PRK04266 fibrillarin; Provisional

Probab=99.45  E-value=2.7e-12  Score=113.26  Aligned_cols=139  Identities=14%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCceEEeCCCCCC-----CC-CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA----DLPETDNLKFIAGDMNQS-----IP-SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~----~a~~~~rv~~~~~d~~~~-----~~-~~D~i~~~~  260 (359)
                      +.++.+|||+|||+|.++..+++..+..+++++|. +.+++    .++...+|.++.+|...+     .+ .+|+|+.  
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~--  147 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ--  147 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence            66788999999999999999999887678999999 66655    444457899999998753     12 3899874  


Q ss_pred             hhccCChh-HHHHHHHHHHHhcCCCCCCceEEEE-eeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          261 IFHDYDDE-VCLKLLKNCREAVASSDGREKVIIV-DIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       261 vlh~~~d~-~~~~iL~~~~~~L~p~~~gG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                         +.+++ ....+|+++++.|||   ||+++|. ... +-.....   ..                +..++..++++++
T Consensus       148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~-~~d~~~~---~~----------------~~~~~~~~~l~~a  201 (226)
T PRK04266        148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKAR-SIDVTKD---PK----------------EIFKEEIRKLEEG  201 (226)
T ss_pred             ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecc-cccCcCC---HH----------------HHHHHHHHHHHHc
Confidence               34333 234568999999999   9999984 321 1111100   00                1224456999999


Q ss_pred             CCceeeEEecCCc---ceEEEEE
Q 043623          339 GFTSYKITPLLGL---RSFIEVY  358 (359)
Q Consensus       339 Gf~~~~~~~~~~~---~~~i~~~  358 (359)
                      ||+.++...+..+   +.+++.+
T Consensus       202 GF~~i~~~~l~p~~~~h~~~v~~  224 (226)
T PRK04266        202 GFEILEVVDLEPYHKDHAAVVAR  224 (226)
T ss_pred             CCeEEEEEcCCCCcCCeEEEEEE
Confidence            9999999888543   5555443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=3.2e-14  Score=109.40  Aligned_cols=87  Identities=23%  Similarity=0.420  Sum_probs=58.2

Q ss_pred             EEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CceEEeCCCCCC-CC-CccEEEecchhccCC
Q 043623          199 VEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TD---NLKFIAGDMNQS-IP-SADAFLFKLIFHDYD  266 (359)
Q Consensus       199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~---rv~~~~~d~~~~-~~-~~D~i~~~~vlh~~~  266 (359)
                      ||||||+|.++..+++++|..+++++|+ +.+++.+++      ..   ++++...+..+. .+ .||+|++.++||+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999999999999999999999999 889977775      22   234444444442 22 699999999999995


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceE
Q 043623          267 DEVCLKLLKNCREAVASSDGREKV  290 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~l  290 (359)
                      +  ...+|+++++.|+|   ||.|
T Consensus        81 ~--~~~~l~~~~~~L~p---gG~l   99 (99)
T PF08242_consen   81 D--IEAVLRNIYRLLKP---GGIL   99 (99)
T ss_dssp             ---HHHHHHHHTTT-TS---S-EE
T ss_pred             h--HHHHHHHHHHHcCC---CCCC
Confidence            5  45889999999999   8875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.44  E-value=1e-12  Score=119.09  Aligned_cols=100  Identities=17%  Similarity=0.294  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCCchH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC--------------------------
Q 043623          193 DGLSSLVEVGGGTGS----FARIISEAFP-----SIKCSVLEL-PHVIADLPET--------------------------  236 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~i~~a~~~--------------------------  236 (359)
                      .++.+|+|+|||||.    +++.+++.+|     +.++++.|+ +.+++.|++.                          
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            445799999999996    5666677654     578999999 7888877641                          


Q ss_pred             -------CCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          237 -------DNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       237 -------~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                             .+|+|..+|+.+ +.+  .||+|++.++||+++++...++++++++.|+|   ||.+++-..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~~  243 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGHS  243 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEECc
Confidence                   379999999998 433  49999999999999988888999999999999   999888543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.44  E-value=1.5e-12  Score=128.30  Aligned_cols=144  Identities=16%  Similarity=0.181  Sum_probs=110.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC---CCC--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ---SIP--  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~---~~~--  251 (359)
                      ..+++.++  ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++.    .++++++.+|+.+   +++  
T Consensus        27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~  102 (475)
T PLN02336         27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG  102 (475)
T ss_pred             hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence            45555555  4456799999999999999999875  37999998 778776542    4679999999964   344  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++..++|++++++..++|+++++.|+|   ||.+++.|..........      ..       ......++...|
T Consensus       103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~  166 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY  166 (475)
T ss_pred             CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence            49999999999999998888999999999999   999999987654432110      00       111223468899


Q ss_pred             HHHHHhcCCceeeE
Q 043623          332 ERLFFDAGFTSYKI  345 (359)
Q Consensus       332 ~~ll~~aGf~~~~~  345 (359)
                      .++|.++||.....
T Consensus       167 ~~~f~~~~~~~~~~  180 (475)
T PLN02336        167 TKVFKECHTRDEDG  180 (475)
T ss_pred             HHHHHHheeccCCC
Confidence            99999999987643

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.44  E-value=1.9e-12  Score=111.50  Aligned_cols=120  Identities=18%  Similarity=0.300  Sum_probs=93.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-CccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~D~i~~~~vlh  263 (359)
                      ..+..+|||||||+|.++..+++++|+.+++++|. +.+++.+++      ..+++++.+|...+.+ .||+|++....+
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~  108 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG  108 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence            56778999999999999999999999999999999 777776653      3578999998865444 499999987654


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      +     ...+++.+.+.|+|   ||++++.....                            .+.+++.+++++.||+.+
T Consensus       109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~  152 (187)
T PRK08287        109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL  152 (187)
T ss_pred             C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence            3     24578999999999   89887743210                            035677889999999877


Q ss_pred             eEEe
Q 043623          344 KITP  347 (359)
Q Consensus       344 ~~~~  347 (359)
                      ++..
T Consensus       153 ~~~~  156 (187)
T PRK08287        153 DCVQ  156 (187)
T ss_pred             eEEE
Confidence            7543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.41  E-value=3.3e-13  Score=116.78  Aligned_cols=143  Identities=12%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCC--ceEEeCCCCC-CC--CCccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDN--LKFIAGDMNQ-SI--PSADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~r--v~~~~~d~~~-~~--~~~D~i~~~~vlh~  264 (359)
                      .+.+|||||||-|.++..+++..  .+|+++|+ ++.|+.|+.   ...  |.+.....++ ..  ..||+|++..+|+|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            56899999999999999999985  79999999 788888774   233  4466666665 22  46999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhh-hhc-----CCcccCHHHHHHHHHh
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMM-TCV-----PGIERSEKEWERLFFD  337 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~g~~~t~~e~~~ll~~  337 (359)
                      .+|++  .+++.+.+.+||   ||.+++...........      ...... ..+ ...     -.+...++|+..++.+
T Consensus       137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~------~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~  205 (243)
T COG2227         137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYL------LAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLG  205 (243)
T ss_pred             cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHH------HHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhccc
Confidence            99986  479999999999   88888877663332111      111111 111 112     2456789999999999


Q ss_pred             cCCceeeEEecC
Q 043623          338 AGFTSYKITPLL  349 (359)
Q Consensus       338 aGf~~~~~~~~~  349 (359)
                      +|+.+.+...+.
T Consensus       206 ~~~~~~~~~g~~  217 (243)
T COG2227         206 ANLKIIDRKGLT  217 (243)
T ss_pred             CCceEEeecceE
Confidence            999998887663

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.41  E-value=1.9e-12  Score=115.99  Aligned_cols=152  Identities=9%  Similarity=0.110  Sum_probs=101.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHH------HhcCCC-CCCceEEeCCCCC-C-CC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHV------IADLPE-TDNLKFIAGDMNQ-S-IP  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~------i~~a~~-~~rv~~~~~d~~~-~-~~  251 (359)
                      ..+...++  --.+++|||||||+|.++..++.+.|. .++|+|- +..      ++.... ..++.+....+++ + ..
T Consensus       105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~  181 (315)
T PF08003_consen  105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG  181 (315)
T ss_pred             HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence            34455553  124689999999999999999999775 7999996 222      222221 2333444334444 3 23


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC--CcccCHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP--GIERSEK  329 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~t~~  329 (359)
                      .||+|++..||+|..++  ...|+.+++.|+|   ||.+++-..+.+......-.+.. .+      +.+.  ....|..
T Consensus       182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~~-rY------a~m~nv~FiPs~~  249 (315)
T PF08003_consen  182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPED-RY------AKMRNVWFIPSVA  249 (315)
T ss_pred             CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccCC-cc------cCCCceEEeCCHH
Confidence            59999999999998886  4779999999999   78777655555544332100110 00      0111  2345999


Q ss_pred             HHHHHHHhcCCceeeEEec
Q 043623          330 EWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~~  348 (359)
                      .+..|++++||+.+++...
T Consensus       250 ~L~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  250 ALKNWLERAGFKDVRCVDV  268 (315)
T ss_pred             HHHHHHHHcCCceEEEecC
Confidence            9999999999999999765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.40  E-value=5.8e-13  Score=102.82  Aligned_cols=88  Identities=19%  Similarity=0.389  Sum_probs=73.2

Q ss_pred             EEEEcCCchHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CC--CCccEEEec-chhcc
Q 043623          198 LVEVGGGTGSFARIISEAF---PSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SI--PSADAFLFK-LIFHD  264 (359)
Q Consensus       198 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~--~~~D~i~~~-~vlh~  264 (359)
                      |||+|||+|..+..+.+.+   |..+++++|+ +++++.+++     ..+++++.+|+.+ +.  ..||+|+++ .++|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999986   5689999999 788887764     3589999999988 43  359999995 55999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCc
Q 043623          265 YDDEVCLKLLKNCREAVASSDGRE  288 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG  288 (359)
                      +++++..++|+++.+.|+|   ||
T Consensus        81 ~~~~~~~~ll~~~~~~l~p---gG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRP---GG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEE---EE
T ss_pred             CCHHHHHHHHHHHHHHhCC---CC
Confidence            9999999999999999999   66

>TIGR03438 probable methyltransferase

Probab=99.38  E-value=4.5e-12  Score=117.21  Aligned_cols=97  Identities=16%  Similarity=0.336  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CCC-Cc-----cE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SIP-SA-----DA  255 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~~-~~-----D~  255 (359)
                      +++.+|||+|||+|..+..++++.+ ..+++++|+ +++++.+++       ..+|.++.+|+.+  +++ .+     .+
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            3567999999999999999999987 589999999 778766543       2346678999987  233 22     35


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      +++...+++++++++..+|++++++|+|   ||.++|
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li  175 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI  175 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence            5666789999999999999999999999   888876

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.37  E-value=1.3e-11  Score=108.20  Aligned_cols=131  Identities=11%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCC-C---
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQ-S---  249 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~-~---  249 (359)
                      .+..+|||+|||.|..+..|+++  +.+|+++|+ +.+++.+.                  ...+|+++.+|+++ +   
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45689999999999999999986  678999999 77776531                  13579999999998 3   


Q ss_pred             CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC-CchHHHHHHHhhhhhhhhcCCcccCH
Q 043623          250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD-KPEITEAKLLYDALMMTCVPGIERSE  328 (359)
Q Consensus       250 ~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t~  328 (359)
                      .+.||.|+-..++|+++.+....+++++.++|+|   ||++++.....+.... .+                  ....+.
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gp------------------p~~~~~  169 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGP------------------PFSVSP  169 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCc------------------CCCCCH
Confidence            2359999999999999999889999999999999   8987777665432211 11                  012488


Q ss_pred             HHHHHHHHhcCCceeeEEe
Q 043623          329 KEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       329 ~e~~~ll~~aGf~~~~~~~  347 (359)
                      +++.++|+. +|.+..+..
T Consensus       170 ~eL~~~f~~-~~~i~~~~~  187 (213)
T TIGR03840       170 AEVEALYGG-HYEIELLES  187 (213)
T ss_pred             HHHHHHhcC-CceEEEEee
Confidence            999999974 455554443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.36  E-value=5.2e-12  Score=107.64  Aligned_cols=140  Identities=14%  Similarity=0.227  Sum_probs=96.2

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~  253 (359)
                      ..++..++  ..++.++||+|||.|..+..|+++  +..|+++|. +..++.++.     .-.|+....|+.+ .++ .|
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            45666666  556789999999999999999998  678999998 555554432     4448889999988 555 49


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..++++.+.+...++++++.+.++|   ||.+++......+....+        ..       ....+...|+.+
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~--------~~-------~~f~~~~~EL~~  157 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCP--------SP-------FPFLLKPGELRE  157 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--S--------S---------S--B-TTHHHH
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCC--------CC-------CCcccCHHHHHH
Confidence            999999999999999889999999999999   888777655432221111        00       011236678888


Q ss_pred             HHHhcCCceeeE
Q 043623          334 LFFDAGFTSYKI  345 (359)
Q Consensus       334 ll~~aGf~~~~~  345 (359)
                      .++  ||.+++.
T Consensus       158 ~y~--dW~il~y  167 (192)
T PF03848_consen  158 YYA--DWEILKY  167 (192)
T ss_dssp             HTT--TSEEEEE
T ss_pred             HhC--CCeEEEE
Confidence            886  5777664

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.36  E-value=6.4e-12  Score=116.08  Aligned_cols=142  Identities=16%  Similarity=0.145  Sum_probs=95.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCCCCccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSIPSADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~~~~D~i~~~~v  261 (359)
                      ++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++           ..++.|...|+.+....||+|++..+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            4679999999999999999986  568999999 778876653           13578888887653345999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh---cCCcccCHHHHHHHHHhc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC---VPGIERSEKEWERLFFDA  338 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~t~~e~~~ll~~a  338 (359)
                      +||++++....+++.+.+ +.+    |+++|..  .+....   +......... +...   ......+.++++++|+++
T Consensus       222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~---~~~l~~~g~~-~~g~~~~~r~y~~s~eel~~lL~~A  290 (315)
T PLN02585        222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLY---YDILKRIGEL-FPGPSKATRAYLHAEADVERALKKA  290 (315)
T ss_pred             EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchH---HHHHHHHHhh-cCCCCcCceeeeCCHHHHHHHHHHC
Confidence            999998877778888875 444    4555532  111110   0000001000 0000   011233799999999999


Q ss_pred             CCceeeEEec
Q 043623          339 GFTSYKITPL  348 (359)
Q Consensus       339 Gf~~~~~~~~  348 (359)
                      ||++.+....
T Consensus       291 Gf~v~~~~~~  300 (315)
T PLN02585        291 GWKVARREMT  300 (315)
T ss_pred             CCEEEEEEEe
Confidence            9998776544

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.35  E-value=8.9e-12  Score=106.50  Aligned_cols=119  Identities=20%  Similarity=0.226  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-CCccEEEecchhccC
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-PSADAFLFKLIFHDY  265 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-~~~D~i~~~~vlh~~  265 (359)
                      +.+|||||||+|.++..++...|+.+++++|. +.+++.+++      .++++++.+|+.+ +. +.||+|++.. +|++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            68999999999999999999999999999999 666655432      3579999999987 32 3599998876 5432


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh---cCCce
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD---AGFTS  342 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~---aGf~~  342 (359)
                           ..+++.+++.|+|   ||.+++...     . .                       ...++..+.++   .||+.
T Consensus       122 -----~~~~~~~~~~Lkp---gG~lvi~~~-----~-~-----------------------~~~~~~~~~e~~~~~~~~~  164 (181)
T TIGR00138       122 -----NVLLELTLNLLKV---GGYFLAYKG-----K-K-----------------------YLDEIEEAKRKCQVLGVEP  164 (181)
T ss_pred             -----HHHHHHHHHhcCC---CCEEEEEcC-----C-C-----------------------cHHHHHHHHHhhhhcCceE
Confidence                 3568888999999   899887531     1 1                       23334444444   79999


Q ss_pred             eeEEecCCc
Q 043623          343 YKITPLLGL  351 (359)
Q Consensus       343 ~~~~~~~~~  351 (359)
                      +++.+....
T Consensus       165 ~~~~~~~~~  173 (181)
T TIGR00138       165 LEVPPLTGP  173 (181)
T ss_pred             eeccccCCC
Confidence            888887543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.35  E-value=1.4e-11  Score=116.12  Aligned_cols=108  Identities=18%  Similarity=0.324  Sum_probs=86.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCCCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQSIP  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~~~~  251 (359)
                      ..+++.++  .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++         ..+++++..|.++..+
T Consensus       218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            45666666  33346999999999999999999999999999999 667776653         2378999999887443


Q ss_pred             --CccEEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          252 --SADAFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       252 --~~D~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                        .||+|+++-.+|.   +++..+.++++.+++.|+|   ||.++++-
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence              5999999866653   4566677999999999999   99998874

>PLN03075 nicotianamine synthase; Provisional

Probab=99.34  E-value=6.6e-12  Score=113.79  Aligned_cols=137  Identities=14%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             CCCCeEEEEcCCchHHHHH--HHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCCC---CCccEEEe
Q 043623          193 DGLSSLVEVGGGTGSFARI--ISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQSI---PSADAFLF  258 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~~---~~~D~i~~  258 (359)
                      .++.+|+|||||.|.++..  ++..+|+.+++++|. +++++.|++        .++|+|+.+|..+..   ..||+|++
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            3679999999998855443  335679999999999 777776553        578999999998732   36999999


Q ss_pred             cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                      . ++|+|+.++-.++|+++++.|+|   ||.+++--.   ..       .....          ....++++.+      
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G-------~r~~L----------Yp~v~~~~~~------  251 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HG-------ARAFL----------YPVVDPCDLR------  251 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cc-------hHhhc----------CCCCChhhCC------
Confidence            9 99999766678999999999999   887776431   11       01101          1111333333      


Q ss_pred             CCceeeEE-ecC-CcceEEEEEC
Q 043623          339 GFTSYKIT-PLL-GLRSFIEVYL  359 (359)
Q Consensus       339 Gf~~~~~~-~~~-~~~~~i~~~~  359 (359)
                      ||.+..++ |.+ -++++|.++|
T Consensus       252 gf~~~~~~~P~~~v~Nsvi~~r~  274 (296)
T PLN03075        252 GFEVLSVFHPTDEVINSVIIARK  274 (296)
T ss_pred             CeEEEEEECCCCCceeeEEEEEe
Confidence            99976654 443 4689999886

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.33  E-value=3.2e-11  Score=103.36  Aligned_cols=118  Identities=19%  Similarity=0.221  Sum_probs=90.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-CccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh  263 (359)
                      +++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++      .++++++.+|+.+ +.. .||+|++..+  
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            3478999999999999999999999999999999 777776653      3459999999987 333 5999998752  


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                        .+  ...+++.+++.|+|   ||++++.+...                             ...++.++.++.|+++.
T Consensus       122 --~~--~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~  165 (187)
T PRK00107        122 --AS--LSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE  165 (187)
T ss_pred             --cC--HHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence              22  35789999999999   99998874320                             23445666677798877


Q ss_pred             eEEec
Q 043623          344 KITPL  348 (359)
Q Consensus       344 ~~~~~  348 (359)
                      ++.-.
T Consensus       166 ~~~~~  170 (187)
T PRK00107        166 EVIEL  170 (187)
T ss_pred             eeEEE
Confidence            76543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.32  E-value=2.1e-11  Score=108.77  Aligned_cols=144  Identities=14%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--C-CCccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--I-PSADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~-~~~D~i~~~~vl  262 (359)
                      .++.+|||||||+|.++..+++.  ..+++++|. +.+++.+++     ..+++++..|+.+ +  . ..||+|++.+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            35689999999999999998885  468999998 666665543     3457788777765 2  2 249999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH---hhhhhhhh---cCCcccCHHHHHHHHH
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL---YDALMMTC---VPGIERSEKEWERLFF  336 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~g~~~t~~e~~~ll~  336 (359)
                      ++.++..  .+|+++.+.|+|   ||.+++......   ... . .....   +-......   ...+..+.++|.++++
T Consensus       125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (233)
T PRK05134        125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNRN---LKS-Y-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR  194 (233)
T ss_pred             hccCCHH--HHHHHHHHHcCC---CcEEEEEecCCC---hHH-H-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence            9988754  679999999999   899887754311   100 0 00000   00000000   1234568999999999


Q ss_pred             hcCCceeeEEec
Q 043623          337 DAGFTSYKITPL  348 (359)
Q Consensus       337 ~aGf~~~~~~~~  348 (359)
                      ++||+++++...
T Consensus       195 ~~Gf~~v~~~~~  206 (233)
T PRK05134        195 QAGLEVQDITGL  206 (233)
T ss_pred             HCCCeEeeeeeE
Confidence            999999888643

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.32  E-value=6.1e-12  Score=107.88  Aligned_cols=140  Identities=17%  Similarity=0.301  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCc-eEEeCCCCC--CCC-CccEEEecchhc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNL-KFIAGDMNQ--SIP-SADAFLFKLIFH  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv-~~~~~d~~~--~~~-~~D~i~~~~vlh  263 (359)
                      +..+.||+|+|.|..+..++...-+ ++..+|. +..++.|++     ..++ ++.+..+.+  |.+ .||+||+.+++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            4679999999999999988665432 6777776 677777663     3444 455555554  443 499999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      |++|++.+++|++++.+|+|   +|.|+|-|.+......         .+|    ...++-.|+.+.|+++|++||++++
T Consensus       134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D----~~DsSvTRs~~~~~~lF~~AGl~~v  197 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFD----EEDSSVTRSDEHFRELFKQAGLRLV  197 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEE----TTTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred             cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccC----CccCeeecCHHHHHHHHHHcCCEEE
Confidence            99999999999999999999   8999998887654321         111    1234556899999999999999999


Q ss_pred             eEEecCC
Q 043623          344 KITPLLG  350 (359)
Q Consensus       344 ~~~~~~~  350 (359)
                      +.....+
T Consensus       198 ~~~~Q~~  204 (218)
T PF05891_consen  198 KEEKQKG  204 (218)
T ss_dssp             EEEE-TT
T ss_pred             EeccccC
Confidence            8776644

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.30  E-value=4.8e-11  Score=111.81  Aligned_cols=108  Identities=16%  Similarity=0.250  Sum_probs=84.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC-CccE
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP-SADA  255 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~-~~D~  255 (359)
                      .++..++  .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++     .-..+++..|.++..+ .||+
T Consensus       187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl  264 (342)
T PRK09489        187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM  264 (342)
T ss_pred             HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence            3455554  23346899999999999999999999999999999 677776653     2235678888877444 4999


Q ss_pred             EEecchhccC---ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          256 FLFKLIFHDY---DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       256 i~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      |+++-.+|..   ......++++++.+.|+|   ||.++|+-.
T Consensus       265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan  304 (342)
T PRK09489        265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN  304 (342)
T ss_pred             EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence            9999988863   344567899999999999   999988654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.29  E-value=2.5e-11  Score=105.20  Aligned_cols=141  Identities=12%  Similarity=0.155  Sum_probs=94.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccEEEecchhccCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDYD  266 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~~  266 (359)
                      ++..+|||||||+|.++..+++. ...+++++|+ +++++.++. .+++++.+|+.+   +++  .||+|++++++|+++
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~   89 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR   89 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence            45679999999999999988775 4567899998 777777653 468888888865   233  499999999999998


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh----------hhhcCCcccCHHHHHHHHH
Q 043623          267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM----------MTCVPGIERSEKEWERLFF  336 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~t~~e~~~ll~  336 (359)
                      +..  ++|+++.+.+++      +++.-+..   .... . .......-.+          ......+..+.+++.++++
T Consensus        90 d~~--~~l~e~~r~~~~------~ii~~p~~---~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~  156 (194)
T TIGR02081        90 NPE--EILDEMLRVGRH------AIVSFPNF---GYWR-V-RWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG  156 (194)
T ss_pred             CHH--HHHHHHHHhCCe------EEEEcCCh---hHHH-H-HHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence            754  678888776543      33321111   0000 0 0000000000          0011234678999999999


Q ss_pred             hcCCceeeEEec
Q 043623          337 DAGFTSYKITPL  348 (359)
Q Consensus       337 ~aGf~~~~~~~~  348 (359)
                      ++||++++..-.
T Consensus       157 ~~Gf~v~~~~~~  168 (194)
T TIGR02081       157 ELNLRILDRAAF  168 (194)
T ss_pred             HCCCEEEEEEEe
Confidence            999999887665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PTZ00146 fibrillarin; Provisional

Probab=99.28  E-value=1.9e-10  Score=103.88  Aligned_cols=133  Identities=14%  Similarity=0.131  Sum_probs=94.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCceEEeCCCCCC------CCCccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PH----VIADLPETDNLKFIAGDMNQS------IPSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~i~~a~~~~rv~~~~~d~~~~------~~~~D~i~~~  259 (359)
                      +.+..+|||+|||+|.++..+++.. +.-+++++|+ +.    +++.++...+|.++.+|+..+      .+.+|+|++.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            5678899999999999999999986 4568999998 43    556665568899999998753      2359999887


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      ..   .+| +...++.++++.|||   ||.++|.-.........+   .. ..+             . +|. ++|+++|
T Consensus       210 va---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~---pe-~~f-------------~-~ev-~~L~~~G  263 (293)
T PTZ00146        210 VA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK---PE-VVF-------------A-SEV-QKLKKEG  263 (293)
T ss_pred             CC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC---HH-HHH-------------H-HHH-HHHHHcC
Confidence            63   233 334566789999999   999998422211111111   00 011             2 444 8899999


Q ss_pred             CceeeEEecCC
Q 043623          340 FTSYKITPLLG  350 (359)
Q Consensus       340 f~~~~~~~~~~  350 (359)
                      |+.++.+.+..
T Consensus       264 F~~~e~v~L~P  274 (293)
T PTZ00146        264 LKPKEQLTLEP  274 (293)
T ss_pred             CceEEEEecCC
Confidence            99999988853

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.28  E-value=8.1e-12  Score=105.32  Aligned_cols=132  Identities=14%  Similarity=0.148  Sum_probs=96.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCCCC--CccEEEecchhcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQSIP--SADAFLFKLIFHD  264 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~  264 (359)
                      -....+++|+|||.|.++..|+.+.  -+.+++|+ +.+++.+++    .++|+++..|+-+.+|  .||+|+++.++|+
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            4556899999999999999999985  37999999 788887764    6899999999988555  4999999999999


Q ss_pred             CCh-hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          265 YDD-EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       265 ~~d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      +++ ++...+++++.++|+|   ||.+++.....          ...         ...|.....+.+.++|++. |..+
T Consensus       119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd----------~~c---------~~wgh~~ga~tv~~~~~~~-~~~~  175 (201)
T PF05401_consen  119 LDDAEDLRAALDRLVAALAP---GGHLVFGHARD----------ANC---------RRWGHAAGAETVLEMLQEH-LTEV  175 (201)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-H----------HHH---------HHTT-S--HHHHHHHHHHH-SEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCC---CCEEEEEEecC----------Ccc---------cccCcccchHHHHHHHHHH-hhhe
Confidence            986 6678899999999999   89998876520          110         1134555788999999987 6666


Q ss_pred             eEEec
Q 043623          344 KITPL  348 (359)
Q Consensus       344 ~~~~~  348 (359)
                      +...+
T Consensus       176 ~~~~~  180 (201)
T PF05401_consen  176 ERVEC  180 (201)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            66555

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.26  E-value=7.6e-11  Score=103.63  Aligned_cols=132  Identities=13%  Similarity=0.145  Sum_probs=99.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCCC---
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQS---  249 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~~---  249 (359)
                      ..+..+|||+|||.|..+..|+++  +.+|+++|+ +.+++.+.                  ...+|++..+|+++.   
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            345689999999999999999985  678999999 67666431                  146789999999982   


Q ss_pred             -CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC-CCchHHHHHHHhhhhhhhhcCCcccC
Q 043623          250 -IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK-DKPEITEAKLLYDALMMTCVPGIERS  327 (359)
Q Consensus       250 -~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~t  327 (359)
                       .+.||+|+-..++|+++.+...++++.+.++|+|   ||+++++....++.. ..+                  ....+
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gP------------------p~~~~  171 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGP------------------PFSVS  171 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCC------------------CCCCC
Confidence             2359999999999999999999999999999999   887665544433221 111                  01248


Q ss_pred             HHHHHHHHHhcCCceeeEEe
Q 043623          328 EKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~  347 (359)
                      .+|+.++|+. +|.+..+..
T Consensus       172 ~~el~~~~~~-~~~i~~~~~  190 (218)
T PRK13255        172 DEEVEALYAG-CFEIELLER  190 (218)
T ss_pred             HHHHHHHhcC-CceEEEeee
Confidence            9999999964 266555543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.26  E-value=4e-11  Score=106.24  Aligned_cols=142  Identities=11%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CceEEeCCCCC-CC---CCccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TD-NLKFIAGDMNQ-SI---PSADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~-rv~~~~~d~~~-~~---~~~D~i~~~~vl  262 (359)
                      .+.+|||+|||+|.++..+++..+  +++++|. +.+++.++.     .. ++++...|+.+ +.   ..||+|++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            467999999999999999888644  6999998 667665543     22 58888888766 32   249999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-h---h---cCCcccCHHHHHHHH
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-T---C---VPGIERSEKEWERLF  335 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~---~---~~g~~~t~~e~~~ll  335 (359)
                      |+..+..  .+|+++++.|+|   ||.+++.....+..  .    .........+. .   .   ......+..+|.+++
T Consensus       123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  191 (224)
T TIGR01983       123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPK--S----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL  191 (224)
T ss_pred             HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCch--H----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence            9998764  689999999999   89988876532111  0    00011111011 0   0   112345889999999


Q ss_pred             HhcCCceeeEEec
Q 043623          336 FDAGFTSYKITPL  348 (359)
Q Consensus       336 ~~aGf~~~~~~~~  348 (359)
                      +++||+++++...
T Consensus       192 ~~~G~~i~~~~~~  204 (224)
T TIGR01983       192 ESAGLRVKDVKGL  204 (224)
T ss_pred             HHcCCeeeeeeeE
Confidence            9999999888754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.3e-10  Score=104.39  Aligned_cols=109  Identities=13%  Similarity=0.266  Sum_probs=87.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~  253 (359)
                      +.+++.++  .....+|||+|||.|.+++.+++.+|+.+++.+|. ..+++.+++      ..+..+...|.+++.. .|
T Consensus       148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf  225 (300)
T COG2813         148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF  225 (300)
T ss_pred             HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence            56777777  55556999999999999999999999999999999 567777765      2333567788888655 49


Q ss_pred             cEEEecchhccC---ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          254 DAFLFKLIFHDY---DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       254 D~i~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      |+|+++=-+|.=   .+.-+.++++.+.+.|++   ||.|.|+-.
T Consensus       226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan  267 (300)
T COG2813         226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN  267 (300)
T ss_pred             cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence            999999998853   234455899999999999   999988765

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.24  E-value=1.4e-11  Score=106.11  Aligned_cols=145  Identities=17%  Similarity=0.246  Sum_probs=109.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC-----CC--CccEEEecc
Q 043623          196 SSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS-----IP--SADAFLFKL  260 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~-----~~--~~D~i~~~~  260 (359)
                      .+||+||||.|.....+++..|+  +++...|. |.+++..++     ..++.....|+..+     .+  ++|++++-+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            38999999999999999999988  99999998 888887664     45666666676652     11  399999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc---ccCHHHHHHHHHh
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI---ERSEKEWERLFFD  337 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~t~~e~~~ll~~  337 (359)
                      +|.-.+++.....++++++.|||   ||.|++-|....+-.... +. ....++-+..+...|.   .++.+++.++|.+
T Consensus       153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~  227 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK  227 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence            99999999999999999999999   999999988765542211 00 0011222222232232   4689999999999


Q ss_pred             cCCceeeE
Q 043623          338 AGFTSYKI  345 (359)
Q Consensus       338 aGf~~~~~  345 (359)
                      +||..++.
T Consensus       228 agf~~~~~  235 (264)
T KOG2361|consen  228 AGFEEVQL  235 (264)
T ss_pred             cccchhcc
Confidence            99997764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.23  E-value=4.2e-11  Score=101.51  Aligned_cols=99  Identities=15%  Similarity=0.341  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~  264 (359)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++      ..+++++..|.++..+  .||+|+++--+|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            568999999999999999999999999999999 777776653      2338999999998554  5999999987765


Q ss_pred             CCh---hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          265 YDD---EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       265 ~~d---~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -.+   +-..++++.+.+.|+|   ||.++++-.
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~~  141 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVIN  141 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccC---CCEEEEEee
Confidence            543   3457899999999999   899976443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.23  E-value=7.6e-11  Score=94.08  Aligned_cols=100  Identities=14%  Similarity=0.267  Sum_probs=78.1

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CC-CC
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SI-PS  252 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~-~~  252 (359)
                      ++..+.  ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.++.      ..+++++.+|...   .. +.
T Consensus        11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence            444444  45567999999999999999999999999999999 667766543      4578998888764   12 35


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||+|++....+     ...++++.+++.|+|   ||++++.
T Consensus        89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN  121 (124)
T ss_pred             CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence            99999976543     235889999999999   8988764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.21  E-value=1.7e-10  Score=104.00  Aligned_cols=124  Identities=19%  Similarity=0.316  Sum_probs=93.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchhc-
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIFH-  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vlh-  263 (359)
                      ...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++.      .++++++.+|++++++  .||+|+++-..+ 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            446999999999999999999999999999998 777776653      3479999999988543  499999853322 


Q ss_pred             -----cCChhH------------------HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623          264 -----DYDDEV------------------CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC  320 (359)
Q Consensus       264 -----~~~d~~------------------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (359)
                           .+..+.                  ...+++++.+.|+|   ||.+++...      .                  
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------~------------------  219 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------Y------------------  219 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC------c------------------
Confidence                 222111                  23688999999999   888776311      0                  


Q ss_pred             cCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623          321 VPGIERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                           ...+++.++|+++||+.+++....
T Consensus       220 -----~~~~~~~~~l~~~gf~~v~~~~d~  243 (251)
T TIGR03534       220 -----DQGEAVRALFEAAGFADVETRKDL  243 (251)
T ss_pred             -----cHHHHHHHHHHhCCCCceEEEeCC
Confidence                 135678999999999988876653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.21  E-value=3.7e-10  Score=103.28  Aligned_cols=136  Identities=15%  Similarity=0.304  Sum_probs=99.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vl  262 (359)
                      ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++      ..++.++.+|++++.+  .||+|+++--.
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            34567999999999999999999999999999999 677766553      4689999999988544  59999985322


Q ss_pred             ------ccCCh------------------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh
Q 043623          263 ------HDYDD------------------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM  318 (359)
Q Consensus       263 ------h~~~d------------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~  318 (359)
                            +...+                  +...++++++.+.|+|   ||.+++ +.      ..               
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~------g~---------------  240 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI------GY---------------  240 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE------Cc---------------
Confidence                  11111                  1235688999999999   888876 22      00               


Q ss_pred             hhcCCcccCHHHHHHHHHhcCCceeeEE-ecCCcceEEEEEC
Q 043623          319 TCVPGIERSEKEWERLFFDAGFTSYKIT-PLLGLRSFIEVYL  359 (359)
Q Consensus       319 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~~~  359 (359)
                             ...+++.+++++.||+.+++. ...+...++.+++
T Consensus       241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~  275 (275)
T PRK09328        241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR  275 (275)
T ss_pred             -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence                   024568899999999877664 4456667777654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.18  E-value=3.1e-10  Score=95.63  Aligned_cols=140  Identities=16%  Similarity=0.205  Sum_probs=97.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccEEEecchhccC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDY  265 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~  265 (359)
                      .+++.+|||+|||.|.++..|.+. .++++.|+|+ ++.+..+. ...+.++.+|+.+   .+|  +||.|+++.+|.++
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~   88 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV   88 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence            467899999999999999888885 6889999999 55454443 4668899999987   355  39999999999888


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh----hhh----------hcCCcccCHHHH
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL----MMT----------CVPGIERSEKEW  331 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~g~~~t~~e~  331 (359)
                      .+++  ++|+++.|.      |.+.+|.=+...       +  ......+.    |-.          ..+=+..|..++
T Consensus        89 ~~P~--~vL~EmlRV------gr~~IVsFPNFg-------~--W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF  151 (193)
T PF07021_consen   89 RRPD--EVLEEMLRV------GRRAIVSFPNFG-------H--WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF  151 (193)
T ss_pred             hHHH--HHHHHHHHh------cCeEEEEecChH-------H--HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence            7765  568877544      344444322110       0  00111111    110          112345699999


Q ss_pred             HHHHHhcCCceeeEEecCC
Q 043623          332 ERLFFDAGFTSYKITPLLG  350 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~~~~  350 (359)
                      +++.++.|+++.+...+.+
T Consensus       152 e~lc~~~~i~I~~~~~~~~  170 (193)
T PF07021_consen  152 EDLCRELGIRIEERVFLDG  170 (193)
T ss_pred             HHHHHHCCCEEEEEEEEcC
Confidence            9999999999999888754

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.17  E-value=7.1e-10  Score=97.26  Aligned_cols=101  Identities=11%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCC-CC--
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQ-SI--  250 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~-~~--  250 (359)
                      .++.+||+.|||.|.-+..|+.+  +.+|+++|+ +.+++.+.                  ...+|++.++|+++ +.  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            45689999999999999999997  568999999 66666531                  15689999999998 42  


Q ss_pred             ---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          251 ---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       251 ---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                         ..||+|+-..+|+.++++...++.+.+.+.|+|   ||.++++....+
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~  167 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD  167 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence               249999999999999999999999999999999   999988876443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.16  E-value=8.6e-10  Score=99.38  Aligned_cols=122  Identities=18%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---C----CCceEEeCCCCCCCCCccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---T----DNLKFIAGDMNQSIPSADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~----~rv~~~~~d~~~~~~~~D~i~~~~vlh~  264 (359)
                      .++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++   .    +++.+..+|.     .||+|+++...  
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence            46789999999999999987775443 7999999 778877654   1    2333332221     59999876332  


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                         +....+++++.+.|+|   ||.+++......                            ..+++.+.+++.||++.+
T Consensus       190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~  235 (250)
T PRK00517        190 ---NPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE  235 (250)
T ss_pred             ---HHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence               3345789999999999   999988643210                            356778999999999998


Q ss_pred             EEecCCcceEEE
Q 043623          345 ITPLLGLRSFIE  356 (359)
Q Consensus       345 ~~~~~~~~~~i~  356 (359)
                      +.......+++.
T Consensus       236 ~~~~~~W~~~~~  247 (250)
T PRK00517        236 VLERGEWVALVG  247 (250)
T ss_pred             EEEeCCEEEEEE
Confidence            887776655544

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.15  E-value=8.5e-11  Score=102.44  Aligned_cols=98  Identities=18%  Similarity=0.218  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCC-CC-C--CC--CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDM-NQ-S--IP--SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~-~~-~--~~--~~D~i~~~~  260 (359)
                      +..+|||||||+|.++..+++.+|+.+++++|. +++++.+++      ..+++++.+|+ .. +  ++  .||+|++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            567999999999999999999999999999999 778776653      36799999998 43 3  43  499999875


Q ss_pred             hhccCC------hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          261 IFHDYD------DEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       261 vlh~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      ......      ......+|+++++.|+|   ||.+++..
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~  156 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT  156 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence            442111      11135789999999999   99998854

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.15  E-value=1.9e-10  Score=96.39  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             EEeec-hHHHhcCCC---------CCCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCc
Q 043623          222 SVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGRE  288 (359)
Q Consensus       222 ~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG  288 (359)
                      +++|. ++|++.|++         ..+|+++.+|+.+ |++  .||+|++..++|+++|.  .++|++++++|||   ||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence            47888 788877642         2479999999988 765  39999999999999875  4789999999999   99


Q ss_pred             eEEEEeeecCCCCCCchHHHHHHHhhhhhhh---hcC------------CcccCHHHHHHHHHhcCCceeeEEecC-Ccc
Q 043623          289 KVIIVDIVVNEKKDKPEITEAKLLYDALMMT---CVP------------GIERSEKEWERLFFDAGFTSYKITPLL-GLR  352 (359)
Q Consensus       289 ~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~  352 (359)
                      .++|.|...++......  ............   ..+            ....+.+++.++|+++||+.++..... +..
T Consensus        76 ~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~  153 (160)
T PLN02232         76 RVSILDFNKSNQSVTTF--MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM  153 (160)
T ss_pred             EEEEEECCCCChHHHHH--HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence            99999998655321110  000000000000   000            134589999999999999999888775 444


Q ss_pred             eEEEEE
Q 043623          353 SFIEVY  358 (359)
Q Consensus       353 ~~i~~~  358 (359)
                      .+..+.
T Consensus       154 ~~~~~~  159 (160)
T PLN02232        154 GNLVAM  159 (160)
T ss_pred             HeeEee
Confidence            455443

>PRK14968 putative methyltransferase; Provisional

Probab=99.15  E-value=1.3e-09  Score=93.59  Aligned_cols=124  Identities=17%  Similarity=0.264  Sum_probs=92.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-ceEEeCCCCCCCC--CccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDN-LKFIAGDMNQSIP--SADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~r-v~~~~~d~~~~~~--~~D~i~~~~v  261 (359)
                      .++.+|||+|||+|.++..+++.  +.+++++|. +++++.+++       .++ +.++.+|+.++++  .||+|+++..
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45679999999999999999987  578999999 777766642       222 8899999888544  4999998755


Q ss_pred             hccCC-------------------hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623          262 FHDYD-------------------DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP  322 (359)
Q Consensus       262 lh~~~-------------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (359)
                      ++...                   ......+++++.+.|+|   ||.+++.....                         
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~-------------------------  151 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL-------------------------  151 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence            43211                   12235689999999999   89887754210                         


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEecC
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                         ...+++.++++++||++..+....
T Consensus       152 ---~~~~~l~~~~~~~g~~~~~~~~~~  175 (188)
T PRK14968        152 ---TGEDEVLEYLEKLGFEAEVVAEEK  175 (188)
T ss_pred             ---CCHHHHHHHHHHCCCeeeeeeecc
Confidence               134667889999999988876553

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.14  E-value=1.4e-09  Score=102.96  Aligned_cols=134  Identities=13%  Similarity=0.215  Sum_probs=96.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC---CccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP---SADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~---~~D~i~~~~vl  262 (359)
                      ++..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ..+++++.+|+++ ..+   .||+|+++--.
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY  329 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY  329 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence            4457999999999999999999999999999999 888877664     4579999999976 332   49999996422


Q ss_pred             ccCCh-----------------------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623          263 HDYDD-----------------------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT  319 (359)
Q Consensus       263 h~~~d-----------------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
                      ..-.+                       +-..++++.+.+.|+|   ||.++ +|...  .                   
T Consensus       330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~--~-------------------  384 (423)
T PRK14966        330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGF--D-------------------  384 (423)
T ss_pred             CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECc--c-------------------
Confidence            11110                       1123677777788888   77654 33311  0                   


Q ss_pred             hcCCcccCHHHHHHHHHhcCCceeeEEec-CCcceEEEEE
Q 043623          320 CVPGIERSEKEWERLFFDAGFTSYKITPL-LGLRSFIEVY  358 (359)
Q Consensus       320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~  358 (359)
                             ..+++.+++++.||+.+++..- .+...++.++
T Consensus       385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~  417 (423)
T PRK14966        385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK  417 (423)
T ss_pred             -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence                   3567788999999998776554 5667777665

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=7.2e-10  Score=93.25  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=101.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----C--CCCce-EEeCCCCC-C-CC--CccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----E--TDNLK-FIAGDMNQ-S-IP--SADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~--~~rv~-~~~~d~~~-~-~~--~~D~i~~~~v  261 (359)
                      ....||+||||||..-...-. .|..++|++|. +.+-+.+.    +  ..++. |+.++..+ + .+  ++|.|++..+
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            345789999999987554322 37889999998 55654433    2  56676 88888877 4 34  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      |+...|+  ++.|+++++.|+|   ||+++++|....+....+.+  -....+-.......|-..|.+-| +.|+++-|+
T Consensus       155 LCSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f~  226 (252)
T KOG4300|consen  155 LCSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRDTG-ELLEDAEFS  226 (252)
T ss_pred             EeccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehhHH-HHhhhcccc
Confidence            9877664  6889999999999   99999999987665433211  01122221111234555666555 566778899


Q ss_pred             eeeEEecCC
Q 043623          342 SYKITPLLG  350 (359)
Q Consensus       342 ~~~~~~~~~  350 (359)
                      ..+....+.
T Consensus       227 ~~~~kr~~~  235 (252)
T KOG4300|consen  227 IDSCKRFNF  235 (252)
T ss_pred             cchhhcccC
Confidence            888877753

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.10  E-value=1e-09  Score=95.39  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             HHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-C
Q 043623          185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-P  251 (359)
Q Consensus       185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-~  251 (359)
                      +..+.  ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.+++       .++++++.+|+.+  + . +
T Consensus        33 l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         33 LSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             HHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence            34444  6678899999999999999998864 6679999999 777776543       3688999999876  2 2 3


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .||+|++...     ......+|+.+.+.|+|   ||++++
T Consensus       111 ~~D~V~~~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~  143 (198)
T PRK00377        111 KFDRIFIGGG-----SEKLKEIISASWEIIKK---GGRIVI  143 (198)
T ss_pred             CCCEEEECCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence            5999998542     22345789999999999   898876

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.10  E-value=2.1e-09  Score=98.66  Aligned_cols=131  Identities=13%  Similarity=0.243  Sum_probs=94.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEec------
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFK------  259 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~------  259 (359)
                      .+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++       .++++++.+|++++.+  .||+|+++      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 778776654       3569999999998654  49999986      


Q ss_pred             -------chhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623          260 -------LIFHDYDD----------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP  322 (359)
Q Consensus       260 -------~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (359)
                             .++++-+.          +...++++++.+.|+|   ||.++ +|....                        
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~g~~------------------------  247 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEIGNW------------------------  247 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEECcc------------------------
Confidence                   22322221          1355789999999999   77654 444210                        


Q ss_pred             CcccCHHHHHHHHH-hcCCceeeEEe-cCCcceEEEEE
Q 043623          323 GIERSEKEWERLFF-DAGFTSYKITP-LLGLRSFIEVY  358 (359)
Q Consensus       323 g~~~t~~e~~~ll~-~aGf~~~~~~~-~~~~~~~i~~~  358 (359)
                          ..+.+.+++. +.||..+++.. ..+...++.++
T Consensus       248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~  281 (284)
T TIGR00536       248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF  281 (284)
T ss_pred             ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence                1344566676 46887666654 35556666554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PHA03411 putative methyltransferase; Provisional

Probab=99.10  E-value=1.4e-09  Score=97.22  Aligned_cols=124  Identities=11%  Similarity=0.157  Sum_probs=91.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEecchhccCChhH
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDDEV  269 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d~~  269 (359)
                      ...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ .++++++.+|+.+ ..+ .||+|+++-.+++.+..+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence            357999999999999999999887789999999 788887765 5689999999998 323 599999988887754332


Q ss_pred             H------------------HHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          270 C------------------LKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       270 ~------------------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .                  .+.++.+...|+|   +|.++++   ..   ..+       +|..         ..+.+++
T Consensus       144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---ys---s~~-------~y~~---------sl~~~~y  198 (279)
T PHA03411        144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YS---GRP-------YYDG---------TMKSNKY  198 (279)
T ss_pred             hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Ee---ccc-------cccc---------cCCHHHH
Confidence            1                  3466777778888   7766655   11   110       1111         1278999


Q ss_pred             HHHHHhcCCce
Q 043623          332 ERLFFDAGFTS  342 (359)
Q Consensus       332 ~~ll~~aGf~~  342 (359)
                      +++|+++||..
T Consensus       199 ~~~l~~~g~~~  209 (279)
T PHA03411        199 LKWSKQTGLVT  209 (279)
T ss_pred             HHHHHhcCcEe
Confidence            99999999975

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.10  E-value=1.1e-09  Score=96.60  Aligned_cols=125  Identities=12%  Similarity=0.203  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C--C--CCccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S--I--PSADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~--~--~~~D~i~~  258 (359)
                      .+...+|||+|||+|..+..++++.++.+++++|+ +.+.+.|++       .+||+++..|+.+ .  .  ..||+|++
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            34578999999999999999999999999999999 667766654       7999999999987 1  2  24999999


Q ss_pred             cchhccCChh----------------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623          259 KLIFHDYDDE----------------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP  322 (359)
Q Consensus       259 ~~vlh~~~d~----------------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (359)
                      +=-.+..++.                ....+++.+.+.|||   ||++.++-..           +              
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~-----------e--------------  173 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP-----------E--------------  173 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH-----------H--------------
Confidence            8655444332                246788999999999   8999876431           1              


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEec
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                          ...||.+++.+.+|...++..+
T Consensus       174 ----rl~ei~~~l~~~~~~~k~i~~V  195 (248)
T COG4123         174 ----RLAEIIELLKSYNLEPKRIQFV  195 (248)
T ss_pred             ----HHHHHHHHHHhcCCCceEEEEe
Confidence                3677888899988888777666

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.09  E-value=5.8e-10  Score=97.42  Aligned_cols=97  Identities=15%  Similarity=0.149  Sum_probs=74.6

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC---
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP---  251 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~---  251 (359)
                      +++.+.  ..++.+|||||||+|..+..+++..+ ..+++++|. +++++.+++       .++++++.+|+.+..+   
T Consensus        64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            344443  45678999999999999999998764 568999999 777766553       3468999999987332   


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .||+|++...+++++        .++.+.|+|   ||++++.
T Consensus       142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~  172 (205)
T PRK13944        142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP  172 (205)
T ss_pred             CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence            599999998887655        346678999   9998774

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.09  E-value=1.8e-09  Score=94.53  Aligned_cols=105  Identities=12%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCCC---------CC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQS---------IP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~---------~~-  251 (359)
                      ++...+. .++++.+|||||||+|.++..+++.. +..+++++|+.++.    ...+|+++.+|+.++         .+ 
T Consensus        41 ~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         41 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             HHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence            3444443 24667899999999999999999986 45799999995532    235699999999872         32 


Q ss_pred             -CccEEEecchhccCChhH---------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 -SADAFLFKLIFHDYDDEV---------CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                       .||+|++..++|...++.         ...+|+.+.+.|+|   ||.+++..+
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~  166 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF  166 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence             499999987766544321         24689999999999   999988654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.09  E-value=9.3e-10  Score=92.16  Aligned_cols=100  Identities=22%  Similarity=0.268  Sum_probs=81.9

Q ss_pred             HHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCCCcc
Q 043623          185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIPSAD  254 (359)
Q Consensus       185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~~~D  254 (359)
                      +.++.  ..++.+++|||||||..+++++...|..+++++|. +++++..+.      .++++++.+|.-+   ..+.+|
T Consensus        27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence            45554  67889999999999999999999999999999998 666655442      7999999999877   344699


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +|++...-      ....+|..+...|+|   ||+|++.-.
T Consensus       105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~nai  136 (187)
T COG2242         105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANAI  136 (187)
T ss_pred             EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence            99999862      134789999999999   898887543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.08  E-value=3.1e-09  Score=94.53  Aligned_cols=155  Identities=15%  Similarity=0.174  Sum_probs=112.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC------CCCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS------IPSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~------~~~~D~i  256 (359)
                      ..+.+||||.||+|.+....+..+|.  .++...|. |..++..++       .+-++|..+|.|+.      .|..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            35689999999999999999999997  68999998 666655443       45569999999982      2358999


Q ss_pred             EecchhccCChhHHH-HHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC-----cccCHHH
Q 043623          257 LFKLIFHDYDDEVCL-KLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG-----IERSEKE  330 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~-~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~t~~e  330 (359)
                      +.+..+..++|++.+ ..|+.+.+++.|   ||.++....-+.....     .    ....+..+-+|     +.|+..|
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle-----~----IAr~LtsHr~g~~WvMRrRsq~E  281 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE-----M----IARVLTSHRDGKAWVMRRRSQAE  281 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH-----H----HHHHHhcccCCCceEEEecCHHH
Confidence            999999999998755 479999999999   8887765432222211     0    11111111122     4679999


Q ss_pred             HHHHHHhcCCceeeEEec-CCcceEEEEEC
Q 043623          331 WERLFFDAGFTSYKITPL-LGLRSFIEVYL  359 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~  359 (359)
                      +.+++++|||+-++..-- -|..+|..|+|
T Consensus       282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence            999999999996554433 35677776654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.05  E-value=7.4e-10  Score=101.13  Aligned_cols=90  Identities=18%  Similarity=0.261  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCC---CeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccC
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPS---IKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDY  265 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~  265 (359)
                      ...+|||||||+|.++..+++..|.   .+++++|+ +.+++.+++ .+++.+..+|..+ |++  .||+|+.....   
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~---  161 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP---  161 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence            4578999999999999999998774   36899999 788887765 5789999999888 765  49999976431   


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                            ..+++++++|+|   ||+++++.+
T Consensus       162 ------~~~~e~~rvLkp---gG~li~~~p  182 (272)
T PRK11088        162 ------CKAEELARVVKP---GGIVITVTP  182 (272)
T ss_pred             ------CCHHHHHhhccC---CCEEEEEeC
Confidence                  236788999999   999998754

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.04  E-value=1.4e-09  Score=95.41  Aligned_cols=98  Identities=20%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~  251 (359)
                      .++..++  ..++.+|||||||+|.++..+++.. ++.+++++|. +++++.+++      ..+|+++.+|..+.+   .
T Consensus        67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            4455555  6678999999999999999998875 4579999999 778776654      357999999998732   2


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .||+|++....++.+        +.+.+.|+|   ||++++.
T Consensus       145 ~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~  175 (212)
T PRK13942        145 PYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP  175 (212)
T ss_pred             CcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence            499999987765433        345667999   9998874

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.04  E-value=5.8e-10  Score=96.59  Aligned_cols=97  Identities=16%  Similarity=0.258  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C---CC--CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S---IP--SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~---~~--~~D~i~~~~  260 (359)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.++.      ..+|+++.+|+.+ +   ++  .+|.|++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            446999999999999999999999999999999 777766543      3589999999975 2   33  388888765


Q ss_pred             hhccCChhH-------HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          261 IFHDYDDEV-------CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       261 vlh~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      .. .|+...       ...+++.+.++|+|   ||.+++..
T Consensus        96 pd-pw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t  132 (194)
T TIGR00091        96 PD-PWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT  132 (194)
T ss_pred             CC-cCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence            43 232211       13689999999999   99987754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.04  E-value=1.4e-09  Score=95.49  Aligned_cols=132  Identities=14%  Similarity=0.188  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCC-CCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQ-SIP  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~-~~~  251 (359)
                      ..+..+||+.|||.|.-+..|+++  +.+|+|+|+ +.+++.+.                  ...+|++.++|+|+ +..
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            456679999999999999999997  568999999 66776541                  04678999999999 322


Q ss_pred             ---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC-CchHHHHHHHhhhhhhhhcCCcccC
Q 043623          252 ---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD-KPEITEAKLLYDALMMTCVPGIERS  327 (359)
Q Consensus       252 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t  327 (359)
                         .||+|+=..+|+-++++...++.+.+.+.|+|   ||+++++-...+.... .+|+                  ..+
T Consensus       113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~  171 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT  171 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred             hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence               49999999999999999999999999999999   8995554444332211 1211                  127


Q ss_pred             HHHHHHHHHhcCCceeeEEe
Q 043623          328 EKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~  347 (359)
                      .+++.++|. .+|++.....
T Consensus       172 ~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  172 EEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             HHHHHHHHT-TTEEEEEEEE
T ss_pred             HHHHHHHhc-CCcEEEEEec
Confidence            899999999 7888776653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.03  E-value=1.3e-09  Score=99.85  Aligned_cols=96  Identities=16%  Similarity=0.377  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEecch--
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFKLI--  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~~v--  261 (359)
                      ++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++       .++|+++.+|++++.+  .||+|+++--  
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            457999999999999999999999999999999 778777654       3679999999987544  4999998611  


Q ss_pred             -----------hccCCh----------hHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          262 -----------FHDYDD----------EVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       262 -----------lh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                                 +++.+.          +....+++.+.+.|+|   ||++++
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~  249 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV  249 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence                       111111          1235789999999999   887664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.02  E-value=5.1e-09  Score=96.90  Aligned_cols=94  Identities=15%  Similarity=0.366  Sum_probs=74.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEecc-----
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFKL-----  260 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~~-----  260 (359)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++       .++|+++.+|+++..+  .||+|+++-     
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 788877654       3579999999987444  499999861     


Q ss_pred             --------hhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          261 --------IFHDYDD----------EVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       261 --------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                              .+++.+.          +....+++++.+.|+|   ||++++
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~  261 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV  261 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence                    1121111          2235789999999999   887765

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.00  E-value=2.3e-09  Score=94.37  Aligned_cols=98  Identities=15%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~  251 (359)
                      .++..+.  ..++.+|||||||+|.++..+++..+ +.+++++|. +++++.+++      .++++++.+|..+..   .
T Consensus        68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            3444444  56788999999999999999999864 567999998 778777653      367999999998732   2


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .||+|++.....+.        .+.+.+.|+|   ||++++.
T Consensus       146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP  176 (215)
T ss_pred             CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence            59999988765433        3456778999   9998874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.99  E-value=7.2e-09  Score=102.30  Aligned_cols=131  Identities=18%  Similarity=0.308  Sum_probs=94.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEecchh-
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFKLIF-  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~~vl-  262 (359)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++       .++++++.+|+++..+  .||+|+++--. 
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence            346899999999999999999999999999999 778777654       4589999999887443  49999984211 


Q ss_pred             -------------ccCC------h----hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623          263 -------------HDYD------D----EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT  319 (359)
Q Consensus       263 -------------h~~~------d----~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
                                   .+.+      .    +...++++.+.+.|+|   ||.+++ |..  ..                   
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig--~~-------------------  272 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIG--FK-------------------  272 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EEC--Cc-------------------
Confidence                         1111      0    1234578889999999   887765 421  00                   


Q ss_pred             hcCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEE
Q 043623          320 CVPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIE  356 (359)
Q Consensus       320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~  356 (359)
                             ..+.+.+++++.||+.+++.. ..+...++.
T Consensus       273 -------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~  303 (506)
T PRK01544        273 -------QEEAVTQIFLDHGYNIESVYKDLQGHSRVIL  303 (506)
T ss_pred             -------hHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence                   355678888889998777655 345555444

>PRK14967 putative methyltransferase; Provisional

Probab=98.98  E-value=1.2e-08  Score=90.36  Aligned_cols=102  Identities=11%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--CccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--SADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~~D~i~~~~vlh  263 (359)
                      ..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++     ..+++++.+|+.+..+  .||+|+++--.+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            455689999999999999998876 3348999999 677765543     3358889999887433  599999874322


Q ss_pred             cCCh-------------------hHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          264 DYDD-------------------EVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       264 ~~~d-------------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      .-+.                   .....+++++.+.|+|   ||+++++....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~  162 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL  162 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence            1111                   1134688999999999   99998865543

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.98  E-value=3.8e-09  Score=91.68  Aligned_cols=101  Identities=16%  Similarity=0.277  Sum_probs=77.2

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CC-CC
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SI-PS  252 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~-~~  252 (359)
                      ++..++  ..++.+|||+|||+|.++..+++..|+.+++++|. +++++.+++      .++++++.+|+.+   .. +.
T Consensus        32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            444444  56678999999999999999998888899999999 778776653      3579999998865   22 23


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +|.+++..     . .....+++++.+.|+|   ||++++...
T Consensus       110 ~d~v~~~~-----~-~~~~~~l~~~~~~Lkp---gG~li~~~~  143 (196)
T PRK07402        110 PDRVCIEG-----G-RPIKEILQAVWQYLKP---GGRLVATAS  143 (196)
T ss_pred             CCEEEEEC-----C-cCHHHHHHHHHHhcCC---CeEEEEEee
Confidence            67765532     1 2245789999999999   899888764

>PRK04457 spermidine synthase; Provisional

Probab=98.97  E-value=1.9e-09  Score=97.64  Aligned_cols=97  Identities=24%  Similarity=0.407  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC-CccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP-SADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~-~~D~i~~~~  260 (359)
                      +++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++       .+|++++.+|..+   ..+ .||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            4568999999999999999999999999999999 888877653       4789999999865   233 499998753


Q ss_pred             hhcc--CChh-HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          261 IFHD--YDDE-VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       261 vlh~--~~d~-~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       ++.  .+.. ....+++++++.|+|   ||.+++.
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin  176 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN  176 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence             221  1211 125899999999999   8888774

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.96  E-value=9.1e-09  Score=94.63  Aligned_cols=94  Identities=18%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-CCCccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-IPSADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~~~~D~i~~~~vlh  263 (359)
                      .++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++       .+++.+...+.... ...||+|+++... 
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-  235 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-  235 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence            35689999999999999988875 4458999999 777776654       34566666664332 2359999986543 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                          +....++.++.+.|+|   ||.+++...
T Consensus       236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi  260 (288)
T TIGR00406       236 ----EVIKELYPQFSRLVKP---GGWLILSGI  260 (288)
T ss_pred             ----HHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence                2345789999999999   999888654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.94  E-value=4.4e-09  Score=99.02  Aligned_cols=106  Identities=15%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~-  251 (359)
                      .+++.+.  ......+||||||+|.++..+++++|+..++|+|+ +.+++.+..      ..+|.++.+|+..   .++ 
T Consensus       113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~  190 (390)
T PRK14121        113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS  190 (390)
T ss_pred             HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence            4455444  33456899999999999999999999999999999 666655532      4689999999853   344 


Q ss_pred             -CccEEEecchhccCChhH-----HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          252 -SADAFLFKLIFHDYDDEV-----CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~-----~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                       .+|.|++.... .|+...     ...+|+.++++|+|   ||.+.+..
T Consensus       191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~T  235 (390)
T PRK14121        191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRT  235 (390)
T ss_pred             CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEE
Confidence             49999876432 343221     14789999999999   99988754

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.92  E-value=2.3e-09  Score=84.76  Aligned_cols=95  Identities=13%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C--CC--CccEEEecchh
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S--IP--SADAFLFKLIF  262 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~--~~--~~D~i~~~~vl  262 (359)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++.       .++++++.+|+.+ .  .+  .||+|+++--.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            589999999999999999998 789999999 777665543       5789999999987 3  33  49999998776


Q ss_pred             ccCC------hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          263 HDYD------DEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       263 h~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +...      .+....+++++.+.|+|   ||.++++-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence            5432      12346889999999999   89887753

...

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=2.1e-08  Score=90.84  Aligned_cols=127  Identities=13%  Similarity=0.228  Sum_probs=90.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCce----EEeCCCCC-CC-CCccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLK----FIAGDMNQ-SI-PSADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~----~~~~d~~~-~~-~~~D~i~~~~v  261 (359)
                      ..++.+|||+|||+|.+++..++.... +++++|+ |.+++.+++   .+.|.    ....+..+ +. ..||+|+++= 
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-  237 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-  237 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence            457899999999999999999997553 7999999 777777664   33444    22233333 23 2599998763 


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      |   . +-.+++...+.+.++|   ||++++.--. .+                           ..+...+.++++||.
T Consensus       238 L---A-~vl~~La~~~~~~lkp---gg~lIlSGIl-~~---------------------------q~~~V~~a~~~~gf~  282 (300)
T COG2264         238 L---A-EVLVELAPDIKRLLKP---GGRLILSGIL-ED---------------------------QAESVAEAYEQAGFE  282 (300)
T ss_pred             h---H-HHHHHHHHHHHHHcCC---CceEEEEeeh-Hh---------------------------HHHHHHHHHHhCCCe
Confidence            3   2 2356889999999999   8888775421 11                           255668888899999


Q ss_pred             eeeEEecCCcceEE
Q 043623          342 SYKITPLLGLRSFI  355 (359)
Q Consensus       342 ~~~~~~~~~~~~~i  355 (359)
                      ++++.......+++
T Consensus       283 v~~~~~~~eW~~i~  296 (300)
T COG2264         283 VVEVLEREEWVAIV  296 (300)
T ss_pred             EeEEEecCCEEEEE
Confidence            99988876554443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.91  E-value=7.3e-09  Score=78.85  Aligned_cols=92  Identities=18%  Similarity=0.339  Sum_probs=74.6

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCceEEeCCCCCCC----CCccEEEecchhccC
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------ETDNLKFIAGDMNQSI----PSADAFLFKLIFHDY  265 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------~~~rv~~~~~d~~~~~----~~~D~i~~~~vlh~~  265 (359)
                      +|+|+|||+|.++..+++ .+..+++++|. +..+..++      ...+++++.+|+.+..    +.+|++++..+++++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999998 67789999998 55554443      2577899999998832    249999999999875


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       .+....+++.+.+.|+|   ||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~---~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKP---GGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence             44567899999999999   8888765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.90  E-value=4.8e-09  Score=86.57  Aligned_cols=122  Identities=12%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-C-C-CccEEEecchhcc
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-I-P-SADAFLFKLIFHD  264 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~-~-~~D~i~~~~vlh~  264 (359)
                      .+|||+|||+|.++..|++..-..+.+++|. +.+++.|+.       .+.|+|...|+.+| + + .||+|+-...+.-
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            3999999999999999999765556889998 667665542       55699999999994 2 2 4999987766543


Q ss_pred             C------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          265 Y------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       265 ~------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                      +      ++.....++..+.+.|+|   ||.++|....                             +|.+|+.+.++.-
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~~~  196 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFENF  196 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHhcC
Confidence            2      222234578889999999   8988886553                             1788999999999


Q ss_pred             CCceeeEEecC
Q 043623          339 GFTSYKITPLL  349 (359)
Q Consensus       339 Gf~~~~~~~~~  349 (359)
                      ||.....+|.|
T Consensus       197 ~f~~~~tvp~p  207 (227)
T KOG1271|consen  197 NFEYLSTVPTP  207 (227)
T ss_pred             CeEEEEeeccc
Confidence            99988888775

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.89  E-value=1.2e-08  Score=93.14  Aligned_cols=127  Identities=16%  Similarity=0.179  Sum_probs=88.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~vl  262 (359)
                      ..++.+|||||||||-+++..++.... +++++|+ |.+++.+++       .+++.+.  ...+ ....||+|+.+=.-
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~  235 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILA  235 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-H
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCH
Confidence            356689999999999999999987553 7999999 777776664       4566543  1122 22359999876332


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                           +....++..+.+.|+|   ||.+++.-... +                           ..+++.+.+++ ||++
T Consensus       236 -----~vL~~l~~~~~~~l~~---~G~lIlSGIl~-~---------------------------~~~~v~~a~~~-g~~~  278 (295)
T PF06325_consen  236 -----DVLLELAPDIASLLKP---GGYLILSGILE-E---------------------------QEDEVIEAYKQ-GFEL  278 (295)
T ss_dssp             -----HHHHHHHHHCHHHEEE---EEEEEEEEEEG-G---------------------------GHHHHHHHHHT-TEEE
T ss_pred             -----HHHHHHHHHHHHhhCC---CCEEEEccccH-H---------------------------HHHHHHHHHHC-CCEE
Confidence                 4456788899999999   78777754432 1                           25566778877 9999


Q ss_pred             eeEEecCCcceEEEEE
Q 043623          343 YKITPLLGLRSFIEVY  358 (359)
Q Consensus       343 ~~~~~~~~~~~~i~~~  358 (359)
                      .+.....+..+++.-+
T Consensus       279 ~~~~~~~~W~~l~~~K  294 (295)
T PF06325_consen  279 VEEREEGEWVALVFKK  294 (295)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEEEECCEEEEEEEe
Confidence            8888777665555443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.89  E-value=2.4e-08  Score=85.98  Aligned_cols=95  Identities=14%  Similarity=0.305  Sum_probs=71.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-C--------CC--CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S--------IP--SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~--------~~--~~D~i~~~  259 (359)
                      ..++.+|||+|||+|.++..+++.+ +..+++++|+.+..    ...+++++.+|+.+ +        .+  .||+|++.
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~  105 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD  105 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence            4678899999999999999999887 56789999995432    24678899899876 2        23  49999986


Q ss_pred             chhc---cCC------hhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          260 LIFH---DYD------DEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       260 ~vlh---~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ...|   .|.      .+...++|+.+.+.|+|   ||++++.
T Consensus       106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~  145 (188)
T TIGR00438       106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK  145 (188)
T ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence            4332   111      11235789999999999   8998875

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=5.2e-08  Score=88.94  Aligned_cols=129  Identities=18%  Similarity=0.291  Sum_probs=91.5

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-CccEEEecc--hhcc--
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SADAFLFKL--IFHD--  264 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~D~i~~~~--vlh~--  264 (359)
                      +|||+|||||..++.++++.|++++++.|+ +.+++.|++      ..++.++.+|.+++.+ .||+|+++=  +-..  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            899999999999999999999999999999 888877654      2566777779898665 599999873  2221  


Q ss_pred             -CC------------------hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcc
Q 043623          265 -YD------------------DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIE  325 (359)
Q Consensus       265 -~~------------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  325 (359)
                       ..                  -+...+++..+.+.|+|   || +++++....                           
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g-~l~le~g~~---------------------------  241 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GG-VLILEIGLT---------------------------  241 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---Cc-EEEEEECCC---------------------------
Confidence             00                  12345677888888888   45 444444211                           


Q ss_pred             cCHHHHHHHHHhcC-CceeeEEec-CCcceEEEE
Q 043623          326 RSEKEWERLFFDAG-FTSYKITPL-LGLRSFIEV  357 (359)
Q Consensus       326 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~~i~~  357 (359)
                       ..+.+.++|.+.| |..+++..- .+...++.+
T Consensus       242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~  274 (280)
T COG2890         242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA  274 (280)
T ss_pred             -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence             3667789999999 666666554 344444444

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.86  E-value=7.7e-08  Score=81.99  Aligned_cols=156  Identities=13%  Similarity=0.201  Sum_probs=94.3

Q ss_pred             hHhhhhChHHHHHHHHHhhcC-ccch----HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHh
Q 043623          157 WGYAEQNHEFNNLFNQGLASD-SQMA----KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIA  231 (359)
Q Consensus       157 ~~~~~~~~~~~~~f~~~~~~~-~~~~----~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~  231 (359)
                      ++.+.++|+....|+++++.. ..+.    ..+++.+. ..++...|.|+|||.+.++..+..   ..++.-+|+-..  
T Consensus        31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--  104 (219)
T PF05148_consen   31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--  104 (219)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence            445567777777777766642 2232    55666554 134557999999999999976542   347888887221  


Q ss_pred             cCCCCCCceEEeCCCCC-CCCC--ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH
Q 043623          232 DLPETDNLKFIAGDMNQ-SIPS--ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE  308 (359)
Q Consensus       232 ~a~~~~rv~~~~~d~~~-~~~~--~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~  308 (359)
                          .+  .+++.|+.. |.++  .|+++++-.|-.-+   ...+|+++.|.|||   ||.+.|.|..-.          
T Consensus       105 ----n~--~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~---~G~L~IAEV~SR----------  162 (219)
T PF05148_consen  105 ----NP--RVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP---GGILKIAEVKSR----------  162 (219)
T ss_dssp             ----ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG----------
T ss_pred             ----CC--CEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc---CcEEEEEEeccc----------
Confidence                12  467799977 8774  99999998884322   35789999999999   999999987411          


Q ss_pred             HHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEE
Q 043623          309 AKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIE  356 (359)
Q Consensus       309 ~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~  356 (359)
                                      .-+.+++.+.++..||+....-.......+.+
T Consensus       163 ----------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~  194 (219)
T PF05148_consen  163 ----------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFE  194 (219)
T ss_dssp             -----------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEE
T ss_pred             ----------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEE
Confidence                            01567788899999999877543333334443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.86  E-value=4.7e-08  Score=88.00  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCCCC-----CCccEEEecchhc--
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQSI-----PSADAFLFKLIFH--  263 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~~~-----~~~D~i~~~~vlh--  263 (359)
                      ..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++   ..+++++.+|+++..     +.||+|+++--..  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            45899999999999999999999999999999 788877764   234688999988732     2499999874221  


Q ss_pred             ----cCChh------------------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc
Q 043623          264 ----DYDDE------------------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV  321 (359)
Q Consensus       264 ----~~~d~------------------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (359)
                          ..+++                  ...++++.+.+.|+|   ||++++. ... +                      
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~-~~~-~----------------------  219 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE-TSE-R----------------------  219 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE-ECc-c----------------------
Confidence                11111                  124788888999999   8887754 210 0                      


Q ss_pred             CCcccCHHHHHHHHHhcCCceeeEE
Q 043623          322 PGIERSEKEWERLFFDAGFTSYKIT  346 (359)
Q Consensus       322 ~g~~~t~~e~~~ll~~aGf~~~~~~  346 (359)
                           ..+++.+++++.||+..-..
T Consensus       220 -----~~~~v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       220 -----QAPLAVEAFARAGLIARVAS  239 (251)
T ss_pred             -----hHHHHHHHHHHCCCCceeeE
Confidence                 24456778888998854443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.84  E-value=1.4e-08  Score=87.64  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=95.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------------
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------------------  235 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------------------  235 (359)
                      +..++.++..+-.+..+|||||.+|.++..+++.+-...+.|+|+ +..|..|++                         
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG  125 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence            344554443355678999999999999999999998889999999 566666552                         


Q ss_pred             ----------------CCCceE-------EeCCCCC-CCCCccEEEecchh---c-cCChhHHHHHHHHHHHhcCCCCCC
Q 043623          236 ----------------TDNLKF-------IAGDMNQ-SIPSADAFLFKLIF---H-DYDDEVCLKLLKNCREAVASSDGR  287 (359)
Q Consensus       236 ----------------~~rv~~-------~~~d~~~-~~~~~D~i~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~g  287 (359)
                                      .+++.|       ..-||.+ ..+.||+|++-.+-   | +|.|+-..++|+++++.|.|   |
T Consensus       126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g  202 (288)
T KOG2899|consen  126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G  202 (288)
T ss_pred             cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence                            012222       2233443 34469999776542   3 58899999999999999999   6


Q ss_pred             ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc--CCceee
Q 043623          288 EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA--GFTSYK  344 (359)
Q Consensus       288 G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a--Gf~~~~  344 (359)
                      | ++|+|+-    +... +...+.... ......--....++....++.+.  ||+.++
T Consensus       203 G-iLvvEPQ----pWks-Y~kaar~~e-~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  203 G-ILVVEPQ----PWKS-YKKAARRSE-KLAANYFKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             c-EEEEcCC----chHH-HHHHHHHHH-HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence            6 5555542    2111 111110000 00000112234788899999887  555443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.84  E-value=2.7e-08  Score=93.35  Aligned_cols=120  Identities=16%  Similarity=0.083  Sum_probs=87.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      .+++.+|||+|||+|.++.+.+..  +.+++++|+ +.+++.++.      ..++.+..+|+.+ +.+  .||+|++.--
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            567789999999999999887664  578999999 777775543      2348899999998 653  4999999632


Q ss_pred             hcc-------CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623          262 FHD-------YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL  334 (359)
Q Consensus       262 lh~-------~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l  334 (359)
                      ...       ...+...++|+.+++.|+|   ||++++.-+.                               ..+|.++
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~  303 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL  303 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence            211       1112246899999999999   9998876431                               1234567


Q ss_pred             HHhcCCceeeEEec
Q 043623          335 FFDAGFTSYKITPL  348 (359)
Q Consensus       335 l~~aGf~~~~~~~~  348 (359)
                      ++++|| +......
T Consensus       304 ~~~~g~-i~~~~~~  316 (329)
T TIGR01177       304 AEDAFR-VVKRFEV  316 (329)
T ss_pred             HhhcCc-chheeee
Confidence            888999 7776664

This family is found exclusively in the Archaea.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.80  E-value=3.5e-08  Score=86.71  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---CCccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---PSADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~~~D~i~~~~v  261 (359)
                      ..+..+|||||||+|.++..+++...  +++++|. +++++.+++      ..+++++.+|..+.+   ..||+|++...
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~  153 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA  153 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence            56778999999999999988877653  7999998 777766553      346999999987743   24999999876


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      ++++        .+.+.+.|+|   ||++++.-
T Consensus       154 ~~~~--------~~~l~~~L~~---gG~lv~~~  175 (212)
T PRK00312        154 APEI--------PRALLEQLKE---GGILVAPV  175 (212)
T ss_pred             chhh--------hHHHHHhcCC---CcEEEEEE
Confidence            6544        3456788999   89888753

>PRK01581 speE spermidine synthase; Validated

Probab=98.79  E-value=8.1e-08  Score=89.36  Aligned_cols=98  Identities=11%  Similarity=0.104  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCC---CCC-Ccc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQ---SIP-SAD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~---~~~-~~D  254 (359)
                      ..+.+||+||||+|..+..+++..+..+++++|+ +++++.|+.             .+|++++.+|..+   ..+ .||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            4568999999999999999998656679999999 778876662             5799999999886   222 499


Q ss_pred             EEEecchhc---cCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          255 AFLFKLIFH---DYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       255 ~i~~~~vlh---~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +|++...-.   .....-...+++.+++.|+|   ||.+++.
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q  267 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ  267 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            999873210   01112235689999999999   8877665

>PRK00811 spermidine synthase; Provisional

Probab=98.78  E-value=2.5e-08  Score=91.35  Aligned_cols=97  Identities=16%  Similarity=0.224  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC--C--CCCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ--S--IPSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~--~--~~~~D~i  256 (359)
                      +.+.+||+||||+|..+..+++..+..+++++|+ +.+++.+++           .+|++++.+|..+  .  ...||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4578999999999999999998655568999999 778776653           4689999999876  2  2249999


Q ss_pred             EecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEE
Q 043623          257 LFKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       257 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      ++...-+.-+...  ...+++.+++.|+|   ||.+++
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~  189 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA  189 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence            9865433222211  25789999999999   887765

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.74  E-value=4.6e-09  Score=69.15  Aligned_cols=49  Identities=55%  Similarity=0.888  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCcccccccCC-CCCCHHHHHhhcC-CCCCCcchHHHHHHHHh
Q 043623           30 IFLKCAVELGIPDIIHKRG-RPVTLPELVSALE-FQPNKRNCLRRIMRLLD   78 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~-~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~   78 (359)
                      ++|++|++|||||.|.++| +|.|.+||++++. .+|.++..++|+||.|+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            4799999999999998876 8999999999999 77767889999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.71  E-value=5.8e-08  Score=90.11  Aligned_cols=97  Identities=18%  Similarity=0.250  Sum_probs=72.6

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---CC
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---PS  252 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~~  252 (359)
                      +++.++  .+++.+|||||||+|.++..+++..+. .+++++|. +++++.+++      .+++.++.+|..+..   ..
T Consensus        72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            344444  566789999999999999999998764 47999998 777766543      467999999987632   35


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||+|++...+++.+        ..+.+.|+|   ||++++.
T Consensus       150 fD~Ii~~~g~~~ip--------~~~~~~Lkp---gG~Lvv~  179 (322)
T PRK13943        150 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVP  179 (322)
T ss_pred             ccEEEECCchHHhH--------HHHHHhcCC---CCEEEEE
Confidence            99999986654432        335678999   8998874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.69  E-value=3.9e-08  Score=84.26  Aligned_cols=144  Identities=13%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC---CCceE-EeCCCCC--CCCCccE
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPET---DNLKF-IAGDMNQ--SIPSADA  255 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~---~rv~~-~~~d~~~--~~~~~D~  255 (359)
                      +.+...+  ..+..++||+|||||..+..+...-.  +.+++|+ ..|++.+.+.   +.... -..+|..  ....||+
T Consensus       116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL  191 (287)
T COG4976         116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL  191 (287)
T ss_pred             HHHHhcc--CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence            3344444  34578999999999999888766532  5789999 6799888752   11111 1112443  2224999


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF  335 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll  335 (359)
                      |....||-++.+-+  .++..+...|+|   ||.+...-...++..... ......+            ..+..-+.+++
T Consensus       192 i~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f~-l~ps~Ry------------AH~~~YVr~~l  253 (287)
T COG4976         192 IVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGFV-LGPSQRY------------AHSESYVRALL  253 (287)
T ss_pred             hhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCee-cchhhhh------------ccchHHHHHHH
Confidence            99999998888754  679999999999   887766544444332211 0000000            01456678999


Q ss_pred             HhcCCceeeEEec
Q 043623          336 FDAGFTSYKITPL  348 (359)
Q Consensus       336 ~~aGf~~~~~~~~  348 (359)
                      +..||.++++.++
T Consensus       254 ~~~Gl~~i~~~~t  266 (287)
T COG4976         254 AASGLEVIAIEDT  266 (287)
T ss_pred             HhcCceEEEeecc
Confidence            9999999999765

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.69  E-value=6.3e-08  Score=81.95  Aligned_cols=88  Identities=23%  Similarity=0.438  Sum_probs=63.7

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC--cc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS--AD  254 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~--~D  254 (359)
                      .+++.++  ..++.+|||||||+|.++..++++  ..+++++|. +.+++.+++    .++++++.+|+.+ +.++  +|
T Consensus         4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence            4555555  566789999999999999999997  468999999 667666543    4689999999998 5553  88


Q ss_pred             EEEecchhccCChhHHHHHHH
Q 043623          255 AFLFKLIFHDYDDEVCLKLLK  275 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~  275 (359)
                      .|+++ ..++...+...++++
T Consensus        80 ~vi~n-~Py~~~~~~i~~~l~   99 (169)
T smart00650       80 KVVGN-LPYNISTPILFKLLE   99 (169)
T ss_pred             EEEEC-CCcccHHHHHHHHHh
Confidence            88765 444444443333433

>PRK03612 spermidine synthase; Provisional

Probab=98.67  E-value=1.3e-07  Score=93.85  Aligned_cols=97  Identities=12%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCC---CCC-Cc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQ---SIP-SA  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~---~~~-~~  253 (359)
                      +++++|||||||+|..+.++++. |. .+++++|+ +++++.+++             .+|++++.+|..+   ..+ .|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            45789999999999999999974 55 69999999 788887654             3689999999876   223 59


Q ss_pred             cEEEecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          254 DAFLFKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       254 D~i~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      |+|++...-...+..   -..++++.+++.|+|   ||.+++.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~  414 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ  414 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence            999997432211111   123689999999999   8887764

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=5.1e-08  Score=84.03  Aligned_cols=98  Identities=11%  Similarity=0.245  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCCchH--HHH--HHHHH----CC-CCeEEEeec-hHHHhcCCC----------------------------
Q 043623          194 GLSSLVEVGGGTGS--FAR--IISEA----FP-SIKCSVLEL-PHVIADLPE----------------------------  235 (359)
Q Consensus       194 ~~~~vlDvG~G~G~--~~~--~l~~~----~p-~~~~~~~D~-~~~i~~a~~----------------------------  235 (359)
                      +..+|.-+||+||.  ++.  .+.+.    .+ +.++++.|+ +.+++.|++                            
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56799999999994  333  33331    12 468999999 677776652                            


Q ss_pred             ------CCCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          236 ------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       236 ------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                            ..+|+|...|..+ +.+  .||+|+|.+||-+++++...+++++++++|+|   ||.|++-.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEec
Confidence                  3679999999998 322  49999999999999999999999999999999   88888743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=2.1e-07  Score=81.56  Aligned_cols=104  Identities=18%  Similarity=0.303  Sum_probs=84.4

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-CC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISE-AFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-IP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~~-  251 (359)
                      .|+....  +.++.+|+|.|.|+|.++..|+. ..|..+++.+|. ++..+.|++       .++|++..+|+.+. .+ 
T Consensus        85 ~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          85 YIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            4566665  88999999999999999999997 568789999998 666665553       67799999999983 33 


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      .||++++-     ++++.  .+|.+++++|+|   ||.+++.-++.+
T Consensus       163 ~vDav~LD-----mp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve  199 (256)
T COG2519         163 DVDAVFLD-----LPDPW--NVLEHVSDALKP---GGVVVVYSPTVE  199 (256)
T ss_pred             ccCEEEEc-----CCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence            59999874     67664  779999999999   999999877643

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.67  E-value=7.4e-07  Score=77.80  Aligned_cols=156  Identities=17%  Similarity=0.218  Sum_probs=105.1

Q ss_pred             hHhhhhChHHHHHHHHHhhcC-ccch----HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHh
Q 043623          157 WGYAEQNHEFNNLFNQGLASD-SQMA----KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIA  231 (359)
Q Consensus       157 ~~~~~~~~~~~~~f~~~~~~~-~~~~----~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~  231 (359)
                      +..+..+|+....|+++++.. ..+.    ..|++.+. ..+....|.|+|||.+.++..     -.-++.-+|+-.   
T Consensus       139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a---  209 (325)
T KOG3045|consen  139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA---  209 (325)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec---
Confidence            445567777777777776642 2222    56666655 134567899999999998872     122678888632   


Q ss_pred             cCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH
Q 043623          232 DLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE  308 (359)
Q Consensus       232 ~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~  308 (359)
                           .+-+++..||.+ |.+  +.|+++++-.|---+   ...+++++++.|+|   ||.++|.|..-    ..     
T Consensus       210 -----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~---gG~l~IAEv~S----Rf-----  269 (325)
T KOG3045|consen  210 -----VNERVIACDMRNVPLEDESVDVAVFCLSLMGTN---LADFIKEANRILKP---GGLLYIAEVKS----RF-----  269 (325)
T ss_pred             -----CCCceeeccccCCcCccCcccEEEeeHhhhccc---HHHHHHHHHHHhcc---CceEEEEehhh----hc-----
Confidence                 233457789988 766  399999887773322   45789999999999   99999988631    11     


Q ss_pred             HHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623          309 AKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY  358 (359)
Q Consensus       309 ~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~  358 (359)
                                       -+...+.+.|...||.+..+.-...+..+.+.+
T Consensus       270 -----------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk  302 (325)
T KOG3045|consen  270 -----------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK  302 (325)
T ss_pred             -----------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence                             145557888999999876665444444555443

>PLN02366 spermidine synthase

Probab=98.66  E-value=1.1e-07  Score=87.89  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CC--CCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SI--PSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~--~~~D~i  256 (359)
                      +++++||+||||.|..+..+++..+-.+++.+|+ +.+++.+++          .+|++++.+|..+   ..  ..||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            5678999999999999999987633458999999 667776653          4699999999754   23  249999


Q ss_pred             EecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          257 LFKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       257 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ++-..-+.-+..  -...+++.+++.|+|   ||.+++.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q  205 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ  205 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence            985433221211  134789999999999   8877653

>PLN02672 methionine S-methyltransferase

Probab=98.66  E-value=2.8e-07  Score=97.01  Aligned_cols=65  Identities=20%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCceEEeCCCCCCCC
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------------------TDNLKFIAGDMNQSIP  251 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------------------~~rv~~~~~d~~~~~~  251 (359)
                      +.+|||+|||+|.+++.+++.+|+.+++++|+ +.+++.++.                      .+||+++.+|++++.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999999999999999 777765532                      2479999999998443


Q ss_pred             ----CccEEEec
Q 043623          252 ----SADAFLFK  259 (359)
Q Consensus       252 ----~~D~i~~~  259 (359)
                          .||+|+++
T Consensus       199 ~~~~~fDlIVSN  210 (1082)
T PLN02672        199 DNNIELDRIVGC  210 (1082)
T ss_pred             ccCCceEEEEEC
Confidence                49999886

>TIGR00417 speE spermidine synthase

Probab=98.64  E-value=1e-07  Score=86.85  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---C-CCCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---S-IPSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~-~~~~D~i~  257 (359)
                      +.+.+||+||||+|..+..+++..+..+++++|+ +++++.+++          .++++++.+|..+   . ...||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            3457999999999999999998766678999999 677665543          3688898888765   1 22599999


Q ss_pred             ecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +...-..-+...  ..++++.+++.|+|   ||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence            876532222222  35789999999999   8888775

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PHA03412 putative methyltransferase; Provisional

Probab=98.62  E-value=2.2e-07  Score=81.50  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEecchhccCC-
Q 043623          195 LSSLVEVGGGTGSFARIISEAF---PSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYD-  266 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~-  266 (359)
                      ..+|||+|||+|.++..++++.   +..+++++|+ +.+++.++. ..++.++.+|+.. +.. .||+|+++=-++... 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence            5799999999999999999875   4678999999 778888775 4678999999987 444 599999986555322 


Q ss_pred             -h--------hHHHHHHHHHHHhcCC
Q 043623          267 -D--------EVCLKLLKNCREAVAS  283 (359)
Q Consensus       267 -d--------~~~~~iL~~~~~~L~p  283 (359)
                       +        .-...+++++.+++++
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~  155 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQ  155 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCC
Confidence             1        2234588999987777

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3e-07  Score=78.89  Aligned_cols=98  Identities=12%  Similarity=0.205  Sum_probs=75.9

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP---S  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~---~  252 (359)
                      .++..+.  .+++.+|||||||+|+.+.-|++.--  +++.+|. ++..+.|++      ..+|.++.+|-...++   +
T Consensus        63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence            4455555  78889999999999999999998754  8888898 666666653      5569999999998554   4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ||.|+.....-..|+        .+.+.|+|   ||++++-.-
T Consensus       139 yD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG  170 (209)
T COG2518         139 YDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG  170 (209)
T ss_pred             cCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence            999999987755554        24456899   999988655

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.60  E-value=6.9e-08  Score=84.13  Aligned_cols=99  Identities=15%  Similarity=0.300  Sum_probs=71.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--  251 (359)
                      ..++..+.  +.++.+|||||||+|+++.-+++.. +..+++.+|. +..++.|++      ..+|+++.+|....++  
T Consensus        62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            34555665  7889999999999999999999874 4457899998 777776664      5689999999887544  


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       .||.|++.......+.        .+.+.|++   ||++++-
T Consensus       140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p  171 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP  171 (209)
T ss_dssp             -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred             CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence             4999999987754433        24556899   8988874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.59  E-value=2.4e-07  Score=82.52  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=74.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-------CCCc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-------IPSA  253 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-------~~~~  253 (359)
                      ..++++|||||||+|.-+..++...| +.+++.+|. ++.++.|++       .++|+++.+|..+  +       .+.|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            44678999999999999999998765 679999999 677766653       5789999999976  1       1359


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|++-.     ..+.-..++..+.+.|+|   ||.|++-+..+
T Consensus       146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn~l~  181 (234)
T PLN02781        146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDNTLW  181 (234)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEcCCc
Confidence            9998753     223345789999999999   77655544433

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.57  E-value=2.4e-07  Score=84.43  Aligned_cols=97  Identities=10%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             CCeEEEEcCCchH--H--HHHHHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 043623          195 LSSLVEVGGGTGS--F--ARIISEAFP----SIKCSVLEL-PHVIADLPE------------------------------  235 (359)
Q Consensus       195 ~~~vlDvG~G~G~--~--~~~l~~~~p----~~~~~~~D~-~~~i~~a~~------------------------------  235 (359)
                      ..+|...||+||.  +  ++.+.+..+    ++++++.|+ +.+++.|+.                              
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999994  3  333444332    468999999 677765542                              


Q ss_pred             -------CCCceEEeCCCCC-CCC---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          236 -------TDNLKFIAGDMNQ-SIP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       236 -------~~rv~~~~~d~~~-~~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                             ..+|+|..+|..+ ++|   .||+|+|.++|.+++++...++++++.++|+|   ||.|++-.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence                   2567899999988 543   49999999999999999899999999999999   89877643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.55  E-value=9.1e-07  Score=79.61  Aligned_cols=98  Identities=14%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCch----HHHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 043623          194 GLSSLVEVGGGTG----SFARIISEAFP-----SIKCSVLEL-PHVIADLPE----------------------------  235 (359)
Q Consensus       194 ~~~~vlDvG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~i~~a~~----------------------------  235 (359)
                      +.-+|.-+||+||    .+++.+.+.+|     .+++++.|+ ..+++.|+.                            
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            4789999999999    45566677775     478999999 677776652                            


Q ss_pred             -------CCCceEEeCCCCC-C-CCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          236 -------TDNLKFIAGDMNQ-S-IPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       236 -------~~rv~~~~~d~~~-~-~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                             ...|.|..+|..+ + .++ ||+|+|.+||-.++.+.-.+++.+.+..|+|   ||.|+|-.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence                   3468999999998 4 444 9999999999999988888999999999999   89888843

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.54  E-value=2e-07  Score=86.79  Aligned_cols=96  Identities=17%  Similarity=0.146  Sum_probs=71.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCceEEeCCCCCC-----C-
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------------TDNLKFIAGDMNQS-----I-  250 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------------~~rv~~~~~d~~~~-----~-  250 (359)
                      +..+|||+|||.|+-+....+..+. .++|+|+ +..++.|++                .-...++.+|.+..     + 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            6789999999999998888886443 7999999 566666542                12346788887751     1 


Q ss_pred             -C--CccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          251 -P--SADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       251 -~--~~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       +  .||+|-+...||+.  +.+.+..+|+++.+.|+|   ||.++..
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT  185 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGT  185 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence             2  49999999999984  566677799999999999   8888765

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.53  E-value=4.6e-07  Score=80.78  Aligned_cols=141  Identities=18%  Similarity=0.303  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCCch--HHHHHHHH-HCCCCeEEEeec-hHHHhcCCC----CCC--ceEEeCCCCCC-----CC-------
Q 043623          194 GLSSLVEVGGGTG--SFARIISE-AFPSIKCSVLEL-PHVIADLPE----TDN--LKFIAGDMNQS-----IP-------  251 (359)
Q Consensus       194 ~~~~vlDvG~G~G--~~~~~l~~-~~p~~~~~~~D~-~~~i~~a~~----~~r--v~~~~~d~~~~-----~~-------  251 (359)
                      +..+.||||||-=  ...-++++ ..|+.+++.+|. |-++..++.    .++  ..++.+|+.++     .|       
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            6789999999943  44555544 579999999999 777777664    444  88999999983     11       


Q ss_pred             --CccEEEecchhccCCh-hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCH
Q 043623          252 --SADAFLFKLIFHDYDD-EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSE  328 (359)
Q Consensus       252 --~~D~i~~~~vlh~~~d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~  328 (359)
                        ..=++++..+||+.+| ++...+++.++++|.|   |+.|+|.....+....     ........+.........||.
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~-----~~~~~~~~~~~~~~~~~~Rs~  219 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPE-----RAEALEAVYAQAGSPGRPRSR  219 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHH-----HHHHHHHHHHHCCS----B-H
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHH-----HHHHHHHHHHcCCCCceecCH
Confidence              1347899999999987 6788999999999999   8888888776543211     111222333222345778999


Q ss_pred             HHHHHHHHhcCCceee
Q 043623          329 KEWERLFFDAGFTSYK  344 (359)
Q Consensus       329 ~e~~~ll~~aGf~~~~  344 (359)
                      +|+.++|.  ||..++
T Consensus       220 ~ei~~~f~--g~elve  233 (267)
T PF04672_consen  220 EEIAAFFD--GLELVE  233 (267)
T ss_dssp             HHHHHCCT--TSEE-T
T ss_pred             HHHHHHcC--CCccCC
Confidence            99999998  777654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=4.2e-07  Score=88.31  Aligned_cols=105  Identities=12%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--CC--CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--IP--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~~--~~D~i~~~~  260 (359)
                      ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++     .-+++++.+|+.+ +  .+  .||.|++.-
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA  321 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence            45678999999999999999999988789999999 777776653     3347889999986 2  22  499998432


Q ss_pred             ------hhcc-------CChhH-------HHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          261 ------IFHD-------YDDEV-------CLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       261 ------vlh~-------~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                            ++..       ...++       -.++|.++.+.|+|   ||++++.......
T Consensus       322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~  377 (427)
T PRK10901        322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILP  377 (427)
T ss_pred             CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence                  1211       12221       13689999999999   9998877654433

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.52  E-value=2.9e-07  Score=79.77  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeC--CCC-----CCC--C-CccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAG--DMN-----QSI--P-SADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~--d~~-----~~~--~-~~D~i~~~~vl  262 (359)
                      ....++|||||+|.-++.++..+.  ++++.|. +.+++.+++..++++...  .|.     +-.  + +.|+|++..++
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            334899999999977777777654  6999999 889999988666554221  222     211  2 49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      |-++.+   ++.+.++++||+  +||.+.|....
T Consensus       111 HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y~  139 (261)
T KOG3010|consen  111 HWFDLE---RFYKEAYRVLRK--DGGLIAVWNYN  139 (261)
T ss_pred             HhhchH---HHHHHHHHHcCC--CCCEEEEEEcc
Confidence            877664   679999999998  26666665544

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.50  E-value=9e-07  Score=78.82  Aligned_cols=126  Identities=15%  Similarity=0.244  Sum_probs=89.2

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISE-AFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      .|+..++  +.++.+|||.|.|+|.++..|++ -.|..++.-+|. ++..+.|++       .++|++...|+.+ .++ 
T Consensus        31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            4555666  88999999999999999999997 468889999998 666655553       6789999999975 332 


Q ss_pred             ----CccEEEecchhccCChhHHHHHHHHHHHhc-CCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623          252 ----SADAFLFKLIFHDYDDEVCLKLLKNCREAV-ASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER  326 (359)
Q Consensus       252 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L-~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (359)
                          .+|+|++-     ++++.  ..+..+.++| +|   ||++++.-++...                           
T Consensus       109 ~~~~~~DavfLD-----lp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ---------------------------  151 (247)
T PF08704_consen  109 ELESDFDAVFLD-----LPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ---------------------------  151 (247)
T ss_dssp             T-TTSEEEEEEE-----SSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH---------------------------
T ss_pred             cccCcccEEEEe-----CCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH---------------------------
Confidence                48998874     66664  5699999999 88   9999988765321                           


Q ss_pred             CHHHHHHHHHhcCCceeeEEec
Q 043623          327 SEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                       .....+.|++.||..+++..+
T Consensus       152 -v~~~~~~L~~~gf~~i~~~Ev  172 (247)
T PF08704_consen  152 -VQKTVEALREHGFTDIETVEV  172 (247)
T ss_dssp             -HHHHHHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHHHHHCCCeeeEEEEE
Confidence             233355667788888776543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.50  E-value=9.2e-07  Score=86.40  Aligned_cols=105  Identities=13%  Similarity=0.216  Sum_probs=76.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-CCccEEEec--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-PSADAFLFK--  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-~~~D~i~~~--  259 (359)
                      ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      ..+|+++.+|+.+ +. ..||+|++-  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            44668999999999999999988654 458999999 777766653      3578999999987 32 249999862  


Q ss_pred             ----chh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          260 ----LIF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       260 ----~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                          .++       +.++.++.       .++|.++.+.|+|   ||+++........
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~  382 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEP  382 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence                122       12333322       2689999999999   8988887665543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.50  E-value=9.8e-07  Score=81.65  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=89.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeC----CCCCCC--C--CccEE
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAG----DMNQSI--P--SADAF  256 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~----d~~~~~--~--~~D~i  256 (359)
                      ...++||||||+|.....++.+.++++++++|+ +.+++.|+.        .++|++...    +++...  +  .||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999999999998889999999999 777777663        356777542    333321  2  49999


Q ss_pred             EecchhccCChhH---HHHHHHHHH----------------HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh
Q 043623          257 LFKLIFHDYDDEV---CLKLLKNCR----------------EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM  317 (359)
Q Consensus       257 ~~~~vlh~~~d~~---~~~iL~~~~----------------~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~  317 (359)
                      +++=-+|.-..+.   ...-.+++.                +.+.+   ||.+-++..+..+..      ..  .-....
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~------~~--~~~~gw  262 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESK------AF--AKQVLW  262 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHH------HH--HhhCcE
Confidence            9998776544332   111222222                12223   454433333322210      00  000011


Q ss_pred             hhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          318 MTCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       318 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      .+.+=|+.-+.+.+.+.|++.|.+.++++.+
T Consensus       263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~  293 (321)
T PRK11727        263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM  293 (321)
T ss_pred             EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence            1112356669999999999999998888887

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.50  E-value=1.2e-06  Score=77.20  Aligned_cols=142  Identities=20%  Similarity=0.236  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC-CccEEEecchhccCChhHHH
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP-SADAFLFKLIFHDYDDEVCL  271 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~-~~D~i~~~~vlh~~~d~~~~  271 (359)
                      ...++||||.|-|..+..++..+.+  +.+-+. +.|..+.++ ...+++..+-....+ .||+|.|.|+|....++  .
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~  168 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L  168 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence            4578999999999999999998876  555566 667666553 444444443333222 49999999999666655  4


Q ss_pred             HHHHHHHHhcCCCCCCceEEEEee-----ecCCCCCCchHHHHHHHhhhhhhhhcC-CcccCHHHHHHHHHhcCCceeeE
Q 043623          272 KLLKNCREAVASSDGREKVIIVDI-----VVNEKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       272 ~iL~~~~~~L~p~~~gG~lli~e~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~t~~e~~~ll~~aGf~~~~~  345 (359)
                      .+|+.++++|+|   +|++++.=.     ...........+..  ..+     ..| .-+-....+.++|+.+||++.+.
T Consensus       169 ~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~~~g~~~~P~e--~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~  238 (265)
T PF05219_consen  169 TLLRDIRRALKP---NGRLILAVVLPFRPYVEFGGGKSNRPSE--LLP-----VKGATFEEQVSSLVNVFEPAGFEVERW  238 (265)
T ss_pred             HHHHHHHHHhCC---CCEEEEEEEecccccEEcCCCCCCCchh--hcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            789999999999   898876421     11111100000000  010     111 11112344558999999999999


Q ss_pred             EecCC
Q 043623          346 TPLLG  350 (359)
Q Consensus       346 ~~~~~  350 (359)
                      ...|.
T Consensus       239 tr~PY  243 (265)
T PF05219_consen  239 TRLPY  243 (265)
T ss_pred             eccCc
Confidence            88763

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.49  E-value=5.6e-07  Score=87.43  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC----CCccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI----PSADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~----~~~D~i~~  258 (359)
                      ..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++       ..++.++.+|... +.    ..||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            45678999999999999999999888789999999 677765543       1134446677665 22    24999985


Q ss_pred             c------chhccCCh-------hH-------HHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          259 K------LIFHDYDD-------EV-------CLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       259 ~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      .      .+++..++       ++       -.++|.++.+.|||   ||++++........
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~  374 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPE  374 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence            2      45655443       11       24789999999999   99999887766544

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.49  E-value=7.9e-07  Score=86.89  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~  259 (359)
                      ..++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++      ..+|+++.+|+.+ .  ++ .||+|++.
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            4567899999999999999999986 6789999999 677665543      2458999999876 2  33 59999874


Q ss_pred             ch------hcc-------CChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          260 LI------FHD-------YDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       260 ~v------lh~-------~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      --      +.+       ++..+.       .++|+.+.+.|+|   ||+++......
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~  382 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI  382 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence            21      111       111111       3689999999999   89987654443

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.42  E-value=1e-06  Score=79.81  Aligned_cols=81  Identities=20%  Similarity=0.338  Sum_probs=61.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCCccE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPSADA  255 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~~D~  255 (359)
                      ..+++..+  ..++.+|||||||+|.++..++++.  .+++++|+ +.+++.+++    .++++++.+|+.+ +++.+|.
T Consensus        19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~   94 (258)
T PRK14896         19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK   94 (258)
T ss_pred             HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence            34555554  5667899999999999999999983  48999999 667665543    4689999999998 7778998


Q ss_pred             EEecchhccCCh
Q 043623          256 FLFKLIFHDYDD  267 (359)
Q Consensus       256 i~~~~vlh~~~d  267 (359)
                      |+++-- ++.+.
T Consensus        95 Vv~NlP-y~i~s  105 (258)
T PRK14896         95 VVSNLP-YQISS  105 (258)
T ss_pred             EEEcCC-cccCc
Confidence            777544 44543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.41  E-value=7.9e-07  Score=76.84  Aligned_cols=94  Identities=18%  Similarity=0.347  Sum_probs=67.0

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCceEEeCCCCC--C--CC--CccEEEecchhc
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------ETDNLKFIAGDMNQ--S--IP--SADAFLFKLIFH  263 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------~~~rv~~~~~d~~~--~--~~--~~D~i~~~~vlh  263 (359)
                      .+||||||.|.++..+++.+|+..++|+|+ ...+..+.      ...|+.++.+|+..  .  ++  +.|-|++.+- -
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D   98 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D   98 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence            899999999999999999999999999998 45544432      27899999999887  1  22  3666665532 1


Q ss_pred             cCChhH-------HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          264 DYDDEV-------CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       264 ~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      -|+...       ...+|..+.+.|+|   ||.|.+..
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T  133 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT  133 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence            232211       24689999999999   89886643

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.40  E-value=1.6e-06  Score=84.51  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C----C--CCccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S----I--PSADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~----~--~~~D~i  256 (359)
                      ..++.+|||+|||+|..+..+++... ..+++++|. +..++.+++      ..+|+++.+|..+ +    .  ..||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            45678999999999999999998754 468999998 667766543      3568999999876 3    1  149999


Q ss_pred             Eec------chhccCCh-------hH-------HHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          257 LFK------LIFHDYDD-------EV-------CLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       257 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      ++.      .+++..++       ++       -.++|.++.+.|||   ||+++......
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi  387 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL  387 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence            973      34544333       11       14789999999999   99888766554

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.38  E-value=1.1e-06  Score=79.30  Aligned_cols=89  Identities=17%  Similarity=0.270  Sum_probs=63.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCCcc-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPSAD-  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~~D-  254 (359)
                      ..+++.++  ..++.+|||||||+|.++..++++.+  +++++|. +.+++.++.    .++++++.+|+.+ +++.+| 
T Consensus        19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~   94 (253)
T TIGR00755        19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK   94 (253)
T ss_pred             HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence            34555554  56678999999999999999999986  4888898 666665543    4789999999998 665566 


Q ss_pred             -EEEecchhccCChhHHHHHHHHHH
Q 043623          255 -AFLFKLIFHDYDDEVCLKLLKNCR  278 (359)
Q Consensus       255 -~i~~~~vlh~~~d~~~~~iL~~~~  278 (359)
                       .++.++.-++++.    .++.++.
T Consensus        95 ~~~vvsNlPy~i~~----~il~~ll  115 (253)
T TIGR00755        95 QLKVVSNLPYNISS----PLIFKLL  115 (253)
T ss_pred             cceEEEcCChhhHH----HHHHHHh
Confidence             3445555555544    3444444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.38  E-value=9.1e-07  Score=80.71  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=60.2

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCCCc--c
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIPSA--D  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~~~--D  254 (359)
                      ..+++.++  ..++.+|||||||+|.++..++++.+  +++++|. +.+++.+++   .++++++.+|+.+ +++++  |
T Consensus        32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~  107 (272)
T PRK00274         32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL  107 (272)
T ss_pred             HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence            34455554  56678999999999999999999975  8999998 777777654   3689999999998 55543  5


Q ss_pred             EEEecchhccCCh
Q 043623          255 AFLFKLIFHDYDD  267 (359)
Q Consensus       255 ~i~~~~vlh~~~d  267 (359)
                      .|+. +.-++.+.
T Consensus       108 ~vv~-NlPY~iss  119 (272)
T PRK00274        108 KVVA-NLPYNITT  119 (272)
T ss_pred             eEEE-eCCccchH
Confidence            5544 44455443

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.38  E-value=2e-06  Score=77.74  Aligned_cols=94  Identities=17%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCCC-ccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIPS-ADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~~-~D~i~~~~vlh~  264 (359)
                      .++.|||||||+|.++...+.+... ++..++..+|.+.|++       .+||.++.|-+++ ++|+ +|+++..-.=+.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~-~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m  255 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAK-KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM  255 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcc-eEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence            3578999999999999988887543 7889998888777664       7999999999999 8886 999998755555


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEE
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      +-++...+-.-.+++.|+|   .|+++
T Consensus       256 L~NERMLEsYl~Ark~l~P---~GkMf  279 (517)
T KOG1500|consen  256 LVNERMLESYLHARKWLKP---NGKMF  279 (517)
T ss_pred             hhhHHHHHHHHHHHhhcCC---CCccc
Confidence            5566666656678899999   78775

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.37  E-value=2.9e-06  Score=77.10  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~~~D~i~~~~  260 (359)
                      ..++.+|||+|||+|..+..+++... ..+++++|. +..++.+++      ..+|+++..|... +  .+.||.|++.-
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            45678999999999999999998764 358999999 667665543      3568899898765 2  23599998631


Q ss_pred             ------hhc-------cCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          261 ------IFH-------DYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       261 ------vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                            ++.       .++.+..       .++|+++.+.|||   ||+|+......
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~  202 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL  202 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence                  221       1232222       3599999999999   89887655443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.35  E-value=2.9e-06  Score=82.40  Aligned_cols=105  Identities=10%  Similarity=0.150  Sum_probs=75.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C-C-C-CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S-I-P-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~-~-~-~~D~i~~~  259 (359)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++      ..+|+++.+|..+ + . + .||.|++.
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            4567899999999999999999876 4679999999 677766553      3468899999876 3 2 2 49999862


Q ss_pred             ------chhcc-------CChhH-------HHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          260 ------LIFHD-------YDDEV-------CLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       260 ------~vlh~-------~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                            .++..       ++.++       =.++|.++.+.|+|   ||.++........
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~  371 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK  371 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence                  22221       12111       14679999999999   8987666555433

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.34  E-value=4.7e-06  Score=68.22  Aligned_cols=110  Identities=14%  Similarity=0.173  Sum_probs=88.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C-----CC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S-----IP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~-----~~-  251 (359)
                      +...+.++  ...+.-||++|.|||.++.+++.+. ++-..+.++. ++......+ -+.++++.||.++ .     .+ 
T Consensus        38 ~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g  115 (194)
T COG3963          38 RKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG  115 (194)
T ss_pred             HHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence            34455555  6677899999999999999998875 5557888887 676666554 6777899999887 2     22 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                       .||.|++.--+-+++.....++|+.+...|++   ||.++-....
T Consensus       116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg  158 (194)
T COG3963         116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG  158 (194)
T ss_pred             CeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence             39999999999999999999999999999999   8888877665

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.33  E-value=4.7e-06  Score=81.46  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-----CC--CccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-----IP--SADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-----~~--~~D~i~  257 (359)
                      ..++.+|||+|||+|.++..+++..  .+++++|. +++++.+++      .++++++.+|+.+.     +.  .||+|+
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi  372 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL  372 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence            4566899999999999999999875  58999999 778877664      35799999998652     22  389998


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      +.-     |......+++.+.+ ++|   ++.++|
T Consensus       373 ~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv  398 (443)
T PRK13168        373 LDP-----PRAGAAEVMQALAK-LGP---KRIVYV  398 (443)
T ss_pred             ECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence            743     21112244555544 577   454444

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.30  E-value=2.2e-06  Score=83.09  Aligned_cols=127  Identities=17%  Similarity=0.269  Sum_probs=80.2

Q ss_pred             ChhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc--cCCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEeec-h
Q 043623          155 NIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI--FDGLSSLVEVGGGTGSFARIISEAF----PSIKCSVLEL-P  227 (359)
Q Consensus       155 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~  227 (359)
                      ..|+-+++|+..-..|.+++..      .+.......  -.+...|+|||||+|-++...+++.    ...++++++- +
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~  224 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEE------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP  224 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHH------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred             ccHhhHhcCHHHHHHHHHHHHH------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence            4577788888887888877532      222221100  0135789999999999998776654    3468999997 4


Q ss_pred             HHHhcC----C--C-CCCceEEeCCCCC-CCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceE
Q 043623          228 HVIADL----P--E-TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKV  290 (359)
Q Consensus       228 ~~i~~a----~--~-~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~l  290 (359)
                      .++...    +  . .++|+++.+|+.+ ..| .+|+|++-..=....+|-..+.|..+.+.|||   ||.+
T Consensus       225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~  293 (448)
T PF05185_consen  225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIM  293 (448)
T ss_dssp             HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred             hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEE
Confidence            333221    1  1 6899999999999 666 49999877554333444455778888999999   6543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.29  E-value=2.2e-06  Score=72.71  Aligned_cols=101  Identities=18%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCceEEeCCCCCC------CC-CccE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---------TDNLKFIAGDMNQS------IP-SADA  255 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---------~~rv~~~~~d~~~~------~~-~~D~  255 (359)
                      ..++.+|||+|||+|..++.+++..+..+++.-|.+++++..+.         ..++.+...|-.++      .+ .||+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            45678999999999999999999867779999998666554331         46778877765442      12 4999


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+.+.++|+  ++....+++.+.+.|+|   +|.+++....+
T Consensus       123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred             EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence            999999975  45567889999999999   77777766654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.26  E-value=3.1e-06  Score=77.83  Aligned_cols=88  Identities=23%  Similarity=0.414  Sum_probs=66.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~  252 (359)
                      ..+++...  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++       .++++++.+|+.+ +++.
T Consensus        26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~  101 (294)
T PTZ00338         26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY  101 (294)
T ss_pred             HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence            44555554  5677899999999999999999874  47899998 667766543       4689999999998 6677


Q ss_pred             ccEEEecchhccCChhHHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLL  274 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL  274 (359)
                      +|+|+. +..++++.+...++|
T Consensus       102 ~d~Vva-NlPY~Istpil~~ll  122 (294)
T PTZ00338        102 FDVCVA-NVPYQISSPLVFKLL  122 (294)
T ss_pred             cCEEEe-cCCcccCcHHHHHHH
Confidence            897765 555666665555555

>PRK04148 hypothetical protein; Provisional

Probab=98.26  E-value=1.2e-05  Score=64.44  Aligned_cols=93  Identities=14%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCchH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC----CccEEEecchhccCCh
Q 043623          194 GLSSLVEVGGGTGS-FARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP----SADAFLFKLIFHDYDD  267 (359)
Q Consensus       194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~----~~D~i~~~~vlh~~~d  267 (359)
                      ...+|+|||||+|. ++..|.+.  +..++++|+ +..++.+++ ..++++..|.+++-+    ++|+|...+     ++
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp   87 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP   87 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence            45789999999996 77777765  568999999 777777764 457899999999533    599999886     45


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      .+.+.-+.++.+..     |.-++|.....+.
T Consensus        88 ~el~~~~~~la~~~-----~~~~~i~~l~~e~  114 (134)
T PRK04148         88 RDLQPFILELAKKI-----NVPLIIKPLSGEE  114 (134)
T ss_pred             HHHHHHHHHHHHHc-----CCCEEEEcCCCCC
Confidence            66677777777766     4567776554433

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.25  E-value=2.7e-06  Score=76.68  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechH-HHhcCCC------------CCCceEEeCCCCC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPH-VIADLPE------------TDNLKFIAGDMNQ-  248 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~i~~a~~------------~~rv~~~~~d~~~-  248 (359)
                      .++..+   .+++..++|+|||-|.-++..-++.-+ .++++|+.+ .|++++.            .-.+.|+++|-+. 
T Consensus       109 ~LI~~y---~~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~  184 (389)
T KOG1975|consen  109 VLINLY---TKRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE  184 (389)
T ss_pred             HHHHHH---hccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence            344444   367789999999999999988876432 789999954 5777663            2246789998775 


Q ss_pred             C----C----CCccEEEecchhcc-C-ChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          249 S----I----PSADAFLFKLIFHD-Y-DDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       249 ~----~----~~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .    +    |.||+|-+.+++|. | +.+.+..+|+++.+.|+|   ||.++=
T Consensus       185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg  235 (389)
T KOG1975|consen  185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG  235 (389)
T ss_pred             HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence            1    2    23999999999998 3 466677899999999999   776654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.21  E-value=2e-06  Score=74.73  Aligned_cols=95  Identities=25%  Similarity=0.309  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-------CCCcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-------IPSAD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-------~~~~D  254 (359)
                      .++++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++       .++|+++.+|..+  +       ...||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            4578999999999999999999887 589999998 666665543       6899999999875  1       12599


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +|++-.     +...-..++..+.+.|+|   || ++|+|.+
T Consensus       124 ~VFiDa-----~K~~y~~y~~~~~~ll~~---gg-vii~DN~  156 (205)
T PF01596_consen  124 FVFIDA-----DKRNYLEYFEKALPLLRP---GG-VIIADNV  156 (205)
T ss_dssp             EEEEES-----TGGGHHHHHHHHHHHEEE---EE-EEEEETT
T ss_pred             EEEEcc-----cccchhhHHHHHhhhccC---Ce-EEEEccc
Confidence            999875     334456789999999999   55 5555544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=98.21  E-value=5.3e-06  Score=75.11  Aligned_cols=98  Identities=14%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSA  253 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~  253 (359)
                      ..++++|||||+++|..+..+++..| +.+++.+|. ++..+.|++       .++|+++.+|..+  + .      +.|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            45679999999999999999999875 668999998 666666553       6799999999876  1 1      259


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|++-.     +...-..++..+.+.|+|   ||.|++-+..+
T Consensus       196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~DNvL~  231 (278)
T PLN02476        196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVMDNVLW  231 (278)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEecCcc
Confidence            9998864     334457889999999999   77655544443

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.20  E-value=2.9e-06  Score=72.56  Aligned_cols=93  Identities=12%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC--ceEEeCCCCC--CCC--CccEEEecchhc---
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDN--LKFIAGDMNQ--SIP--SADAFLFKLIFH---  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~r--v~~~~~d~~~--~~~--~~D~i~~~~vlh---  263 (359)
                      ...-|||||||+|..+..+...  +..++++|+ |.|++.|.+ ..  -.++.+||=+  |++  .||.+++...+.   
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc  126 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC  126 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence            3678999999999988887775  468999999 899998875 22  3578888888  444  399987765542   


Q ss_pred             c------CChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          264 D------YDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       264 ~------~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      |      .+......++..++..|++   |++-++
T Consensus       127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~  158 (270)
T KOG1541|consen  127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL  158 (270)
T ss_pred             ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence            1      2333345678889999999   787765

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.17  E-value=4.5e-06  Score=72.45  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC---------------CCCCceEEeCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP---------------ETDNLKFIAGD  245 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~---------------~~~rv~~~~~d  245 (359)
                      ..++..+.  +.+....+|+|||.|......+...+--+.+|+++ +...+.+.               ...++++..+|
T Consensus        32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            34566655  67788999999999999998887766545999998 44433222               15678899999


Q ss_pred             CCC-C-----CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          246 MNQ-S-----IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       246 ~~~-~-----~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      |.+ +     +.++|+|++++.+  ++++ ...-|.+....||+   |.+|+-.....+.
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~  163 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPR  163 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-T
T ss_pred             ccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCC
Confidence            998 3     2369999999976  5544 44556777788998   7776655555444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=5.9e-06  Score=69.31  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vl  262 (359)
                      -.+++|+|+|||||.+++..+-..|. +++++|+ |++++.+++     ..+|.|+..|..+....+|.++++--+
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF  118 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF  118 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence            34678999999999999998887665 8999999 888887765     568999999999855568888887544

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.15  E-value=4.4e-06  Score=74.35  Aligned_cols=97  Identities=15%  Similarity=0.118  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCC-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYD-  266 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~-  266 (359)
                      .+.+..++|+|||.|.++.    .+|.+..++.|+ ...+..++..+.......|+.. |++  .||.++...++||++ 
T Consensus        43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT  118 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST  118 (293)
T ss_pred             cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence            3457899999999998765    358899999999 5667777765544677788888 665  499999999999987 


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          267 DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .....++++++.+.++|   ||..+|.-+
T Consensus       119 ~~RR~~~l~e~~r~lrp---gg~~lvyvw  144 (293)
T KOG1331|consen  119 RERRERALEELLRVLRP---GGNALVYVW  144 (293)
T ss_pred             HHHHHHHHHHHHHHhcC---CCceEEEEe
Confidence            44466899999999999   999877643

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.15  E-value=3.9e-06  Score=76.91  Aligned_cols=94  Identities=16%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh  263 (359)
                      .++.|||||||||.++...+++.. .++.++|..++++.+.+       .+.|+++.+.+.+ .+|  ..|+|++-+.=+
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy  138 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY  138 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence            468999999999999999999874 58999998777666553       6779999999988 444  599998876544


Q ss_pred             cCChhH-HHHHHHHHHHhcCCCCCCceEE
Q 043623          264 DYDDEV-CLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       264 ~~~d~~-~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      ..--+. .-.+|-.=-+.|+|   ||.++
T Consensus       139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~  164 (346)
T KOG1499|consen  139 FLLYESMLDSVLYARDKWLKE---GGLIY  164 (346)
T ss_pred             HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence            432222 12344444568999   78665

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.14  E-value=1.2e-05  Score=69.19  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCC-----CccEEEecchhccCCh-
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIP-----SADAFLFKLIFHDYDD-  267 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~-----~~D~i~~~~vlh~~~d-  267 (359)
                      ..++|||||=+....+.-   .+-..++.+|+...-        -.+...||++ |.|     .||+|.++-||-+.|+ 
T Consensus        52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             cceEEeecccCCCCcccc---cCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            479999999876655542   445678999984321        2245689998 776     2999999999988884 


Q ss_pred             hHHHHHHHHHHHhcCCCCCCce-----EEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          268 EVCLKLLKNCREAVASSDGREK-----VIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                      .+.-++++++++.|+|   +|.     ++|+=+...                     ..+.+-.+.+.|.++++..||..
T Consensus       121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~  176 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR  176 (219)
T ss_pred             HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence            4566899999999999   788     766533211                     12344448999999999999999


Q ss_pred             eeEEecC
Q 043623          343 YKITPLL  349 (359)
Q Consensus       343 ~~~~~~~  349 (359)
                      ++.....
T Consensus       177 ~~~~~~~  183 (219)
T PF11968_consen  177 VKYKKSK  183 (219)
T ss_pred             EEEEecC
Confidence            9887654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=6.4e-06  Score=69.99  Aligned_cols=100  Identities=14%  Similarity=0.227  Sum_probs=73.0

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCceEEe
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPE----------------TDNLKFIA  243 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~----------------~~rv~~~~  243 (359)
                      .+++.+...+.++.+.||||+|+|.++..++.--  +....+|+|. |+.++..++                ..++.++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            3444444446788999999999999999888532  4444589998 888765442                56788999


Q ss_pred             CCCCCCC---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          244 GDMNQSI---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       244 ~d~~~~~---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||-..-+   .+||.|.+...        +.++.+++..-|+|   ||+++|-
T Consensus       151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip  192 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIP  192 (237)
T ss_pred             CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEe
Confidence            9988733   35999988832        23556777777899   8999873

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.12  E-value=1e-05  Score=70.50  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEe-CCCCC---C--CCCccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIA-GDMNQ---S--IPSADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~-~d~~~---~--~~~~D~i  256 (359)
                      ..++++||+||.+.|.-+..|+...| +.+.+.+|. ++..+.|++       .++|+.+. +|..+   .  .++||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            46789999999999999999999999 889999999 778877764       67788888 58766   2  2459999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      ++-.     ....-..+|..+.+.|+|   || ++|+|.+....
T Consensus       137 FIDa-----dK~~yp~~le~~~~lLr~---GG-liv~DNvl~~G  171 (219)
T COG4122         137 FIDA-----DKADYPEYLERALPLLRP---GG-LIVADNVLFGG  171 (219)
T ss_pred             EEeC-----ChhhCHHHHHHHHHHhCC---Cc-EEEEeecccCC
Confidence            8864     223345789999999999   55 55555555443

>PLN02823 spermine synthase

Probab=98.12  E-value=1e-05  Score=75.62  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~  257 (359)
                      +.+++||.||||.|..+..+++..+..+++++|+ +++++.+++          .+|++++.+|..+  . . ..||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4568999999999999999998766678999999 778877663          4799999999877  2 2 2499999


Q ss_pred             ecchhccCC--hh---HHHHHHH-HHHHhcCCCCCCceEEE
Q 043623          258 FKLIFHDYD--DE---VCLKLLK-NCREAVASSDGREKVII  292 (359)
Q Consensus       258 ~~~vlh~~~--d~---~~~~iL~-~~~~~L~p~~~gG~lli  292 (359)
                      +--. ..+.  ..   -..++++ .+++.|+|   ||.+++
T Consensus       182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~  218 (336)
T PLN02823        182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT  218 (336)
T ss_pred             ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence            8631 1110  00   0235777 88999999   786554

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.11  E-value=7.2e-06  Score=70.97  Aligned_cols=96  Identities=13%  Similarity=0.171  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C-CccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P-SADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~-~~D~i~~~~vl  262 (359)
                      ...+|||+|||+|.++..++.+.. .+++++|. +++++.+++      ..+++++.+|+++..   . .||+|++.=-.
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            457999999999999997666554 58999998 667665543      357999999987621   2 49999887553


Q ss_pred             ccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623          263 HDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV  297 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~  297 (359)
                      +. .  -...+++.+..  .|+|   ++ +++++...
T Consensus       132 ~~-g--~~~~~l~~l~~~~~l~~---~~-iv~ve~~~  161 (199)
T PRK10909        132 RK-G--LLEETINLLEDNGWLAD---EA-LIYVESEV  161 (199)
T ss_pred             CC-C--hHHHHHHHHHHCCCcCC---Cc-EEEEEecC
Confidence            22 1  12234454544  3777   44 66666543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.09  E-value=2.1e-05  Score=71.77  Aligned_cols=102  Identities=14%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CCCceE--EeCCCCC---CCCCccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSI-KCSVLEL-PHVIADLPE----TDNLKF--IAGDMNQ---SIPSADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~i~~a~~----~~rv~~--~~~d~~~---~~~~~D~i~~~~vl  262 (359)
                      .+.+|||+|+|.|.-+......++.. +++.+|. +.+++.++.    ......  ...++..   +++..|+|+++++|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L  112 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL  112 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence            45799999999999888888888754 6889998 666665442    111110  1112221   34457999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      -.++++...++++++.+.+.     +.|+|+|+..+..
T Consensus       113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G  145 (274)
T PF09243_consen  113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG  145 (274)
T ss_pred             hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence            98888778888998888774     4899999865544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.07  E-value=1.2e-05  Score=73.05  Aligned_cols=97  Identities=16%  Similarity=0.275  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CCC-CccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SIP-SADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~~-~~D~i~  257 (359)
                      +.+++||-||+|.|..++++++..+--+++.+|+ +++++.+++          .+|++++..|..+   ..+ .||+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            3447999999999999999999988889999999 888887764          4899999999877   344 499999


Q ss_pred             ecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +-..=. ..+.   -...+++.++++|++   +|.++..
T Consensus       155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q  189 (282)
T COG0421         155 VDSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ  189 (282)
T ss_pred             EcCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence            875432 1110   124789999999999   7766655

>PRK00536 speE spermidine synthase; Provisional

Probab=98.02  E-value=2.7e-05  Score=69.98  Aligned_cols=87  Identities=9%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCCC-CCccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQSI-PSADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~~-~~~D~i~~~~  260 (359)
                      +.+++||-||||-|..++++++. |. +++.+|+ +++++.+++          .+|++++.. +.+.. ..||+|+.-.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence            56799999999999999999996 55 9999999 678877664          788888762 32222 3599999875


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .    .+   ....+.++++|+|   ||.++.
T Consensus       148 ~----~~---~~fy~~~~~~L~~---~Gi~v~  169 (262)
T PRK00536        148 E----PD---IHKIDGLKRMLKE---DGVFIS  169 (262)
T ss_pred             C----CC---hHHHHHHHHhcCC---CcEEEE
Confidence            3    22   3668899999999   776655

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.99  E-value=2.1e-05  Score=69.26  Aligned_cols=94  Identities=20%  Similarity=0.297  Sum_probs=68.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----C-C-CCceEEeCCCCC--C--CC--CccEEEecchh
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----E-T-DNLKFIAGDMNQ--S--IP--SADAFLFKLIF  262 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~-~-~rv~~~~~d~~~--~--~~--~~D~i~~~~vl  262 (359)
                      ..+||||||.|.++..+++++|+..++|+|+ ...+..+.    + . +||.++++|+..  +  .+  +.|-|.+++- 
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence            4899999999999999999999999999998 44443332    1 3 389999999876  1  22  3566655532 


Q ss_pred             ccCChhH-------HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          263 HDYDDEV-------CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       263 h~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      --|+...       -..+|+.+.+.|+|   ||.|.+.
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~a  163 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFA  163 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEE
Confidence            1233221       13689999999999   8988764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.99  E-value=1.3e-05  Score=82.49  Aligned_cols=96  Identities=8%  Similarity=0.076  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCCC---CC-CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQS---IP-SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~~---~~-~~D~i~~~~  260 (359)
                      ++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++       . ++++++.+|+++.   .+ .||+|++.-
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            46899999999999999999863 337999999 777777664       2 5899999998762   22 599999852


Q ss_pred             hh--c------cCC-hhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          261 IF--H------DYD-DEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       261 vl--h------~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      --  .      .+. ...-..++..+.+.|+|   ||.+++.
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~  655 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS  655 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence            11  0      000 12235688899999999   8877654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.97  E-value=3e-05  Score=74.31  Aligned_cols=99  Identities=7%  Similarity=-0.012  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCCC---C---C-CccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQS---I---P-SADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~~---~---~-~~D~i  256 (359)
                      .++.+|||+|||+|.++...+.. ...+++++|+ +.+++.+++       . ++++++.+|+++.   +   . .||+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            35689999999999998876653 3448999999 777776653       2 4789999999872   1   2 49999


Q ss_pred             EecchhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          257 LFKLIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       257 ~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ++.--...-+.       ..-..+++.+.+.|+|   ||.++.+..
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc  340 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC  340 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence            97733211111       1233556678899999   888877653

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.94  E-value=3.5e-05  Score=66.36  Aligned_cols=141  Identities=16%  Similarity=0.239  Sum_probs=93.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCc--eEEeCCCCC-CCC--CccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNL--KFIAGDMNQ-SIP--SADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv--~~~~~d~~~-~~~--~~D~i~~~~vlh~  264 (359)
                      +....++|||||-|.....+..+.- -+.+-.|- ..|++.++.  .+.|  .+..+|-+. ++.  ++|+++.+..+|-
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            4456899999999999999998752 26788887 678887765  2333  456677666 655  4999999999985


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc------ccCHHHHHHHHHhc
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI------ERSEKEWERLFFDA  338 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~t~~e~~~ll~~a  338 (359)
                      .+|  ...-+.+++.+|||   +| ++|....-.+.-.     +-.+...+.-+-..||.      .-...++..+|..|
T Consensus       150 ~Nd--LPg~m~~ck~~lKP---Dg-~FiasmlggdTLy-----ELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA  218 (325)
T KOG2940|consen  150 TND--LPGSMIQCKLALKP---DG-LFIASMLGGDTLY-----ELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA  218 (325)
T ss_pred             hcc--CchHHHHHHHhcCC---Cc-cchhHHhccccHH-----HHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence            454  34668889999999   66 4444443333211     11111222112123432      22457899999999


Q ss_pred             CCceeeE
Q 043623          339 GFTSYKI  345 (359)
Q Consensus       339 Gf~~~~~  345 (359)
                      ||....+
T Consensus       219 GF~m~tv  225 (325)
T KOG2940|consen  219 GFSMLTV  225 (325)
T ss_pred             Cccccee
Confidence            9997554

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.94  E-value=0.00019  Score=63.35  Aligned_cols=138  Identities=14%  Similarity=0.146  Sum_probs=83.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCce-EEeCCCCC--------CC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-DLPETDNLK-FIAGDMNQ--------SI  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-~a~~~~rv~-~~~~d~~~--------~~  250 (359)
                      ..+++.+. ....+.+|||+|||||.++..+++. +-.+++++|. +.++. ..++..++. +...|+..        ++
T Consensus        64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~  141 (228)
T TIGR00478        64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF  141 (228)
T ss_pred             HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence            34555544 1135679999999999999999987 3358999999 54544 455556654 33334432        11


Q ss_pred             CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc----
Q 043623          251 PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER----  326 (359)
Q Consensus       251 ~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----  326 (359)
                      ..+|+++.+..+          +|..+.+.|+|   |-.++++-+-..-..         ...      ..+|-.+    
T Consensus       142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KPqFE~~~---------~~~------~~~giv~~~~~  193 (228)
T TIGR00478       142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKPQFEAGR---------EKK------NKKGVVRDKEA  193 (228)
T ss_pred             eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcChHhhhcH---------hhc------CcCCeecCHHH
Confidence            237777776543          47888888988   444445422111110         000      0122222    


Q ss_pred             ---CHHHHHHHHHhcCCceeeEEecC
Q 043623          327 ---SEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       327 ---t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                         -.+++...+.+.||++..+.+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~s~  219 (228)
T TIGR00478       194 IALALHKVIDKGESPDFQEKKIIFSL  219 (228)
T ss_pred             HHHHHHHHHHHHHcCCCeEeeEEECC
Confidence               35677778888899998887764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.93  E-value=1.2e-05  Score=72.05  Aligned_cols=99  Identities=18%  Similarity=0.308  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---C-CC-CccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---S-IP-SADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~-~~-~~D~i  256 (359)
                      +.+++||-||+|.|..+.++++..+..+++++|+ |.+++.+++          .+|++++.+|...   . .. .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            4679999999999999999998766679999999 778777664          4799999999865   2 23 59999


Q ss_pred             EecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          257 LFKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       257 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +.-..=-..+..  -...+++.+++.|+|   +|.+++.-
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence            875432111111  135789999999999   77666654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.93  E-value=3e-05  Score=69.32  Aligned_cols=97  Identities=13%  Similarity=0.049  Sum_probs=73.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-------CC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-------PS  252 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-------~~  252 (359)
                      ..+.++||+||+++|.-+..++... ++.+++.+|. ++..+.|++       .++|+++.||..+  + .       ..
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            3457899999999999999999886 4679999998 655555543       6899999999876  2 1       35


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      ||+|++-.-     ...-..++..+.+.|+|   ||. +|+|.+.
T Consensus       157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~---GGv-iv~DNvl  192 (247)
T PLN02589        157 FDFIFVDAD-----KDNYINYHKRLIDLVKV---GGV-IGYDNTL  192 (247)
T ss_pred             ccEEEecCC-----HHHhHHHHHHHHHhcCC---CeE-EEEcCCC
Confidence            999988742     33356788888999999   665 5555443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.92  E-value=5.5e-05  Score=70.14  Aligned_cols=97  Identities=16%  Similarity=0.281  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEeec-hHHHhcC----C--CCCCceE--EeCCCCCC---C-----C
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF----PSIKCSVLEL-PHVIADL----P--ETDNLKF--IAGDMNQS---I-----P  251 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~i~~a----~--~~~rv~~--~~~d~~~~---~-----~  251 (359)
                      .++..|+|+|||+|.-+..|+++.    ...+++.+|+ .+.++.+    +  ..+.|++  +.+|+.++   .     +
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            356789999999999888777655    3467999999 4454433    3  2355665  88888662   1     1


Q ss_pred             -CccEE-EecchhccCChhHHHHHHHHHHH-hcCCCCCCceEEE
Q 043623          252 -SADAF-LFKLIFHDYDDEVCLKLLKNCRE-AVASSDGREKVII  292 (359)
Q Consensus       252 -~~D~i-~~~~vlh~~~d~~~~~iL~~~~~-~L~p~~~gG~lli  292 (359)
                       ...++ ++.+.+.+++++++..+|+++++ .|+|   |+.++|
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi  195 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI  195 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence             24555 44569999999999999999999 9999   787777

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.92  E-value=3.8e-05  Score=71.68  Aligned_cols=64  Identities=22%  Similarity=0.255  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--C-CCccEEEec
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--I-PSADAFLFK  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~-~~~D~i~~~  259 (359)
                      ++.+|||+|||+|.++..+++.  ..+++++|. +.+++.+++      .++++|+.+|+.+ .  . ..||+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            4589999999999999999984  468999999 778877653      3579999999976 2  2 249999887

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.91  E-value=5.8e-05  Score=65.55  Aligned_cols=124  Identities=15%  Similarity=0.258  Sum_probs=87.2

Q ss_pred             EEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--C-ccEEEecchhccCC
Q 043623          198 LVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--S-ADAFLFKLIFHDYD  266 (359)
Q Consensus       198 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~-~D~i~~~~vlh~~~  266 (359)
                      |+||||-.|.+.+.|+++..--++++.|+ +..++.|++       .++|++..+|-++.++  + .|+|+.+.    +.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----MG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----MG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----CC
Confidence            68999999999999999988778999999 666665553       7899999999887443  3 88998887    45


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEE
Q 043623          267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT  346 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  346 (359)
                      -....+||.+....++.   ..++++ .+.                             .....++++|.+.||.+.+=.
T Consensus        77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~  123 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED  123 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence            56678899988887765   345444 321                             046778999999999988765


Q ss_pred             ec---CCcceEEEEE
Q 043623          347 PL---LGLRSFIEVY  358 (359)
Q Consensus       347 ~~---~~~~~~i~~~  358 (359)
                      -+   +-++.+|.+.
T Consensus       124 lv~e~~~~YeIi~~~  138 (205)
T PF04816_consen  124 LVEENGRFYEIIVAE  138 (205)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEeECCEEEEEEEEE
Confidence            54   2345566553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.88  E-value=3.1e-05  Score=68.45  Aligned_cols=74  Identities=26%  Similarity=0.474  Sum_probs=60.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~  252 (359)
                      ..|+.+-+  .++...||+||.|||.++..++++.  -+|+++++ |.+++...+       ....+++.+|+++ ++|-
T Consensus        48 ~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~  123 (315)
T KOG0820|consen   48 DQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR  123 (315)
T ss_pred             HHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence            45666555  7788999999999999999999984  47888888 777765543       5789999999999 8898


Q ss_pred             ccEEEec
Q 043623          253 ADAFLFK  259 (359)
Q Consensus       253 ~D~i~~~  259 (359)
                      ||.++.+
T Consensus       124 fd~cVsN  130 (315)
T KOG0820|consen  124 FDGCVSN  130 (315)
T ss_pred             cceeecc
Confidence            9988774

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.83  E-value=3.2e-05  Score=70.80  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC--C-C--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ--S-I--  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~--~-~--  250 (359)
                      .+++..+.  ..++..+||++||.|.++..+++..| +.+++++|. |++++.+++    .+|++++.+|+.+  . .  
T Consensus         9 ~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~   86 (296)
T PRK00050          9 DEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE   86 (296)
T ss_pred             HHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence            56677665  45678999999999999999999986 789999999 888877764    3689999999886  1 1  


Q ss_pred             --CCccEEEecchh
Q 043623          251 --PSADAFLFKLIF  262 (359)
Q Consensus       251 --~~~D~i~~~~vl  262 (359)
                        +.+|.|++---+
T Consensus        87 ~~~~vDgIl~DLGv  100 (296)
T PRK00050         87 GLGKVDGILLDLGV  100 (296)
T ss_pred             CCCccCEEEECCCc
Confidence              148888876433

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.80  E-value=6.4e-05  Score=64.69  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C--C-C-ccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I--P-S-ADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~--~-~-~D~i~~  258 (359)
                      .+.+|||++||+|.++.+++.+... +++++|. +.+++.+++       .++++++.+|.++  . .  . . +|+|++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            4689999999999999999998764 7999998 566655443       3578999999865  1 1  1 2 566666


Q ss_pred             cchhccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623          259 KLIFHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV  297 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~  297 (359)
                      .=-+. ..  ...+++..+..  .|++    +.++|+|...
T Consensus       128 DPPy~-~~--~~~~~l~~l~~~~~l~~----~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFF-NG--ALQALLELCENNWILED----TVLIVVEEDR  161 (189)
T ss_pred             CcCCC-CC--cHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence            54332 22  12334444433  5666    5577777643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.79  E-value=0.00025  Score=61.46  Aligned_cols=126  Identities=17%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC---CCC--CccEEEe
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ---SIP--SADAFLF  258 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~---~~~--~~D~i~~  258 (359)
                      +.+.+|||...|-|..+++.+++.. .+++-++- |.+++.|+.        ..+|+++.||..+   .++  +||+|+ 
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi-  210 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII-  210 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe-
Confidence            4689999999999999999999854 26666776 788877763        4578999999987   455  389886 


Q ss_pred             cchhccCC------hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          259 KLIFHDYD------DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       259 ~~vlh~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                          |+-|      .--...+.+++++.|+|   ||+++-.--........         .|            -+....
T Consensus       211 ----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~ryrG---------~d------------~~~gVa  262 (287)
T COG2521         211 ----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKRYRG---------LD------------LPKGVA  262 (287)
T ss_pred             ----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCccccc---------CC------------hhHHHH
Confidence                3322      22245789999999999   99997654332211110         00            246778


Q ss_pred             HHHHhcCCceeeEEec
Q 043623          333 RLFFDAGFTSYKITPL  348 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~  348 (359)
                      +-|+++||.+++....
T Consensus       263 ~RLr~vGF~~v~~~~~  278 (287)
T COG2521         263 ERLRRVGFEVVKKVRE  278 (287)
T ss_pred             HHHHhcCceeeeeehh
Confidence            8999999998776654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.79  E-value=9e-05  Score=72.27  Aligned_cols=91  Identities=18%  Similarity=0.300  Sum_probs=63.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C---CC--CccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S---IP--SADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~---~~--~~D~i~  257 (359)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.+++      ..+++++.+|+.+  +   ..  .||+|+
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            4566899999999999999999874  37999999 788877664      4689999999865  1   21  389998


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      +.--=  ..-  ...+++.+.+ ++|   ++.+++
T Consensus       368 ~dPPr--~G~--~~~~l~~l~~-l~~---~~ivyv  394 (431)
T TIGR00479       368 LDPPR--KGC--AAEVLRTIIE-LKP---ERIVYV  394 (431)
T ss_pred             ECcCC--CCC--CHHHHHHHHh-cCC---CEEEEE
Confidence            64321  010  1244555443 788   554444

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=0.00015  Score=63.00  Aligned_cols=119  Identities=17%  Similarity=0.249  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCceEEeCCCCC--CCCC-ccEEEecchhcc
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ--SIPS-ADAFLFKLIFHD  264 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~--~~~~-~D~i~~~~vlh~  264 (359)
                      ..+++|||.|.|..++-++-.+|+.+++.+|. .   ..++.+..   -++++++.+.+++  ..+. ||+|++..+-  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            58999999999999999999999999999997 2   33444332   6789999998887  2335 9999998753  


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                          ....++.-+...+++   ||+++..-......                          -..+.+.....-|+++.+
T Consensus       146 ----~L~~l~e~~~pllk~---~g~~~~~k~~~~~~--------------------------e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         146 ----SLNVLLELCLPLLKV---GGGFLAYKGLAGKD--------------------------ELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             ----chHHHHHHHHHhccc---CCcchhhhHHhhhh--------------------------hHHHHHHHHHhhcCcEEE
Confidence                123456667777888   78766532211000                          234556667777888888


Q ss_pred             EEec
Q 043623          345 ITPL  348 (359)
Q Consensus       345 ~~~~  348 (359)
                      +...
T Consensus       193 ~~~~  196 (215)
T COG0357         193 VFSL  196 (215)
T ss_pred             EEEe
Confidence            8766

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.75  E-value=1.5e-05  Score=76.52  Aligned_cols=96  Identities=16%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec------hHHHhcCCCCCCceEEeCCC--CC-CCCC--ccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL------PHVIADLPETDNLKFIAGDM--NQ-SIPS--ADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~i~~a~~~~rv~~~~~d~--~~-~~~~--~D~i~~~~vl  262 (359)
                      ....+||||||+|.++..|.++  +  ++.+-.      +..++.|.+ ..|..+-+-+  .+ |+|+  ||+|-++.++
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r--~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~  191 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLER--N--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL  191 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhC--C--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccc
Confidence            3468999999999999999997  2  333332      223333332 2233333333  22 7774  9999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      ..|...+ ..+|-++-|+|+|   ||.+++..+-..
T Consensus       192 i~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~  223 (506)
T PF03141_consen  192 IPWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY  223 (506)
T ss_pred             ccchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence            9998765 3589999999999   999888766544

; GO: 0008168 methyltransferase activity

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00056  Score=57.03  Aligned_cols=68  Identities=16%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC--CCCccEEEecchh
Q 043623          195 LSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS--IPSADAFLFKLIF  262 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~--~~~~D~i~~~~vl  262 (359)
                      +.-++|||||+|..+..+++.. |+..+...|+ |++.+...+     .-++..+..|+.+.  ..+.|+++++--.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPY  120 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPY  120 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCc
Confidence            6889999999999999988764 7888999999 777665332     34466788888873  2458988887544

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00018  Score=64.29  Aligned_cols=91  Identities=21%  Similarity=0.327  Sum_probs=64.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCC-CCCC--c
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQ-SIPS--A  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~-~~~~--~  253 (359)
                      ..+++..+  ..++..|+|||+|.|.++..|+++...  ++++++ +..++..+    ..++++++.+|+.+ ++++  .
T Consensus        20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence            45666665  556789999999999999999999664  666666 44444443    36899999999999 7774  2


Q ss_pred             cEEEecchhccCChhHHHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKN  276 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~  276 (359)
                      -..+.++.-++.+-+-..++|..
T Consensus        96 ~~~vVaNlPY~Isspii~kll~~  118 (259)
T COG0030          96 PYKVVANLPYNISSPILFKLLEE  118 (259)
T ss_pred             CCEEEEcCCCcccHHHHHHHHhc
Confidence            23455566666666544444443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.73  E-value=0.00036  Score=62.84  Aligned_cols=135  Identities=17%  Similarity=0.153  Sum_probs=91.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HH------H-hc---CC---------------------------
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HV------I-AD---LP---------------------------  234 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~------i-~~---a~---------------------------  234 (359)
                      +...+||-=|||-|.++.++++.  +..+.+-|.. -|      + ..   ..                           
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            34579999999999999999998  4455555542 12      1 11   00                           


Q ss_pred             ---------CCCCceEEeCCCCC--CCC----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          235 ---------ETDNLKFIAGDMNQ--SIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       235 ---------~~~rv~~~~~d~~~--~~~----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                               ...++....|||.+  +.+    .+|+|+.++.+.--  +.+..+|..|.+.|||   ||.++=+-+..-.
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh  207 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKP---GGYWINFGPLLYH  207 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhcc---CCEEEecCCcccc
Confidence                     03468889999998  333    49999999777433  3378999999999999   8866655554333


Q ss_pred             CCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623          300 KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  347 (359)
                      .....             ......-+.+.+|+.++.++.||++.+-..
T Consensus       208 ~~~~~-------------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  208 FEPMS-------------IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCCC-------------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            22110             000112456899999999999999877554

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.70  E-value=5.1e-05  Score=64.75  Aligned_cols=89  Identities=17%  Similarity=0.281  Sum_probs=67.3

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCceEEeCCCCC-CCC-CccEEEecchhccCCh
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDD  267 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d  267 (359)
                      +++|||+|.|..++-++-.+|+.+++.+|. .   ..++.+..   -++++++.+.+++ ..+ .||+|++..+-    +
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence            899999999999999999999999999997 2   22332221   5689999998887 333 59999999763    2


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                        ...++.-+.+.+++   ||+++..-
T Consensus       127 --l~~l~~~~~~~l~~---~G~~l~~K  148 (184)
T PF02527_consen  127 --LDKLLELARPLLKP---GGRLLAYK  148 (184)
T ss_dssp             --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             --HHHHHHHHHHhcCC---CCEEEEEc
Confidence              34678888888999   89888764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.61  E-value=0.00017  Score=71.54  Aligned_cols=96  Identities=14%  Similarity=0.210  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC-C-----CCCCceEEeCCCCC---CCC--CccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL-P-----ETDNLKFIAGDMNQ---SIP--SADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a-~-----~~~rv~~~~~d~~~---~~~--~~D~i~~~~v  261 (359)
                      ....+||||||.|.++..+++.+|+..++|+|. ...+..+ +     .-.|+.++.+|+..   .++  +.|.|++.+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            456899999999999999999999999999998 3333222 1     14678888887642   344  3777766642


Q ss_pred             hccCChhH-------HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          262 FHDYDDEV-------CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       262 lh~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       --|+...       ...+|+.+.+.|+|   ||.|.+.
T Consensus       427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~  461 (506)
T PRK01544        427 -DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFA  461 (506)
T ss_pred             -CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEE
Confidence             1232211       24689999999999   8988764

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.59  E-value=0.00012  Score=64.82  Aligned_cols=67  Identities=15%  Similarity=0.340  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC----CCC----CccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ----SIP----SADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~----~~~----~~D~i  256 (359)
                      .....+||+|||+|..+..++...|+++++++|. +.++..+.+       .+++.++..+|..    +.+    ..|++
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence            3456899999999999999999999999999999 555554432       7888887555543    333    38888


Q ss_pred             Eec
Q 043623          257 LFK  259 (359)
Q Consensus       257 ~~~  259 (359)
                      +++
T Consensus       227 vsN  229 (328)
T KOG2904|consen  227 VSN  229 (328)
T ss_pred             ecC
Confidence            876

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.51  E-value=0.00025  Score=67.68  Aligned_cols=64  Identities=20%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-C-CCccEEEec
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-I-PSADAFLFK  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~-~~~D~i~~~  259 (359)
                      ++.+|||+|||+|.++..++..  ..+++++|. +.+++.+++      .++++|+.+|+.+  . . ..||+|++.
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            4579999999999999999864  468999998 777776653      3479999999865  1 2 349998886

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.50  E-value=4.8e-05  Score=68.05  Aligned_cols=136  Identities=15%  Similarity=0.223  Sum_probs=79.6

Q ss_pred             CCCeEEEEcCCchHHH-HHHHHHCCCCeEEEeec-hHHHhc----CCC------------------------------CC
Q 043623          194 GLSSLVEVGGGTGSFA-RIISEAFPSIKCSVLEL-PHVIAD----LPE------------------------------TD  237 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~-~~l~~~~p~~~~~~~D~-~~~i~~----a~~------------------------------~~  237 (359)
                      ++.++||||||.-.+- ...++.+.  +++..|. +.-.+.    .+.                              ..
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4579999999985442 22222222  4777776 333221    110                              12


Q ss_pred             Cce-EEeCCCCC--CC------CC-ccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch
Q 043623          238 NLK-FIAGDMNQ--SI------PS-ADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE  305 (359)
Q Consensus       238 rv~-~~~~d~~~--~~------~~-~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~  305 (359)
                      .|+ ++..|..+  |+      |+ ||++++..+|...  +.++-.+.++++.++|||   ||.+++........-... 
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~Y~vG-  209 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTYYMVG-  209 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SEEEET-
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCceeEEEC-
Confidence            243 56778876  22      33 9999999999664  455567899999999999   898888776432210000 


Q ss_pred             HHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623          306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       306 ~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  347 (359)
                          ..-|        ..-..+.+.+++.|+++||.+.+...
T Consensus       210 ----~~~F--------~~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  210 ----GHKF--------PCLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             ----TEEE--------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             ----CEec--------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence                0001        11123899999999999999988875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.47  E-value=0.0013  Score=59.51  Aligned_cols=144  Identities=15%  Similarity=0.151  Sum_probs=95.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCceEEeCCCCCCCC------C-----
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP---------ETDNLKFIAGDMNQSIP------S-----  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~---------~~~rv~~~~~d~~~~~~------~-----  252 (359)
                      .+...|+.+|||-=.....+... +++++.-+|+|++++.-+         ...+.+++..|+.+.+.      +     
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            34568999999988777776332 367888899998876422         25788999999874221      1     


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-HHHHHhhhhhhh-hcC---CcccC
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-EAKLLYDALMMT-CVP---GIERS  327 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---g~~~t  327 (359)
                      .=++++-.++.+++.+++.++|+.+.+...|   |+ .++.|...+-.. .. .. .......  ... ..+   -...+
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~~  230 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRPLDG-EW-RAGMRAPVYH--AARGVDGSGLVFGID  230 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccccch-hH-HHHHHHHHHH--hhhcccccccccCCC
Confidence            3477888999999999999999999998888   44 555666554111 10 10 0000010  010 001   11247


Q ss_pred             HHHHHHHHHhcCCceeeE
Q 043623          328 EKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~  345 (359)
                      .+++.++|++.||+....
T Consensus       231 ~~~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       231 RADVAEWLAERGWRASEH  248 (260)
T ss_pred             hhhHHHHHHHCCCeeecC
Confidence            899999999999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.46  E-value=0.0015  Score=55.08  Aligned_cols=138  Identities=16%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             ccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhc-----------CCC--CCCceEEeCCCCC-CCC-Ccc
Q 043623          191 IFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIAD-----------LPE--TDNLKFIAGDMNQ-SIP-SAD  254 (359)
Q Consensus       191 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~-----------a~~--~~rv~~~~~d~~~-~~~-~~D  254 (359)
                      +++++.+|+|+=.|.|.++.-+...- |.-++..+--.+...-           +++  ..+++.+..+... ..| ..|
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d  124 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD  124 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence            37889999999999999999988753 5444444332222111           111  3444544444444 222 377


Q ss_pred             EEEecchhccC-----ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHH
Q 043623          255 AFLFKLIFHDY-----DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEK  329 (359)
Q Consensus       255 ~i~~~~vlh~~-----~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~  329 (359)
                      +++....-|++     ....+.++.+.++++|||   ||.++|.|..........   .   ...++.        ++..
T Consensus       125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---d---t~~~~r--------i~~a  187 (238)
T COG4798         125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---D---TITLHR--------IDPA  187 (238)
T ss_pred             ccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---h---hhhhcc--------cChH
Confidence            77775544443     234467889999999999   999999888765544321   1   111111        2678


Q ss_pred             HHHHHHHhcCCceeeE
Q 043623          330 EWERLFFDAGFTSYKI  345 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~  345 (359)
                      ...+..+++||+...-
T Consensus       188 ~V~a~veaaGFkl~ae  203 (238)
T COG4798         188 VVIAEVEAAGFKLEAE  203 (238)
T ss_pred             HHHHHHHhhcceeeee
Confidence            8888999999997543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.45  E-value=0.0043  Score=57.49  Aligned_cols=129  Identities=11%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC--C-CCCccEEEecchhccCChh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ--S-IPSADAFLFKLIFHDYDDE  268 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~--~-~~~~D~i~~~~vlh~~~d~  268 (359)
                      +.++.++|||||++|.++..++++  +.+|+++|..++.......++|+...+|.+.  + ...+|.+++-.+..   + 
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P-  282 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P-  282 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence            357789999999999999999998  5599999987776667778999999999888  3 22489998877632   2 


Q ss_pred             HHHHHHHHHHHhcCCCCCC-ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc-eeeEE
Q 043623          269 VCLKLLKNCREAVASSDGR-EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT-SYKIT  346 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~-~~~~~  346 (359)
                        .++.+-+.++|..   | .+-.|+...++-...   +.....               ..+.+.+.|.++|.. ..++.
T Consensus       283 --~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~r---~~~v~~---------------~l~~i~~~l~~~g~~~~~~~k  339 (357)
T PRK11760        283 --ARVAELMAQWLVN---GWCREAIFNLKLPMKKR---YEEVRQ---------------CLELIEEQLDENGINAQIQAK  339 (357)
T ss_pred             --HHHHHHHHHHHhc---CcccEEEEEEEcCCCCC---HHHHHH---------------HHHHHHHHHHHcCCccceeee
Confidence              2567777778876   2 245566665543322   111110               234467778888873 34555


Q ss_pred             ecC
Q 043623          347 PLL  349 (359)
Q Consensus       347 ~~~  349 (359)
                      ++.
T Consensus       340 hLy  342 (357)
T PRK11760        340 QLY  342 (357)
T ss_pred             eee
Confidence            553

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.36  E-value=0.00055  Score=55.94  Aligned_cols=84  Identities=19%  Similarity=0.341  Sum_probs=58.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-C-CCCccE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-S-IPSADA  255 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~-~~~~D~  255 (359)
                      ..+..+|+|+|||.|+++..++..    .|+++++++|. +..++.+..         ..++++..++..+ . ....++
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            356789999999999999999982    28899999998 555544432         3567777776655 2 234777


Q ss_pred             EEecchhccCChhHHHHHHHHHHH
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCRE  279 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~  279 (359)
                      ++.-|..-+.++    .+|+...+
T Consensus       103 ~vgLHaCG~Ls~----~~l~~~~~  122 (141)
T PF13679_consen  103 LVGLHACGDLSD----RALRLFIR  122 (141)
T ss_pred             EEEeecccchHH----HHHHHHHH
Confidence            777777666655    34555544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.0016  Score=55.95  Aligned_cols=107  Identities=13%  Similarity=0.205  Sum_probs=75.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CC--------C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SI--------P  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~--------~  251 (359)
                      .+|.+++. .++++..|+|+|+-.|.++..+++.. ++.+++++|+.++-..    .+|.++.+|+.+ +.        +
T Consensus        34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHcC
Confidence            56666663 57889999999999999999888875 4456999998655443    449999999987 31        2


Q ss_pred             C--ccEEEecchh--------ccC-ChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          252 S--ADAFLFKLIF--------HDY-DDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       252 ~--~D~i~~~~vl--------h~~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      .  +|+|++-..-        +|. .-.-+...+.-+...|+|   ||.+++-.+-
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fq  161 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQ  161 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEe
Confidence            2  6999854322        221 223344567777889999   8888776653

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.32  E-value=7.9e-05  Score=63.19  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCCCccEEEecchhccCChhH
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEV  269 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~  269 (359)
                      ..+.++||+|.|.|..+..++..+.+  +.+-++ ..|..+.+. .-||--. .+-.+ .+ .+|+|.+.+.|....++ 
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~ynVl~~-~ew~~t~~-k~dli~clNlLDRc~~p-  185 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKNYNVLTE-IEWLQTDV-KLDLILCLNLLDRCFDP-  185 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcCCceeee-hhhhhcCc-eeehHHHHHHHHhhcCh-
Confidence            34689999999999999988776543  333344 345555543 2222110 01111 11 39999999999554443 


Q ss_pred             HHHHHHHHHHhcCCCCCCceEEEEeeecC-------CCCCCchHHHHHHHhhhhhhhhcCCccc--CHHHHHHHHHhcCC
Q 043623          270 CLKLLKNCREAVASSDGREKVIIVDIVVN-------EKKDKPEITEAKLLYDALMMTCVPGIER--SEKEWERLFFDAGF  340 (359)
Q Consensus       270 ~~~iL~~~~~~L~p~~~gG~lli~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~--t~~e~~~ll~~aGf  340 (359)
                       -++|+.++.+|+|+  .|++++.= ++|       +....+..+.       .++ ..+|+.+  ....+.++|+.+||
T Consensus       186 -~kLL~Di~~vl~ps--ngrvivaL-VLP~~hYVE~N~~g~~~rPd-------n~L-e~~Gr~~ee~v~~~~e~lr~~g~  253 (288)
T KOG3987|consen  186 -FKLLEDIHLVLAPS--NGRVIVAL-VLPYMHYVETNTSGLPLRPD-------NLL-ENNGRSFEEEVARFMELLRNCGY  253 (288)
T ss_pred             -HHHHHHHHHHhccC--CCcEEEEE-EecccceeecCCCCCcCCch-------HHH-HhcCccHHHHHHHHHHHHHhcCc
Confidence             48899999999995  67776531 111       1111110000       001 2234432  23467899999999


Q ss_pred             ceeeEEecC
Q 043623          341 TSYKITPLL  349 (359)
Q Consensus       341 ~~~~~~~~~  349 (359)
                      .+...+..|
T Consensus       254 ~veawTrlP  262 (288)
T KOG3987|consen  254 RVEAWTRLP  262 (288)
T ss_pred             hhhhhhcCC
Confidence            987777665

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.30  E-value=0.00051  Score=62.34  Aligned_cols=91  Identities=16%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCC-CCCC---
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQ-SIPS---  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~-~~~~---  252 (359)
                      ..+++.++  ..+...|+|||+|.|.++..|++..  -+++++|. +..++..+    ..++++++.+|+.+ ..+.   
T Consensus        20 ~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   20 DKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             HHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence            45666665  5678999999999999999999987  57888888 55554443    36899999999998 4443   


Q ss_pred             -ccEEEecchhccCChhHHHHHHHHHHHh
Q 043623          253 -ADAFLFKLIFHDYDDEVCLKLLKNCREA  280 (359)
Q Consensus       253 -~D~i~~~~vlh~~~d~~~~~iL~~~~~~  280 (359)
                       -...+.++.-++.+.    .++.++...
T Consensus        96 ~~~~~vv~NlPy~is~----~il~~ll~~  120 (262)
T PF00398_consen   96 NQPLLVVGNLPYNISS----PILRKLLEL  120 (262)
T ss_dssp             SSEEEEEEEETGTGHH----HHHHHHHHH
T ss_pred             CCceEEEEEecccchH----HHHHHHhhc
Confidence             345555665554443    456666553

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.28  E-value=0.00068  Score=64.74  Aligned_cols=90  Identities=13%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-CCCccEEEecchhcc
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-IPSADAFLFKLIFHD  264 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~~~~D~i~~~~vlh~  264 (359)
                      ..+|||++||+|.+++.+++..+..++++.|+ +.+++.+++      .+++++..+|...  . .+.||+|++.- .  
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence            46899999999999999998877568999999 777776653      3456688888765  2 23599998853 2  


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       ..  ...++..+.+.+++   ||.++|.
T Consensus       135 -Gs--~~~~l~~al~~~~~---~gilyvS  157 (382)
T PRK04338        135 -GS--PAPFLDSAIRSVKR---GGLLCVT  157 (382)
T ss_pred             -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence             22  13567777777898   8888887

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.21  E-value=0.00046  Score=58.49  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC------CCCceEEeCCCCCCCCC-ccEEEec
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-------DLPE------TDNLKFIAGDMNQSIPS-ADAFLFK  259 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-------~a~~------~~rv~~~~~d~~~~~~~-~D~i~~~  259 (359)
                      -.-+.|||||.|.++..++..+|+.-+.|+++ ..+.+       .++.      ..++.+...+.+.-.|. |.---++
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            35799999999999999999999999999998 33322       2221      45566666666653332 2212222


Q ss_pred             chhccCChhH-----------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          260 LIFHDYDDEV-----------CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       260 ~vlh~~~d~~-----------~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -.++.++|+.           ...++.+..-.|++   ||.++.+.-
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitD  184 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITD  184 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEee
Confidence            2222233322           23466777778898   888876543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.21  E-value=0.00028  Score=61.01  Aligned_cols=90  Identities=17%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CCCCccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SIPSADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~~~~D~i~~~~v  261 (359)
                      ..++..|+|.-||.|.++..+++..+..++++.|+ |.+++.+++       .++|..+.+|..+  +...+|-|+|...
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            35678999999999999999999777788999999 777655442       6789999999887  3234998888753


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceE
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKV  290 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~l  290 (359)
                      -      .+..+|..+.+.+++   ||.+
T Consensus       179 ~------~~~~fl~~~~~~~~~---~g~i  198 (200)
T PF02475_consen  179 E------SSLEFLDAALSLLKE---GGII  198 (200)
T ss_dssp             S------SGGGGHHHHHHHEEE---EEEE
T ss_pred             H------HHHHHHHHHHHHhcC---CcEE
Confidence            1      234678888888998   6544

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.19  E-value=0.00017  Score=48.00  Aligned_cols=46  Identities=26%  Similarity=0.539  Sum_probs=40.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +.|++.|..++++.|..|||+++|+   +..-+.|+|..|...|++.++
T Consensus         6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence            4577888776678899999999999   578999999999999999986

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.12  E-value=0.00036  Score=59.52  Aligned_cols=106  Identities=18%  Similarity=0.239  Sum_probs=62.1

Q ss_pred             HHHHHhcccccC--CCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC---------C
Q 043623          182 KLIIKDCKHIFD--GLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ---------S  249 (359)
Q Consensus       182 ~~l~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~---------~  249 (359)
                      .++.+.++ .++  +..+|||+||++|.++..++++. +..+++++|+...-.    ...+.++.+|+.+         -
T Consensus        10 ~ei~~~~~-~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~   84 (181)
T PF01728_consen   10 YEIDEKFK-IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKL   84 (181)
T ss_dssp             HHHHHTTS-SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGS
T ss_pred             HHHHHHCC-CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhh
Confidence            45556555 133  45899999999999999999987 678999999844311    1334444444432         0


Q ss_pred             C----CCccEEEecchhccC---------ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          250 I----PSADAFLFKLIFHDY---------DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       250 ~----~~~D~i~~~~vlh~~---------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .    ..+|+|++-.....-         ..+-+...|.-+.+.|+|   ||.+++--.
T Consensus        85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~~  140 (181)
T PF01728_consen   85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKVF  140 (181)
T ss_dssp             HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEES
T ss_pred             ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEec
Confidence            1    248988877632211         112234455556677899   887766443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.00084  Score=53.86  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--C-ccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--S-ADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~-~D~i~~~~vl  262 (359)
                      .++.++|+|||.|.++....- +.+-.++|+|+ |++++.+..     .-++.+.+.|+.++.+  + ||.++.+--+
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            468999999999999954433 23347999999 888887664     4556788888888433  3 8998888655

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.00054  Score=62.77  Aligned_cols=101  Identities=21%  Similarity=0.427  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCe-EEEeechHHHh----cCCC---CCCceEEeCCCCC---CCCCccEEEecchhc
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIK-CSVLELPHVIA----DLPE---TDNLKFIAGDMNQ---SIPSADAFLFKLIFH  263 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~i~----~a~~---~~rv~~~~~d~~~---~~~~~D~i~~~~vlh  263 (359)
                      +++|||||.|.|.-+.++-.-+|+++ ++.++....+.    ....   .....+...|+..   ++|..|.|.+..++|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            46799999999998888888889885 66666532222    1111   2223334444443   556555555544444


Q ss_pred             cC----ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          264 DY----DDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       264 ~~----~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      -+    +.......++++...+.|   ||.++|+|...+
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp  229 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP  229 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence            32    333344589999999999   999999997544

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.00027  Score=57.71  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCchHHHH-HHHHHCCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-----CCCCccEEEe
Q 043623          195 LSSLVEVGGGTGSFAR-IISEAFPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-----SIPSADAFLF  258 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~-~l~~~~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-----~~~~~D~i~~  258 (359)
                      +.+||++|+|--.++- .++..-|...|..-|- .+.+++.++         ..++..+..+...     ....||+|++
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            4789999999655554 4555667778888886 556655443         2333333333332     1124999999


Q ss_pred             cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +.++  +-++-...+.+.|+..|+|   .|+-++..+-
T Consensus       110 ADCl--FfdE~h~sLvdtIk~lL~p---~g~Al~fsPR  142 (201)
T KOG3201|consen  110 ADCL--FFDEHHESLVDTIKSLLRP---SGRALLFSPR  142 (201)
T ss_pred             ccch--hHHHHHHHHHHHHHHHhCc---ccceeEecCc
Confidence            9988  3456667899999999999   7886665553

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.05  E-value=0.0011  Score=55.61  Aligned_cols=95  Identities=16%  Similarity=0.292  Sum_probs=72.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCCccEEEecchhccCCh
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDD  267 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d  267 (359)
                      ..+.|+|.|+|-++.-.++.  --+++.++. |...+-+.+      ..+++++.+|..+ .+..+|+|+|-..=.-+=+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence            68999999999999877776  237888888 655555554      5789999999999 7877999988764333445


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ++-+.+++.+.+-|+.   .++++=.+.
T Consensus       112 E~qVpV~n~vleFLr~---d~tiiPq~v  136 (252)
T COG4076         112 EKQVPVINAVLEFLRY---DPTIIPQEV  136 (252)
T ss_pred             ccccHHHHHHHHHhhc---CCccccHHH
Confidence            5567889999998888   788775443

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.05  E-value=0.00024  Score=59.11  Aligned_cols=63  Identities=17%  Similarity=0.382  Sum_probs=45.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC---CC--C-ccEEEecc
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS---IP--S-ADAFLFKL  260 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~---~~--~-~D~i~~~~  260 (359)
                      ..|+|+.||.|..++.+++.+.  +++++|+ |..++.++.       .+||.++.+|+++.   ..  . +|+|+++=
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            3699999999999999999865  6999998 666665552       67999999999872   22  2 79998763

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.052  Score=46.36  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=98.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCCceEEeCCCCCCCC------CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P----HVIADLPETDNLKFIAGDMNQSIP------SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~i~~a~~~~rv~~~~~d~~~~~~------~~D~i~~~~  260 (359)
                      ++++.+||=+|..+|....++..--++-.+.+++. |    +.+..+++.+||-.+-+|+..|..      ..|+|+.-=
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV  153 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV  153 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence            78899999999999999999999888777888887 3    446667778999999999988632      478876532


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                         -.++ ++.-+..++..-||+   ||.+++.=-...-.....+.    ..               ..+-.+-|++.||
T Consensus       154 ---AQp~-Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp~----~v---------------f~~ev~kL~~~~f  207 (231)
T COG1889         154 ---AQPN-QAEILADNAEFFLKK---GGYVVIAIKARSIDVTADPE----EV---------------FKDEVEKLEEGGF  207 (231)
T ss_pred             ---CCch-HHHHHHHHHHHhccc---CCeEEEEEEeecccccCCHH----HH---------------HHHHHHHHHhcCc
Confidence               1333 455677888889999   78777654444433333211    11               2333455677899


Q ss_pred             ceeeEEecCCc---ceEEEEE
Q 043623          341 TSYKITPLLGL---RSFIEVY  358 (359)
Q Consensus       341 ~~~~~~~~~~~---~~~i~~~  358 (359)
                      ++.++..+..+   +.+|.++
T Consensus       208 ~i~e~~~LePye~DH~~i~~~  228 (231)
T COG1889         208 EILEVVDLEPYEKDHALIVAK  228 (231)
T ss_pred             eeeEEeccCCcccceEEEEEe
Confidence            99999988443   5566554

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.00  E-value=0.0029  Score=53.52  Aligned_cols=104  Identities=16%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchhccC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIFHDY  265 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~  265 (359)
                      .-.+++|||+|.|+|..++.-++.... .++..|+ |..+..++.     .-.|.++..|..-+-+.+|+++.+.++++.
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA~-~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~  155 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGAA-EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH  155 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhhH-HHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence            445789999999999999988886432 4555666 544444332     445667777766544469999999999765


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK  301 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~  301 (359)
                      +.  +.+++. ..+.++.+  |..++|.++..+.-.
T Consensus       156 ~~--a~~l~~-~~~~l~~~--g~~vlvgdp~R~~lp  186 (218)
T COG3897         156 TE--ADRLIP-WKDRLAEA--GAAVLVGDPGRAYLP  186 (218)
T ss_pred             hH--HHHHHH-HHHHHHhC--CCEEEEeCCCCCCCc
Confidence            54  446677 55656542  677888787766543

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.00  E-value=0.0055  Score=49.63  Aligned_cols=95  Identities=17%  Similarity=0.292  Sum_probs=63.5

Q ss_pred             EEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---ceEEeCCCCC---CCC---CccEEEecchhc
Q 043623          198 LVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-T--DN---LKFIAGDMNQ---SIP---SADAFLFKLIFH  263 (359)
Q Consensus       198 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-~--~r---v~~~~~d~~~---~~~---~~D~i~~~~vlh  263 (359)
                      ++|+|||+|... .+....+. ..++++|. +.++..++. .  ..   +.+..+|...   ++.   .+|++ .....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999977 44444333 47888888 555554322 1  11   5777777654   333   48999 554444


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      ++.+  ....+..+.+.++|   +|.+++.......
T Consensus       130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~  160 (257)
T COG0500         130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG  160 (257)
T ss_pred             hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence            4433  45789999999999   8988887776544

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.0083  Score=54.44  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-----hHH-Hh-------------------------cCCC--------
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-----PHV-IA-------------------------DLPE--------  235 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~-i~-------------------------~a~~--------  235 (359)
                      ..+||-=|||.|.++..++...+.+++--+..     ... +.                         +.+.        
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            56899999999999999999877765532111     110 10                         0110        


Q ss_pred             ------CCCceEEeCCCCC--CCC----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC
Q 043623          236 ------TDNLKFIAGDMNQ--SIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK  303 (359)
Q Consensus       236 ------~~rv~~~~~d~~~--~~~----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~  303 (359)
                            .+..+.-+|||.+  +.+    .+|+|+.++.+..-  ..+..+|..|...|+|   ||.++=+-+..-.....
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~  305 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKP---GGVWINLGPLLYHFEDT  305 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccC---CcEEEeccceeeeccCC
Confidence                  1223445689888  322    39999999766432  3368999999999999   88777666554433222


Q ss_pred             chHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      .         +.   ..-.+-+.+.+++..+.+.-||++.+-..+
T Consensus       306 ~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I  338 (369)
T KOG2798|consen  306 H---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI  338 (369)
T ss_pred             C---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence            1         00   011244568999999999999998876533

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.97  E-value=0.0025  Score=57.69  Aligned_cols=95  Identities=15%  Similarity=0.302  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCchHHHHH-HHHH-CCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC-C--CCCccEEEec
Q 043623          194 GLSSLVEVGGGTGSFARI-ISEA-FPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ-S--IPSADAFLFK  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~-~--~~~~D~i~~~  259 (359)
                      .+.+|+=||||.=-++.- +++. .++..++++|. +++++.+++        ..+++|+.+|..+ +  ..+||+|++.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            357999999997766554 4443 47788999999 777666542        7899999999876 3  4569999998


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      ...- ++.++-.++|.++.+.++|   |+.|++
T Consensus       200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~  228 (276)
T PF03059_consen  200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVV  228 (276)
T ss_dssp             TT-S-----SHHHHHHHHHHHS-T---TSEEEE
T ss_pred             hhcc-cccchHHHHHHHHHhhCCC---CcEEEE
Confidence            7653 3334457899999999999   665555

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.95  E-value=0.016  Score=50.17  Aligned_cols=118  Identities=12%  Similarity=0.162  Sum_probs=86.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC----CC---CCCceEEeCCCCCCCC---CccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL----PE---TDNLKFIAGDMNQSIP---SADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a----~~---~~rv~~~~~d~~~~~~---~~D~i~~~~vl  262 (359)
                      ...++.||||-++.+.+.+.+.+|...++..|+ +...+.|    .+   .++++...+|-+.++.   .+|+++...  
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG--   93 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG--   93 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence            455699999999999999999999999999998 4443333    22   7889999999887533   389998876  


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                        +.-.....||.+-.+.|+.   =-++++. +.      .                       ...+++++|.+.+|.+
T Consensus        94 --MGG~lI~~ILee~~~~l~~---~~rlILQ-Pn------~-----------------------~~~~LR~~L~~~~~~I  138 (226)
T COG2384          94 --MGGTLIREILEEGKEKLKG---VERLILQ-PN------I-----------------------HTYELREWLSANSYEI  138 (226)
T ss_pred             --CcHHHHHHHHHHhhhhhcC---cceEEEC-CC------C-----------------------CHHHHHHHHHhCCcee
Confidence              4556677888888888863   2244441 10      0                       4667788888888887


Q ss_pred             eeEEec
Q 043623          343 YKITPL  348 (359)
Q Consensus       343 ~~~~~~  348 (359)
                      ..=+-+
T Consensus       139 ~~E~il  144 (226)
T COG2384         139 KAETIL  144 (226)
T ss_pred             eeeeee
Confidence            665444

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.94  E-value=0.0062  Score=56.35  Aligned_cols=96  Identities=18%  Similarity=0.323  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCC---CCC-Cc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQ---SIP-SA  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~---~~~-~~  253 (359)
                      ++..+||-+|||-|.-++++.+ +|+ -+++.+|+ |.|++.++.             .+|++++..|.++   .-. .|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            5668999999999999999988 684 47999999 899988772             6899999999987   222 49


Q ss_pred             cEEEecchhccCChh-----HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          254 DAFLFKLIFHDYDDE-----VCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       254 D~i~~~~vlh~~~d~-----~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      |.++.-..  +-+.+     -..++.+-+++.|++   +|.+++..
T Consensus       367 D~vIVDl~--DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa  407 (508)
T COG4262         367 DVVIVDLP--DPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA  407 (508)
T ss_pred             cEEEEeCC--CCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence            98886532  11111     134567778889999   78777643

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.0062  Score=53.39  Aligned_cols=97  Identities=20%  Similarity=0.397  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCC----CeEEEeechH-HHhc-----CCCCCCce--EEeCCCCC---CCCC---cc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPS----IKCSVLELPH-VIAD-----LPETDNLK--FIAGDMNQ---SIPS---AD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~-~i~~-----a~~~~rv~--~~~~d~~~---~~~~---~D  254 (359)
                      .+....+|+|.|+..=+..+...+.+    ++++-+|+.. +++.     +++.+.++  -+++|+..   ..|.   -=
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl  156 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL  156 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence            45789999999999998888887766    7899999843 3322     22244444  46778765   2332   23


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .++....|-+++++++..+|.+++.+|+|   |-.+++
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~Ll  191 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLL  191 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEE
Confidence            45677899999999999999999999999   777776

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.85  E-value=0.024  Score=49.37  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-h----HHHhcCCCCCCceEEeCCCCCCC------CCccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-P----HVIADLPETDNLKFIAGDMNQSI------PSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~i~~a~~~~rv~~~~~d~~~~~------~~~D~i~~~  259 (359)
                      +.++.+||-+|..+|....++..-- |+-.+.+++. |    +.+..+++..||-.+-.|...|.      +..|+|+.-
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D  150 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD  150 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence            6788999999999999999998854 5778888887 5    44556667899999999998752      247887765


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      =.   .++ ++.-++.++..-||+   ||.++|.=-...-+...++   . .               ...+=.+-|++.|
T Consensus       151 Va---Qp~-Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p---~-~---------------vf~~e~~~L~~~~  204 (229)
T PF01269_consen  151 VA---QPD-QARIAALNARHFLKP---GGHLIISIKARSIDSTADP---E-E---------------VFAEEVKKLKEEG  204 (229)
T ss_dssp             -S---STT-HHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH---H-H---------------HHHHHHHHHHCTT
T ss_pred             CC---ChH-HHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH---H-H---------------HHHHHHHHHHHcC
Confidence            32   344 456678889899999   8988876433222111110   0 1               1233355677789


Q ss_pred             CceeeEEecCCc---ceEEEE
Q 043623          340 FTSYKITPLLGL---RSFIEV  357 (359)
Q Consensus       340 f~~~~~~~~~~~---~~~i~~  357 (359)
                      |+..+...+..+   +.++.+
T Consensus       205 ~~~~e~i~LePy~~dH~~vv~  225 (229)
T PF01269_consen  205 FKPLEQITLEPYERDHAMVVG  225 (229)
T ss_dssp             CEEEEEEE-TTTSTTEEEEEE
T ss_pred             CChheEeccCCCCCCcEEEEE
Confidence            999999988433   444444

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.79  E-value=0.0014  Score=61.91  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=79.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC--ccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS--ADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~--~D~i~~~~  260 (359)
                      ..+...++|+|||.|.....+.. +...+.++++. +..+.+...       .++-.++.+|+.+ ++++  ||.+.+..
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence            34556899999999999988876 45568888887 434433322       3444558889888 6664  99999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      +..|.++..  +++++++++++|   ||.+++.+.+....
T Consensus       187 ~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i~~~~  221 (364)
T KOG1269|consen  187 VVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWIKTAK  221 (364)
T ss_pred             ecccCCcHH--HHHHHHhcccCC---CceEEeHHHHHhhh
Confidence            999998864  779999999999   99998888776544

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.74  E-value=0.01  Score=58.08  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC-CccEEE--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP-SADAFL--  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~-~~D~i~--  257 (359)
                      ..++.+|||+++|.|.=+..++....+ ..++..|+ +.-+..+++      ..+|.+...|...   .++ .||.|+  
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            357789999999999999999998754 57899998 444433322      4667888888764   233 389998  


Q ss_pred             --ecc--hh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 --FKL--IF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 --~~~--vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                        |+.  ++       ..|+.+.+       .+||.++.+.|||   ||+|+-.
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYS  241 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYS  241 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence              432  22       22333322       5789999999999   8877544

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.64  E-value=0.0018  Score=48.35  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=47.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|...+++.|..+||+.+|+   +...+.+.|+.|...|++.....       ++.|++++.
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-------~~~y~l~~~   64 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-------NGRYRLGPK   64 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-------CCceeecHH
Confidence            4567777654368999999999999   57999999999999999998742       467999874

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.63  E-value=0.0014  Score=62.02  Aligned_cols=51  Identities=20%  Similarity=0.349  Sum_probs=42.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ  248 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~  248 (359)
                      .+|||++||+|.++..+++...  +++++|. +++++.+++      .++++++.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4799999999999999988763  8999998 778877664      3478899998865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.63  E-value=0.006  Score=56.11  Aligned_cols=79  Identities=15%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C-----
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S-----  249 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~-----  249 (359)
                      .+++..+.  ..++..++|.-+|.|..+..++++.|+.+++++|. |.+++.+++     .+|++++.+++.+ .     
T Consensus        10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~   87 (305)
T TIGR00006        10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE   87 (305)
T ss_pred             HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence            56666665  56678999999999999999999988899999999 778777654     4689999998875 1     


Q ss_pred             --CCCccEEEecchh
Q 043623          250 --IPSADAFLFKLIF  262 (359)
Q Consensus       250 --~~~~D~i~~~~vl  262 (359)
                        ...+|.|++---+
T Consensus        88 ~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        88 LLVTKIDGILVDLGV  102 (305)
T ss_pred             cCCCcccEEEEeccC
Confidence              1247777776543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.60  E-value=0.011  Score=52.60  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=74.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechH-H----HhcCCC---CCCceEEeCCCCC-CCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPH-V----IADLPE---TDNLKFIAGDMNQ-SIP  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~----i~~a~~---~~rv~~~~~d~~~-~~~  251 (359)
                      ..|+..++  ..++.+|++-|.|+|.++..+++.- |.-+..-+|..+ -    .+..++   .++|++...|... .++
T Consensus        95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            34566666  7899999999999999999999875 777888899833 2    222333   8999999999987 343


Q ss_pred             ----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          252 ----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       252 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                          .+|+|++-     ++.+.  ..+-.+.+.||.+  ||+++-..+++
T Consensus       173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~--g~r~csFSPCI  213 (314)
T KOG2915|consen  173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDE--GGRLCSFSPCI  213 (314)
T ss_pred             ccccccceEEEc-----CCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence                28998875     34332  3356666678872  56776655543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.58  E-value=0.0036  Score=55.38  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--CccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--SADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~  264 (359)
                      +.+.+|+|||||---++.......|+..++++|+ ...++....     ..+.++...|.....|  .+|+.++.-++|.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC  183 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence            4579999999999999998888888999999999 556655442     5677888889988433  4999999999998


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +..+.. ..--++-+.++-    -.++|.-+.
T Consensus       184 le~q~~-g~g~~ll~~~~~----~~~vVSfPt  210 (251)
T PF07091_consen  184 LERQRR-GAGLELLDALRS----PHVVVSFPT  210 (251)
T ss_dssp             HHHHST-THHHHHHHHSCE----SEEEEEEES
T ss_pred             HHHHhc-chHHHHHHHhCC----CeEEEeccc
Confidence            765543 233334455542    355554444

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.58  E-value=0.0028  Score=51.60  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ  248 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~  248 (359)
                      .++|||||.|.++..+++.+|+.+++++|. |.+.+.+++      ..+++++.....+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999999998 666665543      2457777766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.55  E-value=0.0012  Score=50.87  Aligned_cols=90  Identities=23%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             EEEcCCchHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCceEEeCCCCC---CCC--CccEEEecchhc
Q 043623          199 VEVGGGTGSFARIISEAFPSI---KCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ---SIP--SADAFLFKLIFH  263 (359)
Q Consensus       199 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh  263 (359)
                      ||||+..|..+..+++..+..   +++++|. +   ..-+..++   .++++++.++..+   .++  .+|+++.-. -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            689999999999988876554   5899998 4   23333332   6789999999876   232  589888775 22


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                        ..+.+..-+..+.+.|+|   ||.|++-|
T Consensus        80 --~~~~~~~dl~~~~~~l~~---ggviv~dD  105 (106)
T PF13578_consen   80 --SYEAVLRDLENALPRLAP---GGVIVFDD  105 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred             --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence              335567789999999999   77666544

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.55  E-value=0.0062  Score=51.86  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIK---------CSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--  251 (359)
                      .+++..|+|-=||+|.++++.+...++..         +++.|+ +.+++.++.       ...|.+...|+.+ +.+  
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence            45678999999999999999888777766         899999 777766543       5678999999998 633  


Q ss_pred             CccEEEecchhcc-CCh-hHH----HHHHHHHHHhcCC
Q 043623          252 SADAFLFKLIFHD-YDD-EVC----LKLLKNCREAVAS  283 (359)
Q Consensus       252 ~~D~i~~~~vlh~-~~d-~~~----~~iL~~~~~~L~p  283 (359)
                      .+|+|++.--.-. ... .+.    .++++.+.+.+++
T Consensus       106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen  106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            4899988754422 222 122    2456777778876

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=96.54  E-value=0.0033  Score=44.35  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             HHcCcccccccCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           36 VELGIPDIIHKRGR-PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        36 ~~lglf~~L~~~~~-~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .+-.|+..|...|+ +.|+.+||+.+|+   +...+++.|..|...|+|...+.      .++.|+++.
T Consensus         7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~------~~~~W~i~~   66 (68)
T smart00550        7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG------TPPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC------CCCceEeec
Confidence            44556777776544 3999999999999   57899999999999999998752      136788764

Helix-turn-helix-containing domain. Also known as Zab.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.51  E-value=0.0017  Score=61.75  Aligned_cols=51  Identities=22%  Similarity=0.355  Sum_probs=42.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ  248 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~  248 (359)
                      .+|||++||+|.++..+++...  +++++|. +.+++.+++      .++++++.+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999988754  7999998 777776654      3478999998865

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.49  E-value=0.0089  Score=55.08  Aligned_cols=146  Identities=17%  Similarity=0.225  Sum_probs=92.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCceEEeCCCCC-CCC------Cc---
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFP-SIKCSVLELPHVIADLPE---------TDNLKFIAGDMNQ-SIP------SA---  253 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~i~~a~~---------~~rv~~~~~d~~~-~~~------~~---  253 (359)
                      +...|+-+|||-=.-+-.+-  .| ++++.-+|+|++++.-++         ..+++++..|+++ +++      +|   
T Consensus        92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            36899999999544443332  23 578888899999875332         3489999999995 544      12   


Q ss_pred             --cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee-cCCCCCCch-HHHHHHHhhhhh-hhhcCCcccCH
Q 043623          254 --DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV-VNEKKDKPE-ITEAKLLYDALM-MTCVPGIERSE  328 (359)
Q Consensus       254 --D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~-~~~~~~~~~~~~-~~~~~g~~~t~  328 (359)
                        =++++-.++-+++.++..++|.+|...++|   |..+ +.+.. ......... ............ .....-.....
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  245 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRV-AFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDP  245 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceE-EEeccccHHHHhcccchhhhhhccccccccccceeccCCH
Confidence              467888999999999999999999999998   5544 44442 111111100 000000000000 00011122368


Q ss_pred             HHHHHHHHhcCCceeeE
Q 043623          329 KEWERLFFDAGFTSYKI  345 (359)
Q Consensus       329 ~e~~~ll~~aGf~~~~~  345 (359)
                      .+++.++.+.||.....
T Consensus       246 ~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         246 AEIETWLAERGWRSTLN  262 (297)
T ss_pred             HHHHHHHHhcCEEEEec
Confidence            99999999999998776

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.45  E-value=0.019  Score=49.36  Aligned_cols=99  Identities=15%  Similarity=0.218  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~~~~vl  262 (359)
                      .++.+||.||-|-|.....+.++.|..+++.---|.+.++.+.     .++|.+..|--.+   .++  .||-|+.--.=
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~  179 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS  179 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence            5789999999999999999999999877776545888877664     6788887764443   344  38988766431


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      -  .-++...+.+.+.+.|||   +|.+-.+...
T Consensus       180 e--~yEdl~~~hqh~~rLLkP---~gv~SyfNg~  208 (271)
T KOG1709|consen  180 E--LYEDLRHFHQHVVRLLKP---EGVFSYFNGL  208 (271)
T ss_pred             h--HHHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence            1  125677889999999999   8877665544

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.38  E-value=0.0085  Score=55.72  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC--CCC--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA-------FPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ--SIP--  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~--~~~--  251 (359)
                      ..+..+|+|-.||+|.++.++.+.       .+..++.|+|+ +.++..++.        .....+..+|.+.  ...  
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            345678999999999999998874       47789999999 555544331        3334588889876  232  


Q ss_pred             -CccEEEecchh--ccCCh-----------------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 -SADAFLFKLIF--HDYDD-----------------EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 -~~D~i~~~~vl--h~~~d-----------------~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                       .||+|+++--+  ..|.+                 ..-..++..+.+.|++   ||++.++=+
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp  184 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP  184 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence             49999987433  21111                 1112478889999999   898766543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.37  E-value=0.019  Score=53.52  Aligned_cols=98  Identities=17%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC-CCccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-PSADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-~~~D~i~~~~v  261 (359)
                      ..+.+|||.=+|.|.+++.+++...- +++.+|+ |.+++.+++       .++|+.+.||..+  +. +.||-|+|...
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            35899999999999999999997543 4999999 877765553       5668999999988  33 45999999875


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      -      .+.+++..+.+.+++   ||.+...+....+.
T Consensus       266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~  295 (341)
T COG2520         266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD  295 (341)
T ss_pred             C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence            3      234678888888998   88888887765554

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.33  E-value=0.012  Score=50.82  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCchHHHH---HHHHHC-CCCeEEEeech--HHHhcCCC----CCCceEEeCCCCCC-----C------CC
Q 043623          194 GLSSLVEVGGGTGSFAR---IISEAF-PSIKCSVLELP--HVIADLPE----TDNLKFIAGDMNQS-----I------PS  252 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~---~l~~~~-p~~~~~~~D~~--~~i~~a~~----~~rv~~~~~d~~~~-----~------~~  252 (359)
                      ++..|+++|--.|+-+.   .+++.. ++.+++++|+.  ..-..+.+    .+||+++.||-.++     .      +.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            36899999966665555   445555 78899999982  22222323    59999999998762     1      11


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      ..+|+.- .=|.+..  +.+.|+.....+++   |+.++|-|....
T Consensus       112 ~vlVilD-s~H~~~h--vl~eL~~y~plv~~---G~Y~IVeDt~~~  151 (206)
T PF04989_consen  112 PVLVILD-SSHTHEH--VLAELEAYAPLVSP---GSYLIVEDTIIE  151 (206)
T ss_dssp             SEEEEES-S----SS--HHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred             ceEEEEC-CCccHHH--HHHHHHHhCccCCC---CCEEEEEecccc
Confidence            3344443 3333333  56778889999999   888888777543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.33  E-value=0.007  Score=55.24  Aligned_cols=98  Identities=21%  Similarity=0.361  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC----------------
Q 043623          195 LSSLVEVGGGTGSFARIISEAF--------------------PSIKCSVLEL---PHVIADLPE----------------  235 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~i~~a~~----------------  235 (359)
                      ..+||-||||.|.-..+++..+                    +.++++.+|+   ..++.....                
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            4799999999998777776654                    2368999998   345543211                


Q ss_pred             -------CCCceEEeCCCCC-CC---------CCccEEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          236 -------TDNLKFIAGDMNQ-SI---------PSADAFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       236 -------~~rv~~~~~d~~~-~~---------~~~D~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                             .-+++|...|++. ..         +..++|.+.++++-   -+..+..++|.++-..++|   |..++|+|.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence                   2357889999987 22         13688888877754   2566678999999999999   888889875

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.32  E-value=0.023  Score=47.79  Aligned_cols=97  Identities=16%  Similarity=0.277  Sum_probs=59.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeC-CCCCC---------CC--CccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAG-DMNQS---------IP--SADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~-d~~~~---------~~--~~D~i~~  258 (359)
                      +++..+|||+||..|.++.-..++. |+..+.++|+-....    ...+.++.+ |+.+|         .|  ..|+|++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS  142 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS  142 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence            5788999999999999998766654 999999999843322    233444444 44432         23  2677765


Q ss_pred             cch--------h-ccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          259 KLI--------F-HDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       259 ~~v--------l-h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -..        + |...-+-|..+|.-+...++|   +|.+++--+
T Consensus       143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w  185 (232)
T KOG4589|consen  143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW  185 (232)
T ss_pred             ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence            432        1 111233344455555556677   776665433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.31  E-value=0.025  Score=58.58  Aligned_cols=100  Identities=12%  Similarity=0.163  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC----C--------------------------------------CCeEEEeec-hHH
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF----P--------------------------------------SIKCSVLEL-PHV  229 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~----p--------------------------------------~~~~~~~D~-~~~  229 (359)
                      .+...++|-.||+|.++++.+...    |                                      ..+++++|+ +.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            456899999999999999876531    1                                      236899998 778


Q ss_pred             HhcCCC-------CCCceEEeCCCCC-CCC----CccEEEecchhc-cCC-hhHHHHHHHHHHHhcC---CCCCCceEEE
Q 043623          230 IADLPE-------TDNLKFIAGDMNQ-SIP----SADAFLFKLIFH-DYD-DEVCLKLLKNCREAVA---SSDGREKVII  292 (359)
Q Consensus       230 i~~a~~-------~~rv~~~~~d~~~-~~~----~~D~i~~~~vlh-~~~-d~~~~~iL~~~~~~L~---p~~~gG~lli  292 (359)
                      ++.++.       .++|++..+|+.+ +.+    .+|+|+++--.- .+. ..+...+.+.+.+.++   +   |+++++
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l  345 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL  345 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence            876664       5678999999987 322    399998884331 222 2334455555555554   6   788776


Q ss_pred             Eee
Q 043623          293 VDI  295 (359)
Q Consensus       293 ~e~  295 (359)
                      +..
T Consensus       346 lt~  348 (702)
T PRK11783        346 FSS  348 (702)
T ss_pred             EeC
Confidence            543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.25  E-value=0.0072  Score=51.65  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-------CCCccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-------IPSADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-------~~~~D~i~~  258 (359)
                      .+.++||+=||||.++.+.+.+... +++.+|. +..+..+++       .++++++..|.+..       ...||+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            4789999999999999998888644 7999998 555554443       45788999997651       124999988


Q ss_pred             cchhccCChhHHHHHHHHHH--HhcCCCCCCceEEEEeeecC
Q 043623          259 KLIFHDYDDEVCLKLLKNCR--EAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~--~~L~p~~~gG~lli~e~~~~  298 (359)
                      -=-. ..... ..+++..+.  ..|++    +.++|+|....
T Consensus       121 DPPY-~~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~  156 (183)
T PF03602_consen  121 DPPY-AKGLY-YEELLELLAENNLLNE----DGLIIIEHSKK  156 (183)
T ss_dssp             --ST-TSCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred             CCCc-ccchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence            7433 33321 245666665  67888    56778887655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.24  E-value=0.073  Score=49.52  Aligned_cols=99  Identities=10%  Similarity=0.117  Sum_probs=73.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeC-CCCC-CCCC--ccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAG-DMNQ-SIPS--ADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~-d~~~-~~~~--~D~i~~~~  260 (359)
                      ..++..|||==||||.++++..-.  +++++|.|+ ..+++.++.      -....+... |+.. |+++  +|+|++--
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            456789999999999999998776  779999999 568887764      133434444 8887 7775  99998753


Q ss_pred             hhcc------CC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          261 IFHD------YD-DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       261 vlh~------~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -.--      .. ++-..++|..+++.|++   ||++++.-+
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p  311 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP  311 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence            2211      11 33456889999999999   898887655

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.23  E-value=0.014  Score=58.41  Aligned_cols=67  Identities=7%  Similarity=0.093  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-------C-C
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPS--------IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-------S-I  250 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-------~-~  250 (359)
                      ...+|+|.|||+|.++..++++.+.        ..++++|+ +.++..++.      ...+.+...|+..       . .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4569999999999999999887642        56789998 556554432      1234555555443       1 1


Q ss_pred             CCccEEEecc
Q 043623          251 PSADAFLFKL  260 (359)
Q Consensus       251 ~~~D~i~~~~  260 (359)
                      +.||+|+.+=
T Consensus       111 ~~fD~IIgNP  120 (524)
T TIGR02987       111 DLFDIVITNP  120 (524)
T ss_pred             CcccEEEeCC
Confidence            2499999873

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.04  E-value=0.0053  Score=55.09  Aligned_cols=57  Identities=21%  Similarity=0.394  Sum_probs=47.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|...+.+.+..|||+++|+|   ..-+.|+|..|+..|++.+++.       ++.|++++.
T Consensus         7 l~iL~~l~~~~~~l~l~ela~~~glp---ksT~~RlL~tL~~~G~v~~d~~-------~g~Y~Lg~~   63 (246)
T COG1414           7 LAILDLLAEGPGGLSLAELAERLGLP---KSTVHRLLQTLVELGYVEQDPE-------DGRYRLGPR   63 (246)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHhCcC---HHHHHHHHHHHHHCCCEEEcCC-------CCcEeehHH
Confidence            45677776533456799999999994   6899999999999999999973       468999985

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=95.99  E-value=0.0036  Score=40.61  Aligned_cols=44  Identities=20%  Similarity=0.440  Sum_probs=38.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST   85 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~   85 (359)
                      ++.|...|.+  +|.++.|||+.+++   ++..+.+-|+.|...|+++.
T Consensus         4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~   47 (47)
T PF01022_consen    4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK   47 (47)
T ss_dssp             HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence            4566777876  89999999999999   68999999999999999874

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>PRK11569 transcriptional repressor IclR; Provisional

Probab=95.87  E-value=0.0073  Score=55.17  Aligned_cols=58  Identities=17%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      +.|++.|.+.+++.|..|||+.+|+   +..-+.|+|..|...|+|.+++.       .+.|++++..
T Consensus        31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~l   88 (274)
T PRK11569         31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-------LGHWAIGAHA   88 (274)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCeEecCHHH
Confidence            4456666554478999999999999   46899999999999999998753       5889998753

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=95.86  E-value=0.0046  Score=42.56  Aligned_cols=54  Identities=19%  Similarity=0.344  Sum_probs=44.3

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .+|.--.++.|+..|.. ++|.|+.+||+.+|+   ++..+.+-|+.|...|+|+...
T Consensus         5 ~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~   58 (61)
T PF12840_consen    5 KALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER   58 (61)
T ss_dssp             HHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence            44455567778888833 389999999999999   5789999999999999999875

...

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=95.79  E-value=0.0086  Score=54.61  Aligned_cols=57  Identities=12%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|..++++.|+.|||+++|++   ...+.|+|..|...|+|.+++.       .+.|++++.
T Consensus        28 l~IL~~~~~~~~~~tl~eIa~~lglp---kStv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~   84 (271)
T PRK10163         28 IAILQYLEKSGGSSSVSDISLNLDLP---LSTTFRLLKVLQAADFVYQDSQ-------LGWWHIGLG   84 (271)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEEcCC-------CCeEEecHH
Confidence            44566665544689999999999994   6899999999999999998753       578999974

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=95.78  E-value=0.0083  Score=53.94  Aligned_cols=55  Identities=20%  Similarity=0.330  Sum_probs=46.6

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|..+++|.|+.|||+++|++   ..-+.|+|..|...|+|.++         ++.|++++.
T Consensus        12 l~IL~~l~~~~~~~~l~eia~~lglp---ksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~   66 (248)
T TIGR02431        12 LAVIEAFGAERPRLTLTDVAEATGLT---RAAARRFLLTLVELGYVTSD---------GRLFWLTPR   66 (248)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEeC---------CCEEEecHH
Confidence            45667776545789999999999994   68999999999999999976         378999985

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.73  E-value=0.03  Score=53.36  Aligned_cols=90  Identities=10%  Similarity=0.158  Sum_probs=68.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CC--CCccEEEecchhc
Q 043623          196 SSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SI--PSADAFLFKLIFH  263 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~--~~~D~i~~~~vlh  263 (359)
                      .+|||.-||+|..+++++.+.++ -++++.|+ |++++.+++      ..+++++.+|...  ..  ..||+|.+-- + 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            58999999999999999998654 37999999 777766553      3457888888876  21  2499998854 3 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      ..+    ..++..+.+.+++   ||.|.|.-
T Consensus       124 Gs~----~~fld~al~~~~~---~glL~vTa  147 (374)
T TIGR00308       124 GTP----APFVDSAIQASAE---RGLLLVTA  147 (374)
T ss_pred             CCc----HHHHHHHHHhccc---CCEEEEEe
Confidence            222    2578888888888   88888874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=95.69  E-value=0.016  Score=42.61  Aligned_cols=47  Identities=23%  Similarity=0.521  Sum_probs=38.5

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.|.++||+++++   ++..++++++.|...|+++...      |-+|.|.++..
T Consensus        24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~------G~~GGy~L~~~   70 (83)
T PF02082_consen   24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR------GRGGGYRLARP   70 (83)
T ss_dssp             C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET------STTSEEEESS-
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC------CCCCceeecCC
Confidence            56999999999999   5899999999999999998774      12478988764

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=95.64  E-value=0.056  Score=37.52  Aligned_cols=44  Identities=23%  Similarity=0.437  Sum_probs=39.1

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .+.|..+||+.+|+   +...+.+.|+.|...|++....        .+.|.++|
T Consensus        24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~--------~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG--------RGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC--------CCeEEeCC
Confidence            68999999999999   6899999999999999999885        36788764

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.069  Score=48.61  Aligned_cols=146  Identities=13%  Similarity=0.184  Sum_probs=100.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeechHHHhcCC----C------------------------CCCceE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLELPHVIADLP----E------------------------TDNLKF  241 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~i~~a~----~------------------------~~rv~~  241 (359)
                      ......|+.+|||.-.+...+...+  +.++++-+|.|+++.+--    +                        +++...
T Consensus        85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            4567899999999999999999887  788999999987754311    0                        344455


Q ss_pred             EeCCCCC--CC----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH
Q 043623          242 IAGDMNQ--SI----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE  308 (359)
Q Consensus       242 ~~~d~~~--~~----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~  308 (359)
                      +..|..+  .+          .+ .=+++.--+|..+.+++...+++-+...++.    +.+++.|.+.+....      
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~F------  234 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRF------  234 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChH------
Confidence            5555553  10          01 3455666788889999999999999999875    889999999855421      


Q ss_pred             HHHHhhhhhhhh---cC--CcccCHHHHHHHHHhcCCceeeEEec
Q 043623          309 AKLLYDALMMTC---VP--GIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       309 ~~~~~~~~~~~~---~~--g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                       ...+--++...   ..  -...|.+..++=|.++||..+.+..+
T Consensus       235 -g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm  278 (335)
T KOG2918|consen  235 -GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM  278 (335)
T ss_pred             -HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence             11111111100   01  12347888888899999999888765

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=95.58  E-value=0.011  Score=53.77  Aligned_cols=62  Identities=18%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.|++.|..++++.|..|||+++|+   +...+.|+|+.|...|+|.++..       ++.|++++....|.
T Consensus        14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-------~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-------DDSFRLTLKVRQLS   75 (263)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-------CCcEEEcHHHHHHH
Confidence            4566666554467999999999999   57899999999999999998752       47899998644333

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.56  E-value=0.039  Score=48.08  Aligned_cols=100  Identities=14%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHh-------cCCCCCCceEEeCCCCCCC---------CCc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIA-------DLPETDNLKFIAGDMNQSI---------PSA  253 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~-------~a~~~~rv~~~~~d~~~~~---------~~~  253 (359)
                      +-++++++|||.=||.-+..++.+.|. .+++.+|+ ++..+       .|.-...|+++.++..+.+         ..|
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            345799999999999999999998875 58999998 33333       3333788999999887621         238


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      |.++.-    +|.+. -...+.++-+.+++   ||.|++-...++.
T Consensus       151 DfaFvD----adK~n-Y~~y~e~~l~Llr~---GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  151 DFAFVD----ADKDN-YSNYYERLLRLLRV---GGVIVVDNVLWPG  188 (237)
T ss_pred             eEEEEc----cchHH-HHHHHHHHHhhccc---ccEEEEeccccCC
Confidence            888765    34444 34889999999999   6655554434444

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=95.56  E-value=0.0081  Score=43.51  Aligned_cols=57  Identities=21%  Similarity=0.377  Sum_probs=42.6

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .|+..+..  ++.+..+|+..+++   +...+.+.|+.|...|++...         ++.|++|+.|.-+.
T Consensus        10 ~IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   10 DILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFL   66 (77)
T ss_dssp             HHHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred             HHHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence            34455543  78999999999999   689999999999999999775         48999999988443

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=95.47  E-value=0.011  Score=41.41  Aligned_cols=59  Identities=17%  Similarity=0.356  Sum_probs=45.4

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCC--CcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPN--KRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~--~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      |++.|.++++|++..+|++.+....-  ++..+++.|++|...|++.+.+        .+.+.+|+.|.
T Consensus         3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g--------~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG--------RQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC--------CcccccCHHHH
Confidence            45667666799999999999866421  3488999999999999877665        45667887654

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=95.47  E-value=0.013  Score=52.91  Aligned_cols=57  Identities=19%  Similarity=0.397  Sum_probs=46.5

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      +.|++.|..+ ++.|+.|||+++|++   ..-+.|+|+.|...|+|.++..       ++.|++++..
T Consensus        17 l~IL~~l~~~-~~l~l~eia~~lgl~---kstv~Rll~tL~~~G~l~~~~~-------~~~Y~lG~~~   73 (257)
T PRK15090         17 FGILQALGEE-REIGITELSQRVMMS---KSTVYRFLQTMKTLGYVAQEGE-------SEKYSLTLKL   73 (257)
T ss_pred             HHHHHHhhcC-CCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEEcCC-------CCcEEecHHH
Confidence            3455556553 689999999999994   6899999999999999998742       5789999853

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.40  E-value=0.028  Score=53.64  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCC----CC---CccEEE
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQS----IP---SADAFL  257 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~----~~---~~D~i~  257 (359)
                      .+++|||+=|=||.++...+..... ++|.+|+ ..+++.+++        .+++.|+.+|.++-    ..   .||+|+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~-~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGAS-EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCC-ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            3899999999999999999886332 8999999 567776654        57789999999972    11   499998


Q ss_pred             ecc-hhcc-----CC-hhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          258 FKL-IFHD-----YD-DEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       258 ~~~-vlh~-----~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +-= .+-.     |+ ..+-..++..+.+.|+|   ||.++++...
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~  338 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCS  338 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence            742 1100     11 22245788899999999   8888876553

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=95.38  E-value=0.037  Score=46.34  Aligned_cols=61  Identities=15%  Similarity=0.323  Sum_probs=45.4

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .+|++.+.+. |.  .. ++++|+++||+++++   ++..+.++|..|...|||....      |.+|.|++..
T Consensus         9 yAl~~l~~lA-~~--~~-~~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~r------G~~GGy~Lar   69 (164)
T PRK10857          9 YAVTAMLDVA-LN--SE-AGPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVR------GPGGGYLLGK   69 (164)
T ss_pred             HHHHHHHHHH-hC--CC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC------CCCCCeeccC
Confidence            3455555554 21  21 368999999999999   4799999999999999999763      1246788864

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=95.37  E-value=0.017  Score=45.32  Aligned_cols=68  Identities=22%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           27 MSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      -.+.+|.--.++.|+..|... ++.++.+|++.+++   .+..+.+-|+.|...|+|.....     |-.-.|++.+
T Consensus         8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~-----Gr~~~Y~l~~   75 (117)
T PRK10141          8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQ-----GKWVHYRLSP   75 (117)
T ss_pred             HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE-----cCEEEEEECc
Confidence            445666677788888888642 68999999999999   57899999999999999998862     1122477765

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.33  E-value=0.1  Score=45.80  Aligned_cols=148  Identities=8%  Similarity=0.085  Sum_probs=90.8

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCceEEeC-CCCCC----CC-Ccc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL--PHVIADLPETDNLKFIAG-DMNQS----IP-SAD  254 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~i~~a~~~~rv~~~~~-d~~~~----~~-~~D  254 (359)
                      ..++.++ ...++..+||||.-||.++..++++... +++++|.  .+..-..+..+||..+.. |+..-    +. ..|
T Consensus        69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d  146 (245)
T COG1189          69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD  146 (245)
T ss_pred             HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCCc-EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence            4455554 2356789999999999999999997543 7899998  455556666788876655 44331    11 256


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE-EeeecCCCCCCchHHHHHHHhhhh-hhhhcCCcccCHHHHH
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII-VDIVVNEKKDKPEITEAKLLYDAL-MMTCVPGIERSEKEWE  332 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli-~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~e~~  332 (359)
                      ++++--.+     -....+|..+...++|   ++-++. +-+-..-..         ...... ..........-..++.
T Consensus       147 ~~v~DvSF-----ISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr---------~~v~kkGvv~d~~~~~~v~~~i~  209 (245)
T COG1189         147 LIVIDVSF-----ISLKLILPALLLLLKD---GGDLVLLVKPQFEAGR---------EQVGKKGVVRDPKLHAEVLSKIE  209 (245)
T ss_pred             eEEEEeeh-----hhHHHHHHHHHHhcCC---CceEEEEecchhhhhh---------hhcCcCceecCcchHHHHHHHHH
Confidence            66665433     2245789999999998   665543 222111110         000000 0000112223467889


Q ss_pred             HHHHhcCCceeeEEecC
Q 043623          333 RLFFDAGFTSYKITPLL  349 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~~  349 (359)
                      +++++.||++..+.+.+
T Consensus       210 ~~~~~~g~~~~gl~~Sp  226 (245)
T COG1189         210 NFAKELGFQVKGLIKSP  226 (245)
T ss_pred             HHHhhcCcEEeeeEccC
Confidence            99999999999988763

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.23  E-value=0.033  Score=51.30  Aligned_cols=65  Identities=20%  Similarity=0.314  Sum_probs=49.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ  248 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~  248 (359)
                      .+++..+.  ..++..++|.--|.|+++..+++++|+.+++++|. |.+++.+++     .+|+.++.++|.+
T Consensus        10 ~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen   10 KEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            56677665  56778999999999999999999999999999999 788866543     6889999888765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.20  E-value=0.017  Score=47.09  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=36.7

Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +.|+|.+.+++.|+.-++-...++.+++.|||   ||+|-|.-
T Consensus        47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAv   86 (185)
T COG4627          47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAV   86 (185)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEc
Confidence            49999999999999988889999999999999   99998863

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=95.18  E-value=0.017  Score=40.40  Aligned_cols=53  Identities=23%  Similarity=0.472  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      +++.+..+||+.+++   +...+.+.++.|...|+|++....  .|.-...|++|+.|
T Consensus        16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~--~d~R~~~~~LT~~G   68 (68)
T PF13463_consen   16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDP--HDKRSKRYRLTPAG   68 (68)
T ss_dssp             TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEES--SCTTSEEEEE-HHH
T ss_pred             CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCC--CcCCeeEEEeCCCC
Confidence            389999999999999   689999999999999999877520  11112468888754

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.15  E-value=0.039  Score=35.47  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=32.8

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      -+.|..+||+.+++   +...+.+.|+.|...|++....
T Consensus         7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~~   42 (48)
T smart00419        7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISREG   42 (48)
T ss_pred             eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence            47899999999999   6799999999999999998774

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.09  E-value=0.29  Score=43.21  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC-----CccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP-----SADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~-----~~D~i~~~~vl  262 (359)
                      .+++||=||-.- ..+++++...+..+++++|+ +..++-.++     .-+|+.+..|+..++|     .||+++.-=. 
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-  121 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP-  121 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence            468999999544 34444555555669999999 445544332     4459999999999766     3999987642 


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                        ++.+.+.-++.+..++||.  +|+..++ -....+.  ..   .                  ...++++.+.+.||.+
T Consensus       122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy~-~~~~~~~--s~---~------------------~~~~~Q~~l~~~gl~i  173 (243)
T PF01861_consen  122 --YTPEGLKLFLSRGIEALKG--EGCAGYF-GFTHKEA--SP---D------------------KWLEVQRFLLEMGLVI  173 (243)
T ss_dssp             --SSHHHHHHHHHHHHHTB-S--TT-EEEE-EE-TTT----H---H------------------HHHHHHHHHHTS--EE
T ss_pred             --CCHHHHHHHHHHHHHHhCC--CCceEEE-EEecCcC--cH---H------------------HHHHHHHHHHHCCcCH
Confidence              4567777899999999987  2444333 2222111  00   0                  1234567777888888


Q ss_pred             eeEEec
Q 043623          343 YKITPL  348 (359)
Q Consensus       343 ~~~~~~  348 (359)
                      .++.+-
T Consensus       174 ~dii~~  179 (243)
T PF01861_consen  174 TDIIPD  179 (243)
T ss_dssp             EEEEEE
T ss_pred             HHHHhh
Confidence            777664

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=94.95  E-value=0.0084  Score=42.19  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +..++..|-.. ++.|+++||+.+|+   +...+.+.|+-|...|++...+
T Consensus        10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~   56 (68)
T PF01978_consen   10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE   56 (68)
T ss_dssp             HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence            33445555332 89999999999999   6899999999999999999986

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PHA00738 putative HTH transcription regulator

Probab=94.86  E-value=0.028  Score=42.86  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=48.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      .++.|+..|.. +++.++.+|++.+++   ++..+.+-|+.|...|+|.....     |-.-.|++.+..
T Consensus        13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~-----Gr~vyY~Ln~~~   73 (108)
T PHA00738         13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE-----GRTLYAKIRENS   73 (108)
T ss_pred             HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE-----CCEEEEEECCCc
Confidence            46778888876 347999999999999   78999999999999999998863     112357777643

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=94.86  E-value=0.02  Score=37.16  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=36.5

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCcee
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFS   84 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~   84 (359)
                      +..|+..|.+. ++.|..|||+.+|+   +...+.+.|+-|...|+++
T Consensus         5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence            45677778774 67999999999999   6899999999999999974

...

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=94.83  E-value=0.45  Score=43.73  Aligned_cols=75  Identities=12%  Similarity=0.231  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeC----CCCCCC--C--CccEE
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAG----DMNQSI--P--SADAF  256 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~----d~~~~~--~--~~D~i  256 (359)
                      ...++||||+|....=--|..+..++++++.|+ +..++.|++        .++|+++..    +++...  +  .||..
T Consensus       102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            357899999999855333333334899999999 667766653        678888655    344422  1  39999


Q ss_pred             EecchhccCChh
Q 043623          257 LFKLIFHDYDDE  268 (359)
Q Consensus       257 ~~~~vlh~~~d~  268 (359)
                      +|+--+|.-.++
T Consensus       182 mCNPPFy~s~~e  193 (299)
T PF05971_consen  182 MCNPPFYSSQEE  193 (299)
T ss_dssp             EE-----SS---
T ss_pred             ecCCccccChhh
Confidence            988777764443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.72  E-value=1.2  Score=42.42  Aligned_cols=73  Identities=22%  Similarity=0.276  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHH--------H-------CCCCeEEEeechH-----HHhcCCC---------------CCC
Q 043623          194 GLSSLVEVGGGTGSFARIISE--------A-------FPSIKCSVLELPH-----VIADLPE---------------TDN  238 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~-----~i~~a~~---------------~~r  238 (359)
                      +..+|+|+|||+|.++..+..        +       -|.+++..=|+|.     .......               ..+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            367899999999977655422        2       2567888888752     1111110               112


Q ss_pred             ---ceEEeCCCCC-CCC--CccEEEecchhccCC
Q 043623          239 ---LKFIAGDMNQ-SIP--SADAFLFKLIFHDYD  266 (359)
Q Consensus       239 ---v~~~~~d~~~-~~~--~~D~i~~~~vlh~~~  266 (359)
                         +.-+.|.|.. -+|  +.+++++++.||-.+
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence               2235578887 466  389999999998654

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=94.69  E-value=0.032  Score=38.34  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |.+.|....+|.+..|||+.+|+   +...++++|..|...|.+...+
T Consensus         5 Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~   49 (62)
T PF04703_consen    5 ILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP   49 (62)
T ss_dssp             HHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            34444442389999999999999   6899999999999999998764

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.61  E-value=0.3  Score=45.62  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=65.1

Q ss_pred             cCCCCeEEEEcC-CchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCC---CCCCCCC-ccEEEecchhccC
Q 043623          192 FDGLSSLVEVGG-GTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGD---MNQSIPS-ADAFLFKLIFHDY  265 (359)
Q Consensus       192 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d---~~~~~~~-~D~i~~~~vlh~~  265 (359)
                      ..++.+|+-+|. |-|.++..++++.- .+++++|. ++-.+.+++-..-.++...   ..+.... ||+++..-.    
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----  238 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----  238 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence            677889888884 56789999999766 89999999 5666666664444455433   2222332 898887753    


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                       +    ..+....+.|++   ||+++++-...
T Consensus       239 -~----~~~~~~l~~l~~---~G~~v~vG~~~  262 (339)
T COG1064         239 -P----ATLEPSLKALRR---GGTLVLVGLPG  262 (339)
T ss_pred             -h----hhHHHHHHHHhc---CCEEEEECCCC
Confidence             1    236667778899   99999987763

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=94.54  E-value=0.056  Score=46.13  Aligned_cols=85  Identities=21%  Similarity=0.339  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCceEEeCCCCC-CC----------CC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---------TDNLKFIAGDMNQ-SI----------PS  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---------~~rv~~~~~d~~~-~~----------~~  252 (359)
                      ++...|+.+|||-=.....+....++++++-+|+|++++.-++         ..+.+++..|+.+ .+          ++
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~  156 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD  156 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence            3445999999999999999998878899999999998875443         2346789999996 21          11


Q ss_pred             -ccEEEecchhccCChhHHHHHHHHH
Q 043623          253 -ADAFLFKLIFHDYDDEVCLKLLKNC  277 (359)
Q Consensus       253 -~D~i~~~~vlh~~~d~~~~~iL~~~  277 (359)
                       .-++++-.++.+++.+++..+|+.+
T Consensus       157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  157 RPTLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence             4578888999999999988888876

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=94.41  E-value=0.025  Score=39.95  Aligned_cols=44  Identities=20%  Similarity=0.408  Sum_probs=36.0

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |.+.|.+. +.+|..|||..+++   ++..++.+|+.|+..|.+.+..
T Consensus         5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~   48 (69)
T PF09012_consen    5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD   48 (69)
T ss_dssp             HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred             HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence            34556654 78999999999999   6899999999999999999885

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=94.37  E-value=0.2  Score=42.67  Aligned_cols=100  Identities=11%  Similarity=0.097  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCC-----CCC-CccEEEec
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQ-----SIP-SADAFLFK  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~-----~~~-~~D~i~~~  259 (359)
                      .+.++||+=+|+|.++.+-+.+... +++.+|. ..+...++       ...+++++..|...     ... .||+|++-
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            4689999999999999999888654 7888887 44443333       25788888888874     111 39999987


Q ss_pred             chhcc-CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          260 LIFHD-YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       260 ~vlh~-~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      =-++. .-+.+..-++-.-...|+|    +.++++|....
T Consensus       122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~  157 (187)
T COG0742         122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD  157 (187)
T ss_pred             CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence            66651 1121222222224567998    45666666544

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=94.34  E-value=0.055  Score=44.15  Aligned_cols=51  Identities=16%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +++.++.+||+.+++   ++..+.+.++.|...|+|.+..        ...|++|+.|..+.
T Consensus        20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~a   70 (142)
T PRK03902         20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKIG   70 (142)
T ss_pred             CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHHH
Confidence            378999999999999   6799999999999999999764        46799999887554

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=94.33  E-value=0.093  Score=34.85  Aligned_cols=42  Identities=33%  Similarity=0.442  Sum_probs=33.9

Q ss_pred             HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHH
Q 043623           29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLL   77 (359)
Q Consensus        29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L   77 (359)
                      -.+|.+|+++|-||. +   ...|.++||+.+|+   ++..+...||..
T Consensus         6 ~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra   47 (53)
T PF04967_consen    6 REILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA   47 (53)
T ss_pred             HHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence            468999999999997 3   57999999999999   456666666543

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=94.25  E-value=0.26  Score=40.23  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=48.6

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|... ++.|..+||+.+++   ++..+.++++.|...|+|.+....  .|.-.-.+.+|+.|+.+.
T Consensus        43 ~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~--~DrR~~~l~LT~~G~~~~  108 (144)
T PRK11512         43 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP--NDKRGVLVKLTTSGAAIC  108 (144)
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCc--ccCCeeEeEEChhHHHHH
Confidence            3446666543 68999999999999   689999999999999999988521  000112467788777554

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=94.14  E-value=0.073  Score=43.02  Aligned_cols=47  Identities=19%  Similarity=0.379  Sum_probs=39.2

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.|.++||+++++   ++..++++|+.|...|++....      |.+|.|+++..
T Consensus        24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~------G~~Ggy~l~~~   70 (135)
T TIGR02010        24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVR------GPGGGYQLGRP   70 (135)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEe------CCCCCEeccCC
Confidence            68999999999999   5799999999999999998753      11467888753

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=94.12  E-value=0.019  Score=41.93  Aligned_cols=66  Identities=21%  Similarity=0.372  Sum_probs=47.6

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      ++++|...|... +..+..+|.+.+|+   +...+.+.|+.|...|+++....... ..-.-.|++|+.|+
T Consensus         1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~-~~p~t~~~lT~~Gr   66 (80)
T PF13601_consen    1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEG-RRPRTWYSLTDKGR   66 (80)
T ss_dssp             HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SS-S--EEEEEE-HHHH
T ss_pred             CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccC-CCCeEEEEECHHHH
Confidence            467777788663 68999999999999   57999999999999999998753110 00012588998876

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.10  E-value=0.045  Score=41.83  Aligned_cols=31  Identities=16%  Similarity=0.330  Sum_probs=25.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL  226 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~  226 (359)
                      +....+|||||+|.+.--|...  +.++.|+|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            4678999999999988887775  567888885

; GO: 0008168 methyltransferase activity

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=93.89  E-value=0.12  Score=47.30  Aligned_cols=98  Identities=15%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCC------CCCccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQS------IPSADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~------~~~~D~i~~  258 (359)
                      .+++|||+=|=||.++...+... -.+++.+|. ..+++.+++        .++++++..|+++.      ...||+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            46899999999999999877643 347999999 567766653        47899999999862      124999987


Q ss_pred             cch-h--ccCC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          259 KLI-F--HDYD-DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       259 ~~v-l--h~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -=- +  ..+. ..+-.++++.+.+.|+|   ||.|+.+..
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc  239 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC  239 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence            411 0  1111 12345789999999999   887765444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.88  E-value=0.17  Score=49.30  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hH----HHhcCCCCCCceEEeCCCCCC---CC-CccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PH----VIADLPETDNLKFIAGDMNQS---IP-SADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~i~~a~~~~rv~~~~~d~~~~---~~-~~D~i~~~~vlh  263 (359)
                      .....|+|...|.|.|+.+|.+. |   +.++.. |.    .+...-+ ....-+.+|-.++   +| .||++-..+++.
T Consensus       364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs  438 (506)
T PF03141_consen  364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLFS  438 (506)
T ss_pred             cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhhh
Confidence            45678999999999999999764 3   444444 22    1211111 1122244555554   44 399999999997


Q ss_pred             cCC-hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          264 DYD-DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       264 ~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                      .+. .-+...+|-++-|.|+|   +|.++|-|..-                             ...+++.++..-.++.
T Consensus       439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~  486 (506)
T PF03141_consen  439 LYKDRCEMEDILLEMDRILRP---GGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEV  486 (506)
T ss_pred             hhcccccHHHHHHHhHhhcCC---CceEEEeccHH-----------------------------HHHHHHHHHHhCcceE
Confidence            764 33456789999999999   89988865420                             2455667777777765


Q ss_pred             eeEEecCC---cceEEEEEC
Q 043623          343 YKITPLLG---LRSFIEVYL  359 (359)
Q Consensus       343 ~~~~~~~~---~~~~i~~~~  359 (359)
                      ..+..-.+   ...++.++|
T Consensus       487 ~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  487 RIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             EEEecCCCCCCCceEEEEEC
Confidence            43332232   356777665

; GO: 0008168 methyltransferase activity

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=93.75  E-value=0.072  Score=42.07  Aligned_cols=47  Identities=23%  Similarity=0.347  Sum_probs=38.5

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV   88 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~   88 (359)
                      .++-+|-+.++|.|+++||+.++.   +...+.+-|+-|...|++.+...
T Consensus        31 ~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~   77 (126)
T COG3355          31 EVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV   77 (126)
T ss_pred             HHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence            344444312389999999999999   67899999999999999999963

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=93.71  E-value=0.079  Score=35.82  Aligned_cols=44  Identities=20%  Similarity=0.422  Sum_probs=38.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |++.|... +..|+++||+.+++   ++.-++|=|..|...|++.+..
T Consensus         5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~   48 (57)
T PF08220_consen    5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH   48 (57)
T ss_pred             HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence            45666654 79999999999999   6799999999999999999986

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>KOG2730 consensus Methylase [General function prediction only]

Probab=93.70  E-value=0.035  Score=48.01  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ  248 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~  248 (359)
                      ....|+|.-||-|+.++.++.++|  .++.+|+ |.-+..|+.       .+||+|++||+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            457899999999999999999987  5888888 666666653       6799999999987

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=93.68  E-value=0.19  Score=39.42  Aligned_cols=70  Identities=17%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ..++.++..|... ++.|..+||+.+++   +...+.+.++-|...|+|.+....  .|.-.-.+.+|+.|+.+..
T Consensus        28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~--~D~R~~~v~LT~~G~~~~~   97 (118)
T TIGR02337        28 EQQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKAS--NDQRRVYISLTPKGQALYA   97 (118)
T ss_pred             HHHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCC--CCCCeeEEEECHhHHHHHH
Confidence            3345567777654 78999999999999   578999999999999999987421  0111136899998885554

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.66  E-value=0.77  Score=43.91  Aligned_cols=111  Identities=16%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHH----HHHHC---CCCeEEEeechH-----HHhcCCC-------CCCc--e
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARI----ISEAF---PSIKCSVLELPH-----VIADLPE-------TDNL--K  240 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~----l~~~~---p~~~~~~~D~~~-----~i~~a~~-------~~rv--~  240 (359)
                      ..|++++.  -.+..+|+|+|.|.|.-=..    |+.+.   |.+++|+++.|.     .++.+.+       .-+|  +
T Consensus       100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe  177 (374)
T PF03514_consen  100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE  177 (374)
T ss_pred             HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence            67788876  55678999999999954444    44432   788999999832     2222211       2233  3


Q ss_pred             EEeC--CCCCCC--------C-CccEEEecchhccCChh------HHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          241 FIAG--DMNQSI--------P-SADAFLFKLIFHDYDDE------VCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       241 ~~~~--d~~~~~--------~-~~D~i~~~~vlh~~~d~------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      |...  +-.+..        + ++=+|-+...||++.++      ....+|+.++ .|+|    -.++++|...+.
T Consensus       178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~  248 (374)
T PF03514_consen  178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADH  248 (374)
T ss_pred             EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCC
Confidence            3331  211111        1 23344455667887632      2345777665 6899    466777776554

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK11050 manganese transport regulator MntR; Provisional

Probab=93.64  E-value=0.37  Score=39.75  Aligned_cols=58  Identities=16%  Similarity=0.259  Sum_probs=46.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      |...+.. +++.+..+||+.+++   ++..+.++++.|...|++....        ...+++|+.|..+.
T Consensus        42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l~   99 (152)
T PRK11050         42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKLA   99 (152)
T ss_pred             HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHHH
Confidence            4445544 368999999999999   6899999999999999998865        35688898876544

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=93.57  E-value=0.1  Score=43.01  Aligned_cols=47  Identities=19%  Similarity=0.384  Sum_probs=40.5

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.|+++||+..++   ++..+++++..|...|+|+....      -+|.|+|..-
T Consensus        24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG------~~GGy~Lar~   70 (150)
T COG1959          24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRG------KGGGYRLARP   70 (150)
T ss_pred             CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecC------CCCCccCCCC
Confidence            48999999999999   57999999999999999998862      2578988754

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.55  E-value=0.29  Score=47.46  Aligned_cols=97  Identities=20%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc-----CCCCCCceEEeCCCCC-CCC--CccEEEecchhccC-
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD-----LPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDY-  265 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~-----a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~-  265 (359)
                      -+++-+|||.-.+...+-+..-. .++-+|. +.+++.     ++..+...+...|+.. .++  +||+++....+++. 
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~-dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFE-DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCC-CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            39999999999988888775322 5677777 333332     3346778899999988 665  59999999999875 


Q ss_pred             ChhH-------HHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          266 DDEV-------CLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       266 ~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      .|+.       +...+..++++++|   ||+.+.+-..
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~  163 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV  163 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence            3332       23468899999999   8998877663

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=0.18  Score=40.86  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~vlh  263 (359)
                      .+..+.+|+|.|.|......++.. -...+++++ |..+...+.       +.++.|..-|.++ +..+|.-++.+.+-.
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes  149 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES  149 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence            455799999999999988877764 346888998 666654432       7888999999998 777665555544433


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      .++|-     -.+++.-|+.   +.+++-.-+-+|.
T Consensus       150 ~m~dL-----e~KL~~E~p~---nt~vvacRFPLP~  177 (199)
T KOG4058|consen  150 VMPDL-----EDKLRTELPA---NTRVVACRFPLPT  177 (199)
T ss_pred             HHhhh-----HHHHHhhCcC---CCeEEEEecCCCc
Confidence            33332     3445555666   7788777665554

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=93.40  E-value=0.19  Score=40.92  Aligned_cols=61  Identities=18%  Similarity=0.333  Sum_probs=46.4

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .++++.+.++.+.   . |.+.+.++||+.+|+   ++..+++.|+.|...|++.....      -+|.|.+..
T Consensus         9 YAl~~~i~la~~~---~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G------~~GG~~l~~   69 (141)
T PRK11014          9 YGLRALIYMASLP---E-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRG------KNGGIRLGK   69 (141)
T ss_pred             HHHHHHHHHhcCC---C-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecC------CCCCeeecC
Confidence            4566666655432   2 357899999999999   58999999999999999998852      135687764

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=93.32  E-value=0.53  Score=42.01  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCceEEe---CCCCC---CCCC-cc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE------------TDNLKFIA---GDMNQ---SIPS-AD  254 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~------------~~rv~~~~---~d~~~---~~~~-~D  254 (359)
                      ...+||++|+|+|..++..+. .....++.-|.+..++..+.            +..|....   ++...   -.+. +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            457899999999966665555 35668888888766554331            22343322   22222   1234 89


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +|+.+.++++-..  ...+++-++..|..   ++.+++.-..
T Consensus       165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~l  201 (248)
T KOG2793|consen  165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYPL  201 (248)
T ss_pred             EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEec
Confidence            9999999866432  23445556666776   6755444443

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=93.28  E-value=0.12  Score=41.51  Aligned_cols=47  Identities=23%  Similarity=0.473  Sum_probs=38.9

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.|.++||+.+++   ++..++++|+.|...|++.....      .++.|.++..
T Consensus        24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g------~~ggy~l~~~   70 (132)
T TIGR00738        24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRG------PGGGYRLARP   70 (132)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccC------CCCCccCCCC
Confidence            59999999999999   57999999999999999987531      1356887654

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=93.21  E-value=0.12  Score=42.84  Aligned_cols=53  Identities=11%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcC
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKD  111 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~  111 (359)
                      +++++..+||+.+++   ++..+..+++-|...|+++...        .+.+++|+.|+.++..
T Consensus        22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~a~~   74 (154)
T COG1321          22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREKAKE   74 (154)
T ss_pred             cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHHHHH
Confidence            389999999999999   6789999999999999999987        5889999988766543

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=93.14  E-value=0.12  Score=50.30  Aligned_cols=55  Identities=22%  Similarity=0.421  Sum_probs=45.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ  248 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~  248 (359)
                      ++.++.++|+-||||.++..+++..  .+++|+++ |+.++.|+.      -.+.+|++|-.++
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            6677999999999999999999864  47999998 888877764      5678999995555

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=93.10  E-value=0.1  Score=39.21  Aligned_cols=67  Identities=16%  Similarity=0.330  Sum_probs=48.0

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++-|...|+|......  .+.-...|.+|+.+..+.
T Consensus        12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~--~~~r~~~~~lT~~g~~~~   78 (101)
T smart00347       12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSP--EDRRSVLVSLTEEGRELI   78 (101)
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCC--CCCCeEEEEECHhHHHHH
Confidence            34455666543 57999999999999   578999999999999999977420  000013577887776444

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=93.01  E-value=0.1  Score=46.65  Aligned_cols=65  Identities=15%  Similarity=0.331  Sum_probs=55.8

Q ss_pred             HHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +.-.-|.+|+-.|.+  ||.|.+||-..+++   ++..+..=++-|...|++.+++         +.|++|+.|+.++.
T Consensus        10 f~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~~---------~~Y~LS~~G~iiv~   74 (260)
T COG4742          10 FLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQEG---------DRYSLSSLGKIIVE   74 (260)
T ss_pred             HccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEecC---------CEEEecchHHHHHH
Confidence            344556778888886  89999999999999   5688888999999999999995         89999999987774

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=92.99  E-value=0.34  Score=33.16  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           51 VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        51 ~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|..+||+.+++   +...+++.|..|...|+++...
T Consensus        26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~   59 (66)
T cd07377          26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP   59 (66)
T ss_pred             CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence            459999999999   6799999999999999998775

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=92.90  E-value=0.15  Score=42.11  Aligned_cols=47  Identities=21%  Similarity=0.320  Sum_probs=40.3

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.|.++||++.++   ++..++++|..|...|||....      |-+|.|+++..
T Consensus        23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r------G~~GGy~La~~   69 (153)
T PRK11920         23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR------GRNGGVRLGRP   69 (153)
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec------CCCCCeeecCC
Confidence            57899999999999   5799999999999999999885      22577888753

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=92.88  E-value=0.24  Score=45.18  Aligned_cols=65  Identities=17%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCceEEeCCCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ  248 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~  248 (359)
                      .+.+..+.  ..+....+|.--|.|+++..+++++|... .+++|. |.+++.+++     .+|++++..+|..
T Consensus        13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            56666666  56779999999999999999999998765 999999 888888775     6799999988765

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=92.84  E-value=0.058  Score=36.87  Aligned_cols=47  Identities=17%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             cCcccccccCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           38 LGIPDIIHKRGRP-VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        38 lglf~~L~~~~~~-~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +.++-.|...+++ .|..+||+.+++   ++..+.+.++.|...|+|.+..
T Consensus         8 ~~vL~~l~~~~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~   55 (62)
T PF12802_consen    8 FRVLMALARHPGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER   55 (62)
T ss_dssp             HHHHHHHHHSTTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence            3344555553222 899999999999   6899999999999999999885

...

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=92.70  E-value=0.18  Score=42.83  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=40.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|+++|..+ +++|.++||+.+|+   ....+|+.|..|...|++....
T Consensus        25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r   70 (178)
T PRK06266         25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR   70 (178)
T ss_pred             hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence            3477888765 79999999999999   6899999999999999999653

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=92.69  E-value=0.093  Score=36.55  Aligned_cols=39  Identities=23%  Similarity=0.510  Sum_probs=32.6

Q ss_pred             CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           47 RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        47 ~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +|-|-|+.|||+.+|+.  ++..+.+.|++|...|++.+..
T Consensus        22 ~G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~   60 (65)
T PF01726_consen   22 NGYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP   60 (65)
T ss_dssp             HSS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred             cCCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence            35678999999999996  5899999999999999999985

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=92.63  E-value=0.13  Score=44.73  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=48.1

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCccchhhhc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSASKLLLK  110 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~~~~l~~  110 (359)
                      .|+..|... ++.|..+||+.+++   ++..+++.|+.|...|++.+..... ..+ -.-.|++|+.+..+..
T Consensus         5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~-~~gRp~~~y~LT~~G~~~~~   72 (203)
T TIGR02702         5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQ-GMGRPQYHYQLSRQGREQFP   72 (203)
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeeccc-CCCCCceEEEECcchhhhcc
Confidence            455666543 68999999999999   6899999999999999998763100 011 1124788888775443

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=92.54  E-value=0.05  Score=36.85  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=36.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++..|..+ ++.|..+||+.+++   ++..+.++++.|...|++.+..
T Consensus         8 iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~   51 (59)
T PF01047_consen    8 ILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER   51 (59)
T ss_dssp             HHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence            34444444 67999999999999   6899999999999999999885

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=92.53  E-value=0.26  Score=33.01  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..+ |..+||+.+++   +...+++.|+.|...|++....
T Consensus        18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~   54 (60)
T smart00345       18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP   54 (60)
T ss_pred             CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            455 89999999999   6899999999999999998775

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=92.51  E-value=0.66  Score=45.39  Aligned_cols=120  Identities=17%  Similarity=0.308  Sum_probs=77.9

Q ss_pred             hHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc-cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHH
Q 043623          157 WGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI-FDGLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVI  230 (359)
Q Consensus       157 ~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i  230 (359)
                      |+.+++|+-.-..|+++..      ..+....+++ .+....|+-+|+|.|-+..+..++    .-.++.++++- |.++
T Consensus       335 YetFEkD~VKY~~Yq~Ai~------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAi  408 (649)
T KOG0822|consen  335 YETFEKDPVKYDQYQQAIL------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAI  408 (649)
T ss_pred             hhhhhccchHHHHHHHHHH------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchh
Confidence            5666677666566665542      3444444422 223567889999999988877664    23456677776 6665


Q ss_pred             hcCCC------CCCceEEeCCCCC-CCC--CccEEEecchhccCChhH-HHHHHHHHHHhcCC
Q 043623          231 ADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEV-CLKLLKNCREAVAS  283 (359)
Q Consensus       231 ~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~-~~~iL~~~~~~L~p  283 (359)
                      ...+.      .++|+++..||.+ .-|  .+|++++- .|--+.|.+ ..+-|..+-+.|||
T Consensus       409 vtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkp  470 (649)
T KOG0822|consen  409 VTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKP  470 (649)
T ss_pred             hhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCC
Confidence            54432      7899999999998 544  48887654 344444333 34568888889999

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=92.43  E-value=0.12  Score=45.13  Aligned_cols=67  Identities=21%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCccchhhhcC
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSASKLLLKD  111 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~~~~l~~~  111 (359)
                      |...|.++ +|+|+.|||+++|+   ++..+++-|+.|++.|+++.... ..-.| -.-.|++|..+.....+
T Consensus        16 il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~-~~g~GRP~~~y~Lt~~g~~~f~~   83 (218)
T COG2345          16 ILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQ-QGGRGRPAKLYRLTEKGREQFPK   83 (218)
T ss_pred             HHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeec-cCCCCCCceeeeecccchhhcch
Confidence            34455554 89999999999999   57999999999999999987631 00001 01258888877654433

>PRK10742 putative methyltransferase; Provisional

Probab=92.41  E-value=0.23  Score=44.22  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             HHHHHhcccccCCCC--eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-------cCC------C--CCCceEEe
Q 043623          182 KLIIKDCKHIFDGLS--SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-------DLP------E--TDNLKFIA  243 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-------~a~------~--~~rv~~~~  243 (359)
                      ..+++++.  ++++.  +|||.=+|+|..+..++.+  +++++.+|. |.+..       .+.      .  ..|++++.
T Consensus        76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            45666665  56655  9999999999999999988  667999998 43322       221      0  14677777


Q ss_pred             CCCCC---CCC-CccEEEec
Q 043623          244 GDMNQ---SIP-SADAFLFK  259 (359)
Q Consensus       244 ~d~~~---~~~-~~D~i~~~  259 (359)
                      +|..+   ..+ .||+|++-
T Consensus       152 ~da~~~L~~~~~~fDVVYlD  171 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYLD  171 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEEC
Confidence            77665   122 37777653

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=92.33  E-value=0.16  Score=35.65  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=42.4

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.++..|.+  ++.+..+||+++|+   +...+++-++.|.+.|+.....        +..|++.+.
T Consensus         3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~--------~~g~~l~~~   56 (69)
T TIGR00122         3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV--------GKGYRLPPP   56 (69)
T ss_pred             HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec--------CCceEecCc
Confidence            446667775  68999999999999   6899999999999999965543        255776543

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=92.32  E-value=0.17  Score=40.52  Aligned_cols=46  Identities=15%  Similarity=0.374  Sum_probs=37.8

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      ++.|..+||+++++   ++..+.++|+.|...|++.....      .++.|.+..
T Consensus        24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g------~~ggy~l~~   69 (130)
T TIGR02944        24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG------VEGGYTLAR   69 (130)
T ss_pred             CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC------CCCChhhcC
Confidence            68999999999999   57999999999999999986531      135576644

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.31  E-value=0.95  Score=42.89  Aligned_cols=70  Identities=13%  Similarity=0.100  Sum_probs=54.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSI---------------------------------------KCSVLEL-PHVIA  231 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~i~  231 (359)
                      +.++..++|==||+|.++++.+...+++                                       .++++|+ +.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            5566899999999999999988776531                                       2679999 77877


Q ss_pred             cCCC-------CCCceEEeCCCCC-CC--CCccEEEecch
Q 043623          232 DLPE-------TDNLKFIAGDMNQ-SI--PSADAFLFKLI  261 (359)
Q Consensus       232 ~a~~-------~~rv~~~~~d~~~-~~--~~~D~i~~~~v  261 (359)
                      .|+.       .+.|+|..+|+.. .-  ..+|+|+++--
T Consensus       269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP  308 (381)
T COG0116         269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP  308 (381)
T ss_pred             HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence            6653       7889999999987 33  36899998743

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=92.24  E-value=0.16  Score=44.16  Aligned_cols=58  Identities=16%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      +.++..|..+ ++.+..+||+.+++   ++..+.+.|..|...|++.+...      -...|.+|+.|
T Consensus       146 ~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~------r~~~~~lT~~G  203 (203)
T TIGR01884       146 LKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR------KGKRYSLTKLG  203 (203)
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC------CccEEEeCCCC
Confidence            4455666553 57899999999999   57899999999999999998851      03578888754

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=92.20  E-value=0.16  Score=33.82  Aligned_cols=39  Identities=28%  Similarity=0.442  Sum_probs=32.2

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccC
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSG   81 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g   81 (359)
                      |+..|..+++++|.++||+.+++   +.+-+++-+..|...|
T Consensus         5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~   43 (55)
T PF08279_consen    5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence            45556333477999999999999   6899999999999999

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=92.09  E-value=0.1  Score=38.94  Aligned_cols=62  Identities=21%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             ccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           41 PDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        41 f~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +..|..  ++....||.+.+ ++   ++..|.+=|+.|.+.|++++......+  ..-.|++|+.|..|.
T Consensus        11 L~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p--~~v~Y~LT~~G~~l~   73 (90)
T PF01638_consen   11 LRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVP--PRVEYSLTEKGKELL   73 (90)
T ss_dssp             HHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSS--SEEEEEE-HHHHHHH
T ss_pred             HHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCC--CCCccCCCcCHHHHH
Confidence            344554  799999999999 88   679999999999999999987421000  013699999988666

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.82  E-value=0.16  Score=49.27  Aligned_cols=66  Identities=24%  Similarity=0.428  Sum_probs=52.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-CC---CccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-IP---SADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~~---~~D~i~~  258 (359)
                      ..+..+|+|+=||.|.++..++++  -.+++++++ +++++.|++      .++++|+.++.++  + +.   .+|.|+.
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            446689999999999999999965  458999998 788877664      5669999999887  2 21   3788877


Q ss_pred             c
Q 043623          259 K  259 (359)
Q Consensus       259 ~  259 (359)
                      -
T Consensus       369 D  369 (432)
T COG2265         369 D  369 (432)
T ss_pred             C
Confidence            5

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=91.68  E-value=0.21  Score=32.49  Aligned_cols=43  Identities=19%  Similarity=0.387  Sum_probs=36.2

Q ss_pred             ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|.++ ++.|..+|++.+++   ++..+.+.|..|...|++....
T Consensus         6 l~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~   48 (53)
T smart00420        6 LELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH   48 (53)
T ss_pred             HHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence            3444443 67999999999999   6799999999999999999875

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=91.59  E-value=0.19  Score=39.59  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           25 SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        25 ~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +|-..+.+-.=-.+.|+..|+++ +|.|+.|+|+..|-   +...+.|-|+.|+..|++..+.
T Consensus        54 Sye~la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~  112 (144)
T COG4190          54 SYEDLARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE  112 (144)
T ss_pred             cHHHHHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence            34455555556678888999875 89999999999999   7899999999999999999886

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=91.55  E-value=2.7  Score=35.23  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=74.1

Q ss_pred             EEcCCchHHHHHHHHHCC---CCeEEEeechH-HHhcCC---------CCCCceE-EeCCCCC--C-C--C--CccEEEe
Q 043623          200 EVGGGTGSFARIISEAFP---SIKCSVLELPH-VIADLP---------ETDNLKF-IAGDMNQ--S-I--P--SADAFLF  258 (359)
Q Consensus       200 DvG~G~G~~~~~l~~~~p---~~~~~~~D~~~-~i~~a~---------~~~rv~~-~~~d~~~--~-~--~--~~D~i~~  258 (359)
                      =||=|.=.++..|++.+.   ++-++.+|..+ ..+.-.         +...+.+ ...|..+  . .  .  .||.|++
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            367888888899999877   44567777633 322221         1333443 3446555  1 2  1  3999999


Q ss_pred             cchhccC-----------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccC
Q 043623          259 KLIFHDY-----------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERS  327 (359)
Q Consensus       259 ~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t  327 (359)
                      ++--.-.           ..+-...+|+.+.+.|++   +|.|.|.=.....                          ++
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~  132 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD  132 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence            8753220           112345788999999999   8998885432111                          11


Q ss_pred             HHHHHHHHHhcCCceeeEEecC
Q 043623          328 EKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      .=+++++.+++||...+..+..
T Consensus       133 ~W~i~~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  133 SWNIEELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             cccHHHHHHhcCCEEEEEecCC
Confidence            2223577788999998888763

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=91.51  E-value=0.11  Score=49.24  Aligned_cols=49  Identities=27%  Similarity=0.479  Sum_probs=37.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCC
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDM  246 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~  246 (359)
                      .+|||+=||.|.++..+++...  +++++|. +++++.|+.      -++++|+.++.
T Consensus       198 ~~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             CcEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            3899999999999999998754  7999998 788877764      57889987654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.43  E-value=0.16  Score=39.06  Aligned_cols=83  Identities=17%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             ccEEEecchh---c-cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC----CCCCchHHHHHHHhhhhhhhhcCCc
Q 043623          253 ADAFLFKLIF---H-DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE----KKDKPEITEAKLLYDALMMTCVPGI  324 (359)
Q Consensus       253 ~D~i~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~  324 (359)
                      ||+|++..|.   | ++.|+....+++++++.|+|   || ++|+|+-.=.    .....  ......+.        .-
T Consensus         2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG-~lilEpQ~w~sY~~~~~~~--~~~~~n~~--------~i   67 (110)
T PF06859_consen    2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GG-ILILEPQPWKSYKKAKRLS--EEIRENYK--------SI   67 (110)
T ss_dssp             EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EE-EEEEE---HHHHHTTTTS---HHHHHHHH--------H-
T ss_pred             ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CC-EEEEeCCCcHHHHHHhhhh--HHHHhHHh--------ce
Confidence            8999888764   3 36799999999999999999   55 5555542100    00000  00001111        11


Q ss_pred             ccCHHHHHHHHHh--cCCceeeEEecC
Q 043623          325 ERSEKEWERLFFD--AGFTSYKITPLL  349 (359)
Q Consensus       325 ~~t~~e~~~ll~~--aGf~~~~~~~~~  349 (359)
                      ...++++.++|.+  .||...+....+
T Consensus        68 ~lrP~~F~~~L~~~evGF~~~e~~~~~   94 (110)
T PF06859_consen   68 KLRPDQFEDYLLEPEVGFSSVEELGVP   94 (110)
T ss_dssp             ---GGGHHHHHTSTTT---EEEEE---
T ss_pred             EEChHHHHHHHHhcccceEEEEEcccC
Confidence            2356678888887  699988866553

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.42  E-value=0.47  Score=44.77  Aligned_cols=102  Identities=17%  Similarity=0.298  Sum_probs=71.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec---hHHHhcCC-------------CCCCceEEeCCCCCC------
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL---PHVIADLP-------------ETDNLKFIAGDMNQS------  249 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~i~~a~-------------~~~rv~~~~~d~~~~------  249 (359)
                      ..+.....|+|+|.|.+...++.....-+-+|+++   |.-.+...             ....+..+.+++..+      
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence            56778999999999999998877554444566665   33222211             145577889999873      


Q ss_pred             CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       250 ~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      .+.+++|+++++.  ++++...+ +.++...+++   |.+++-.++..+.
T Consensus       270 ~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r  313 (419)
T KOG3924|consen  270 QTEATVIFVNNVA--FDPELKLR-SKEILQKCKD---GTRIISSKPLVPR  313 (419)
T ss_pred             hhcceEEEEeccc--CCHHHHHh-hHHHHhhCCC---cceEecccccccc
Confidence            2359999999987  44443333 4478888888   8999988888774

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=91.36  E-value=1.1  Score=36.47  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ++..|...+++.|..+||+.+++   ++..+.+.++.|...|+|.+....+  |.=.-.+.+|+.|+.+..
T Consensus        36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~~  101 (144)
T PRK03573         36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCAS--DRRAKRIKLTEKAEPLIS  101 (144)
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCC--CcCeeeeEEChHHHHHHH
Confidence            44555433346899999999999   6789999999999999999885210  000125778888875553

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.34  E-value=0.18  Score=41.95  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=39.4

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|+++|..+ +.+|-++||+.+|+   +...+|++|..|...|++....
T Consensus        17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r   62 (158)
T TIGR00373        17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR   62 (158)
T ss_pred             HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence            4467777654 78999999999999   6899999999999999997554

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.25  E-value=0.18  Score=47.97  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CCC--ccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IPS--ADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~~--~D~i~~~~v  261 (359)
                      +...|||||.|||.++...+++..+ ++++++. -+|.+.|++       +++|+++.---.+ . .|.  +|+++...+
T Consensus        66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f  144 (636)
T KOG1501|consen   66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF  144 (636)
T ss_pred             ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence            3457999999999999998888755 6898887 666666553       7788877654333 2 222  777766655


Q ss_pred             hccCChhHHHHHHHHHHHhcC
Q 043623          262 FHDYDDEVCLKLLKNCREAVA  282 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~  282 (359)
                      .--+--+.+..-++.+++.|-
T Consensus       145 dtEligeGalps~qhAh~~L~  165 (636)
T KOG1501|consen  145 DTELIGEGALPSLQHAHDMLL  165 (636)
T ss_pred             hhhhhccccchhHHHHHHHhc
Confidence            544444445556777777663

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=91.21  E-value=0.47  Score=43.05  Aligned_cols=98  Identities=17%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEeechH-HHhcCC----------CCCCceEEeCCCCC---C--CCCcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSI-KCSVLELPH-VIADLP----------ETDNLKFIAGDMNQ---S--IPSAD  254 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~i~~a~----------~~~rv~~~~~d~~~---~--~~~~D  254 (359)
                      .+.+++|+-||+|-|.+.+...++ +.+ .+..+|+.+ +++..+          ..++|..+.||-+.   .  ...||
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            457899999999999999999987 544 467777744 444332          27899999998665   2  33599


Q ss_pred             EEEecchhccCChhH---HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          255 AFLFKLIFHDYDDEV---CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~---~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +|+.-..= ...+..   -..++.-+.++||+   +|.+++..
T Consensus       198 Vii~dssd-pvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~  236 (337)
T KOG1562|consen  198 VIITDSSD-PVGPACALFQKPYFGLVLDALKG---DGVVCTQG  236 (337)
T ss_pred             EEEEecCC-ccchHHHHHHHHHHHHHHHhhCC---CcEEEEec
Confidence            99876421 011111   12467778899999   88887764

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=91.20  E-value=1.9  Score=40.86  Aligned_cols=106  Identities=10%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHh----cCCC--CCCceEEeCCCCC---CCC--C-ccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIA----DLPE--TDNLKFIAGDMNQ---SIP--S-ADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~----~a~~--~~rv~~~~~d~~~---~~~--~-~D~i  256 (359)
                      -.++.+|||...+.|.=+.++++..++  ..++.+|. +.-+.    +++.  ..++..+..|...   ..+  . ||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            456799999999999999999998876  55689998 33333    2322  4557777777654   122  2 8888


Q ss_pred             Eec------chh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          257 LFK------LIF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       257 ~~~------~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      ++-      .++       ..++..+.       .++|..+.+.|||   ||.|+-....+...
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~e  294 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTPE  294 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCchh
Confidence            652      233       33333321       3689999999999   88777665554433

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.95  E-value=2.6  Score=39.65  Aligned_cols=149  Identities=16%  Similarity=0.121  Sum_probs=76.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH--------C--------CCCeEEEeechH--HHhcCCC----------CCCc--eE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA--------F--------PSIKCSVLELPH--VIADLPE----------TDNL--KF  241 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~--~i~~a~~----------~~rv--~~  241 (359)
                      .++.-+|+|+||.+|..+..+...        +        |.+.++.-|+|.  .-...+.          ..++  .-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            455679999999999998876442        1        345778888752  2111111          1232  33


Q ss_pred             EeCCCCC-CCC--CccEEEecchhccCC-------h------------------hH------------HHHHHHHHHHhc
Q 043623          242 IAGDMNQ-SIP--SADAFLFKLIFHDYD-------D------------------EV------------CLKLLKNCREAV  281 (359)
Q Consensus       242 ~~~d~~~-~~~--~~D~i~~~~vlh~~~-------d------------------~~------------~~~iL~~~~~~L  281 (359)
                      +.+.|.. -+|  +.|++++++.||-.+       +                  +.            ...+|+.=.+-|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            6688888 456  489999999998653       1                  11            122333333468


Q ss_pred             CCCCCCceEEEEeeecCCCCCCch--HHHHHHHhhh-hhhhhcC-------------CcccCHHHHHHHHHhcC-Ccee
Q 043623          282 ASSDGREKVIIVDIVVNEKKDKPE--ITEAKLLYDA-LMMTCVP-------------GIERSEKEWERLFFDAG-FTSY  343 (359)
Q Consensus       282 ~p~~~gG~lli~e~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~-------------g~~~t~~e~~~ll~~aG-f~~~  343 (359)
                      +|   ||++++.-...++......  ......+.+. .-|+.-|             --.++.+|+++.+++.| |++.
T Consensus       174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~  249 (334)
T PF03492_consen  174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE  249 (334)
T ss_dssp             EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred             cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence            88   9999988877776322110  0001111111 1111111             12368999999999887 4443

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=90.94  E-value=0.29  Score=34.27  Aligned_cols=55  Identities=22%  Similarity=0.430  Sum_probs=41.7

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .|+..+..  ++.+..+|++.+++   +...+.+.|+.|...|++......     ....|++++
T Consensus        11 ~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~-----~~~~~~~~~   65 (78)
T cd00090          11 RILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG-----RRVYYSLTD   65 (78)
T ss_pred             HHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec-----cEEEEEeCC
Confidence            34555554  34999999999999   578999999999999999977420     125677775

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.91  E-value=0.43  Score=49.30  Aligned_cols=96  Identities=20%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC---------------------C-
Q 043623          194 GLSSLVEVGGGTGSFARIISEAF-------P-----SIKCSVLEL-P---HVIADLP---------------------E-  235 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~i~~a~---------------------~-  235 (359)
                      ..-+|+|+|=|+|.......+.+       |     .++++.++. |   +.+..+.                     . 
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34799999999998777766543       4     467888885 2   1111110                     0 


Q ss_pred             -------CCCc--eEEeCCCCCC---CC-CccEEEecc-hhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          236 -------TDNL--KFIAGDMNQS---IP-SADAFLFKL-IFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       236 -------~~rv--~~~~~d~~~~---~~-~~D~i~~~~-vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                             ..+|  ++..+|+.+-   +. .+|++++-. .-..-++-....+|+.+.+.++|   ||++.-
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t  204 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLAT  204 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEE
Confidence                   2233  3566787652   22 389888763 22222333345789999999999   777763

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=90.81  E-value=0.38  Score=36.02  Aligned_cols=46  Identities=15%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             HHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           53 LPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        53 ~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ..+||+.+++   ++..+.+.++.|...|++.+..        +..|.+|+.+..+.
T Consensus         2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHHH
Confidence            4689999999   6799999999999999999986        45799999877554

iron dependent repressor

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=90.40  E-value=0.37  Score=32.95  Aligned_cols=37  Identities=16%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +++++..+||+.+++   ++..+...++-|...|+++...
T Consensus        20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~   56 (60)
T PF01325_consen   20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP   56 (60)
T ss_dssp             TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred             CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence            489999999999999   6899999999999999999885

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=90.18  E-value=0.35  Score=35.91  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             HHHcCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHH----------HHHhccCce-eeccccCCCCCCCceEecC
Q 043623           35 AVELGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIM----------RLLDHSGFF-STTKVHNSREEENEAYALT  102 (359)
Q Consensus        35 a~~lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L----------~~L~~~g~l-~~~~~~~~~~~~~~~~~~t  102 (359)
                      =++..|+..|... +.+.++.|||+.+++   ++..+..-|          ..|+.+|+| .+...     ++...|++|
T Consensus         9 ~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-----~g~k~Y~lT   80 (90)
T PF07381_consen    9 KVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-----GGFKYYRLT   80 (90)
T ss_pred             HHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-----CCeeEEEeC
Confidence            3455666666554 578999999999999   677777777          459999999 33321     124589999


Q ss_pred             ccchhhh
Q 043623          103 SASKLLL  109 (359)
Q Consensus       103 ~~~~~l~  109 (359)
                      +.+..++
T Consensus        81 ~~G~~~~   87 (90)
T PF07381_consen   81 EKGKRIA   87 (90)
T ss_pred             hhhhhHH
Confidence            9877543

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>PRK06474 hypothetical protein; Provisional

Probab=89.30  E-value=0.49  Score=40.16  Aligned_cols=75  Identities=21%  Similarity=0.307  Sum_probs=52.3

Q ss_pred             HHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      ..+|.--.++.|++.|...+++.|+.+|++.+ ++   +..-+-|.|+.|...|+|.......++.+-...|++++.+.
T Consensus         5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~   80 (178)
T PRK06474          5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA   80 (178)
T ss_pred             HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence            34555667788888887643459999999999 56   46788999999999999998642111111123577777543

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=89.25  E-value=0.4  Score=28.18  Aligned_cols=31  Identities=26%  Similarity=0.585  Sum_probs=25.7

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCce
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFF   83 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l   83 (359)
                      |+|-+|||..+|+   .++-+.|.|..|...|++
T Consensus         2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence            5789999999999   689999999999998875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=89.22  E-value=0.44  Score=37.41  Aligned_cols=50  Identities=20%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..++..|.+.+.++ |.+|..+++..+|+   +...+++.++.|++-|-|...+
T Consensus        11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G   60 (127)
T PF06163_consen   11 EELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG   60 (127)
T ss_pred             HHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence            44556677777776 79999999999999   6899999999999999999885

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=89.20  E-value=0.96  Score=36.63  Aligned_cols=106  Identities=21%  Similarity=0.252  Sum_probs=63.8

Q ss_pred             eEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC--CccEEEecchhccC-------ChhHHHHHHHHHHH
Q 043623          220 KCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDY-------DDEVCLKLLKNCRE  279 (359)
Q Consensus       220 ~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~-------~d~~~~~iL~~~~~  279 (359)
                      ++.+||+ +++++..++       .+||+++..+=..   -.+  ..|+++++--.=.=       ..+...+.|+.+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            5889999 677776653       4689988765443   233  48999888532111       13446688999999


Q ss_pred             hcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          280 AVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       280 ~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      .|+|   ||.+.|+-..-.+....    +..                ...+|.+-|.+..|.+.+...+
T Consensus        81 lL~~---gG~i~iv~Y~GH~gG~e----E~~----------------av~~~~~~L~~~~~~V~~~~~~  126 (140)
T PF06962_consen   81 LLKP---GGIITIVVYPGHPGGKE----ESE----------------AVEEFLASLDQKEFNVLKYQFI  126 (140)
T ss_dssp             HEEE---EEEEEEEE--STCHHHH----HHH----------------HHHHHHHTS-TTTEEEEEEEES
T ss_pred             hhcc---CCEEEEEEeCCCCCCHH----HHH----------------HHHHHHHhCCcceEEEEEEEcc
Confidence            9999   88887766543332111    111                2455555556667888777766

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=89.01  E-value=0.21  Score=37.37  Aligned_cols=54  Identities=13%  Similarity=0.274  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +++....-|.-.+++   +-...+..++.|+..|++...+.     +....|.+|+.|.-+.
T Consensus        29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~-----~~~~~y~lT~KG~~fl   82 (95)
T COG3432          29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN-----GRRKVYELTEKGKRFL   82 (95)
T ss_pred             CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC-----CccceEEEChhHHHHH
Confidence            478999999999999   68999999999999997666651     0112799999998443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=88.89  E-value=3.4  Score=37.63  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-C----CCCccEEEecchhccCC----
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-S----IPSADAFLFKLIFHDYD----  266 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~----~~~~D~i~~~~vlh~~~----  266 (359)
                      +|+|+-||.|.+...+.+..-+ .+.++|. +.+++..+....-.++.+|+.+ .    .+.+|+++...-...++    
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~   80 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK   80 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence            6899999999999988876422 3577887 5555544431111255667766 1    34589998876554332    


Q ss_pred             -----hhHHHHHHHH---HHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          267 -----DEVCLKLLKN---CREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       267 -----d~~~~~iL~~---~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                           |+. -.++..   +.+.++|     +++++|.+..-....                    ......+|.+.|++.
T Consensus        81 ~~~~~d~r-~~L~~~~~~~i~~~~P-----~~~v~ENV~g~~~~~--------------------~~~~~~~i~~~l~~~  134 (275)
T cd00315          81 RKGFEDTR-GTLFFEIIRILKEKKP-----KYFLLENVKGLLTHD--------------------NGNTLKVILNTLEEL  134 (275)
T ss_pred             cCCCCCch-HHHHHHHHHHHHhcCC-----CEEEEEcCcchhccC--------------------chHHHHHHHHHHHhC
Confidence                 222 122322   3334466     688888764321100                    112467788889999


Q ss_pred             CCceeeE
Q 043623          339 GFTSYKI  345 (359)
Q Consensus       339 Gf~~~~~  345 (359)
                      ||.+...
T Consensus       135 GY~~~~~  141 (275)
T cd00315         135 GYNVYWK  141 (275)
T ss_pred             CcEEEEE
Confidence            9986443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=88.86  E-value=0.75  Score=34.65  Aligned_cols=44  Identities=9%  Similarity=0.090  Sum_probs=38.3

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      .+.|..|||+.+|+   ++..+.|.|..|...|++.....       .+.|..+
T Consensus        46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-------~~~~~~n   89 (95)
T TIGR01610        46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-------MGIVGVN   89 (95)
T ss_pred             CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-------CceeecC
Confidence            68999999999999   67899999999999999998752       4677765

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=88.67  E-value=0.53  Score=36.39  Aligned_cols=56  Identities=18%  Similarity=0.404  Sum_probs=42.3

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.=.-.+.+|+.|..+.
T Consensus        42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~--~D~R~~~i~lT~~G~~~~   97 (109)
T TIGR01889        42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSE--DDERKVIISINKEQRSKI   97 (109)
T ss_pred             CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCc--ccCCeEEEEECHHHHHHH
Confidence            68999999999999   689999999999999999987521  000012366777776444

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=88.46  E-value=0.57  Score=31.63  Aligned_cols=36  Identities=14%  Similarity=0.319  Sum_probs=33.0

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|..+|++.+++   +...+.+.|+.|...|++....
T Consensus         9 ~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~   44 (66)
T smart00418        9 GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR   44 (66)
T ss_pred             CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence            68999999999999   5789999999999999999764

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=88.33  E-value=0.57  Score=33.61  Aligned_cols=42  Identities=12%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             cccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           42 DIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        42 ~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |.|..+ +.+++.+||.+++.   ++..++-+|..|+++|-+.+..
T Consensus         9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~   50 (78)
T PRK15431          9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_pred             HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence            556665 78999999999999   5799999999999999999874

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=88.26  E-value=0.39  Score=36.89  Aligned_cols=47  Identities=15%  Similarity=0.306  Sum_probs=39.9

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      .+..|+..|... ++.|..+||+.+|+   ++..+++.++.|...|++...
T Consensus         4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~   50 (108)
T smart00344        4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY   50 (108)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence            345677777763 68999999999999   679999999999999999844

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=88.18  E-value=0.67  Score=33.28  Aligned_cols=49  Identities=18%  Similarity=0.219  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee-ccccCCCCCCCceEecCccch
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST-TKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~-~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      +.|+...+||+.+++   ++.-+|-.+..|.++|+|+. ...       .+.|..|..+-
T Consensus        21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-------s~GriPT~~aY   70 (78)
T PF03444_consen   21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-------SGGRIPTDKAY   70 (78)
T ss_pred             CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-------CCCCCcCHHHH
Confidence            589999999999999   67899999999999999985 432       36688876554

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.59  E-value=5.3  Score=38.20  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe---CC-CCC------CCCCccEEEec
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA---GD-MNQ------SIPSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~---~d-~~~------~~~~~D~i~~~  259 (359)
                      ..++.+||.+|||. |..+..+++...-.++++++. ++..+.+++...+.++.   .+ +.+      +-..+|+++-+
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            55678999999998 899999999876445888876 55655554321222222   11 111      11137877664


Q ss_pred             c---------------hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          260 L---------------IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       260 ~---------------vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -               +|+..++.  ...+..+.+.|++   +|+++++..
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~  307 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV  307 (386)
T ss_pred             CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence            2               12222333  3468888899999   899988854

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]

Probab=87.21  E-value=3  Score=34.18  Aligned_cols=86  Identities=20%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcCc-------ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623           13 FQAQAHLYKHVLSYMSSIFLKCAVELGI-------PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST   85 (359)
Q Consensus        13 ~~~~~~l~~~~~~~~~~~~l~~a~~lgl-------f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~   85 (359)
                      .=++.+.++ +++-|-..|+.++.+.++       +..+.-.+.|+++.+|+..++.+  |...+..-|+-|...|+++.
T Consensus        55 EyaL~~ay~-Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~  131 (199)
T COG5631          55 EYALMRAYE-AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITR  131 (199)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceec
Confidence            334444444 678888889988887664       22332235899999999999997  78899999999999999999


Q ss_pred             ccccCCCCCCCceEecCccch
Q 043623           86 TKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        86 ~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      .+.     +-+-.|..|+.|.
T Consensus       132 t~~-----gkevTy~vTa~G~  147 (199)
T COG5631         132 TGS-----GKEVTYEVTALGH  147 (199)
T ss_pred             CCC-----CceEEEEEecchH
Confidence            863     1123688888765

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=87.16  E-value=1.1  Score=39.32  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +|.....++   .+.+ ...+|..+||+.+++   ++..+.+.|+.|...|++++....     ....+++|+.|+.+.
T Consensus         6 ~Lk~iallg---~l~~-~~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~-----r~~~v~LTekG~~ll   72 (217)
T PRK14165          6 ALKKLALLG---AVNN-TVKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP-----RGQLITITEKGLDVL   72 (217)
T ss_pred             HHHHHHHHh---ccCC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC-----CceEEEECHHHHHHH
Confidence            344444444   4443 256999999999999   689999999999999999987420     135788898887544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=86.37  E-value=1.5  Score=40.18  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCC----C--CCCceEEeCCCCCC----CCC-ccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLP----E--TDNLKFIAGDMNQS----IPS-ADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~----~--~~rv~~~~~d~~~~----~~~-~D~i~~  258 (359)
                      -.++.+|||+.++.|.=+..++...+ ...+++.|. +.-+...+    .  ..++..+..|....    .+. ||.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            35678999999999999999999887 568999998 44333322    1  56677776776652    223 888876


Q ss_pred             c------chhccCCh-------hH-------HHHHHHHHHHhc----CCCCCCceEEEEeeec
Q 043623          259 K------LIFHDYDD-------EV-------CLKLLKNCREAV----ASSDGREKVIIVDIVV  297 (359)
Q Consensus       259 ~------~vlh~~~d-------~~-------~~~iL~~~~~~L----~p~~~gG~lli~e~~~  297 (359)
                      -      .++..-++       ++       =.++|+++.+.+    +|   ||+++-.-...
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~  222 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL  222 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence            2      22222211       11       136899999999    99   78776554433

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK10870 transcriptional repressor MprA; Provisional

Probab=86.25  E-value=1.2  Score=37.63  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +.++-.|... +++.|..+||+.+++   +...+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+..
T Consensus        58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~--DrR~~~v~LT~~G~~~~~  126 (176)
T PRK10870         58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDN--DRRCLHLQLTEKGHEFLR  126 (176)
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCC--CCCeeEEEECHHHHHHHH
Confidence            3445555432 367899999999999   6799999999999999999885211  001125778888875553

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=85.96  E-value=1.2  Score=31.61  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCcc-----cccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           30 IFLKCAVELGIP-----DIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        30 ~~l~~a~~lglf-----~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .++..+-+.|..     ..+.   -+.|-++||..+|+   +...+.+.|+.|...|++....         +.+....
T Consensus         6 ~Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~---------~~i~I~d   69 (76)
T PF13545_consen    6 FLLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR---------GKIIILD   69 (76)
T ss_dssp             HHHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET---------TEEEESS
T ss_pred             HHHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC---------CEEEECC
Confidence            345566666664     2333   57999999999999   6899999999999999999885         5666654

...

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=85.87  E-value=1.3  Score=35.76  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |++|.+|||-.+|+   ..+.+-.-|.++++-|-|.+..
T Consensus         5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~   40 (155)
T PF07789_consen    5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVN   40 (155)
T ss_pred             CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEec
Confidence            89999999999999   6799999999999999888774

The region in question is approximately 150 amino acid residues long.

>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities

Probab=85.76  E-value=1  Score=30.93  Aligned_cols=37  Identities=22%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           48 GRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        48 ~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |... |..+||+++++   +..-+++-|+.|.+.|++....
T Consensus        21 g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~   58 (64)
T PF00392_consen   21 GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP   58 (64)
T ss_dssp             TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred             CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence            3567 99999999999   6899999999999999999886

The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=85.40  E-value=0.4  Score=36.80  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=32.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |++.|..+ +.++-++||+.+++   ++..++++|..|...|++....
T Consensus        18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~   61 (105)
T PF02002_consen   18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR   61 (105)
T ss_dssp             HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred             HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence            46677654 68999999999999   6899999999999999997664

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=85.35  E-value=0.74  Score=45.10  Aligned_cols=69  Identities=12%  Similarity=0.228  Sum_probs=55.2

Q ss_pred             HHHcCcccccccCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCC
Q 043623           35 AVELGIPDIIHKRGRP-VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDK  112 (359)
Q Consensus        35 a~~lglf~~L~~~~~~-~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~  112 (359)
                      +.+..|+..|... ++ .+.++||+.+|+   ++..+.+.+..|.+.|+++.....      ...|.+|+.|+ ++....
T Consensus         3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~l~~G~   72 (492)
T PLN02853          3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK------RETWVLTEEGKKYAAEGS   72 (492)
T ss_pred             hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHcCC
Confidence            4566677778753 44 799999999999   689999999999999999877531      46899999998 666655


Q ss_pred             C
Q 043623          113 P  113 (359)
Q Consensus       113 ~  113 (359)
                      |
T Consensus        73 P   73 (492)
T PLN02853         73 P   73 (492)
T ss_pred             H
Confidence            5

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.25  E-value=1.3  Score=42.43  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             CCCceEEeCCCCC---CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          236 TDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       236 ~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      .++|+++.+++.+   ..|  ++|.+++..++--+++++..+.++.+.+.++|   ||+++.-....+.
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~  339 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP  339 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence            6999999999887   233  49999999999888999999999999999999   9999987766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=85.23  E-value=1.1  Score=39.13  Aligned_cols=55  Identities=20%  Similarity=0.445  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      ...+|...++..|++.|... +|+.+.|||+++|+   .+.-+..-+..|+..|++..+
T Consensus        16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~   70 (308)
T COG4189          16 VLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTE   70 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeee
Confidence            34567778888899999874 89999999999999   478888899999999999865

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=85.12  E-value=0.86  Score=35.45  Aligned_cols=51  Identities=18%  Similarity=0.300  Sum_probs=38.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCC--CCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQ--PNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~--~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +.-|++.|...+++.|+++|.+++.-.  ..+..-+-|.|+.|+..|++.+..
T Consensus         3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~   55 (116)
T cd07153           3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE   55 (116)
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence            344667776545799999999998321  115688999999999999999875

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.07  E-value=3.2  Score=36.44  Aligned_cols=94  Identities=20%  Similarity=0.382  Sum_probs=65.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC----CCC-----eEEEeechHHHhcCCCCCCceEEeCCCCCC---------CC--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF----PSI-----KCSVLELPHVIADLPETDNLKFIAGDMNQS---------IP--  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~~-----~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~---------~~--  251 (359)
                      +.+..+++|+....|.++.-+.++.    |+.     +++.+|+..|..    -+.|.-+.+|+.++         +.  
T Consensus        39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge  114 (294)
T KOG1099|consen   39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE  114 (294)
T ss_pred             HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence            5677899999999999998887764    211     388999876654    35677788888762         22  


Q ss_pred             CccEEEecc-----hhccCChh----HHHHHHHHHHHhcCCCCCCceEEE
Q 043623          252 SADAFLFKL-----IFHDYDDE----VCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       252 ~~D~i~~~~-----vlh~~~d~----~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .+|+|++-.     -+|+++.-    -....|.-...+|+|   ||.++-
T Consensus       115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa  161 (294)
T KOG1099|consen  115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA  161 (294)
T ss_pred             CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence            389999876     46766532    223445555668999   887764

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=85.04  E-value=0.82  Score=45.39  Aligned_cols=67  Identities=22%  Similarity=0.333  Sum_probs=51.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh-cCCC
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL-KDKP  113 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~-~~~~  113 (359)
                      +..++..|... ++.|..+||+.+++   ++..+.++++.|.+.|++.....      ....|.+|+.|+.+. ...|
T Consensus         8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~------~~~~i~LTeeG~~~~~~g~p   75 (489)
T PRK04172          8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER------VEEVYVLTEEGKKYAEEGLP   75 (489)
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee------eEEEEEECHHHHHHHHhcCH
Confidence            44555666553 68999999999999   68999999999999999998752      025799999998444 4443

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=84.86  E-value=1.3  Score=37.27  Aligned_cols=63  Identities=14%  Similarity=0.111  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc--CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           25 SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL--EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        25 ~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      ..|..-+++..+.+.=        +..++++||+++  ++   .+.-++.-|+.|..+|++.+++        +|.|..|
T Consensus        22 ~~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~--------~g~y~~t   82 (171)
T PF14394_consen   22 SSWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG--------DGKYVQT   82 (171)
T ss_pred             hhhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC--------CCcEEEe
Confidence            3455555555544321        334899999999  99   5899999999999999999997        5799999


Q ss_pred             ccch
Q 043623          103 SASK  106 (359)
Q Consensus       103 ~~~~  106 (359)
                      ..+.
T Consensus        83 ~~~l   86 (171)
T PF14394_consen   83 DKSL   86 (171)
T ss_pred             ccee
Confidence            7543

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.82  E-value=16  Score=28.46  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCCchH-HHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCC----CCCccEEEecchhccCChh
Q 043623          194 GLSSLVEVGGGTGS-FARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQS----IPSADAFLFKLIFHDYDDE  268 (359)
Q Consensus       194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~----~~~~D~i~~~~vlh~~~d~  268 (359)
                      ..++|++||-|.=. .+..|+++  ++.++..|+.+-  .+  ...+.++.-|.++|    +.++|+|.+-.     +++
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp   81 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP   81 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence            45699999988764 44455554  367888888443  33  26788999999985    34688888764     456


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +....+-.+.+++     |..++|.-..
T Consensus        82 El~~~ildva~aV-----ga~l~I~pL~  104 (129)
T COG1255          82 ELQSAILDVAKAV-----GAPLYIKPLT  104 (129)
T ss_pred             HHHHHHHHHHHhh-----CCCEEEEecC
Confidence            6777777788777     4567766544

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=84.57  E-value=2.2  Score=32.06  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhh-hcCCcc-------cCHHH
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMT-CVPGIE-------RSEKE  330 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~-------~t~~e  330 (359)
                      .+|-|++.++..++|+++....+     +++++.=.  |..   +       .+.+ +... .+.+..       -..++
T Consensus         3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifTfA--P~T---~-------~L~~m~~iG~lFP~~dRsp~i~~~~e~~   65 (97)
T PF07109_consen    3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFTFA--PRT---P-------LLALMHAIGKLFPRPDRSPRIYPHREED   65 (97)
T ss_pred             ceEeccCHHHHHHHHHHHHHhcc-----CcEEEEEC--CCC---H-------HHHHHHHHhccCCCCCCCCcEEEeCHHH
Confidence            46667888899999999987664     56665311  111   1       1111 1111 122222       26889


Q ss_pred             HHHHHHhcCCceeeEEecC--Ccce-EEEEE
Q 043623          331 WERLFFDAGFTSYKITPLL--GLRS-FIEVY  358 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~--~~~~-~i~~~  358 (359)
                      +.+.++++||++.+...+.  ++.+ ++|++
T Consensus        66 l~~~l~~~g~~~~r~~ris~gFY~S~llE~~   96 (97)
T PF07109_consen   66 LRRALAAAGWRIGRTERISSGFYISQLLEAV   96 (97)
T ss_pred             HHHHHHhCCCeeeecccccCcChHHHHhhcc
Confidence            9999999999999887773  3333 55543

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=84.50  E-value=1.3  Score=42.90  Aligned_cols=44  Identities=14%  Similarity=0.267  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      ++|.|.++|++++++   +++.++++|+.|...|++.+.+        ++.|.+.
T Consensus       308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~--------~g~~~l~  351 (412)
T PRK04214        308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE--------RGQWVLA  351 (412)
T ss_pred             CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC--------CCceEec
Confidence            479999999999999   5799999999999999999765        4567665

>COG3413 Predicted DNA binding protein [General function prediction only]

Probab=84.00  E-value=1.6  Score=38.14  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 043623           28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRL   76 (359)
Q Consensus        28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~   76 (359)
                      .-.+|+.|.++|-||. +   ...+..+||+.+|+.   +..+...||.
T Consensus       160 Q~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGIS---kst~~ehLRr  201 (215)
T COG3413         160 QLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGIS---KSTLSEHLRR  201 (215)
T ss_pred             HHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCC---HHHHHHHHHH
Confidence            4569999999999997 4   579999999999994   4555555544

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=83.74  E-value=1.7  Score=39.21  Aligned_cols=200  Identities=13%  Similarity=0.135  Sum_probs=102.8

Q ss_pred             CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccch
Q 043623           52 TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITP  131 (359)
Q Consensus        52 t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  131 (359)
                      +.-.|+....+   ..+.+..+++.|...|++..+.         +...+|..|+.++..-  .++..-.+.+       
T Consensus        36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~---------g~v~~TekG~E~~e~~--gi~~~~~~~C-------   94 (354)
T COG1568          36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE---------GGVELTEKGEELAEEL--GIKKKYDYTC-------   94 (354)
T ss_pred             chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec---------CcEeehhhhHHHHHHh--CCCccccccc-------
Confidence            78888888777   4688999999999999999996         5599999998777531  2221111110       


Q ss_pred             hhhHHHHHccCCCC-ChhhhccCCChhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHH
Q 043623          132 GHYLSRWLRGNELP-DPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFAR  210 (359)
Q Consensus       132 ~~~L~~~l~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~  210 (359)
                           ++..+.|-+ .+|+..+ ..+-++....|+-...|.+....-......++--+..+--.++.|+-+|- --..++
T Consensus        95 -----~~CeGrgi~l~~f~dll-~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGD-DDLtsi  167 (354)
T COG1568          95 -----ECCEGRGISLQAFKDLL-EKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGD-DDLTSI  167 (354)
T ss_pred             -----cCcCCccccchhHHHHH-HHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEcC-chhhHH
Confidence                 111101110 0011000 11222222223322233332211110000000001111224578999993 333333


Q ss_pred             HH-HHHCCCCeEEEeechH-HHhcC----CC--CCCceEEeCCCCCCCCC-----ccEEEecchhccCChhHHHHHHHHH
Q 043623          211 II-SEAFPSIKCSVLELPH-VIADL----PE--TDNLKFIAGDMNQSIPS-----ADAFLFKLIFHDYDDEVCLKLLKNC  277 (359)
Q Consensus       211 ~l-~~~~p~~~~~~~D~~~-~i~~a----~~--~~rv~~~~~d~~~~~~~-----~D~i~~~~vlh~~~d~~~~~iL~~~  277 (359)
                      ++ +...|. ++.++|+.+ .+.-.    ++  .++|+.+..|..+|+|+     ||+++.--.-   +-.....+|.+=
T Consensus       168 a~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~FlgRG  243 (354)
T COG1568         168 ALALTGMPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLGRG  243 (354)
T ss_pred             HHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHhcc
Confidence            33 333454 788889843 33322    22  57799999999998883     8987653210   112233455555


Q ss_pred             HHhcCC
Q 043623          278 REAVAS  283 (359)
Q Consensus       278 ~~~L~p  283 (359)
                      ..+||.
T Consensus       244 I~tLkg  249 (354)
T COG1568         244 IATLKG  249 (354)
T ss_pred             HHHhcC
Confidence            667765

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=83.59  E-value=0.74  Score=32.94  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=23.4

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHh
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLD   78 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~   78 (359)
                      |+..|+. |.|+|+++||..+|+   ....++..|..+-
T Consensus        29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~p   63 (77)
T PF12324_consen   29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAMP   63 (77)
T ss_dssp             HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-T
T ss_pred             HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhCC
Confidence            6677886 799999999999999   4666666665543

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=83.55  E-value=7.5  Score=30.84  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCc
Q 043623          272 KLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGL  351 (359)
Q Consensus       272 ~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~  351 (359)
                      .+|+++++.++|   ||.+.-..                                ....+++-|.++||.+.++...++-
T Consensus        71 e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~K  115 (124)
T PF05430_consen   71 ELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGRK  115 (124)
T ss_dssp             HHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred             HHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence            679999999999   66554311                                1234688899999999888877777


Q ss_pred             ceEEEEEC
Q 043623          352 RSFIEVYL  359 (359)
Q Consensus       352 ~~~i~~~~  359 (359)
                      ..++.|.|
T Consensus       116 r~~~~a~~  123 (124)
T PF05430_consen  116 REMLRAVK  123 (124)
T ss_dssp             SEEEEEEC
T ss_pred             chheEEEc
Confidence            77777765

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term

Probab=83.44  E-value=1.6  Score=34.16  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .++|++|||+.+.+   +++.++.+|+.+...|.++..+
T Consensus        18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p   53 (115)
T PF12793_consen   18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP   53 (115)
T ss_pred             cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence            67899999999999   6899999999999999999996

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=83.37  E-value=5.3  Score=31.69  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCchH-HHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCC----CCccEEEecchhccCChh
Q 043623          194 GLSSLVEVGGGTGS-FARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSI----PSADAFLFKLIFHDYDDE  268 (359)
Q Consensus       194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~----~~~D~i~~~~vlh~~~d~  268 (359)
                      +..+|++||-|.=. .+..|.+.  ++.+++.|+.+.  .+  ...+.++.-|.++|-    .++|+|.+-+     ++.
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~   81 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP   81 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred             CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence            35699999988764 44455555  378999998433  22  377999999999953    3589998876     334


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +.+.-+.++.+..     |.-++|....
T Consensus        82 El~~~il~lA~~v-----~adlii~pL~  104 (127)
T PF03686_consen   82 ELQPPILELAKKV-----GADLIIRPLG  104 (127)
T ss_dssp             TSHHHHHHHHHHH-----T-EEEEE-BT
T ss_pred             HHhHHHHHHHHHh-----CCCEEEECCC
Confidence            5566666677666     4567776543

; PDB: 2K4M_A.

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=83.27  E-value=1.2  Score=43.92  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=53.8

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCCC
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDKP  113 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~~  113 (359)
                      .+..|+..|...++..+.++||+.+|+   ++..+.+.+..|.+.|+++.....      ...|.+|+.|+ ++....|
T Consensus         7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~~~~G~P   76 (494)
T PTZ00326          7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK------SNTWTLTEEGEDYLKNGSP   76 (494)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHcCCH
Confidence            344556666542257999999999999   689999999999999999877531      46899999998 6666555

>PHA02943 hypothetical protein; Provisional

Probab=83.25  E-value=1.2  Score=36.21  Aligned_cols=44  Identities=11%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|++.|.  .|+.|..|||+.+|+   +...++-.|..|...|.+.+..
T Consensus        15 eILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~   58 (165)
T PHA02943         15 KTLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE   58 (165)
T ss_pred             HHHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence            4556664  388999999999999   6899999999999999999885

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=81.90  E-value=2.3  Score=39.95  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=39.9

Q ss_pred             hChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC----C----CCeEEEeec
Q 043623          162 QNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF----P----SIKCSVLEL  226 (359)
Q Consensus       162 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~  226 (359)
                      ..|+....|.+..+...   -.....+.  .+.+..++++|.|+|.++..+++..    |    .+++..++.
T Consensus        50 TApels~lFGella~~~---~~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~  117 (370)
T COG1565          50 TAPELSQLFGELLAEQF---LQLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP  117 (370)
T ss_pred             echhHHHHHHHHHHHHH---HHHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence            34667777777654321   12222222  4556789999999999999887753    4    568888887

>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks

Probab=81.90  E-value=1  Score=32.24  Aligned_cols=48  Identities=13%  Similarity=0.225  Sum_probs=39.4

Q ss_pred             HcCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +..+++.++.+. .+.+-.+|++.++.   |++.+-..++.|...|++.+..
T Consensus         4 ~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~   52 (75)
T PF04182_consen    4 QYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS   52 (75)
T ss_pred             HHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence            444555664422 67899999999999   7899999999999999999885

This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=81.87  E-value=1.7  Score=39.21  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCC
Q 043623          208 FARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVAS  283 (359)
Q Consensus       208 ~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p  283 (359)
                      ++..|.++.++.++++.|. +..++.+.+.+-+.-...+ .+...++|+|+++-     |.....++|+++...+++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~   71 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP   71 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence            4677888889999999998 6666666443333333332 22344689999984     446678899999998888

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1846 MarR Transcriptional regulators [Transcription]

Probab=81.47  E-value=1.8  Score=33.56  Aligned_cols=71  Identities=17%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ...++.++..|... ++.+..+||+.+++   ++..+.++++.|...|++.+....+  |.-.-.+.+|+.|+.+..
T Consensus        21 t~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~--DrR~~~l~lT~~G~~~~~   91 (126)
T COG1846          21 TPPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPE--DRRAVLVRLTEKGRELLE   91 (126)
T ss_pred             CHHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcc--ccceeeEEECccHHHHHH
Confidence            33455566666653 34444999999999   6899999999999999999986311  001135788888875443

>COG1510 Predicted transcriptional regulators [Transcription]

Probab=81.22  E-value=1.4  Score=36.67  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           47 RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        47 ~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +++|+|++||++.+|+   +...+..-++-|...|++.+.-
T Consensus        38 s~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~   75 (177)
T COG1510          38 SRKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF   75 (177)
T ss_pred             cCCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence            3489999999999999   6789999999999999999873

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=80.96  E-value=1.5  Score=38.72  Aligned_cols=77  Identities=25%  Similarity=0.338  Sum_probs=44.7

Q ss_pred             HHHHHhcccccCCC--CeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhc--------CCC--------CCCceEEe
Q 043623          182 KLIIKDCKHIFDGL--SSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIAD--------LPE--------TDNLKFIA  243 (359)
Q Consensus       182 ~~l~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~--------a~~--------~~rv~~~~  243 (359)
                      ..++++..  ++++  .+|||.-+|-|.-+.-++..  ++++++++...++..        +..        ..||+++.
T Consensus        63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            34566654  4443  39999999999999988865  678999998444321        111        35899999


Q ss_pred             CCCCC--CCC--CccEEEecchh
Q 043623          244 GDMNQ--SIP--SADAFLFKLIF  262 (359)
Q Consensus       244 ~d~~~--~~~--~~D~i~~~~vl  262 (359)
                      +|..+  ..+  +||+|++-=.+
T Consensus       139 ~d~~~~L~~~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  139 GDALEYLRQPDNSFDVVYFDPMF  161 (234)
T ss_dssp             S-CCCHCCCHSS--SEEEE--S-
T ss_pred             CCHHHHHhhcCCCCCEEEECCCC
Confidence            99888  332  49999886444

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK13777 transcriptional regulator Hpr; Provisional

Probab=80.65  E-value=2.2  Score=36.46  Aligned_cols=67  Identities=16%  Similarity=0.175  Sum_probs=48.7

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ..++..|..+ ++.|..+||+.+++   +...+.++++-|...|++.+....+  |.=.-...+|+.|+.+..
T Consensus        48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~--DrR~~~I~LTekG~~l~~  114 (185)
T PRK13777         48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKED--DKRNTYIELTEKGEELLL  114 (185)
T ss_pred             HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCC--CCCeeEEEECHHHHHHHH
Confidence            3456666654 68999999999999   5678999999999999999874210  001124677888875553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=80.64  E-value=6.4  Score=37.22  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCC-C----CC-CC-CCccEEEecchh
Q 043623          195 LSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGD-M----NQ-SI-PSADAFLFKLIF  262 (359)
Q Consensus       195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d-~----~~-~~-~~~D~i~~~~vl  262 (359)
                      ..+|+-+|||. |.++..+++.+.-.++++.|. ++-++.|++   .+.+.....+ .    .+ .- ..+|+++=+.- 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            34999999997 666678888888789999998 777777765   1222222121 0    01 11 24899987765 


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                             ....+..+.++++|   ||++.++-....+
T Consensus       248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~  274 (350)
T COG1063         248 -------SPPALDQALEALRP---GGTVVVVGVYGGE  274 (350)
T ss_pred             -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence                   12468888899999   9999998776555

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=80.30  E-value=1.7  Score=36.32  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      ..+..|+++|.. ++..|..+||+++|+   ++..+.+=++.|...|++..-
T Consensus        14 ~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~   61 (164)
T PRK11169         14 RIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY   61 (164)
T ss_pred             HHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            357788888976 489999999999999   678999999999999999853

>PF13730 HTH_36: Helix-turn-helix domain

Probab=80.16  E-value=1.9  Score=28.49  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=27.1

Q ss_pred             CHHHHHhhcCCCCCCcchHHHHHHHHhccCce
Q 043623           52 TLPELVSALEFQPNKRNCLRRIMRLLDHSGFF   83 (359)
Q Consensus        52 t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l   83 (359)
                      |.+.||+.+|+   +.+-+.+.++.|...|++
T Consensus        27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence            89999999999   689999999999999985

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=80.07  E-value=1.8  Score=38.88  Aligned_cols=46  Identities=20%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|.+.|.+. +..++.|||+.+++   ++.-++|-|+.|.+.|++.+..
T Consensus         8 ~~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~   53 (251)
T PRK13509          8 QILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR   53 (251)
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence            3466777764 78999999999999   6789999999999999999886

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=80.01  E-value=1.6  Score=32.53  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=40.3

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .+.|+..|... +|-.+.-+|..+++   +...++..|+.|..+|++++..
T Consensus         9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~   55 (92)
T PF10007_consen    9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE   55 (92)
T ss_pred             HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence            34566667654 78999999999999   5799999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-91
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-88
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		1e-84
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		8e-82
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		8e-82
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-81
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		3e-44
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		1e-37
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		6e-34
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		1e-30
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		7e-25
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		1e-21
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		4e-17
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		4e-13
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		1e-10
1x19_A	359	Crystal Structure Of Bchu Involved In Bacteriochlor		2e-08
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		2e-04
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		8e-04

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 161/357 (45%), Positives = 237/357 (66%), Gaps = 3/357 (0%)
Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYK++ +++ S+ LK ++E+ IP+IIH  G+P+TL  LVS L+
Sbjct: 3   SSINNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQ 62
Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
               K + ++R+MR L H+GFF     +   E E EAYALT AS+LL+K    CL+P V 
Sbjct: 63  IPSTKVDNVQRLMRYLAHNGFFEII-TNQELENEEEAYALTVASELLVKGTELCLAPMVE 121
Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D    T  H L +W+   +L   F    G ++W +  +N E+N L+N  LASDS+M 
Sbjct: 122 CVLDPTLSTSFHNLKKWVYEEDLT-LFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMI 180
Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L +KDC  +F+GL S+V+VGGG G+  +II E FP + C V + P V+ +L  ++NL +
Sbjct: 181 NLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTY 240
Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM  S+P ADA L K + HD+ D+ C+K+LK C+EAV S   R KVI++D+V+NEKK
Sbjct: 241 VGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKK 300
Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL + + ++CV G ER+E+EW++LF +AGF  YKI+P  GL S IE+Y
Sbjct: 301 DENQLTQIKLLMN-VTISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  323 bits (827), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/357 (44%), Positives = 234/357 (65%), Gaps = 8/357 (2%)
Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYKH+ +++ S+ LK AVE+ IP+II   G+P++L  LVS L+
Sbjct: 3   SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQ 62
Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +K   +RR+MR L H+GFF          +E E+YALT AS+LL++    CL+P V 
Sbjct: 63  VPSSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVE 116
Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +L   F    G   W + ++N E+N  FN  +ASDS++ 
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLT-LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175
Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L  ++NL +
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235
Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM  SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D+V+++KK
Sbjct: 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295
Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL D + M C+ G ER+E+EW++LF +AGF  YKI+PL G  S IE+Y
Sbjct: 296 DENQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/357 (43%), Positives = 227/357 (63%), Gaps = 8/357 (2%)
Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYKH+ +++ S  LK AVE  IP+II   G+P++L  LVS L+
Sbjct: 3   SSINGRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQ 62
Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +K   +RR+ R L H+GFF          +E E+YALT AS+LL++    CL+P V 
Sbjct: 63  VPSSKIGNVRRLXRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPXVE 116
Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +L   F    G   W + ++N E+N  FN   ASDS++ 
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLT-LFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLI 175
Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L  ++NL +
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235
Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GD   SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D V+++KK
Sbjct: 236 VGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKK 295
Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL D +   C+ G ER+E+EW++LF +AGF  YKI+PL G  S IE+Y
Sbjct: 296 DENQVTQIKLLXD-VNXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score =  300 bits (768), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 161/355 (45%), Positives = 231/355 (65%), Gaps = 4/355 (1%)
Query: 8   DANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKR 67
           + +EL+ AQ HLYKHV +++SS+ LK A+ELGI D IH  G+P+TL EL S+L+  P+K 
Sbjct: 2   EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKV 61
Query: 68  NCLRRIMRLLDHSGFFSTTKVHNSREEENE--AYALTSASKLLLKDKPYCLSPFVLLVTD 125
           N L R +RLL H+GFF+ T V     +E E  AY+LT  SKLL+  KP CLS  V     
Sbjct: 62  NILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALH 121
Query: 126 AAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASDSQMAKL 183
            + +       +W   ++    F    G + W +  ++ E + L  F   +ASDS+M KL
Sbjct: 122 PSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKL 181
Query: 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA 243
           ++++ K +F+GL SLV+VGGGTG   ++I E FP +KC+V + P V+ +L   +NL F+ 
Sbjct: 182 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 241
Query: 244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303
           GDM +SIPSADA L K + HD++DE  LK+LKN +EA++      KVII+DI ++E  D 
Sbjct: 242 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDD 301
Query: 304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             +TE +L YD +M+T   G ER+++EWE+L +DAGF+SYKITP+ G +S IEVY
Sbjct: 302 RGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score =  300 bits (768), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 161/355 (45%), Positives = 231/355 (65%), Gaps = 4/355 (1%)
Query: 8   DANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKR 67
           + +EL+ AQ HLYKHV +++SS+ LK A+ELGI D IH  G+P+TL EL S+L+  P+K 
Sbjct: 3   EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKV 62
Query: 68  NCLRRIMRLLDHSGFFSTTKVHNSREEENE--AYALTSASKLLLKDKPYCLSPFVLLVTD 125
           N L R +RLL H+GFF+ T V     +E E  AY+LT  SKLL+  KP CLS  V     
Sbjct: 63  NILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALH 122
Query: 126 AAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASDSQMAKL 183
            + +       +W   ++    F    G + W +  ++ E + L  F   +ASDS+M KL
Sbjct: 123 PSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKL 182
Query: 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA 243
           ++++ K +F+GL SLV+VGGGTG   ++I E FP +KC+V + P V+ +L   +NL F+ 
Sbjct: 183 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 242
Query: 244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303
           GDM +SIPSADA L K + HD++DE  LK+LKN +EA++      KVII+DI ++E  D 
Sbjct: 243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDD 302
Query: 304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             +TE +L YD +M+T   G ER+++EWE+L +DAGF+SYKITP+ G +S IEVY
Sbjct: 303 RGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/353 (45%), Positives = 230/353 (65%), Gaps = 4/353 (1%)
Query: 10  NELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNC 69
           +EL+ AQ HLYKHV +++SS+ LK A+ELGI D IH  G+P+TL EL S+L+  P+K N 
Sbjct: 1   SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI 60
Query: 70  LRRIMRLLDHSGFFSTTKVHNSREEENE--AYALTSASKLLLKDKPYCLSPFVLLVTDAA 127
           L R +RLL H+GFF+ T V     +E E  AY+LT  SKLL+  KP CLS  V      +
Sbjct: 61  LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPS 120
Query: 128 FITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASDSQMAKLII 185
            +       +W   ++    F    G + W +  ++ E + L  F   +ASDS+M KL++
Sbjct: 121 SLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVL 180
Query: 186 KDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGD 245
           ++ K +F+GL SLV+VGGGTG   ++I E FP +KC+V + P V+ +L   +NL F+ GD
Sbjct: 181 QENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 240
Query: 246 MNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE 305
           M +SIPSADA L K + HD++DE  LK+LKN +EA++      KVII+DI ++E  D   
Sbjct: 241 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 300
Query: 306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           +TE +L YD +M+T   G ER+++EWE+L +DAGF+SYKITP+ G +S IEVY
Sbjct: 301 LTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%)
Query: 32  LKCAVELGIPDIIHKRGRP---VTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTK 87
           LK A+EL + +I+ K   P   ++  E+ + L    P     L R++RLL      + T 
Sbjct: 38  LKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTL 97
Query: 88  VHNSREEENEAYALTSASKLLLKDK-PYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPD 146
                 +    Y L    K L K++    L+PF+LL TD   + P  YL   +    +P 
Sbjct: 98  RELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIP- 156
Query: 147 PFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTG 206
            F   +G+NI+ Y   +H  N +FN+G++S+S +    I +  + F+GL+++V+VGGGTG
Sbjct: 157 -FNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTG 215
Query: 207 SFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYD 266
           + A +I   +PSI     +LPHVI D P    ++ + GDM   +P  DA   K I HD+ 
Sbjct: 216 AVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWS 275
Query: 267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP-GIE 325
           DE CLKLLKNC  A+       KVI+ + ++    D    T+  +  DALM+   P G E
Sbjct: 276 DEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKE 332
Query: 326 RSEKEWERLFFDAGFTSYKIT 346
           R+EKE++ L   +GF  +K+ 
Sbjct: 333 RTEKEFQALAMASGFRGFKVA 353

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 171/337 (50%), Gaps = 12/337 (3%)
Query: 16  QAHLYKHVLSYMS--SIFLKCAVELGIPDIIHKRGRPVTLP--ELVSAL-EFQPNKRNCL 70
           +A+L+   L+  S   + LK A+EL + +II K G    +   E+ S L    P+    L
Sbjct: 18  EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVML 77
Query: 71  RRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFI 129
            R++RLL      + +       +    Y L + +K L+K++    +S   L+  D   +
Sbjct: 78  DRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLM 137
Query: 130 TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCK 189
              ++L   +    +P  F   +G+  + Y   +  FN +FN+G++  S +    I +  
Sbjct: 138 ESWYHLKDAVLDGGIP--FNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 190 HIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQS 249
             F+GL SLV+VGGGTG+    I   +P+IK    +LPHVI D P    ++ + GDM  S
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEA 309
           IP ADA   K I HD+ DE CLK LKNC EA+  +    KVI+ + ++    D    T+ 
Sbjct: 256 IPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNG---KVIVAECILPVAPDSSLATKG 312
Query: 310 KLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKI 345
            +  D +M+   P G ER++KE+E L   AGF  +K+
Sbjct: 313 VVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKV 349

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 159/320 (49%), Gaps = 10/320 (3%)
Query: 32  LKCAVELGIPDI-IHKRGRPVTLPELVSAL--EFQPNKRNCLRRIMRLLDHSGFFSTTKV 88
           LK A+ELG+ +I +   G+ +T  E+ + L     P   + + RI+RLL      +    
Sbjct: 37  LKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVE 96
Query: 89  HNSREEENEAYALTSASKLLLKDK-PYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDP 147
                  + +Y      K L  ++    ++   L+  D   +   +YL   +    +P  
Sbjct: 97  EGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIP-- 154
Query: 148 FVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGS 207
           F   +G++ + Y   +  FN +FN+G+ + S +    + +  H F+GL +LV+VGGG G+
Sbjct: 155 FNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGA 214
Query: 208 FARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDD 267
               I+  +P+IK    +LPHVI++ P+   +  + GDM + +PS D  L K I HD+ D
Sbjct: 215 TVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSD 274
Query: 268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP-GIER 326
           + C  LLKNC +A+ +     KV++V  ++    +    ++     D +M+   P G ER
Sbjct: 275 QHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRER 331
Query: 327 SEKEWERLFFDAGFTSYKIT 346
            E+E++ L   AGFT  K T
Sbjct: 332 YEREFQALARGAGFTGVKST 351

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 165/328 (50%), Gaps = 25/328 (7%)
Query: 32  LKCAVELGIPDIIHKRGRP---VTLPELVSALEFQPNKR---NCLRRIMRLL-DHSGFFS 84
           L  A++L + +II K   P   ++  E+ S L          N L R++RLL  +S   S
Sbjct: 41  LNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 100
Query: 85  TTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNEL 144
           TT+       E   Y L+   K L+ D+         L +   F+     L  W+   E 
Sbjct: 101 TTRTIEDGGAE-RVYGLSMVGKYLVPDESRGY-----LASFTTFLCYPALLQVWMNFKEA 154
Query: 145 P-----DPFVTGHGINIWGYAEQNHEFNNLFNQGLAS--DSQMAKLIIKDCKHIFDGLSS 197
                 D F   HG+  + +  ++ + N +FN+ +     ++M +++  +    F+G+S+
Sbjct: 155 VVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML--EIYTGFEGIST 212
Query: 198 LVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFL 257
           LV+VGGG+G    +I   +P IK    +LP VI + P    ++ + GDM  S+P  DA +
Sbjct: 213 LVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMI 272
Query: 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM 317
            K + H++ DE C++ L NC +A++ +    KVIIV+ ++ E+ +  E ++     D LM
Sbjct: 273 LKAVCHNWSDEKCIEFLSNCHKALSPNG---KVIIVEFILPEEPNTSEESKLVSTLDNLM 329
Query: 318 MTCVPGIERSEKEWERLFFDAGFTSYKI 345
              V G ER+EK++E+L   +GF+ +++
Sbjct: 330 FITVGGRERTEKQYEKLSKLSGFSKFQV 357

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 108/200 (54%), Gaps = 3/200 (1%)
Query: 146 DPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGT 205
           D F   HG+  + +  ++ + N +FN+              +    F+G+S+LV+VGGG+
Sbjct: 161 DLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGS 220
Query: 206 GSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDY 265
           G    +I   +P IK    +LP VI + P    ++ + GD   S+P  DA + K + H++
Sbjct: 221 GRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNW 280
Query: 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIE 325
            DE C++ L NC +A++ +    KVIIV+ ++ E+ +  E ++     D L    V G E
Sbjct: 281 SDEKCIEFLSNCHKALSPNG---KVIIVEFILPEEPNTSEESKLVSTLDNLXFITVGGRE 337
Query: 326 RSEKEWERLFFDAGFTSYKI 345
           R+EK++E+L   +GF+ +++
Sbjct: 338 RTEKQYEKLSKLSGFSKFQV 357

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 123/276 (44%), Gaps = 24/276 (8%)
Query: 70  LRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFI 129
           LRR++RLL          V +   E +  +ALT     L  D P      +L  TD  F 
Sbjct: 72  LRRVLRLL---------AVRDVVRESDGRFALTDKGAALRSDSPVPARAGILXFTDTXFW 122
Query: 130 TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCK 189
           T  H ++  L G E P  F    G ++  Y + + E   L+ +G  + S    LI+    
Sbjct: 123 TXSHRVASAL-GPERP-AFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHLILARAG 180
Query: 190 HIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIA----DLPE-TDNLKFIAG 244
             F    ++ +VGGG G F   +    P ++  +L+   V+A    D P+     K + G
Sbjct: 181 D-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEG 239
Query: 245 DMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP 304
           D  + +P AD  + K I H++ DE  +++L NCR  V  + GR  V+++D VV E  D  
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRR-VXPAHGR--VLVIDAVVPEGNDAH 296
Query: 305 EITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340
           +  E     D   +    G ER+  E E LF  AG 
Sbjct: 297 QSKEX----DFXXLAARTGQERTAAELEPLFTAAGL 328

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 45/331 (13%)
Query: 32  LKCAVELGIPDIIHKRGRPVT-LPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHN 90
           +  AVELG+P+++ +  R  T L E   A E    +   L   + + D  G         
Sbjct: 55  IHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGH-------- 106
Query: 91  SREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAF-ITPGHY-----LSRWLRGNEL 144
                ++ +A  + S +LL D      P   + TDA F   P H+     L+  +R  E 
Sbjct: 107 -----DDLFAQNALSAVLLPD------PASPVATDARFQAAPWHWRAWEQLTHSVRTGEA 155
Query: 145 PDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGG 204
              F   +G + W    ++ +   LFN+   S S      +    + F G ++ V++GGG
Sbjct: 156 S--FDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVA-AAYDFSGAATAVDIGGG 212
Query: 205 TGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQSIP-SADAF 256
            GS    + +AFP ++ ++LE P V  +  E        D  + + GD  ++IP  AD +
Sbjct: 213 RGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVY 272
Query: 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL 316
           L K + HD+DD+  +++L+    A        +++++D +++E+        + L  D L
Sbjct: 273 LIKHVLHDWDDDDVVRILRRIATAXKPD---SRLLVIDNLIDERP-----AASTLFVDLL 324
Query: 317 MMTCVPGIERSEKEWERLFFDAGFTSYKITP 347
           ++  V G ERSE E+  L   +G    +  P
Sbjct: 325 LLVLVGGAERSESEFAALLEKSGLRVERSLP 355

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 197 SLVEVGGGTGSFARIISEAFPSIKCSVLELPHVI-------ADLPETDNLKFIAGDMNQS 249
           S V+VGGG+G   + I +A PS +  +L+    +       + L   + +  + GDM Q 
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229
Query: 250 IPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE 308
           +PS  D +L   I  D D+   L+LL NCREA+A  DGR  V++++  ++  +  P    
Sbjct: 230 VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMA-GDGR--VVVIERTISASEPSP---- 282
Query: 309 AKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348
             +L+D  +     G  R+ +E   L    GF   +I  L
Sbjct: 283 MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDL 322

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 198 LVEVGGGTGSFARIISEAFPSIKCSVLELPHVIA------DLPETDNLKFIAGD-MNQSI 250
           + ++GGG G+ A+     +P  K +V ++P V+          E + + F  GD     +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 251 PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK 310
           P AD ++   + HD+ D  C  LL+          G   +++++ +++E +  P +T+  
Sbjct: 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGG---ILVIESLLDEDRRGPLLTQ-- 297
Query: 311 LLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI 345
            LY   M+    G ER+   +  L   AGF  ++ 
Sbjct: 298 -LYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF 331

>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 32/191 (16%)
Query: 127 AFITPGHY--LSRWLRGN-----ELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ 179
           AF+    Y  LS+ +RG      ++P P VT    N+  Y E+ H  N  F         
Sbjct: 130 AFLADDFYMGLSQAVRGQKNFKGQVPYPPVTRED-NL--YFEEIHRSNAKF--------- 177
Query: 180 MAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVI-------AD 232
             +L++++ K   DG+  +++VGGG G  +  + + FP +  ++L LP  I       A+
Sbjct: 178 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 235
Query: 233 LPETDNLKFIAGDM-NQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVI 291
               D ++ IA D+  +S P ADA LF  I +  ++++   + K   +A+ S  GR  ++
Sbjct: 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG-GR--LL 292
Query: 292 IVDIVVNEKKD 302
           I+D+V+++ ++
Sbjct: 293 ILDMVIDDPEN 303

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 14/198 (7%)
Query: 152 HGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARI 211
           +G   W     +    + F+  ++ D  +A     D  + +  +  +++VGGG G     
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA-YDWSAVRHVLDVGGGNGGMLAA 199
Query: 212 ISEAFPSIKCSVLELP-------HVIADLPETDNLKFIAGDMNQSIP-SADAFLFKLIFH 263
           I+   P ++ +++EL           AD    D +    GD  + +P +AD  L   +  
Sbjct: 200 IALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 259
Query: 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG 323
           ++ DE  L +L+ C  A+    GR  V+    V  +  D+   T    L D  M+T + G
Sbjct: 260 NWSDEDALTILRGCVRALEPG-GRLLVLDRADVEGDGADRFFST----LLDLRMLTFMGG 314
Query: 324 IERSEKEWERLFFDAGFT 341
             R+  E   L   AG  
Sbjct: 315 RVRTRDEVVDLAGSAGLA 332

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 142 NELPDPFVTGHGI-----------NIWGYAEQNHEFNNLF--NQGLASDSQMAKLIIKDC 188
             LPD   TG              ++ G  +    F++L   +Q +A D+  A     + 
Sbjct: 125 TRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNV 184
Query: 189 KHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVI-------ADLPETDNLKF 241
           +H+ D       VGGG G FA  I+   P +  +VLE+   +        D   +D +  
Sbjct: 185 RHVLD-------VGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDV 237
Query: 242 IAGDMNQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300
           + GD  + +P  ADA +   +  ++ D   +++L  C EA+    GR       I+++E+
Sbjct: 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GR-------ILIHER 289
Query: 301 KDKPE--ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348
            D  E    E     D  M+  + G  R+ ++W+ L   AG    ++  L
Sbjct: 290 DDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 339

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-142
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-142
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-129
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-128
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-126
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-125
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-119
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-115
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-113
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-113
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-112
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-107
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	4e-90
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	4e-83
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	8e-80
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	7e-06
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	3e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-04

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  406 bits (1045), Expect = e-142
 Identities = 162/356 (45%), Positives = 231/356 (64%), Gaps = 4/356 (1%)

Query: 7   EDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNK 66
            + +EL+ AQ HLYKHV +++SS+ LK A+ELGI D IH  G+P+TL EL S+L+  P+K
Sbjct: 2   SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK 61

Query: 67  RNCLRRIMRLLDHSGFFSTTKVH--NSREEENEAYALTSASKLLLKDKPYCLSPFVLLVT 124
            N L R +RLL H+GFF+ T V      EEE  AY+LT  SKLL+  KP CLS  V    
Sbjct: 62  VNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGAL 121

Query: 125 DAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL--FNQGLASDSQMAK 182
             + +       +W   ++    F    G + W +  ++ E + L  F   +ASDS+M K
Sbjct: 122 HPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK 181

Query: 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFI 242
           L++++ K +F+GL SLV+VGGGTG   ++I E FP +KC+V + P V+ +L   +NL F+
Sbjct: 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 241

Query: 243 AGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD 302
            GDM +SIPSADA L K + HD++DE  LK+LKN +EA++      KVII+DI ++E  D
Sbjct: 242 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 301

Query: 303 KPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
              +TE +L YD +M+T   G ER+++EWE+L +DAGF+SYKITP+ G +S IEVY
Sbjct: 302 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  405 bits (1043), Expect = e-142
 Identities = 158/357 (44%), Positives = 232/357 (64%), Gaps = 8/357 (2%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
           SSI     +E+F+AQA LYKH+ +++ S+ LK AVE+ IP+II   G+P++L  LVS L+
Sbjct: 3   SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQ 62

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +K   +RR+MR L H+GFF          +E E+YALT AS+LL++    CL+P V 
Sbjct: 63  VPSSKIGNVRRLMRYLAHNGFFEII------TKEEESYALTVASELLVRGSDLCLAPMVE 116

Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
            V D       H L +W+   +    F    G   W + ++N E+N  FN  +ASDS++ 
Sbjct: 117 CVLDPTLSGSYHELKKWIYEED-LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI 175

Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKF 241
            L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L  ++NL +
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235

Query: 242 IAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
           + GDM  SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D+V+++KK
Sbjct: 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295

Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
           D+ ++T+ KLL D  M  C+ G ER+E+EW++LF +AGF  YKI+PL G  S IE+Y
Sbjct: 296 DENQVTQIKLLMDVNMA-CLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  374 bits (963), Expect = e-129
 Identities = 112/363 (30%), Positives = 177/363 (48%), Gaps = 11/363 (3%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRP---VTLPELVS 58
               +   +   +A     +   + +  + LK A+EL + +I+ K   P   ++  E+ +
Sbjct: 8   EIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAA 67

Query: 59  ALEFQ-PNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKP-YCL 116
            L    P     L R++RLL      + T       +    Y L    K L K++    L
Sbjct: 68  QLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSL 127

Query: 117 SPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLAS 176
           +PF+LL TD   + P  YL   +       PF   +G+NI+ Y   +H  N +FN+G++S
Sbjct: 128 APFLLLATDKVLLEPWFYLKDAILEG--GIPFNKAYGMNIFDYHGTDHRINKVFNKGMSS 185

Query: 177 DSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPET 236
           +S +    I +  + F+GL+++V+VGGGTG+ A +I   +PSI     +LPHVI D P  
Sbjct: 186 NSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF 245

Query: 237 DNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296
             ++ + GDM   +P  DA   K I HD+ DE CLKLLKNC  A     G  KVI+ + +
Sbjct: 246 SGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAA-LPDHG--KVIVAEYI 302

Query: 297 VNEKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKITPLLGLRSFI 355
           +    D    T+  +  DALM+   P G ER+EKE++ L   +GF  +K+         +
Sbjct: 303 LPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVM 362

Query: 356 EVY 358
           E  
Sbjct: 363 EFL 365

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  371 bits (954), Expect = e-128
 Identities = 92/363 (25%), Positives = 163/363 (44%), Gaps = 12/363 (3%)

Query: 4   IEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRP---VTLPELVSAL 60
           I          A         + +    L  A++L + +II K   P   ++  E+ S L
Sbjct: 13  ISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKL 72

Query: 61  EFQPNKRNC---LRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKP-YCL 116
                  +    L R++RLL      ++T            Y L+   K L+ D+    L
Sbjct: 73  PASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYL 132

Query: 117 SPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLAS 176
           + F   +   A +         +   +  D F   HG+  + +  ++ + N +FN+ +  
Sbjct: 133 ASFTTFLCYPALLQVWMNFKEAVVDED-IDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD 191

Query: 177 DSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPET 236
                   + +    F+G+S+LV+VGGG+G    +I   +P IK    +LP VI + P  
Sbjct: 192 VCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251

Query: 237 DNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296
             ++ + GDM  S+P  DA + K + H++ DE C++ L NC +A  S +G  KVIIV+ +
Sbjct: 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKA-LSPNG--KVIIVEFI 308

Query: 297 VNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT-PLLGLRSFI 355
           + E+ +  E ++     D LM   V G ER+EK++E+L   +GF+ +++          +
Sbjct: 309 LPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 368

Query: 356 EVY 358
           E Y
Sbjct: 369 EFY 371

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  364 bits (937), Expect = e-126
 Identities = 87/362 (24%), Positives = 146/362 (40%), Gaps = 29/362 (8%)

Query: 2   SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE 61
                    +  Q+   LY+  + Y  +  L+ A  +G+ D +     P T  EL +A  
Sbjct: 9   PPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV--DGPRTPAELAAATG 66

Query: 62  FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVL 121
              +    LRR++RLL                E +  +ALT     L  D P      +L
Sbjct: 67  TDAD---ALRRVLRLLAVRDVV---------RESDGRFALTDKGAALRSDSPVPARAGIL 114

Query: 122 LVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA 181
           + TD  F T  H ++  L        F    G ++  Y + + E   L+ +G+ + S   
Sbjct: 115 MFTDTMFWTMSHRVASALGPER--PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAE 172

Query: 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-----T 236
            LI+      F    ++ +VGGG G F   +    P ++  +L+   V+A          
Sbjct: 173 HLILARA-GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVA 231

Query: 237 DNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296
              K + GD  + +P AD  + K I H++ DE  +++L NCR  +  + G  +V+++D V
Sbjct: 232 GRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVM-PAHG--RVLVIDAV 288

Query: 297 VNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIE 356
           V E  D  +        D +M+    G ER+  E E LF  AG    ++     + S   
Sbjct: 289 VPEGNDAHQSK----EMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAV 344

Query: 357 VY 358
             
Sbjct: 345 GV 346

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  364 bits (935), Expect = e-125
 Identities = 100/364 (27%), Positives = 172/364 (47%), Gaps = 11/364 (3%)

Query: 1   MSSIEVEDA-NELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRG-RPVTLPELVS 58
           M S   + A +    A     +   S +  + LK A+ELG+ +I+   G + +T  E+ +
Sbjct: 5   MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAA 64

Query: 59  ALEFQ--PNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKP-YC 115
            L     P   + + RI+RLL      +           + +Y      K L  ++    
Sbjct: 65  KLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVS 124

Query: 116 LSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLA 175
           ++   L+  D   +   +YL   +       PF   +G++ + Y   +  FN +FN+G+ 
Sbjct: 125 MAALALMNQDKVLMESWYYLKDAVLDG--GIPFNKAYGMSAFEYHGTDPRFNRVFNEGMK 182

Query: 176 SDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE 235
           + S +    + +  H F+GL +LV+VGGG G+    I+  +P+IK    +LPHVI++ P+
Sbjct: 183 NHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ 242

Query: 236 TDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295
              +  + GDM + +PS D  L K I HD+ D+ C  LLKNC +A+  + G  KV++V  
Sbjct: 243 FPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDAL-PAHG--KVVLVQC 299

Query: 296 VVNEKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKITPLLGLRSF 354
           ++    +    ++     D +M+   P G ER E+E++ L   AGFT  K T +      
Sbjct: 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWA 359

Query: 355 IEVY 358
           IE  
Sbjct: 360 IEFT 363

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  349 bits (898), Expect = e-119
 Identities = 85/363 (23%), Positives = 156/363 (42%), Gaps = 32/363 (8%)

Query: 5   EVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQP 64
           E         A+  +   +     +  +  AVELG+P+++ +   P T   L  A     
Sbjct: 28  ENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG--PRTATALAEATGAHE 85

Query: 65  NKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVT 124
                LRR++RLL   G F            ++ +A  + S +LL D    ++       
Sbjct: 86  QT---LRRLLRLLATVGVFD-------DLGHDDLFAQNALSAVLLPDPASPVATDARFQA 135

Query: 125 DAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLI 184
                     L+  +R  E    F   +G + W    ++ +   LFN+ + S S      
Sbjct: 136 APWHWRAWEQLTHSVRTGE--ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQ 193

Query: 185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TD 237
           +    + F G ++ V++GGG GS    + +AFP ++ ++LE P V  +  E        D
Sbjct: 194 V-AAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLAD 252

Query: 238 NLKFIAGDMNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296
             + + GD  ++IP  AD +L K + HD+DD+  +++L+    A+   D   +++++D +
Sbjct: 253 RCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM-KPDS--RLLVIDNL 309

Query: 297 VNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL-LGLRSFI 355
           ++E+        + L  D L++  V G ERSE E+  L   +G    +  P   G    +
Sbjct: 310 IDERPA-----ASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIV 364

Query: 356 EVY 358
           E+ 
Sbjct: 365 EIR 367

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  335 bits (862), Expect = e-115
 Identities = 82/357 (22%), Positives = 138/357 (38%), Gaps = 35/357 (9%)

Query: 10  NELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNC 69
           N    A  +L + V     S  +  A  LG+ D+I       +   L +A+         
Sbjct: 3   NSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIE--SGIDSDETLAAAVGSDAE---R 57

Query: 70  LRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFI 129
           + R+MRLL     F        + +  + YA T  S LL +D        VL   +  F 
Sbjct: 58  IHRLMRLLVAFEIF--------QGDTRDGYANTPTSHLL-RDVEGSFRDMVLFYGEE-FH 107

Query: 130 TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCK 189
                    L        F    G + + Y ++  +    F   + + +     I +   
Sbjct: 108 AAWTPACEALLSGT--PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD 165

Query: 190 HIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFI 242
             F G  S V+VGGG+G   + I +A PS +  +L+    +    +        + +  +
Sbjct: 166 --FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLV 222

Query: 243 AGDMNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301
            GDM Q +PS  D +L   I  D D+   L+LL NCREA+ + DG  +V++++  ++  +
Sbjct: 223 GGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAM-AGDG--RVVVIERTISASE 279

Query: 302 DKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358
             P      +L+D  +     G  R+ +E   L    GF   +I  L      I   
Sbjct: 280 PSP----MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAA 332

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  332 bits (854), Expect = e-113
 Identities = 69/374 (18%), Positives = 126/374 (33%), Gaps = 36/374 (9%)

Query: 1   MSSIEV-EDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSA 59
           MSS    E      Q    L K++ + ++ + L+ A  L + D +       TL  L   
Sbjct: 1   MSSSSPGEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADR 58

Query: 60  LEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPF 119
            +  P     L R++R L   G           E++      T    LL    P     +
Sbjct: 59  TDTHPQ---ALSRLVRHLTVVGVLEGG------EKQGRPLRPTRLGMLLADGHPAQQRAW 109

Query: 120 VLLVTDAAFITPG-HYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDS 178
           + L    +        L   +R       +   +G   W     +    + F+  ++ D 
Sbjct: 110 LDLNGAVSHADLAFTGLLDVVR--TGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDE 167

Query: 179 QM-AKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-- 235
            +  +         +  +  +++VGGG G     I+   P ++ +++EL           
Sbjct: 168 DLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRF 225

Query: 236 -----TDNLKFIAGDMNQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREK 289
                 D +    GD  + +P +AD  L   +  ++ DE  L +L+ C  A+    G  +
Sbjct: 226 ADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL-EPGG--R 282

Query: 290 VIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL 349
           ++++D    E            L D  M+T + G  R+  E   L   AG          
Sbjct: 283 LLVLDRADVEGDGADRFFST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSG 340

Query: 350 GLR-----SFIEVY 358
                   S +E  
Sbjct: 341 STTLPFDFSILEFT 354

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  330 bits (849), Expect = e-113
 Identities = 68/354 (19%), Positives = 131/354 (37%), Gaps = 38/354 (10%)

Query: 14  QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRI 73
           +A     + +    + + ++ A  L + D I       T  E+ SA     +    L R+
Sbjct: 4   RAAHIGLRALADLATPMAVRVAATLRVADHIA--AGHRTAAEIASAAGAHADS---LDRL 58

Query: 74  MRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPG- 132
           +R L   G F+         +    Y LT   + L  D       ++ + +       G 
Sbjct: 59  LRHLVAVGLFT--------RDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGF 110

Query: 133 HYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM-AKLIIKDCKHI 191
             L+  +R  +    +   +G + W     +   +  F+  ++   ++    I       
Sbjct: 111 VELAHSIRTGQ--PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-- 166

Query: 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAG 244
           +  L  +V+VGGG+G     +  A   +  +VL+L    +           +   + + G
Sbjct: 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVG 226

Query: 245 DMNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303
                +P+ A  ++   + HD+DD   + +L+ C EA   S G   V++++ V  ++   
Sbjct: 227 SFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA-GSGG--VVLVIEAVAGDEH-- 281

Query: 304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEV 357
                A    D  M+T   G ERS  E   L   AG       P +   S +E+
Sbjct: 282 -----AGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP-ISYVSIVEM 329

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  329 bits (846), Expect = e-112
 Identities = 66/373 (17%), Positives = 130/373 (34%), Gaps = 38/373 (10%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
            ++     A             + S  + + ++ A  L + D I       T+  L +  
Sbjct: 5   STAEPTVAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAART 62

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFV 120
           + +P     L R++R L   G           E+    +  T   +LL  D P     + 
Sbjct: 63  DTRPE---ALLRLIRHLVAIGLL--------EEDAPGEFVPTEVGELLADDHPAAQRAWH 111

Query: 121 LLVTDAAFITPG-HYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQ 179
            L    A        L   +R       + + +G   +       +    F+  LA D  
Sbjct: 112 DLTQAVARADISFTRLPDAIRTGR--PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQD 169

Query: 180 M-AKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--- 235
           +            +  +  +++VGGG G FA  I+   P +  +VLE+   +        
Sbjct: 170 VAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLK 227

Query: 236 ----TDNLKFIAGDMNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKV 290
               +D +  + GD  + +P  ADA +   +  ++ D   +++L  C EA+    G  ++
Sbjct: 228 DEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL-EPGG--RI 284

Query: 291 IIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLG 350
           +I +     +    E        D  M+  + G  R+ ++W+ L   AG    ++  L  
Sbjct: 285 LIHERDDLHENSFNEQF---TELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS 341

Query: 351 -----LRSFIEVY 358
                  S + + 
Sbjct: 342 PTIPYDLSLLVLA 354

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  317 bits (815), Expect = e-107
 Identities = 68/362 (18%), Positives = 138/362 (38%), Gaps = 37/362 (10%)

Query: 8   DANELFQAQAHLYKHVLS-YMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNK 66
             N+L        + V    +    +K A+EL +   +     P  L  L +     P +
Sbjct: 23  SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMA--EGPKDLATLAADTGSVPPR 80

Query: 67  RNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDA 126
              L  ++  L                 E+  ++LT  +  +    P   +     V  A
Sbjct: 81  ---LEMLLETLRQMRVI---------NLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKA 128

Query: 127 AFITPGHYLSRWLRGNELPDPFVTG-HGINIWGYAEQNHEFNNLFNQGLASDSQM-AKLI 184
                  +L+       L        +      Y     E N  F +   S+++   +L+
Sbjct: 129 M-----AFLADDFYMG-LSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLL 182

Query: 185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TD 237
           +++ K   DG+  +++VGGG G  +  + + FP +  ++L LP  I  + E        D
Sbjct: 183 LEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVAD 240

Query: 238 NLKFIAGDM-NQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296
            ++ IA D+  +S P ADA LF  I +  ++++   + K   +A+  S GR  ++I+D+V
Sbjct: 241 RMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR-SGGR--LLILDMV 297

Query: 297 VNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIE 356
           +++ ++      +  +  A M   V G  + +  ++ +    G+    +           
Sbjct: 298 IDDPENPNFDYLSHYILGAGMPFSVLG-FKEQARYKEILESLGYKDVTMVRKYDHLLVQA 356

Query: 357 VY 358
           V 
Sbjct: 357 VK 358

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  273 bits (699), Expect = 4e-90
 Identities = 64/353 (18%), Positives = 126/353 (35%), Gaps = 40/353 (11%)

Query: 15  AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIM 74
           + A  +  V +Y  S  +K AVEL +   I +     +   L    +        +R + 
Sbjct: 6   SPALFFNTVNAYQRSAAIKAAVELNVFTAISQG--IESSQSLAQKCQTSERG---MRMLC 60

Query: 75  RLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL-KDKPYCLSPFVLLVTDAAFITPGH 133
             L   GF           ++ E Y LTS S + L +   + +   +  +         +
Sbjct: 61  DYLVIIGFM---------TKQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFN 111

Query: 134 YLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM-AKLIIKDCKHIF 192
            L+  +           G  I+  G     H     F + ++      A+LI +      
Sbjct: 112 DLTAAVLKG--------GTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENK 163

Query: 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGD 245
                ++++    G F   +++  P+ +   ++   V+    E             IAG 
Sbjct: 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS 223

Query: 246 MNQS--IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303
             +       D  L     H +D   C +LL+  + A+A  +G+  VI+ D + N  +  
Sbjct: 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA-VEGK--VIVFDFIPNSDRIT 280

Query: 304 PEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKITPLLGLRSFI 355
           P        +  +M+   P G   +  E+E +F +AGF+  ++  L   +  +
Sbjct: 281 PPDA---AAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  256 bits (655), Expect = 4e-83
 Identities = 51/365 (13%), Positives = 113/365 (30%), Gaps = 34/365 (9%)

Query: 1   MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL 60
           MS    ++     +AQ    +     +     +  ++ GI  ++  +    TL E+    
Sbjct: 1   MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRT 60

Query: 61  EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFV 120
                     + ++      G             E + Y L  A   LL DK    +   
Sbjct: 61  GLTRYA---AQVLLEASLTIGTI---------LLEEDRYVLAKAGWFLLNDKM---ARVN 105

Query: 121 LLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQM 180
           +            +L   L         V G    I+    Q  E       G   D   
Sbjct: 106 MEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGF--DHFY 163

Query: 181 AKLIIKDCKHIFD--GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--- 235
           +         I        L+++GG TG +A    +    ++ ++++LP  +  + +   
Sbjct: 164 SDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTA 223

Query: 236 ----TDNLKFIAGDM---NQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR 287
               ++ +     ++   +   P+  DA         + +E  + +L    +++   D +
Sbjct: 224 GLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG-KDSK 282

Query: 288 EKVIIVDIVVNEKKDKPEITEAKLLY-DALMMTCVPGIERSEKEWERLFFDAGFTSYKIT 346
             V I++ + + ++ +        +      M           +  R   +AG    +I 
Sbjct: 283 --VYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQ 340

Query: 347 PLLGL 351
             +GL
Sbjct: 341 DNIGL 345

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  247 bits (632), Expect = 8e-80
 Identities = 55/361 (15%), Positives = 114/361 (31%), Gaps = 49/361 (13%)

Query: 11  ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCL 70
               +   L K    Y  S  L  AV   + D+        T  E+ ++      K    
Sbjct: 20  AALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT---GRTPAEVAASFGMVEGK---A 73

Query: 71  RRIMRLLDHSGFFSTTKVHNSREEENEAYALTS-ASKLLLKDKPYCLSPFVLLVTDAAFI 129
             ++  L   G            +E +A+  T+   + L       + P V         
Sbjct: 74  AILLHALAALGLL---------TKEGDAFRNTALTERYLTTTSADYIGPIVEH--QYLQW 122

Query: 130 TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCK 189
                L   LR  +                   +    + FN  +   SQ    ++ +  
Sbjct: 123 DNWPRLGEILRSEK-------PLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSE-L 174

Query: 190 HIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPET-------DNLKFI 242
            +F    +++++ GG G++   +    P +   + +LP       +T         ++F 
Sbjct: 175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFF 234

Query: 243 AGDMNQSIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298
             ++  +      +AD  +     H +D     +++ +    V    G   ++I+ + +N
Sbjct: 235 EKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK-PGGA--LLILTMTMN 291

Query: 299 EKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTS-----YKITPLLGLR 352
           + +  P ++     +   MM     G          +  DAG         + T L+G R
Sbjct: 292 DDRVTPALS---ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQR 348

Query: 353 S 353
           S
Sbjct: 349 S 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 65/415 (15%), Positives = 121/415 (29%), Gaps = 128/415 (30%)

Query: 10  NELFQAQAHLY----------KHVLSYMSSIFLKCAVELGIPDIIH-----KRGRPVTLP 54
             L + +              K  ++    + L   V+  +   I          P T+ 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 55  ELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPY 114
           E++  L +Q +     R      DHS         N +   +    + +  + LLK KPY
Sbjct: 200 EMLQKLLYQIDPNWTSR-----SDHS--------SNIKLRIHS---IQAELRRLLKSKPY 243

Query: 115 --CL------------SPF-----VLLVT----DAAFITPGHY----------------- 134
             CL            + F     +LL T       F++                     
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 135 ---LSRWL--RGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDC- 188
              L ++L  R  +LP   +T +   +   AE   +    ++     +      II+   
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 189 --------KHIFDGLSSLVEVGGGTGSFARIISEAFPS---IKCSVLELPHVIADLPETD 237
                   + +FD LS               +   FP    I   +L L  +  D+ ++D
Sbjct: 364 NVLEPAEYRKMFDRLS---------------V---FPPSAHIPTILLSL--IWFDVIKSD 403

Query: 238 NLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297
            +  +      S+         +          L+L        A      + I+    +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIY----LELKVKLENEYA----LHRSIVDHYNI 455

Query: 298 NEKKDKPEITEAKL---LYDALM--MTCVPGIERSEK--EWERLFFDAGFTSYKI 345
            +  D  ++    L    Y  +   +     IE  E+   +  +F D  F   KI
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLK---NIEHPERMTLFRMVFLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 62/402 (15%), Positives = 116/402 (28%), Gaps = 109/402 (27%)

Query: 1   MSSIEVEDANELFQAQAHLYKHV-------LSYMSSIFLKC-AVELGIPDIIHKRGRPVT 52
           ++         + +    L   +         + S+I L+  +++  +  ++  +     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 53  L--------PELVSALEFQPNKRNCLRRIM---RLLDHSGFF---STTKVHNSREEENEA 98
           L         +  +A         C  +I+   R           + T  H S +  +  
Sbjct: 247 LLVLLNVQNAKAWNAFNLS-----C--KILLTTR--FKQVTDFLSAATTTHISLDHHSMT 297

Query: 99  YALTSASKLLLK---DKPYCL-------SPFVL-LVTDAAFITPGHYLSRW--------- 138
                   LLLK    +P  L       +P  L ++  A  I  G  L+ W         
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDG--LATWDNWKHVNCD 353

Query: 139 ------------LRGNELPDPF----VTGHGINI--------WGYAEQNHEFNNLFNQGL 174
                       L   E    F    V     +I        W    ++     +    L
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM--VVVNKL 411

Query: 175 ASDSQMAKLIIKDCK----HIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVI 230
              S    L+ K  K     I      L        +  R I + +   K    +   +I
Sbjct: 412 HKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDDLI 465

Query: 231 ADLPETDN--LKFIAGDMNQSIPSADAFLFKLIFHDYD--DEVCLKLLKNCREAVASSDG 286
              P  D      I   +          LF+++F D+   ++   K+  +     AS   
Sbjct: 466 --PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGS- 519

Query: 287 REKVIIVDIVVNEKKDKPEITEAKLLYDAL---MMTCVPGIE 325
                I++ +   K  KP I +    Y+ L   ++  +P IE
Sbjct: 520 -----ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 66/421 (15%), Positives = 107/421 (25%), Gaps = 113/421 (26%)

Query: 8   DANELFQAQAHLYKHVLSYMSSIFLK---CAVELGIPDIIHKRGRPVTLPELVSALEFQP 64
           +  E      + YK +LS     F+    C     + D+     + +   E +  +    
Sbjct: 10  ETGE----HQYQYKDILSVFEDAFVDNFDCK---DVQDMP----KSILSKEEIDHIIMSK 58

Query: 65  NKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYA-LTSASKLLLKDKPYCLSPFV--- 120
           +  +   R+   L         K        N  Y  L S  K   +        ++   
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 121 -LLVTDAAFITPGH--------YLSRWLRGNEL-PDPFVTGHGI---------------- 154
             L  D       +         L + L   EL P   V   G+                
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 155 --------NI-W---GYAEQNHE----FNNLFNQ---GLASDSQMAKLIIKDCKHIFDGL 195
                    I W                  L  Q      S S  +  I      I   L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 196 SSLVEVGGGTGSF--------ARIISEAFPSIKCSVLELPHVI-ADLPETDNLKFIAGDM 246
             L++                A+    AF ++ C +L    +       TD L       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAW-NAF-NLSCKIL----LTTRFKQVTDFLSAATTTH 288

Query: 247 NQSIPSADAFLFKLIFHDYDDEVCLKLLKNC------REAVASSDGREKVIIVDIVVNEK 300
                 +          D    + LK L +C      RE + ++        + I+    
Sbjct: 289 ISLDHHSMTLT-----PDEVKSLLLKYL-DCRPQDLPREVLTTNP-----RRLSIIAESI 337

Query: 301 KDKPEITE--AKLLYDALMMTCVPGIERS-----EKEWERLFFDAG-F-TSYKITP-LLG 350
           +D     +    +  D L       IE S       E+ ++F     F  S  I   LL 
Sbjct: 338 RDGLATWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 351 L 351
           L
Sbjct: 394 L 394

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 25/179 (13%)

Query: 170 FNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV 229
            +     D + ++  I             ++ G G G   + +     +    +  + H+
Sbjct: 71  MDHVHDVDIEGSRNFIASLPGHGTS--RALDCGAGIGRITKNLLTKLYATTDLLEPVKHM 128

Query: 230 I----ADLPETDNLKFIAGDMNQSIP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVA 282
           +     +L      KFI   M  +     + D  + +       D   +K  K+C++A+ 
Sbjct: 129 LEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT 188

Query: 283 SSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT 341
            +     +   +      +               +      + RS+  ++RLF ++G  
Sbjct: 189 PNG---YIFFKENCSTGDRFL-------------VDKEDSSLTRSDIHYKRLFNESGVR 231

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 201 VGGGTGSFARIISEAFPSIKCSVLEL-PHVIA------DLPETDNLKFIAGDMNQSIPSA 253
           +GGG  + AR  ++ +P  + +V+EL   +        D+P    +K    D      S 
Sbjct: 96  LGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF 155

Query: 254 DAFLFKLIFHD-YDDE------VCLKLLKNCREAVA 282
                 +I  D +           ++  ++C   +A
Sbjct: 156 TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLA 191

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 35/171 (20%)

Query: 201 VGGGTGSFARIISEAFPSIKC-----SVLELPHVIADLPETDNLKFIAGDMNQSIPSADA 255
           V  G G  A   +     +        +L++     +      ++++ GD  + +P  D 
Sbjct: 44  VATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDE 102

Query: 256 FLFKLI--------FHDYDDEVCLKLLKNCREA--VASSDGREKVIIVDIVVNEKKDKPE 305
             F ++        F +    V         EA  V    G+  +++VD         PE
Sbjct: 103 R-FHIVTCRIAAHHFPNPASFV--------SEAYRVLKKGGQ--LLLVDNS------APE 145

Query: 306 ITEAKLLYDALMMTCVPGIER--SEKEWERLFFDAGFTSYKITPLLGLRSF 354
                + Y+ +         R   + +W ++  +AGF   ++        F
Sbjct: 146 NDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 196

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 178 SQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD---- 232
                + +       +    ++++G GTG  +  + E +P    +++++   ++      
Sbjct: 29  DDFYGVSVSIASVDTEN-PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR 87

Query: 233 LPETDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKV 290
                 +K+I  D ++       D  +  L  H  +DE   +L K     +    G    
Sbjct: 88  FRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSIL-KESGI--F 144

Query: 291 IIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF 335
           I  D+V        E    + L   +    V     +E+E    +
Sbjct: 145 INADLV------HGETAFIENLNKTIWRQYVENSGLTEEEIAAGY 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.82
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.77
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.75
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.75
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.74
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.74
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.73
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.73
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.72
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.72
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.72
3ocj_A	305	Putative exported protein; structural genomics, PS	99.71
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.71
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.7
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.7
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.7
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.7
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.7
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.7
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.69
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.69
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.68
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.68
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.68
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.68
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.68
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.67
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.67
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.67
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.66
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.66
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.65
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.65
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.64
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.63
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.63
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.63
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.62
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.62
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.61
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.61
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.6
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.59
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.58
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.57
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.57
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.55
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.55
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.54
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.54
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.53
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.51
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.51
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.5
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.49
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.49
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.49
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.48
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.47
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.47
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.46
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.46
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.44
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.43
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.42
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.42
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.4
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.4
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.4
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.4
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.39
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.39
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.38
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.37
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.37
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.37
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.37
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.34
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.34
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.34
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.34
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.33
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.33
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.32
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.32
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.32
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.32
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.31
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.31
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.31
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.31
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.3
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.3
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.29
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.29
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.29
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.29
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.28
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.27
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.27
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.27
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.26
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.26
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.25
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.24
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.24
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.22
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.22
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.22
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.21
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.2
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.2
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.19
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.19
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.17
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.17
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.17
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.16
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.16
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.16
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.15
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.14
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.14
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.14
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.13
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.13
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.12
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.12
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.11
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.11
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.1
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.1
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.1
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.08
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.08
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.08
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.08
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.07
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.07
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.07
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.07
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.06
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.06
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.06
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.06
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.05
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.05
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.05
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.04
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.04
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.03
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.02
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.02
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.0
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.0
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.99
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.99
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.99
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.99
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.99
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.98
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.97
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.97
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.96
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.96
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.96
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.95
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.94
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.94
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.93
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.92
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.92
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.91
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.91
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.91
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.91
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.91
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.9
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.9
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.89
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.89
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.89
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.89
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.88
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.88
2o07_A	304	Spermidine synthase; structural genomics, structur	98.88
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.87
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.86
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.85
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.85
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.82
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.81
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.81
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.79
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.77
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.77
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.72
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.71
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.69
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.69
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.66
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.64
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.61
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.6
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.58
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.53
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.46
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.46
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.46
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.44
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.44
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.43
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.43
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.42
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.4
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.4
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.38
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.38
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.34
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.34
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.34
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.31
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.29
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.28
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.25
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.24
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.23
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.23
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.21
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.2
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.19
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.17
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.16
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.13
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.0
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.93
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.92
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.91
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.89
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.89
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.88
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.77
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.76
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.75
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.63
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.61
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.52
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.49
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.49
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.45
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.43
3khk_A	544	Type I restriction-modification system methylation	97.37
3lkd_A	542	Type I restriction-modification system methyltrans	97.37
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.23
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.11
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.1
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.1
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.07
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	97.03
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	96.75
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.74
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.72
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.72
1y0u_A	96	Arsenical resistance operon repressor, putative; s	96.57
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.46
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.42
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.17
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.14
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	95.88
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	95.87
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	95.84
3jth_A	98	Transcription activator HLYU; transcription factor	95.83
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	95.74
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.73
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.72
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	95.68
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	95.66
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	95.66
3df8_A	111	Possible HXLR family transcriptional factor; APC89	95.6
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	95.58
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.55
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	95.53
1mkm_A	249	ICLR transcriptional regulator; structural genomic	95.49
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	95.46
2kko_A	108	Possible transcriptional regulatory protein (possi	95.46
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.45
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	95.44
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	95.39
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	95.3
2g7u_A	257	Transcriptional regulator; ICLR family, structural	95.3
3ufb_A	530	Type I restriction-modification system methyltran	95.27
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.25
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	95.25
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	95.21
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	95.2
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	95.18
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	95.14
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	94.96
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	94.89
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	94.85
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	94.81
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	94.78
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	94.65
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	94.6
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	94.58
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	94.57
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	94.53
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	94.52
1yyv_A	131	Putative transcriptional regulator; reductive meth	94.43
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	94.39
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	94.24
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	94.14
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	94.11
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	94.09
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	94.06
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	93.97
1ylf_A	149	RRF2 family protein; structural genomics, transcri	93.96
3k69_A	162	Putative transcription regulator; putative transcr	93.95
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	93.94
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.92
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	93.9
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	93.89
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	93.84
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	93.83
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	93.81
3f3x_A	144	Transcriptional regulator, MARR family, putative;	93.78
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	93.67
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	93.53
2obp_A	96	Putative DNA-binding protein; structural genomics,	93.4
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	93.39
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	93.36
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	93.31
1xd7_A	145	YWNA; structural genomics, protein structure initi	93.29
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	93.22
2h09_A	155	Transcriptional regulator MNTR; transcription regu	93.15
2pg4_A	95	Uncharacterized protein; structural genomics, join	93.12
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	93.12
3r0a_A	123	Putative transcriptional regulator; structural gen	93.11
3bja_A	139	Transcriptional regulator, MARR family, putative;	93.06
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	93.05
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	93.01
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	93.01
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	92.98
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	92.96
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	92.92
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	92.92
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	92.86
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	92.83
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	92.81
2nnn_A	140	Probable transcriptional regulator; structural gen	92.72
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	92.59
2gxg_A	146	146AA long hypothetical transcriptional regulator;	92.56
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	92.54
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	92.51
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	92.41
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	92.32
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	92.31
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	92.2
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	92.13
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	92.12
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	92.1
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	92.08
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	92.05
2pex_A	153	Transcriptional regulator OHRR; transcription regu	92.05
1bja_A	95	Transcription regulatory protein MOTA; activation	92.02
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	91.98
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	91.97
3s2w_A	159	Transcriptional regulator, MARR family; structural	91.72
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	91.72
1z91_A	147	Organic hydroperoxide resistance transcriptional;	91.62
2eth_A	154	Transcriptional regulator, putative, MAR family; M	91.61
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	91.59
1sfx_A	109	Conserved hypothetical protein AF2008; structural	91.35
2fxa_A	207	Protease production regulatory protein HPR; protea	90.94
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	90.88
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	90.82
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	90.69
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	90.6
4g6q_A	182	Putative uncharacterized protein; structural genom	90.51
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	90.23
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	90.21
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	89.82
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	89.53
2oo3_A	283	Protein involved in catabolism of external DNA; st	89.42
1p6r_A	82	Penicillinase repressor; transcription regulation,	89.22
3nqo_A	189	MARR-family transcriptional regulator; structural	89.02
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	89.02
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	88.97
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	88.91
2w25_A	150	Probable transcriptional regulatory protein; trans	88.9
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	88.59
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	88.45
1okr_A	123	MECI, methicillin resistance regulatory protein ME	88.4
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	88.37
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	88.36
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	88.32
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	88.22
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	88.05
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	87.98
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	87.68
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	87.58
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	87.57
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	87.21
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	87.08
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	87.0
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	86.84
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	86.74
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	86.74
3cta_A	230	Riboflavin kinase; structural genomics, transferas	86.68
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	86.49
1ku9_A	152	Hypothetical protein MJ223; putative transcription	86.31
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	86.14
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	86.05
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	85.87
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	85.8
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	85.55
4fx0_A	148	Probable transcriptional repressor protein; helix-	85.51
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	85.51
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	85.36
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.27
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	85.15
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.02
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	84.98
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	84.93
2vn2_A	128	DNAD, chromosome replication initiation protein; D	84.64
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	84.16
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	83.65
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	82.84
4esf_A	117	PADR-like transcriptional regulator; PADR family,	82.08
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	81.92
2o0m_A	345	Transcriptional regulator, SORC family; structural	81.89
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	81.73
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	81.63
3tqn_A	113	Transcriptional regulator, GNTR family; regulatory	81.16
1bia_A	321	BIRA bifunctional protein; transcription regulatio	80.54
2ek5_A	129	Predicted transcriptional regulators; helix-turn-h	80.19
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	80.15

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=3.2e-56  Score=420.40  Aligned_cols=327  Identities=18%  Similarity=0.306  Sum_probs=291.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      ++...|.+++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+   +++.++|||++|++.|+|.+..+     
T Consensus         7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~-----   78 (353)
T 4a6d_A            7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR-----   78 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc-----
Confidence            5667799999999999999999999999999875589999999999999   68999999999999999986532     


Q ss_pred             CCCceEecCccch-hhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccC---CChhHhhhhChHHHHH
Q 043623           94 EENEAYALTSASK-LLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHG---INIWGYAEQNHEFNNL  169 (359)
Q Consensus        94 ~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g---~~~~~~~~~~~~~~~~  169 (359)
                      ++++.|++|+.++ +|..++|.++.+++.+.. ...+..|..|.++++ +++ +++...+|   .++|+++.++++....
T Consensus        79 ~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr-~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~  155 (353)
T 4a6d_A           79 GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVR-EGR-NQYLETFGVPAEELFTAIYRSEGERLQ  155 (353)
T ss_dssp             TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHH-HTS-CCHHHHHSCCCSSHHHHHTSSHHHHHH
T ss_pred             CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHh-cCC-ChhHHhcCCChHHHHHHHhhCHHHHHH
Confidence            1245899999887 778888889999888764 346789999999999 677 55666666   4689999999999999


Q ss_pred             HHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC------CCCceEE
Q 043623          170 FNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE------TDNLKFI  242 (359)
Q Consensus       170 f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~------~~rv~~~  242 (359)
                      |+++|....... +.++..++  +++..+|||||||+|.++..+++++|+++++++|+|++++.+++      .+||+++
T Consensus       156 f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~  233 (353)
T 4a6d_A          156 FMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQ  233 (353)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeee
Confidence            999999887776 88899888  88889999999999999999999999999999999999877653      6899999


Q ss_pred             eCCCCC-CCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc
Q 043623          243 AGDMNQ-SIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV  321 (359)
Q Consensus       243 ~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (359)
                      .+|+++ +.|++|+|+++++||+|+|+++.++|++++++|+|   ||+++|+|.+.++....+   .....+|+.|+..+
T Consensus       234 ~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~  307 (353)
T 4a6d_A          234 EGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT  307 (353)
T ss_dssp             ESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS
T ss_pred             cCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC
Confidence            999998 67789999999999999999999999999999999   999999999988766544   34457899999889


Q ss_pred             CCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          322 PGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       322 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +|++||.+||+++|+++||+.++++++++..++|+|+|
T Consensus       308 ~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          308 EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred             CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence            99999999999999999999999999999999999997

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=8.9e-53  Score=398.47  Aligned_cols=344  Identities=28%  Similarity=0.465  Sum_probs=297.1

Q ss_pred             hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCC-CCCCHHHHHhhcCC--CCCCcchHHHHHHHHhccCceee
Q 043623            9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRG-RPVTLPELVSALEF--QPNKRNCLRRIMRLLDHSGFFST   85 (359)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~t~~~LA~~~~~--~~~~~~~l~~~L~~L~~~g~l~~   85 (359)
                      ..+..+++..+++++.|++.+++|++|++||||++|.++| +|+|++|||+++|+  +|.++..++||||+|++.|+|++
T Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~   93 (364)
T 3p9c_A           14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC   93 (364)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence            4567888999999999999999999999999999998754 69999999999997  64334499999999999999998


Q ss_pred             ccccCCCCC-CCceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhC
Q 043623           86 TKVHNSREE-ENEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQN  163 (359)
Q Consensus        86 ~~~~~~~~~-~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~  163 (359)
                      +.... +++ .++.|++|+.+++|..+ ++.++++++.+..++.++..|.+|.++++ +|+ ++|+..+|.++|+|+.++
T Consensus        94 ~~~~~-~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r-~g~-~~~~~~~g~~~~~~~~~~  170 (364)
T 3p9c_A           94 LVEEG-KDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVL-DGG-IPFNKAYGMSAFEYHGTD  170 (364)
T ss_dssp             EEEEC-SSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHH-HCS-CHHHHHHSSCHHHHHTTC
T ss_pred             ecccc-CCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHh-hCC-ChHHHhcCCCHHHHHHhC
Confidence            72000 000 02689999999988765 46689998887666667889999999999 677 789888999999999999


Q ss_pred             hHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEE
Q 043623          164 HEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFI  242 (359)
Q Consensus       164 ~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~  242 (359)
                      ++....|+++|....... +.++..++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++
T Consensus       171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~  249 (364)
T 3p9c_A          171 PRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHV  249 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEE
Confidence            999999999999877665 77887776 2567799999999999999999999999999999999999999988999999


Q ss_pred             eCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh-hc
Q 043623          243 AGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT-CV  321 (359)
Q Consensus       243 ~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~  321 (359)
                      .+|+++++|..|+|++.++||+|+++++.++|++++++|+|   ||+++|+|...++.............+++.|+. ..
T Consensus       250 ~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~  326 (364)
T 3p9c_A          250 GGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP  326 (364)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS
T ss_pred             eCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc
Confidence            99999977767999999999999999999999999999999   999999999988765443222233467888885 47


Q ss_pred             CCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          322 PGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       322 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +|+.|+.++|+++|+++||+.+++.++++..++||+||
T Consensus       327 ~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          327 GGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             SCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence            89999999999999999999999999999999999997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=1.8e-51  Score=390.11  Aligned_cols=342  Identities=32%  Similarity=0.532  Sum_probs=293.3

Q ss_pred             HhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccC---CCCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeec
Q 043623           11 ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKR---GRPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~---~~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..+++..+++++.|++.+++|++|++||||+.|.++   ++|.|++|||+++| .+|.++..++||||+|++.|+|++.
T Consensus        17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~   96 (368)
T 3reo_A           17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT   96 (368)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence            5677889999999999999999999999999999863   24799999999998 4543345999999999999999986


Q ss_pred             cccCCCCC-CCceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhCh
Q 043623           87 KVHNSREE-ENEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNH  164 (359)
Q Consensus        87 ~~~~~~~~-~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~  164 (359)
                      .... +++ .++.|++|+.++.|..+ ++.++++++.+..++.++..|.+|.++++ +|. ++|+..+|.++|+|+.+++
T Consensus        97 ~~~~-~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r-~g~-~~~~~~~g~~~~~~~~~~~  173 (368)
T 3reo_A           97 LREL-PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL-EGG-IPFNKAYGMNIFDYHGTDH  173 (368)
T ss_dssp             EEEC-TTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHH-HCS-CHHHHHSSSCHHHHHTTCH
T ss_pred             cccC-CCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHh-cCC-CHHHHHhCCCHHHHHhhCH
Confidence            2000 000 02689999999977754 46789999887766667889999999999 676 7898889999999999999


Q ss_pred             HHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEe
Q 043623          165 EFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA  243 (359)
Q Consensus       165 ~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~  243 (359)
                      +....|+++|....... ..+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.
T Consensus       174 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~  252 (368)
T 3reo_A          174 RINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG  252 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence            99999999999877665 77777775 25677899999999999999999999999999999999999998889999999


Q ss_pred             CCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-cC
Q 043623          244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-VP  322 (359)
Q Consensus       244 ~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  322 (359)
                      +|+++++|..|+|++.++||+|+++++.++|++++++|+|   ||+|+|+|...++.............+++.|+.. .+
T Consensus       253 ~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  329 (368)
T 3reo_A          253 GDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG  329 (368)
T ss_dssp             CCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSB
T ss_pred             cCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCC
Confidence            9999977767999999999999999999999999999999   9999999999887654432222335678888765 58


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      |+.|+.++|+++|+++||+.+++.+..+..++||+||
T Consensus       330 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             CCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence            9999999999999999999999999999999999986

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=4e-51  Score=385.89  Aligned_cols=349  Identities=45%  Similarity=0.832  Sum_probs=297.1

Q ss_pred             CcccccchhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccC
Q 043623            2 SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSG   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g   81 (359)
                      |||+.+++++..+++.++++++.|++.+++|++++++|||+.|...++|.|++|||+++|++|.+++.++|||++|++.|
T Consensus         3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g   82 (352)
T 1fp2_A            3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG   82 (352)
T ss_dssp             -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred             ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence            67888788899999999999999999999999999999999998643599999999999997656789999999999999


Q ss_pred             ceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhh
Q 043623           82 FFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAE  161 (359)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~  161 (359)
                      +|++...      +++.|++|+.+++|.+++|.++++++.+..++.++..|.+|+++++++|. +++...+|.++|+|+.
T Consensus        83 ll~~~~~------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~  155 (352)
T 1fp2_A           83 FFEIITK------EEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLD  155 (352)
T ss_dssp             SEEEEES------SSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHH
T ss_pred             eEEEecC------CCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHH
Confidence            9998720      04799999999999988888899999887655567889999999983344 7788888999999999


Q ss_pred             hChHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCce
Q 043623          162 QNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLK  240 (359)
Q Consensus       162 ~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~  240 (359)
                      ++++....|+++|....... +. ++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+
T Consensus       156 ~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~  234 (352)
T 1fp2_A          156 KNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLT  234 (352)
T ss_dssp             HCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEE
T ss_pred             hChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcE
Confidence            99999999999999877665 55 77773237778999999999999999999999999999999999999998767799


Q ss_pred             EEeCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623          241 FIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC  320 (359)
Q Consensus       241 ~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (359)
                      ++.+|+++++|+||+|++.++||+|+++++.++|++++++|+|+++||+++|.|...++....+........+++.|+. 
T Consensus       235 ~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-  313 (352)
T 1fp2_A          235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-  313 (352)
T ss_dssp             EEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-
T ss_pred             EEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-
Confidence            9999998877789999999999999999999999999999997222699999999987654331111233467777776 


Q ss_pred             cCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          321 VPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      .+++.++.++|.++|+++||+++++++.++..++||+++
T Consensus       314 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  352 (352)
T 1fp2_A          314 LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  352 (352)
T ss_dssp             GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence            568889999999999999999999999888889999985

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=1.2e-50  Score=381.93  Aligned_cols=326  Identities=26%  Similarity=0.421  Sum_probs=289.5

Q ss_pred             hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623            9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV   88 (359)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~   88 (359)
                      +-...++..++++++.|++.+++|++|+++|||+.|.+  +|.|++|||+++|+   +++.++|||++|++.|+|++ + 
T Consensus        16 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~-   88 (348)
T 3lst_A           16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S-   88 (348)
T ss_dssp             CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E-
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c-
Confidence            33556788899999999999999999999999999985  79999999999999   68999999999999999999 4 


Q ss_pred             cCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHH
Q 043623           89 HNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNN  168 (359)
Q Consensus        89 ~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~  168 (359)
                             ++.|++|+.++.|.++++.++.+++.+..++..+..|.+|+++++ +|. +++...+|.++|+|+.++++...
T Consensus        89 -------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~-~~~~~~~g~~~~~~~~~~~~~~~  159 (348)
T 3lst_A           89 -------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALG-PER-PAFADIFGSSLDAYFDGDAEVEA  159 (348)
T ss_dssp             -------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTC-TTC-CCHHHHHSSCHHHHHTTCHHHHH
T ss_pred             -------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHh-cCC-ChhhHHhCCCHHHHHHhCHHHHH
Confidence                   589999999998888877789998887655556789999999999 676 56888889899999999999999


Q ss_pred             HHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCceEE
Q 043623          169 LFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-----TDNLKFI  242 (359)
Q Consensus       169 ~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-----~~rv~~~  242 (359)
                      .|.++|....... +.+++.++  +++..+|||||||+|.++..+++++|+++++++|+++++...+.     .+||+++
T Consensus       160 ~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~  237 (348)
T 3lst_A          160 LYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVV  237 (348)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEE
T ss_pred             HHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEE
Confidence            9999999877666 78888887  78889999999999999999999999999999999887773321     5789999


Q ss_pred             eCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623          243 AGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP  322 (359)
Q Consensus       243 ~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (359)
                      .+|+++++|+||+|++.++||+|+++++.++|++++++|||   ||+++|.|...++.....    ....+++.|+...+
T Consensus       238 ~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~~~  310 (348)
T 3lst_A          238 EGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDAH----QSKEMDFMMLAART  310 (348)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSCC----HHHHHHHHHHHTTS
T ss_pred             ecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhhhcChhhhhcCC
Confidence            99998866799999999999999999999999999999999   999999999887764332    23467888887789


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      ++.++.++|.++|+++||+++++++..+..++||+++
T Consensus       311 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          311 GQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             CCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred             CcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence            9999999999999999999999999878899999874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=7.9e-50  Score=379.20  Aligned_cols=326  Identities=25%  Similarity=0.450  Sum_probs=290.4

Q ss_pred             hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623            9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV   88 (359)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~   88 (359)
                      +-...+...++++++.|++.+++|+++++||||+.|++  +|.|++|||+++|+   +++.++|||++|++.|+|.+++ 
T Consensus        32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~-  105 (369)
T 3gwz_A           32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG-  105 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS-
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC-
Confidence            33445667889999999999999999999999999985  79999999999999   6899999999999999999976 


Q ss_pred             cCCCCCCCce-EecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHH
Q 043623           89 HNSREEENEA-YALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFN  167 (359)
Q Consensus        89 ~~~~~~~~~~-~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~  167 (359)
                             ++. |++|+.++.|.++++.++.+++.+..++..+..|.+|.++++ +++ ++|...+|.++|+|+.++++..
T Consensus       106 -------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~-~~~~~~~g~~~~~~~~~~~~~~  176 (369)
T 3gwz_A          106 -------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVR-TGE-ASFDVANGTSFWQLTHEDPKAR  176 (369)
T ss_dssp             -------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHH-HSS-CSHHHHHSSCHHHHHHHCHHHH
T ss_pred             -------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHh-CCC-ChhHhhcCCCHHHHHHhCHHHH
Confidence                   578 999999998888887788998887765546788999999999 676 5677788889999999999999


Q ss_pred             HHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCc
Q 043623          168 NLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNL  239 (359)
Q Consensus       168 ~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv  239 (359)
                      ..|+++|....... +.+++.++  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+||
T Consensus       177 ~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v  254 (369)
T 3gwz_A          177 ELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRC  254 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCce
Confidence            99999999877666 78888887  77889999999999999999999999999999999888887763       5789


Q ss_pred             eEEeCCCCCCCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh
Q 043623          240 KFIAGDMNQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM  318 (359)
Q Consensus       240 ~~~~~d~~~~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~  318 (359)
                      +++.+|+++++| +||+|++.++||+|+++++.++|++++++|+|   ||+++|.|...++....    . ...+++.|+
T Consensus       255 ~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~  326 (369)
T 3gwz_A          255 EILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLL  326 (369)
T ss_dssp             EEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHH
T ss_pred             EEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHH
Confidence            999999998777 69999999999999999999999999999999   99999999998776432    1 456788888


Q ss_pred             hhcCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEEEEC
Q 043623          319 TCVPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIEVYL  359 (359)
Q Consensus       319 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~  359 (359)
                      ...+++.++.++|.++|+++||+++++++ .++..++||+++
T Consensus       327 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          327 VLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             HHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             hhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence            78899999999999999999999999999 578899999975

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=1.1e-49  Score=376.78  Aligned_cols=350  Identities=46%  Similarity=0.817  Sum_probs=294.7

Q ss_pred             hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623            9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV   88 (359)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~   88 (359)
                      ..+..+++.++++++.|++.+++|+++++||||+.|+..++|.|++|||+++|++|.+++.++|||++|++.|+|.+...
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~   83 (358)
T 1zg3_A            4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV   83 (358)
T ss_dssp             TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence            35677888899999999999999999999999999986435999999999999977668999999999999999998710


Q ss_pred             cCCC-CCC-CceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCC-CChhhhccCCChhHhhhhChH
Q 043623           89 HNSR-EEE-NEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNEL-PDPFVTGHGINIWGYAEQNHE  165 (359)
Q Consensus        89 ~~~~-~~~-~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~~g~~~~~~~~~~~~  165 (359)
                      .... ++. ++.|++|+.+++|++++|.++++++.+..++.++..|.+|+++++ ++. .++|+..+|.++|+|+.++|+
T Consensus        84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~~~g~~~~~~~~~~p~  162 (358)
T 1zg3_A           84 KGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFN-EDKEQTLFECATGESFWDFLNKDSE  162 (358)
T ss_dssp             CCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHH-CSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred             cccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCCChHHHHhCCCHHHHHhcChh
Confidence            0000 000 268999999999998888889999988766566789999999999 673 267888889999999999999


Q ss_pred             HHH--HHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEe
Q 043623          166 FNN--LFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA  243 (359)
Q Consensus       166 ~~~--~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~  243 (359)
                      ...  .|++.|.........+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+|+++.
T Consensus       163 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~  242 (358)
T 1zg3_A          163 SSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG  242 (358)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEE
T ss_pred             hhhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEe
Confidence            999  999999875543235677773226677899999999999999999999999999999999999988767799999


Q ss_pred             CCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623          244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG  323 (359)
Q Consensus       244 ~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (359)
                      +|+++++|.||+|+++++||+|+++++.++|++++++|+|+++||+++|.|...++....+........+++.|+...+|
T Consensus       243 ~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g  322 (358)
T 1zg3_A          243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG  322 (358)
T ss_dssp             CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCC
Confidence            99999877899999999999999999999999999999872126999999999877654321122345678877777789


Q ss_pred             cccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          324 IERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       324 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +.|+.++|.++|+++||+++++++.++..++||+++
T Consensus       323 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  358 (358)
T 1zg3_A          323 KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP  358 (358)
T ss_dssp             CCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence            999999999999999999999999988889999985

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=9e-49  Score=372.45  Aligned_cols=340  Identities=28%  Similarity=0.482  Sum_probs=277.7

Q ss_pred             hhHhHHHHHHHH--HHHHhHHHHHHHHHHHHcCcccccccCCCC---CCHHHHHhhcCC---CCCCcchHHHHHHHHhcc
Q 043623            9 ANELFQAQAHLY--KHVLSYMSSIFLKCAVELGIPDIIHKRGRP---VTLPELVSALEF---QPNKRNCLRRIMRLLDHS   80 (359)
Q Consensus         9 ~~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~~~---~t~~~LA~~~~~---~~~~~~~l~~~L~~L~~~   80 (359)
                      .++..+++.+++  +++.|++.+++|++|++||||+.|++.|+|   .|++|||+++|+   +|.+++.++|||++|++.
T Consensus        16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~   95 (372)
T 1fp1_D           16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY   95 (372)
T ss_dssp             ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence            446677888888  999999999999999999999999863226   999999999999   665688999999999999


Q ss_pred             Cceeec----cccCCCCCC--CceEecCccchhhhcCCC-CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccC
Q 043623           81 GFFSTT----KVHNSREEE--NEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHG  153 (359)
Q Consensus        81 g~l~~~----~~~~~~~~~--~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g  153 (359)
                      |+|.+.    +.      +  ++.|++|+.+++|++++| .++++++.+..++.++..|.+|+++++ ++..++|+..+|
T Consensus        96 gll~~~~~~~~~------g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~~g  168 (372)
T 1fp1_D           96 SVLTSTTRTIED------GGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVV-DEDIDLFKNVHG  168 (372)
T ss_dssp             TSEEEEEEECTT------SCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHH-SCC---------
T ss_pred             CceEecccccCC------CCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHH-cCCCChhHHHhC
Confidence            999987    20      1  258999999999998876 689999988766556788999999999 672367888888


Q ss_pred             CChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhc
Q 043623          154 INIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIAD  232 (359)
Q Consensus       154 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~  232 (359)
                      .++|+|+.++++....|++.|....... +.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus       169 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~  247 (372)
T 1fp1_D          169 VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN  247 (372)
T ss_dssp             -----CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred             CCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHh
Confidence            8999999999999999999998776655 77777774 256778999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH
Q 043623          233 LPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL  312 (359)
Q Consensus       233 a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~  312 (359)
                      +++.++|+++.+|+++++|.||+|++.++||+|+++++.++|++++++|+|   ||+++|.|...++....+........
T Consensus       248 a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~  324 (372)
T 1fp1_D          248 APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVST  324 (372)
T ss_dssp             CCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHH
T ss_pred             hhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHH
Confidence            987788999999999877779999999999999999999999999999999   99999999998776543211113346


Q ss_pred             hhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec-CCcceEEEEEC
Q 043623          313 YDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL-LGLRSFIEVYL  359 (359)
Q Consensus       313 ~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~  359 (359)
                      +++.|+...+++.++.++|.++|+++||+++++++. ++..++||+++
T Consensus       325 ~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          325 LDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             HHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             hhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            777777666789999999999999999999999984 45259999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=3.3e-49  Score=369.87  Aligned_cols=316  Identities=20%  Similarity=0.308  Sum_probs=276.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623           16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE   95 (359)
Q Consensus        16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~   95 (359)
                      ...+++++.|++.+++|++|+++|||+.|.+  +|.|++|||+++|+   +++.++|||++|++.|++.+++        
T Consensus         6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~--------   72 (332)
T 3i53_A            6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG--------   72 (332)
T ss_dssp             CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC--------
Confidence            3457899999999999999999999999985  79999999999999   6899999999999999999986        


Q ss_pred             CceEecCccchhhhcCCCCChhHHHHHhcCcccc-chhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623           96 NEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFI-TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL  174 (359)
Q Consensus        96 ~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~  174 (359)
                      ++.|.+|+.++.|..+++.++.+++.+..+...+ ..|.+|+++++ +++ ++|...+|.++|+|+.++++....|.++|
T Consensus        73 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m  150 (332)
T 3i53_A           73 QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIR-TGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLM  150 (332)
T ss_dssp             TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHH-HSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred             CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHh-cCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence            5899999999988877777888888665332234 78999999999 676 56877888889999999999999999999


Q ss_pred             hcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCC
Q 043623          175 ASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDM  246 (359)
Q Consensus       175 ~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~  246 (359)
                      ....... +.+++.++  +++..+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .+||+++.+|+
T Consensus       151 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  228 (332)
T 3i53_A          151 SHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF  228 (332)
T ss_dssp             HHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC
Confidence            8766544 56666666  66678999999999999999999999999999999888887763       47899999999


Q ss_pred             CCCCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcc
Q 043623          247 NQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIE  325 (359)
Q Consensus       247 ~~~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  325 (359)
                      ++++| +||+|++.++||+|+++++.++|++++++|+|   ||+++|.|...++. ..      ...+++.|+...+++.
T Consensus       229 ~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~  298 (332)
T 3i53_A          229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKE  298 (332)
T ss_dssp             TSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCC
Confidence            98777 69999999999999999999999999999999   99999999988776 22      1357777877789999


Q ss_pred             cCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          326 RSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       326 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      ++.++|.++|+++||+++++++.++ .++||+++
T Consensus       299 ~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~  331 (332)
T 3i53_A          299 RSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA  331 (332)
T ss_dssp             CCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence            9999999999999999999999988 99999874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.8e-48  Score=362.19  Aligned_cols=318  Identities=25%  Similarity=0.367  Sum_probs=281.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      .+..++++++.|++.+++|++++++|||+.|.+  +|.|++|||+++|+   +++.++|||++|++.|+|.+.+      
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------   75 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------   75 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence            567889999999999999999999999999975  79999999999999   6899999999999999999886      


Q ss_pred             CCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHH
Q 043623           94 EENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQG  173 (359)
Q Consensus        94 ~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~  173 (359)
                        ++.|++|+.++.|. ++|.++++++.+..+... ..|.+|+++++ +++ ++++..+|.++|+|+.++++....|++.
T Consensus        76 --~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~  149 (334)
T 2ip2_A           76 --RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALL-SGT-PGFELAFGEDFYSYLKRCPDAGRRFLLA  149 (334)
T ss_dssp             --TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHH-HCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred             --CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHh-cCC-ChhhhhcCCCHHHHHhhChHHHHHHHHH
Confidence              58999999999888 777789999988765434 88999999999 676 6788778889999999999999999999


Q ss_pred             hhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCC
Q 043623          174 LASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGD  245 (359)
Q Consensus       174 ~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d  245 (359)
                      | ...... +.+++.++  +++ .+|||||||+|.++..+++++|+.+++++|++.+++.+++       .+||+++.+|
T Consensus       150 m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d  225 (334)
T 2ip2_A          150 M-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD  225 (334)
T ss_dssp             H-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred             H-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence            9 766655 77888877  666 9999999999999999999999999999999877777654       4789999999


Q ss_pred             CCCCCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623          246 MNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI  324 (359)
Q Consensus       246 ~~~~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (359)
                      +++++|. ||+|++.+++|+|+++++.++|++++++|+|   ||+++|.|...++....    .....+++.|+...+++
T Consensus       226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~  298 (334)
T 2ip2_A          226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGR  298 (334)
T ss_dssp             TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCc
Confidence            9987664 9999999999999999999999999999999   99999999988765432    23456777777767899


Q ss_pred             ccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          325 ERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       325 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      .++.++|.++|+++||+++++++.++..++|+++|
T Consensus       299 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          299 HRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             CCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence            99999999999999999999999988899999975

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=8.6e-47  Score=357.53  Aligned_cols=335  Identities=15%  Similarity=0.142  Sum_probs=268.5

Q ss_pred             CCcccccchhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhcc
Q 043623            1 MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHS   80 (359)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~   80 (359)
                      |++--..++.+..+++.++++++.|++.+++|+++++||||+.|+++++|.|++|||+++|+   +++.++|||++|++.
T Consensus         1 ~~~~~~~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~   77 (363)
T 3dp7_A            1 MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTI   77 (363)
T ss_dssp             ----CCCSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred             CCcccccCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhC
Confidence            55544445667888999999999999999999999999999999864579999999999999   689999999999999


Q ss_pred             CceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccC--CChhH
Q 043623           81 GFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHG--INIWG  158 (359)
Q Consensus        81 g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g--~~~~~  158 (359)
                      |+|+++         ++.|++|+.+++|+.+++.  ..++.+. ....+..|.+|+++++ +|+ +++...+|  .++|+
T Consensus        78 g~l~~~---------~~~y~~t~~s~~L~~~~~~--~~~~~~~-~~~~~~~~~~L~~~lr-~g~-~~~~~~~g~~~~~~~  143 (363)
T 3dp7_A           78 GTILLE---------EDRYVLAKAGWFLLNDKMA--RVNMEFN-HDVNYQGLFHLEEALL-NGR-PEGLKVFGEWPTIYE  143 (363)
T ss_dssp             TSEEEE---------TTEEEECHHHHHHHHCHHH--HHHHHHH-HHTTHHHHTTHHHHHH-HSS-CGGGGGTCCCSSHHH
T ss_pred             CCeEec---------CCEEecccchHHhhCCCcc--cchheee-cHHhhhhHHHHHHHHh-cCC-CccccccCchHhHHH
Confidence            999886         4899999999999887642  2233333 3356789999999999 677 45666677  68999


Q ss_pred             hhhhChHHHH----HHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC
Q 043623          159 YAEQNHEFNN----LFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP  234 (359)
Q Consensus       159 ~~~~~~~~~~----~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~  234 (359)
                      ++.++++...    .|+..|.....  ..++..+.  ..+..+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus       144 ~~~~~~~~~~~~~~~f~~~~~~~~~--~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~  219 (363)
T 3dp7_A          144 GLSQLPEQVQKSWFGFDHFYSDQSF--GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMR  219 (363)
T ss_dssp             HGGGSCHHHHHHHHHHHHHTTCCCC--HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHHhhhhhH--HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHH
Confidence            9999988766    36666654321  34555544  3567899999999999999999999999999999988887765


Q ss_pred             C-------CCCceEEeCCCCCC---CC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC
Q 043623          235 E-------TDNLKFIAGDMNQS---IP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK  303 (359)
Q Consensus       235 ~-------~~rv~~~~~d~~~~---~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~  303 (359)
                      +       .+||+++.+|++++   +| +||+|++.++||+|+++++.++|++++++|+|   ||+|+|+|...++....
T Consensus       220 ~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~  296 (363)
T 3dp7_A          220 KQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYE  296 (363)
T ss_dssp             HHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSH
T ss_pred             HHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCcccc
Confidence            3       36899999999983   66 59999999999999999999999999999999   99999999988775432


Q ss_pred             chH-HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          304 PEI-TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       304 ~~~-~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                      ... .......++.++...+++.|+.++|.++|+++||+++++++.. ...++|++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          297 TASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred             chhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence            110 0111122333444457889999999999999999999999875 4588998864

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=7.9e-46  Score=352.36  Aligned_cols=324  Identities=20%  Similarity=0.282  Sum_probs=277.1

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCC
Q 043623           12 LFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNS   91 (359)
Q Consensus        12 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~   91 (359)
                      ..+...++++++.|++.+++|++++++|||+.|..  +|.|++|||+++|+   +++.++|||++|++.|+|.+.+    
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~----   83 (374)
T 1qzz_A           13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE----   83 (374)
T ss_dssp             CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence            34556789999999999999999999999999964  79999999999999   6899999999999999999865    


Q ss_pred             CCCCCc--eEecCccchhhhcCCCCChhHHHHHhcCcccc-chhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHH
Q 043623           92 REEENE--AYALTSASKLLLKDKPYCLSPFVLLVTDAAFI-TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNN  168 (359)
Q Consensus        92 ~~~~~~--~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~  168 (359)
                          ++  .|++|+.+++|..+++.+++.++.+..++..+ ..|..|.+.++ ++. +++...+|.++|+++..+++...
T Consensus        84 ----~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~-~~~~~~~g~~~~~~~~~~~~~~~  157 (374)
T 1qzz_A           84 ----KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVR-TGR-PAYAGRYGRPFWEDLSADVALAD  157 (374)
T ss_dssp             ----C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHH-HSC-CSHHHHHSSCHHHHHHHCHHHHH
T ss_pred             ----CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHh-cCC-ChhhhhhCCCHHHHHhhChHHHH
Confidence                46  89999999999988887888888766433345 78899999999 676 56777788899999999999999


Q ss_pred             HHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCce
Q 043623          169 LFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLK  240 (359)
Q Consensus       169 ~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~  240 (359)
                      .|.+.|....... +.+++.++  +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++       .++|+
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~  235 (374)
T 1qzz_A          158 SFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT  235 (374)
T ss_dssp             HHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred             HHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceE
Confidence            9999998776655 78888887  77789999999999999999999999999999999888877653       35899


Q ss_pred             EEeCCCCCCCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee--ecCCCCCCchHHHHHHHhhhhh
Q 043623          241 FIAGDMNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI--VVNEKKDKPEITEAKLLYDALM  317 (359)
Q Consensus       241 ~~~~d~~~~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~  317 (359)
                      ++.+|+++++|. ||+|++.+++|+|+++++.++|++++++|+|   ||+++|.|.  ..++....    .....+++.+
T Consensus       236 ~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~  308 (374)
T 1qzz_A          236 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRM  308 (374)
T ss_dssp             EEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHH
T ss_pred             EEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHH
Confidence            999999886664 9999999999999999888999999999999   999999998  76544221    2334677777


Q ss_pred             hhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcc-----eEEEEEC
Q 043623          318 MTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLR-----SFIEVYL  359 (359)
Q Consensus       318 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~~i~~~~  359 (359)
                      +...+++.++.++|.++|+++||+++++...++..     ++|+++|
T Consensus       309 ~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          309 LTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             HHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             HHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence            76778999999999999999999999999988777     8999874

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.2e-44  Score=342.65  Aligned_cols=320  Identities=20%  Similarity=0.322  Sum_probs=277.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623           16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE   95 (359)
Q Consensus        16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~   95 (359)
                      ..++++++.|++.+++|.+++++|||+.|..  +|.|++|||+++|+   ++..++|+|++|++.|+|.+.+        
T Consensus        20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~--------   86 (360)
T 1tw3_A           20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA--------   86 (360)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE--------
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC--------
Confidence            4678999999999999999999999999964  79999999999999   6899999999999999999865        


Q ss_pred             CceEecCccchhhhcCCCCChhHHHHHhcCcc-ccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623           96 NEAYALTSASKLLLKDKPYCLSPFVLLVTDAA-FITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL  174 (359)
Q Consensus        96 ~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~  174 (359)
                      ++.|++|+.+++|..++|.+++.++.+...+. .+..|..|.+.++ +|. +++...+|.++|+++..+++....|.+.|
T Consensus        87 ~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~  164 (360)
T 1tw3_A           87 PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIR-TGR-PTYESIYGKPFYEDLAGRPDLRASFDSLL  164 (360)
T ss_dssp             TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHH-HCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHH
T ss_pred             CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHH-cCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHH
Confidence            58999999999999888888888876654332 4678899999999 676 45777778899999999999999999999


Q ss_pred             hcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCC
Q 043623          175 ASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDM  246 (359)
Q Consensus       175 ~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~  246 (359)
                      ....... +.+++.++  +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++       .++|+++.+|+
T Consensus       165 ~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  242 (360)
T 1tw3_A          165 ACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF  242 (360)
T ss_dssp             TTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            8877666 88888887  77789999999999999999999999999999999777776653       35899999999


Q ss_pred             CCCCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee-cCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623          247 NQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV-VNEKKDKPEITEAKLLYDALMMTCVPGI  324 (359)
Q Consensus       247 ~~~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (359)
                      ++++|. ||+|++.+++|+|+++++.++|++++++|+|   ||+++|.|.. .++....    .....+++.++...+++
T Consensus       243 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~  315 (360)
T 1tw3_A          243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGA  315 (360)
T ss_dssp             TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCc
Confidence            986664 9999999999999999889999999999999   9999999988 6544322    12345677777667899


Q ss_pred             ccCHHHHHHHHHhcCCceeeEEecCCc-----ceEEEEEC
Q 043623          325 ERSEKEWERLFFDAGFTSYKITPLLGL-----RSFIEVYL  359 (359)
Q Consensus       325 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~~i~~~~  359 (359)
                      .++.++|.++|+++||+++++.+.++.     .++|+++|
T Consensus       316 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          316 LRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  355 (360)
T ss_dssp             CCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence            999999999999999999999988665     78999875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=8.2e-44  Score=335.81  Aligned_cols=314  Identities=16%  Similarity=0.211  Sum_probs=262.8

Q ss_pred             HhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccC
Q 043623           11 ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHN   90 (359)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~   90 (359)
                      ++..+.. +++++.|++.+++|++++++|||++|.   +|.|++|||+++|+   +++.++|||++|++.|+|++++   
T Consensus        21 ~l~~p~~-l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~~---   90 (352)
T 3mcz_A           21 ALTSVVD-LVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKEG---   90 (352)
T ss_dssp             CCCSHHH-HHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---
T ss_pred             CCCCHHH-HHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEecC---
Confidence            4444444 999999999999999999999999996   49999999999999   6899999999999999999985   


Q ss_pred             CCCCCCceEecCccch-hhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHH
Q 043623           91 SREEENEAYALTSASK-LLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL  169 (359)
Q Consensus        91 ~~~~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (359)
                            +.|++|+.++ ++.+++|.+++.++.+..  ..+..|.+|+++++ +|.+.+|...      .++..+++....
T Consensus        91 ------~~y~~t~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~-~g~~~~f~~~------~~~~~~~~~~~~  155 (352)
T 3mcz_A           91 ------DAFRNTALTERYLTTTSADYIGPIVEHQY--LQWDNWPRLGEILR-SEKPLAFQQE------SRFAHDTRARDA  155 (352)
T ss_dssp             ------TEEEECHHHHHHHSTTCTTCCHHHHHHHH--TTTTTGGGHHHHHT-CSSCCTTSHH------HHTTTCHHHHHH
T ss_pred             ------CeeecCHHHHhhccCCChhhHHHHHHHhH--HHHHHHHHHHHHHh-CCCCCCcccc------cccccCHHHHHH
Confidence                  7899999987 777788888888887652  36789999999999 7876544321      234578888899


Q ss_pred             HHHHhhcCccchHHHHHhcccccCC-CCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceE
Q 043623          170 FNQGLASDSQMAKLIIKDCKHIFDG-LSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKF  241 (359)
Q Consensus       170 f~~~~~~~~~~~~~l~~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~  241 (359)
                      |.++|.........+++.++  +.+ ..+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .+||++
T Consensus       156 f~~~m~~~~~~~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~  233 (352)
T 3mcz_A          156 FNDAMVRLSQPMVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEF  233 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEE
T ss_pred             HHHHHHhhhhhHHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEE
Confidence            99999872221137888887  666 89999999999999999999999999999999888776653       468999


Q ss_pred             EeCCCCC-C--CCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh
Q 043623          242 IAGDMNQ-S--IPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM  317 (359)
Q Consensus       242 ~~~d~~~-~--~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~  317 (359)
                      +.+|+++ +  .+. ||+|++.++||+|+++++.++|++++++|+|   ||+++|.|...++....+   .....+++.|
T Consensus       234 ~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~  307 (352)
T 3mcz_A          234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHM  307 (352)
T ss_dssp             EECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHH
T ss_pred             EeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHH
Confidence            9999998 4  554 9999999999999999999999999999999   999999999988765443   2345678888


Q ss_pred             hhhc-CCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          318 MTCV-PGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       318 ~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +... +++.++.++|.++|+++||++++..  .+..++++++|
T Consensus       308 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          308 MVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             HHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred             HhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence            7654 7899999999999999999998853  35578888876

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-43  Score=332.17  Aligned_cols=312  Identities=20%  Similarity=0.265  Sum_probs=269.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCC
Q 043623           17 AHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEEN   96 (359)
Q Consensus        17 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~   96 (359)
                      .++++++.|++.+++|++++++|||+.|++  +|.|++|||+++|+   +++.++|||++|++.|+|+++         +
T Consensus         8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~---------~   73 (335)
T 2r3s_A            8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ---------A   73 (335)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec---------C
Confidence            468899999999999999999999999986  79999999999999   689999999999999999875         4


Q ss_pred             ceEecCccc-hhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhh
Q 043623           97 EAYALTSAS-KLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLA  175 (359)
Q Consensus        97 ~~~~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~  175 (359)
                      +.|++|+.+ .+|.++++.+++.++.+..++..+..|.+|+++++ ++.+ +++     . |+++.++++....|.+.|.
T Consensus        74 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~  145 (335)
T 2r3s_A           74 EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVL-KGGT-AIS-----S-EGTLSPEHPVWVQFAKAMS  145 (335)
T ss_dssp             TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHH-HTSC-CST-----T-TGGGSTTCTHHHHHHHHSG
T ss_pred             CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHh-cCCC-CCC-----C-cccccCCHHHHHHHHHHHH
Confidence            899999999 68888888789999888755456789999999999 6663 332     2 7777888888899999988


Q ss_pred             cCccch-HHHHHhccccc--CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCC
Q 043623          176 SDSQMA-KLIIKDCKHIF--DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGD  245 (359)
Q Consensus       176 ~~~~~~-~~l~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d  245 (359)
                      ...... ..+++.++  +  .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++       .++|+++.+|
T Consensus       146 ~~~~~~~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d  223 (335)
T 2r3s_A          146 PMMANPAQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS  223 (335)
T ss_dssp             GGGHHHHHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             HHHhhhHHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecc
Confidence            766655 67787777  5  7789999999999999999999999999999999877777654       3579999999


Q ss_pred             CCC-CCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc-C
Q 043623          246 MNQ-SIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV-P  322 (359)
Q Consensus       246 ~~~-~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  322 (359)
                      +++ ++++ ||+|++.+++|+++++++.++|++++++|+|   ||+++|+|...++....+   .....+++.|+... +
T Consensus       224 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~  297 (335)
T 2r3s_A          224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPN  297 (335)
T ss_dssp             TTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCC
Confidence            998 6664 9999999999999999999999999999999   999999999887654332   23456777777665 7


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY  358 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~  358 (359)
                      ++.++.++|.++|+++||+.+++.+.++..++|+++
T Consensus       298 ~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          298 GDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred             CCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence            899999999999999999999999998877877775

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=1.8e-43  Score=334.34  Aligned_cols=312  Identities=19%  Similarity=0.298  Sum_probs=266.0

Q ss_pred             hhHhHHHHHHHHHHHH-hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623            9 ANELFQAQAHLYKHVL-SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus         9 ~~~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..+..+++.++++++. |++.+++|++++++|||+.|.+  +|.|++|||+++|+   +++.++|||++|++.|+|.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~   98 (359)
T 1x19_A           24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED   98 (359)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEeeC
Confidence            3466778888999986 8999999999999999999985  79999999999999   6899999999999999999985


Q ss_pred             ccCCCCCCCceEecCcc-chhhhcCCC---CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhC
Q 043623           88 VHNSREEENEAYALTSA-SKLLLKDKP---YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQN  163 (359)
Q Consensus        88 ~~~~~~~~~~~~~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~  163 (359)
                               +.|++|+. +.+|.+++|   .++++++.+. ....+..|.+|+++++ ++.+           |+|+.++
T Consensus        99 ---------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~-~g~~-----------~~~~~~~  156 (359)
T 1x19_A           99 ---------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVR-GQKN-----------FKGQVPY  156 (359)
T ss_dssp             ---------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHT-TSCC-----------CCCSSCS
T ss_pred             ---------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHh-cCCC-----------CcccccC
Confidence                     69999995 568888877   7888888776 3346788999999999 6663           5556677


Q ss_pred             hH---HHHHHHHHhhcCcc-ch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---
Q 043623          164 HE---FNNLFNQGLASDSQ-MA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---  235 (359)
Q Consensus       164 ~~---~~~~f~~~~~~~~~-~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---  235 (359)
                      ++   ....|.+.|..... .. +.+++.++  +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++   
T Consensus       157 p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~  234 (359)
T 1x19_A          157 PPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAA  234 (359)
T ss_dssp             SCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHH
Confidence            77   88899999998877 55 78888887  77889999999999999999999999999999999888877653   


Q ss_pred             ----CCCceEEeCCCCC-CCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHH
Q 043623          236 ----TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK  310 (359)
Q Consensus       236 ----~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~  310 (359)
                          .+||+++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+|   ||+++|+|...++.. .+   ...
T Consensus       235 ~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~-~~---~~~  307 (359)
T 1x19_A          235 EKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPE-NP---NFD  307 (359)
T ss_dssp             HTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTT-SC---CHH
T ss_pred             hcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCC-Cc---hHH
Confidence                4679999999998 67778999999999999999899999999999999   999999999887652 22   122


Q ss_pred             HHhhhhhhhh-cCCcc----cCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          311 LLYDALMMTC-VPGIE----RSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       311 ~~~~~~~~~~-~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      ..+  .++.. .+++.    ++.++|.++|+++||+++++.+.+ ..++|+++|
T Consensus       308 ~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          308 YLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             HHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence            223  33332 34666    899999999999999999999988 788999986

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=3.8e-21  Score=173.12  Aligned_cols=164  Identities=12%  Similarity=0.105  Sum_probs=124.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~  260 (359)
                      ++++.+|||||||+|.++..++++.  |+++++++|+ +.+++.|++       ..+|+++.+|+.+ ++++||+|++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            4678999999999999999999975  6789999999 888887753       5689999999998 788899999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh---h-----------cCCccc
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT---C-----------VPGIER  326 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~g~~~  326 (359)
                      +||++++++..++|++++++|+|   ||++++.|............ ......++....   .           .--...
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~  223 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD  223 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred             eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence            99999998888999999999999   99999999887654321100 000111110000   0           001346


Q ss_pred             CHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          327 SEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +.+++.++|+++||+.++++....+...+.|+|
T Consensus       224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K  256 (261)
T 4gek_A          224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK  256 (261)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence            899999999999999999875433344455654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.82  E-value=2.5e-19  Score=158.40  Aligned_cols=163  Identities=15%  Similarity=0.188  Sum_probs=125.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD  264 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~  264 (359)
                      ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++    ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH  121 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence            34668999999999999999999999999999999 777776553    4489999999998 554 5999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh--------------hhhcCCcccCHHH
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM--------------MTCVPGIERSEKE  330 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~g~~~t~~e  330 (359)
                      +++++..++|++++++|+|   ||++++.+...++.......  ....+...+              ........++.++
T Consensus       122 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (234)
T 3dtn_A          122 LEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL--NKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ  196 (234)
T ss_dssp             SCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH--HHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred             CCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH--HHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence            9998877899999999999   99999999887654221100  000000000              0001234568999


Q ss_pred             HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          331 WERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      |.++|+++||+.++++......+++..+|
T Consensus       197 ~~~ll~~aGF~~v~~~~~~~~~~~~~~~~  225 (234)
T 3dtn_A          197 QLNWLKEAGFRDVSCIYKYYQFAVMFGRK  225 (234)
T ss_dssp             HHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence            99999999999999988877777666553

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.77  E-value=5.3e-18  Score=148.18  Aligned_cols=155  Identities=18%  Similarity=0.294  Sum_probs=125.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-  251 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++      ..+++++.+|+.+ +++ 
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            45566665  6778899999999999999999986 8889999999 778877654      3589999999988 554 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                       .||+|++..++|++++.  ..+|+++++.|+|   ||.+++.+...........                ....++.++
T Consensus       105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~  163 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGPP----------------PEEVYSEWE  163 (219)
T ss_dssp             SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSCC----------------GGGSCCHHH
T ss_pred             CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCCc----------------hhcccCHHH
Confidence             39999999999999875  5789999999999   9999999877655432210                112348999


Q ss_pred             HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          331 WERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      |.++++++||+++++...+.....+.++|
T Consensus       164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence            99999999999999998877777776664

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.76  E-value=4.4e-18  Score=148.77  Aligned_cols=168  Identities=15%  Similarity=0.169  Sum_probs=122.2

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCC-CccEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIP-SADAF  256 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~-~~D~i  256 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++  ..+++++.+|+.+ +.+ .||+|
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v  110 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI  110 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence            34555554  456789999999999999999997  569999999 778877654  2589999999998 554 59999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh----hhhhcCCcccCHHHHH
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL----MMTCVPGIERSEKEWE  332 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~t~~e~~  332 (359)
                      ++.+++|++++++...+|++++++|+|   ||.+++.++.........  ..........    .........++.++|.
T Consensus       111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (220)
T 3hnr_A          111 VSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYD--KTVEAAKQRGFHQLANDLQTEYYTRIPVMQ  185 (220)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHH--HHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred             EECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHH--HHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence            999999999998877799999999999   999999987654421110  0000000000    0000112345899999


Q ss_pred             HHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          333 RLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      ++|+++||+++.+. ...+.+++.+.+
T Consensus       186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~  211 (220)
T 3hnr_A          186 TIFENNGFHVTFTR-LNHFVWVMEATK  211 (220)
T ss_dssp             HHHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred             HHHHHCCCEEEEee-ccceEEEEeehh
Confidence            99999999876554 446677777653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.75  E-value=6.6e-18  Score=151.95  Aligned_cols=163  Identities=17%  Similarity=0.124  Sum_probs=118.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEecc-hhccCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLFKL-IFHDYD  266 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~~~-vlh~~~  266 (359)
                      .+++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~  125 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA  125 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence            3567899999999999999999985  48999999 888887765 5689999999998 554 499999998 999986


Q ss_pred             h-hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-----H---------------HHHHhhhhhhhh-cC--
Q 043623          267 D-EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-----E---------------AKLLYDALMMTC-VP--  322 (359)
Q Consensus       267 d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~---------------~~~~~~~~~~~~-~~--  322 (359)
                      + ++..++|++++++|+|   ||+++|.+...++........     .               ....+.+.+... .+  
T Consensus       126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (263)
T 3pfg_A          126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG  202 (263)
T ss_dssp             HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred             CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence            4 5567899999999999   898888655443322110000     0               000001111100 01  


Q ss_pred             ---------CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          323 ---------GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       323 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                               .+.++.++|.++|+++||+++++........+++++|
T Consensus       203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence                     2346899999999999999999987777677777764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.75  E-value=1.6e-18  Score=150.97  Aligned_cols=163  Identities=14%  Similarity=0.168  Sum_probs=118.3

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--  251 (359)
                      .++..++  .++. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++       .++++++.+|+.+ +++  
T Consensus        35 ~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  110 (219)
T 3dlc_A           35 NIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN  110 (219)
T ss_dssp             HHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred             HHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence            4444444  3444 9999999999999999998 8889999999 778776654       4689999999998 655  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh---hh-hhhcCCcccC
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA---LM-MTCVPGIERS  327 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~g~~~t  327 (359)
                      .||+|++..++|++++.  .++|+++++.|+|   ||.+++.+...+......   ........   +. ........++
T Consensus       111 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  182 (219)
T 3dlc_A          111 YADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS---ISAEMIRKNPDWKEFNRKNISQEN  182 (219)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH---HHHHHHHHCTTHHHHHHHHSSHHH
T ss_pred             cccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH---HHHHHHHhHHHHHhhhhhccccCC
Confidence            49999999999999764  4789999999999   999999875543211000   00000000   00 0001234458


Q ss_pred             HHHHHHHHHhcCCceeeEEecCCcceEEEE
Q 043623          328 EKEWERLFFDAGFTSYKITPLLGLRSFIEV  357 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~  357 (359)
                      .++|.++|+++||+++++.......+++..
T Consensus       183 ~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~  212 (219)
T 3dlc_A          183 VERFQNVLDEIGISSYEIILGDEGFWIIIS  212 (219)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred             HHHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence            899999999999999999888766665544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.75  E-value=1.2e-17  Score=150.13  Aligned_cols=155  Identities=17%  Similarity=0.263  Sum_probs=121.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~  253 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++    .++++++.+|+.+ +++  .|
T Consensus        45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            34455444  5677899999999999999999987 679999999 777776653    3789999999998 664  49


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..++||+++++...+|++++++|+|   ||++++.++..+......   .   .+.. .....+...++.++|.+
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~  191 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D---EFKE-YVKQRKYTLITVEEYAD  191 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H---HHHH-HHHHHTCCCCCHHHHHH
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H---HHHH-HHhcCCCCCCCHHHHHH
Confidence            999999999999877788999999999999   999999998776522111   0   0110 11112445679999999


Q ss_pred             HHHhcCCceeeEEecC
Q 043623          334 LFFDAGFTSYKITPLL  349 (359)
Q Consensus       334 ll~~aGf~~~~~~~~~  349 (359)
                      +|+++||+++++....
T Consensus       192 ~l~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          192 ILTACNFKNVVSKDLS  207 (266)
T ss_dssp             HHHHTTCEEEEEEECH
T ss_pred             HHHHcCCeEEEEEeCC
Confidence            9999999999887663

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.74  E-value=3e-17  Score=148.29  Aligned_cols=156  Identities=16%  Similarity=0.124  Sum_probs=121.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++       .++++++.+|+.+ +++ 
T Consensus        51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            45666665  6678899999999999999999987 679999999 777766553       4689999999988 665 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                       .||+|++..++|++++.  .++|++++++|+|   ||++++.+..........    .....+........+..++.++
T Consensus       128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  198 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDE  198 (273)
T ss_dssp             TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHH
T ss_pred             CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHH
Confidence             49999999999999876  5789999999999   999999998775533221    1111221112223566789999


Q ss_pred             HHHHHHhcCCceeeEEecC
Q 043623          331 WERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~  349 (359)
                      |.++++++||+++++...+
T Consensus       199 ~~~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          199 YESDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHHHcCCeEEEEEECc
Confidence            9999999999999887763

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.74  E-value=2.6e-18  Score=150.77  Aligned_cols=160  Identities=14%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh  263 (359)
                      ++..+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ..+++++.+|+.+ +++  .||+|++..++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            4578999999999999999999877  8999999 788877654     3789999999988 554  499999999987


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh---hcC------------------
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT---CVP------------------  322 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------  322 (359)
                      ++..++..++|++++++|+|   ||++++.++..+...... ...........+..   ...                  
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR  190 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence            77777778999999999999   999999877532211000 00000000111000   000                  


Q ss_pred             CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      ...+. .+|.++|+++||+.+++..++....+|+.++
T Consensus       191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence            11122 4899999999999999999987778888763

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.73  E-value=5.7e-17  Score=141.19  Aligned_cols=160  Identities=20%  Similarity=0.196  Sum_probs=114.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCCCCC--CccEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQSIP--SADAF  256 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~~~~--~~D~i  256 (359)
                      ..++..+. ...+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++  ..+++++.+|+.+..+  .||+|
T Consensus        35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v  111 (218)
T 3ou2_A           35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV  111 (218)
T ss_dssp             HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred             HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence            34444443 1456679999999999999999998  569999999 778877765  3789999999988433  49999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC-------CcccCHH
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP-------GIERSEK  329 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~t~~  329 (359)
                      ++.+++|++++++...+|+++++.|+|   ||.+++.+...+.......+ . .............       ....+.+
T Consensus       112 ~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (218)
T 3ou2_A          112 FFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQD-D-SEPEVAVRRTLQDGRSFRIVKVFRSPA  186 (218)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHH
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhh-h-cccccceeeecCCcchhhHhhcCCCHH
Confidence            999999999998788999999999999   99999998876433211100 0 0000000000011       2245999


Q ss_pred             HHHHHHHhcCCceeeEEecC
Q 043623          330 EWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~~~  349 (359)
                      +|.++|+++||++......+
T Consensus       187 ~~~~~l~~aGf~v~~~~~~~  206 (218)
T 3ou2_A          187 ELTERLTALGWSCSVDEVHP  206 (218)
T ss_dssp             HHHHHHHHTTEEEEEEEEET
T ss_pred             HHHHHHHHCCCEEEeeeccc
Confidence            99999999999954444333

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.73  E-value=3.9e-17  Score=146.08  Aligned_cols=152  Identities=10%  Similarity=0.052  Sum_probs=117.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++       .++++++.+|+.+ +.+ 
T Consensus        26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  102 (256)
T 1nkv_A           26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE  102 (256)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence            34555555  6678899999999999999999987 579999999 778777653       3689999999988 443 


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++..++|++++.  .++|++++++|||   ||++++.++.........   .   .... .........++.++|
T Consensus       103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~  170 (256)
T 1nkv_A          103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQA-CGVSSTSDFLTLPGL  170 (256)
T ss_dssp             CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHT-TTCSCGGGSCCHHHH
T ss_pred             CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHH-HhcccccccCCHHHH
Confidence            49999999999999874  5789999999999   999999998765543321   1   1111 111112355799999


Q ss_pred             HHHHHhcCCceeeEEec
Q 043623          332 ERLFFDAGFTSYKITPL  348 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~~  348 (359)
                      .++|+++||+++++...
T Consensus       171 ~~~l~~aGf~~~~~~~~  187 (256)
T 1nkv_A          171 VGAFDDLGYDVVEMVLA  187 (256)
T ss_dssp             HHHHHTTTBCCCEEEEC
T ss_pred             HHHHHHCCCeeEEEEeC
Confidence            99999999999887654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.72  E-value=5.9e-17  Score=145.47  Aligned_cols=152  Identities=13%  Similarity=0.287  Sum_probs=117.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--  251 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++..+  +++++|+ +.+++.+++      .++++++.+|+.+ +++  
T Consensus        27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            55666665  56788999999999999999999875  8999998 788877653      3679999999988 665  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhh-hcCCcccCHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMT-CVPGIERSEK  329 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~t~~  329 (359)
                      .||+|++..++|++++..  .+|++++++|+|   ||++++.+...+....      ....... .... ......++.+
T Consensus       103 ~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  171 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKS  171 (260)
T ss_dssp             CEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred             CEEEEEEhhhhHhcCCHH--HHHHHHHHHcCC---CCEEEEEEcCCCCCHH------HHHHHHHHHHhcCccccCCCCHH
Confidence            499999999999999864  789999999999   9999999887654311      1111111 1111 1234567999


Q ss_pred             HHHHHHHhcCCceeeEEec
Q 043623          330 EWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~~  348 (359)
                      +|.++|+++||+++.+...
T Consensus       172 ~~~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          172 DWLKMLEEAGFELEELHCF  190 (260)
T ss_dssp             HHHHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHHHCCCeEEEEEEe
Confidence            9999999999998877654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.72  E-value=6.6e-17  Score=147.27  Aligned_cols=161  Identities=14%  Similarity=0.124  Sum_probs=120.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~  252 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++       .++++++.+|+.+ + ..
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  129 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP  129 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence            34555555  66778999999999999999997765 49999999 777776653       3689999999976 5 56


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC-----CchHHHHHHHhhh-hhhhhcCCccc
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD-----KPEITEAKLLYDA-LMMTCVPGIER  326 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~g~~~  326 (359)
                      ||+|++..++||+++++..++|++++++|||   ||++++.+........     .+.........+. ......++..+
T Consensus       130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (287)
T 1kpg_A          130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP  206 (287)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             eeEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCC
Confidence            9999999999999766677899999999999   9999999887654211     0000000011111 11122467778


Q ss_pred             CHHHHHHHHHhcCCceeeEEecC
Q 043623          327 SEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      +.++|.++++++||+++++...+
T Consensus       207 s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          207 SIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             CHHHHHHHHHTTTCEEEEEEECH
T ss_pred             CHHHHHHHHHhCCcEEEEEEeCc
Confidence            99999999999999999987653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.72  E-value=2.9e-17  Score=145.26  Aligned_cols=162  Identities=15%  Similarity=0.101  Sum_probs=117.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEe-cchhccCCh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLF-KLIFHDYDD  267 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~-~~vlh~~~d  267 (359)
                      .+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            5678999999999999999999876  8999999 788887765 5679999999988 554 4999995 559988854


Q ss_pred             -hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH--------------------HHHHhhhhhhhhc-CC--
Q 043623          268 -EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE--------------------AKLLYDALMMTCV-PG--  323 (359)
Q Consensus       268 -~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~g--  323 (359)
                       ++..++|++++++|+|   ||++++.++..++.........                    ......+.+.... ++  
T Consensus       117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV  193 (239)
T ss_dssp             HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence             5678999999999999   8999887765544321100000                    0000001111111 11  


Q ss_pred             ---------cccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          324 ---------IERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       324 ---------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                               +.++.++|.++|+++||++..+....+...+++++|
T Consensus       194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                     346999999999999998877766666677888875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.72  E-value=7.3e-17  Score=147.70  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=118.5

Q ss_pred             HHHHHhc----ccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-
Q 043623          182 KLIIKDC----KHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-  248 (359)
Q Consensus       182 ~~l~~~~----~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-  248 (359)
                      ..++..+    .  +.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++       .++++++.+|+.+ 
T Consensus        68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  144 (297)
T 2o57_A           68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  144 (297)
T ss_dssp             HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence            3455555    3  5678899999999999999999986 469999999 777776653       4789999999998 


Q ss_pred             CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623          249 SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER  326 (359)
Q Consensus       249 ~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (359)
                      +++  .||+|++..++||+++.  .++|++++++|+|   ||++++.++...+.....   .....+...    ......
T Consensus       145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~  212 (297)
T 2o57_A          145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMG  212 (297)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCC
T ss_pred             CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCC
Confidence            665  49999999999999884  6889999999999   999999998876543321   111111111    112345


Q ss_pred             CHHHHHHHHHhcCCceeeEEecC
Q 043623          327 SEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      +.++|.++|+++||+++++..+.
T Consensus       213 ~~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          213 SLGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             CHHHHHHHHHHTTEEEEEEEECH
T ss_pred             CHHHHHHHHHHCCCeEEEEEECc
Confidence            89999999999999999887653

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.71  E-value=2.4e-17  Score=151.78  Aligned_cols=165  Identities=12%  Similarity=0.078  Sum_probs=119.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIIS-EAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++       .++++++.+|+.+ +++ .||+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            5678899999999999999996 6789999999999 778776653       4569999999988 544 599999999


Q ss_pred             hhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch------HHHHH-HHhhhhhhhhcC---CcccCHH
Q 043623          261 IFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE------ITEAK-LLYDALMMTCVP---GIERSEK  329 (359)
Q Consensus       261 vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~---g~~~t~~  329 (359)
                      ++|++++.+ ..++|++++++|+|   ||++++.+...+.......      ..... ......+....+   ...++.+
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA  272 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence            999996554 45689999999999   9999998866543321110      00000 000011111111   2447999


Q ss_pred             HHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623          330 EWERLFFDAGFTSYKITPLL-GLRSFIEVYL  359 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~  359 (359)
                      +|.++|+++||+++++.... +....+.++|
T Consensus       273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence            99999999999999998764 4455666665

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.71  E-value=1.3e-16  Score=144.56  Aligned_cols=140  Identities=19%  Similarity=0.319  Sum_probs=110.7

Q ss_pred             CCCeEEEEcCCc---hHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCC------------C--C
Q 043623          194 GLSSLVEVGGGT---GSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQS------------I--P  251 (359)
Q Consensus       194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~------------~--~  251 (359)
                      +..+|||||||+   |.++..+.+.+|+.+++++|+ |.+++.+++    .++++++.+|+.++            +  .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   999888888899999999999 888887764    57899999999761            2  3


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++..+||++++++..++|++++++|+|   ||+|++.+...+.   ..   ......+.+.........++.+++
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~s~~ei  227 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG---LP---AQQKLARITRENLGEGWARTPEEI  227 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS---CH---HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc---hH---HHHHHHHHHHhcCCCCccCCHHHH
Confidence            59999999999999987788999999999999   9999999987532   11   111122222222234567899999


Q ss_pred             HHHHHhcCCceee
Q 043623          332 ERLFFDAGFTSYK  344 (359)
Q Consensus       332 ~~ll~~aGf~~~~  344 (359)
                      .++|  .||++++
T Consensus       228 ~~~l--~G~~l~~  238 (274)
T 2qe6_A          228 ERQF--GDFELVE  238 (274)
T ss_dssp             HHTT--TTCEECT
T ss_pred             HHHh--CCCeEcc
Confidence            9999  5998776

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=3.7e-17  Score=141.14  Aligned_cols=138  Identities=14%  Similarity=0.073  Sum_probs=112.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCChhH
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEV  269 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~  269 (359)
                      +.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++  .||+|++.+++|++++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            689999999999999999997  558999999 788887765 6789999999988 544  499999999999998777


Q ss_pred             HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623          270 CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       270 ~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      ..++|++++++|+|   ||++++..+.........             ........++.++|.++|+++||+++++...+
T Consensus       120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPMY-------------HPVATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEEC-------------CSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HHHHHHHHHHHcCC---CcEEEEEEccCCchhhhh-------------chhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence            78999999999999   999998876544311100             00112345689999999999999999998775


Q ss_pred             C
Q 043623          350 G  350 (359)
Q Consensus       350 ~  350 (359)
                      .
T Consensus       184 ~  184 (203)
T 3h2b_A          184 R  184 (203)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.70  E-value=8.4e-17  Score=142.75  Aligned_cols=152  Identities=18%  Similarity=0.295  Sum_probs=117.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--  251 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++..+  +++++|+ +.+++.+++      ..+++++.+|+.+ +++  
T Consensus        11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A           11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            45566555  67889999999999999999999875  8999999 778776653      3689999999987 655  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhh-hcCCcccCHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMT-CVPGIERSEK  329 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~t~~  329 (359)
                      .||+|++..++|++++.  .++|++++++|+|   ||++++.+...+...      .....+.. .... ......++.+
T Consensus        87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  155 (239)
T 1xxl_A           87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLS  155 (239)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHH
T ss_pred             cEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCCCHH
Confidence            49999999999999875  4789999999999   999999988765431      11111111 1111 1234567999


Q ss_pred             HHHHHHHhcCCceeeEEec
Q 043623          330 EWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~~  348 (359)
                      +|.++|+++||+++++...
T Consensus       156 ~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          156 EWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             HHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHCCCcEEEEEee
Confidence            9999999999998887654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.70  E-value=5e-17  Score=147.19  Aligned_cols=152  Identities=15%  Similarity=0.293  Sum_probs=115.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      .++++++.+|+.+ +++  .||+|++.++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            56788999999999999999999999999999999 777776653      3579999999988 554  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh--hhhhhcCCcccCHHHHHHHHHhcC
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA--LMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      +|++++..  .+|++++++|+|   ||.+++.+.........+........+..  ......++..++..+|.++|+++|
T Consensus       115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG  189 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG  189 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred             hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence            99998865  789999999999   99999988654322111100011111111  112234566678899999999999


Q ss_pred             CceeeEEec
Q 043623          340 FTSYKITPL  348 (359)
Q Consensus       340 f~~~~~~~~  348 (359)
                      |+++++...
T Consensus       190 f~~v~~~~~  198 (276)
T 3mgg_A          190 FEKIRVEPR  198 (276)
T ss_dssp             CEEEEEEEE
T ss_pred             CCeEEEeeE
Confidence            999988754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.70  E-value=2.3e-16  Score=145.67  Aligned_cols=154  Identities=14%  Similarity=0.098  Sum_probs=117.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      ..+++.+. .+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++       .++++++.+|+.+ +++ 
T Consensus       106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  183 (312)
T 3vc1_A          106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK  183 (312)
T ss_dssp             HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred             HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence            34455443 24567899999999999999999985 579999999 778877653       3689999999998 655 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                       .||+|++..++|+++   ..++|++++++|+|   ||++++.+....+......  ..........    ....++.++
T Consensus       184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~s~~~  251 (312)
T 3vc1_A          184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQPS--KWVSQINAHF----ECNIHSRRE  251 (312)
T ss_dssp             TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSCC--HHHHHHHHHH----TCCCCBHHH
T ss_pred             CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccchh--HHHHHHHhhh----cCCCCCHHH
Confidence             499999999999994   56889999999999   9999999988776442210  1111111111    123668999


Q ss_pred             HHHHHHhcCCceeeEEecC
Q 043623          331 WERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~  349 (359)
                      |.++|+++||+++++..++
T Consensus       252 ~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          252 YLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             HHHHHHTTTEEEEEEEECH
T ss_pred             HHHHHHHCCCEEEEEEeCC
Confidence            9999999999999987753

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.70  E-value=2.5e-16  Score=139.70  Aligned_cols=141  Identities=17%  Similarity=0.269  Sum_probs=111.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccEEEecchhccC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDY  265 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~  265 (359)
                      ++++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.  ++++.+|+.+   +++  .||+|++..++|++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~  114 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL  114 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence            456789999999999999999998  557999999 7888877644  8999999876   444  49999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~  345 (359)
                      ++++...+|++++++|+|   ||++++..+....      ...   ..... ........++.++|.++++++||+++++
T Consensus       115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~------~~~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~  181 (240)
T 3dli_A          115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTS------LYS---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI  181 (240)
T ss_dssp             CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTS------HHH---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred             CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcch------hHH---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence            988788999999999999   9999987664211      101   11111 1112345678999999999999999888


Q ss_pred             EecC
Q 043623          346 TPLL  349 (359)
Q Consensus       346 ~~~~  349 (359)
                      ....
T Consensus       182 ~~~~  185 (240)
T 3dli_A          182 EFFE  185 (240)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.70  E-value=7.6e-17  Score=143.97  Aligned_cols=148  Identities=19%  Similarity=0.285  Sum_probs=116.2

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Ccc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SAD  254 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~D  254 (359)
                      .+++.++  ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++    ..+++++.+|+.+ +++  .||
T Consensus        84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence            4555554  4567899999999999999999886 457999998 778776654    3689999999987 554  499


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL  334 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l  334 (359)
                      +|++.+++|++++++..++|++++++|+|   ||++++.+.........         .+    .......++.++|.++
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~  224 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VD----KEDSSLTRSDIHYKRL  224 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EE----TTTTEEEBCHHHHHHH
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ec----ccCCcccCCHHHHHHH
Confidence            99999999999988888999999999999   99999988754332111         00    0112335699999999


Q ss_pred             HHhcCCceeeEEecC
Q 043623          335 FFDAGFTSYKITPLL  349 (359)
Q Consensus       335 l~~aGf~~~~~~~~~  349 (359)
                      |+++||+++++....
T Consensus       225 l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          225 FNESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHHTCCEEEEEECT
T ss_pred             HHHCCCEEEEeeecC
Confidence            999999999987764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.70  E-value=1.3e-16  Score=141.36  Aligned_cols=143  Identities=19%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccEEEecchhcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHD  264 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~  264 (359)
                      ++++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++   ..+++++.+|+.+ +++  .||+|++.+++||
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  128 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW  128 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence            356789999999999999999997  568999999 778777654   5789999999998 654  4999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                      +++.  ..+|+++++.|+|   ||.+++.+..........       .+............++.+++.++++++||++++
T Consensus       129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  196 (242)
T 3l8d_A          129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN-------SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD  196 (242)
T ss_dssp             SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG-------GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred             ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh-------hhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence            9875  4789999999999   999998886543321110       111111111234557999999999999999999


Q ss_pred             EEec
Q 043623          345 ITPL  348 (359)
Q Consensus       345 ~~~~  348 (359)
                      +..+
T Consensus       197 ~~~~  200 (242)
T 3l8d_A          197 GIGV  200 (242)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            8755

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.69  E-value=5.9e-17  Score=143.22  Aligned_cols=132  Identities=15%  Similarity=0.205  Sum_probs=108.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD  264 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~  264 (359)
                      ..+|||||||+|.++..+++  ++.+++++|+ +.+++.+++       ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            45999999999999999976  5678999999 778776653       3569999999998 332 4999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                      +++++..++|++++++|+|   ||++++.+.........+                  ...++.++|.++|+++||++++
T Consensus       145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence            9977788999999999999   999998877654332221                  0114899999999999999999


Q ss_pred             EEecC
Q 043623          345 ITPLL  349 (359)
Q Consensus       345 ~~~~~  349 (359)
                      +...+
T Consensus       204 ~~~~~  208 (235)
T 3lcc_A          204 VEENP  208 (235)
T ss_dssp             EEECT
T ss_pred             EEecC
Confidence            88764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=1.4e-16  Score=146.31  Aligned_cols=163  Identities=14%  Similarity=0.147  Sum_probs=122.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~  253 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++       .++++++.+|+.+....|
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  138 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  138 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence            44566665  67788999999999999999999977 79999999 778877653       458999999997652359


Q ss_pred             cEEEecchhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-----HHHHHhhh-hhhhh
Q 043623          254 DAFLFKLIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-----EAKLLYDA-LMMTC  320 (359)
Q Consensus       254 D~i~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~~~-~~~~~  320 (359)
                      |+|++..++|++++       +....+|++++++|+|   ||++++.+...++........     ......+. .....
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF  215 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence            99999999999954       5567899999999999   999999988765432100000     00000011 11123


Q ss_pred             cCCcccCHHHHHHHHHhcCCceeeEEecCC
Q 043623          321 VPGIERSEKEWERLFFDAGFTSYKITPLLG  350 (359)
Q Consensus       321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~  350 (359)
                      .++..++.+++.++++++||+++++...+.
T Consensus       216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~  245 (302)
T 3hem_A          216 PGGRLPRISQVDYYSSNAGWKVERYHRIGA  245 (302)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence            567888999999999999999999887643

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.69  E-value=1.8e-16  Score=141.77  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=112.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..+++.+|. +++++|+ +.+++.+++       .++++++.+|+.+ +++  .||+|++..
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG  122 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence            566789999999999999999999986 9999999 777776553       4679999999987 654  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      ++|+++   ..++|+++++.|+|   ||++++.++.........   .   ....+..  .....++.++|.++|+++||
T Consensus       123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf  188 (257)
T 3f4k_A          123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTCIDKMERAGY  188 (257)
T ss_dssp             CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHHHHHHHHTTE
T ss_pred             hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence            999984   34789999999999   999999998755543321   1   1111111  11235689999999999999


Q ss_pred             ceeeEEecC
Q 043623          341 TSYKITPLL  349 (359)
Q Consensus       341 ~~~~~~~~~  349 (359)
                      +++++...+
T Consensus       189 ~~v~~~~~~  197 (257)
T 3f4k_A          189 TPTAHFILP  197 (257)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEECC
Confidence            999988765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.69  E-value=1.9e-16  Score=146.44  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=121.2

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~  253 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++       .++++++.+|+.+....|
T Consensus        80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  156 (318)
T 2fk8_A           80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  156 (318)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence            34555555  5677899999999999999999986 569999999 777776653       367999999987622469


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC----chHHH-HHHHhhhhh-hhhcCCcccC
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK----PEITE-AKLLYDALM-MTCVPGIERS  327 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~----~~~~~-~~~~~~~~~-~~~~~g~~~t  327 (359)
                      |+|++..++|++++++..++|++++++|+|   ||++++.++..+.....    .+... .....+... ....++..++
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  233 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS  233 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence            999999999999877778999999999999   99999998876552110    00000 000111111 1124577789


Q ss_pred             HHHHHHHHHhcCCceeeEEecC
Q 043623          328 EKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      .++|.++++++||+++++...+
T Consensus       234 ~~~~~~~l~~aGf~~~~~~~~~  255 (318)
T 2fk8_A          234 TEMMVEHGEKAGFTVPEPLSLR  255 (318)
T ss_dssp             HHHHHHHHHHTTCBCCCCEECH
T ss_pred             HHHHHHHHHhCCCEEEEEEecc
Confidence            9999999999999999887653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.68  E-value=1.7e-16  Score=143.07  Aligned_cols=143  Identities=13%  Similarity=0.113  Sum_probs=113.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++       .++++++.+|+.+ +++  .||+|++..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~  122 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG  122 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence            467789999999999999999998 8889999999 777776654       3789999999988 654  499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      ++|+++   ..++|++++++|+|   ||++++.+..........   .   ....+.  ......++.+++.++++++||
T Consensus       123 ~~~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~l~~aGf  188 (267)
T 3kkz_A          123 AIYNIG---FERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWM--DAYPEIDTIPNQVAKIHKAGY  188 (267)
T ss_dssp             CGGGTC---HHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHH--HHCTTCEEHHHHHHHHHHTTE
T ss_pred             CceecC---HHHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHH--HhCCCCCCHHHHHHHHHHCCC
Confidence            999993   35789999999999   999999998765543332   1   111111  112245689999999999999


Q ss_pred             ceeeEEecC
Q 043623          341 TSYKITPLL  349 (359)
Q Consensus       341 ~~~~~~~~~  349 (359)
                      +++++..++
T Consensus       189 ~~v~~~~~~  197 (267)
T 3kkz_A          189 LPVATFILP  197 (267)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            999998875

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.68  E-value=1.1e-16  Score=146.93  Aligned_cols=169  Identities=15%  Similarity=0.209  Sum_probs=117.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCceEEeCCCCC-CC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----T----DNLKFIAGDMNQ-SI  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~----~rv~~~~~d~~~-~~  250 (359)
                      ..+++.++   .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     .    .+|+++.+|+.+ +.
T Consensus        73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            45555544   33459999999999999999997  568999999 788887764     1    789999999998 55


Q ss_pred             C-CccEEEec-chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC---Cc--hHH-HHHHHhhhhh-----
Q 043623          251 P-SADAFLFK-LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD---KP--EIT-EAKLLYDALM-----  317 (359)
Q Consensus       251 ~-~~D~i~~~-~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~---~~--~~~-~~~~~~~~~~-----  317 (359)
                      + .||+|++. .++|++++++..++|++++++|+|   ||++++..+.......   ..  .+. .....+.+..     
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  224 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA  224 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence            5 49988865 778888887788999999999999   8998887665432100   00  000 0000000000     


Q ss_pred             -----hh-h-------------cCCcccCHHHHHHHHHhcCCceeeEEecCC------cceEEEEE
Q 043623          318 -----MT-C-------------VPGIERSEKEWERLFFDAGFTSYKITPLLG------LRSFIEVY  358 (359)
Q Consensus       318 -----~~-~-------------~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~~i~~~  358 (359)
                           .. .             ...+.++.++|.++|+++||+++++.+++.      ...++++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~  290 (299)
T 3g2m_A          225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV  290 (299)
T ss_dssp             EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred             ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence                 00 0             011246999999999999999999988752      23567665

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.68  E-value=8.5e-17  Score=134.84  Aligned_cols=147  Identities=19%  Similarity=0.252  Sum_probs=116.2

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCCCccEEEecc
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~~~D~i~~~~  260 (359)
                      +++.++  ..++.+|||||||+|.++..+++...  +++++|+ +.+++.+++ .++++++.+| .. +...||+|++..
T Consensus         9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~   83 (170)
T 3i9f_A            9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFAN   83 (170)
T ss_dssp             THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEES
T ss_pred             HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEcc
Confidence            344444  56778999999999999999999874  8999999 778877765 6789999999 32 333599999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      ++|++++.  ..+|+++++.|+|   ||++++.++........++                ....++.++|.++|+  ||
T Consensus        84 ~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--Gf  140 (170)
T 3i9f_A           84 SFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--NF  140 (170)
T ss_dssp             CSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--TE
T ss_pred             chhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--Cc
Confidence            99999865  4789999999999   9999999887655433220                012258999999999  99


Q ss_pred             ceeeEEecCCcceEEEEE
Q 043623          341 TSYKITPLLGLRSFIEVY  358 (359)
Q Consensus       341 ~~~~~~~~~~~~~~i~~~  358 (359)
                      +++++...+.....+.++
T Consensus       141 ~~~~~~~~~~~~~~l~~~  158 (170)
T 3i9f_A          141 VVEKRFNPTPYHFGLVLK  158 (170)
T ss_dssp             EEEEEECSSTTEEEEEEE
T ss_pred             EEEEccCCCCceEEEEEe
Confidence            999999997666655554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.68  E-value=3e-16  Score=148.96  Aligned_cols=145  Identities=16%  Similarity=0.269  Sum_probs=114.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCceEEeCCCCC-------
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPET--------------DNLKFIAGDMNQ-------  248 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~~--------------~rv~~~~~d~~~-------  248 (359)
                      ..++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++.              ++++++.+|+.+       
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            3467899999999999999999986 7889999999 7787776541              699999999987       


Q ss_pred             CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623          249 SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER  326 (359)
Q Consensus       249 ~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (359)
                      +++  .||+|++..++|++++.  .++|++++++|||   ||++++.+..........      ............+..+
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  229 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGAL  229 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCC
T ss_pred             CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCC
Confidence            444  49999999999999875  4789999999999   999999988765432221      1112222223345667


Q ss_pred             CHHHHHHHHHhcCCceeeEEe
Q 043623          327 SEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~  347 (359)
                      +.++|.++|+++||+.+++..
T Consensus       230 ~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          230 YLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             BHHHHHHHHHHTTCCCEEEEE
T ss_pred             CHHHHHHHHHHCCCceEEEEe
Confidence            899999999999999887654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=3.7e-16  Score=140.50  Aligned_cols=151  Identities=11%  Similarity=0.190  Sum_probs=114.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFL  257 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~  257 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++  |+.+++++|+ +.+++.++...+++++.+|+.+ +++  .||+|+
T Consensus        24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~   99 (261)
T 3ege_A           24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI   99 (261)
T ss_dssp             HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred             HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence            44555554  56789999999999999999998  6789999999 8899988876699999999988 665  499999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD  337 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~  337 (359)
                      +.+++|++++.  .++|++++++||    ||++++.+...+......   .. ..+. ......+...++.+++. +|++
T Consensus       100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~---~~-~~~~-~~~~~~~~~~~~~~~~~-~l~~  167 (261)
T 3ege_A          100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRIW---LY-DYFP-FLWEDALRFLPLDEQIN-LLQE  167 (261)
T ss_dssp             EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCCG---GG-GTCH-HHHHHHHTSCCHHHHHH-HHHH
T ss_pred             EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHHH---HH-HHHH-HHhhhhhhhCCCHHHHH-HHHH
Confidence            99999999775  478999999998    489999888654332211   00 0000 00111223445778899 9999


Q ss_pred             cCCceeeEEec
Q 043623          338 AGFTSYKITPL  348 (359)
Q Consensus       338 aGf~~~~~~~~  348 (359)
                      +||+.+++...
T Consensus       168 aGF~~v~~~~~  178 (261)
T 3ege_A          168 NTKRRVEAIPF  178 (261)
T ss_dssp             HHCSEEEEEEC
T ss_pred             cCCCceeEEEe
Confidence            99999888765

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.67  E-value=1.4e-16  Score=138.41  Aligned_cols=138  Identities=14%  Similarity=0.058  Sum_probs=109.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC-CccEEEecchhccCChh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDDE  268 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d~  268 (359)
                      ++++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++..++.++.+|+.+ +.+ .||+|++..++|+++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  118 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD  118 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence            456789999999999999999987  569999999 7888877654478889999887 533 49999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC-CceeeEEe
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG-FTSYKITP  347 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~  347 (359)
                      +...+|+++++.|+|   ||++++............        .      ......++.++|.++|+++| |+++++..
T Consensus       119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~  181 (211)
T 3e23_A          119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRDK--------L------ARYYNYPSEEWLRARYAEAGTWASVAVES  181 (211)
T ss_dssp             HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEECT--------T------SCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred             HHHHHHHHHHHhcCC---CcEEEEEEcCCCcccccc--------c------chhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence            888999999999999   899888754332211100        0      00123469999999999999 99999876


Q ss_pred             c
Q 043623          348 L  348 (359)
Q Consensus       348 ~  348 (359)
                      .
T Consensus       182 ~  182 (211)
T 3e23_A          182 S  182 (211)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.67  E-value=1.2e-16  Score=141.91  Aligned_cols=138  Identities=13%  Similarity=0.260  Sum_probs=111.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh  263 (359)
                      ++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++      ..+++++.+|+.+ +.+  .||+|++.+++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            57899999999999999999876 568999999 778877654      2368899999877 444  499999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      ++++++..++|++++++|+|   ||++++.+......   .       .++    ...+...++.++|.++|+++||+++
T Consensus       158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~---~-------~~~----~~~~~~~~~~~~~~~~l~~aGf~~~  220 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEG---V-------ILD----DVDSSVCRDLDVVRRIICSAGLSLL  220 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSS---E-------EEE----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCc---c-------eec----ccCCcccCCHHHHHHHHHHcCCeEE
Confidence            99998888999999999999   99999999876541   0       010    0112334589999999999999999


Q ss_pred             eEEecC
Q 043623          344 KITPLL  349 (359)
Q Consensus       344 ~~~~~~  349 (359)
                      ++....
T Consensus       221 ~~~~~~  226 (241)
T 2ex4_A          221 AEERQE  226 (241)
T ss_dssp             EEEECC
T ss_pred             EeeecC
Confidence            998764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.67  E-value=1.2e-15  Score=144.35  Aligned_cols=215  Identities=11%  Similarity=0.059  Sum_probs=139.9

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCCCCChh
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDKPYCLS  117 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~~~~~~  117 (359)
                      ++|..| .  +|.|++|||+.+|+   +++.+++||++|.+.|+++..         ++ |++++.+. ++....+.+..
T Consensus        47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~~~~  110 (373)
T 2qm3_A           47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIGKRY  110 (373)
T ss_dssp             HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred             HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCccccc
Confidence            778888 4  68999999999999   689999999999999999875         35 99999766 55442221211


Q ss_pred             HHHHHhcC--c----cccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc
Q 043623          118 PFVLLVTD--A----AFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI  191 (359)
Q Consensus       118 ~~~~~~~~--~----~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~  191 (359)
                      +.+.....  .    .+...|..+.+.++ .. +.+.. .++..    + ..++  ....           .++......
T Consensus       111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~-~~-~~~~~-~~~~~----~-~~~~--~~~~-----------~~l~~~~~~  169 (373)
T 2qm3_A          111 DFTCPHCQGKTVDLQAFADLLEQFREIVK-DR-PEPLH-EFDQA----Y-VTPE--TTVA-----------RVILMHTRG  169 (373)
T ss_dssp             C------------CGGGHHHHHHHHHHHT-TC-CCCCG-GGTCC----C-BCHH--HHHH-----------HHHHHHHTT
T ss_pred             cccchhhcCCCcchhhhHHHHHHHHHHHh-cC-Cccch-hcCCe----e-cCHH--HHHH-----------HHHHHhhcC
Confidence            11100000  0    01113445556565 22 11110 11100    0 0111  1111           111101101


Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-----CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-----SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-----~~D~i~~~  259 (359)
                      ..++.+||||| |+|.++..+++..|+.+++++|+ +.+++.+++      ..+|+++.+|+.+++|     .||+|++.
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence            23468999999 99999999999988889999999 888887764      2389999999988332     49999998


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      ..++...   ...+++++.++|+|   ||++++++...
T Consensus       249 ~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~  280 (373)
T 2qm3_A          249 PPETLEA---IRAFVGRGIATLKG---PRCAGYFGITR  280 (373)
T ss_dssp             CCSSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred             CCCchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence            7765442   46889999999999   99877776653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.66  E-value=5.2e-16  Score=136.59  Aligned_cols=148  Identities=14%  Similarity=0.147  Sum_probs=109.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC-CCC--CccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ-SIP--SADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~-~~~--~~D~i  256 (359)
                      +++..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++           ..+++++.+|+.+ +++  .||+|
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            346789999999999999999998  669999999 777765543           2368999999988 554  49999


Q ss_pred             EecchhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc--------------
Q 043623          257 LFKLIFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV--------------  321 (359)
Q Consensus       257 ~~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  321 (359)
                      ++..++|++++.+ ..++|++++++|+|   ||++++.++........  + ..............              
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE  179 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence            9999999997643 56899999999999   99999998865432211  1 11111111111000              


Q ss_pred             -CCcccCHHHHHHHHHhcCCceeeEEe
Q 043623          322 -PGIERSEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       322 -~g~~~t~~e~~~ll~~aGf~~~~~~~  347 (359)
                       ....++.++|.++|+++||+++++..
T Consensus       180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          180 FIAHHFTEKELVFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             EEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             eeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence             11357999999999999999998864

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.66  E-value=4.6e-16  Score=141.69  Aligned_cols=151  Identities=13%  Similarity=0.178  Sum_probs=111.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vl  262 (359)
                      ..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++     ..+++++.+|+.+ +.+ .||+|++..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence            567799999999999999999999985 89999999 777776553     3489999999998 555 49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec-----C---CCCCCchHHHHHHHhhhhh--hhhcCCcccCHHHHH
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV-----N---EKKDKPEITEAKLLYDALM--MTCVPGIERSEKEWE  332 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~~g~~~t~~e~~  332 (359)
                      |++++..  ++|+++++.|+|   ||++++.++..     .   +....+.............  ....+....+..++.
T Consensus       100 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  174 (284)
T 3gu3_A          100 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP  174 (284)
T ss_dssp             GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred             hcCCCHH--HHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence            9998864  789999999999   99999988761     1   1111000000001111111  112345556778999


Q ss_pred             HHHHhcCCceeeEEe
Q 043623          333 RLFFDAGFTSYKITP  347 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~  347 (359)
                      ++|+++||+.+++..
T Consensus       175 ~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          175 IYLSELGVKNIECRV  189 (284)
T ss_dssp             HHHHHTTCEEEEEEE
T ss_pred             HHHHHcCCCeEEEEE
Confidence            999999999987743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.66  E-value=3e-16  Score=135.82  Aligned_cols=134  Identities=8%  Similarity=0.056  Sum_probs=105.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCceEEeCCCCC-CCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------------------TDNLKFIAGDMNQ-SIP  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------------------~~rv~~~~~d~~~-~~~  251 (359)
                      +.++.+|||+|||+|..+..++++  +.+++++|+ +.+++.+++                  ..+|+++.+|+++ +.+
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            457789999999999999999997  569999999 788877653                  2589999999998 543


Q ss_pred             ---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCH
Q 043623          252 ---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSE  328 (359)
Q Consensus       252 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~  328 (359)
                         .||+|++..++|++++++..+++++++++|||   ||+++++....+.....                 ......+.
T Consensus        98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~  157 (203)
T 1pjz_A           98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ  157 (203)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred             cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence               59999999999999988778899999999999   99855554333211000                 00112489


Q ss_pred             HHHHHHHHhcCCceeeEEec
Q 043623          329 KEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       329 ~e~~~ll~~aGf~~~~~~~~  348 (359)
                      +++.+++++ ||++..+...
T Consensus       158 ~el~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          158 TWLHRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             HHHHHTSCS-SEEEEEEEES
T ss_pred             HHHHHHhcC-CcEEEEeccc
Confidence            999999998 9998877655

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.66  E-value=3.6e-16  Score=139.70  Aligned_cols=157  Identities=13%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccE
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADA  255 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~  255 (359)
                      .+.+.++  ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++   ..+++++.+|+.+ +++  .||+
T Consensus        35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            3444444  346789999999999999999998665 8999999 778777654   5789999999987 654  4999


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC------------CCCCCchHHHHHHHhhhh-----hh
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN------------EKKDKPEITEAKLLYDAL-----MM  318 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~------------~~~~~~~~~~~~~~~~~~-----~~  318 (359)
                      |++..++|++++.  .++|++++++|+|   ||++++......            ........ ....+++..     ..
T Consensus       112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  185 (253)
T 3g5l_A          112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFL  185 (253)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEET
T ss_pred             EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeec
Confidence            9999999999764  5889999999999   899988643211            00000000 000000000     00


Q ss_pred             -hhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          319 -TCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       319 -~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                       .......++.++|.++|+++||+++++...
T Consensus       186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             TEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred             cccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence             001112349999999999999999998754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.65  E-value=1.1e-15  Score=138.74  Aligned_cols=153  Identities=15%  Similarity=0.146  Sum_probs=113.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFL  257 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~  257 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++  ++.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|+
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  122 (279)
T 3ccf_A           47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF  122 (279)
T ss_dssp             CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence            45666655  56778999999999999999998  7789999999 788877764 4789999999988 555 499999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh-hh------hcCCcccCHHH
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM-MT------CVPGIERSEKE  330 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~g~~~t~~e  330 (359)
                      +.+++|++++..  ++|++++++|+|   ||++++..+.....   ..  .......... ..      ......++.++
T Consensus       123 ~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (279)
T 3ccf_A          123 SNAMLHWVKEPE--AAIASIHQALKS---GGRFVAEFGGKGNI---KY--ILEALYNALETLGIHNPQALNPWYFPSIGE  192 (279)
T ss_dssp             EESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECTTTT---HH--HHHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred             EcchhhhCcCHH--HHHHHHHHhcCC---CcEEEEEecCCcch---HH--HHHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence            999999998754  789999999999   89988876543221   10  1111111100 00      01123568999


Q ss_pred             HHHHHHhcCCceeeEEec
Q 043623          331 WERLFFDAGFTSYKITPL  348 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~  348 (359)
                      |.++|+++||+++++...
T Consensus       193 ~~~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          193 YVNILEKQGFDVTYAALF  210 (279)
T ss_dssp             HHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHcCCEEEEEEEe
Confidence            999999999999887644

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.65  E-value=8.6e-16  Score=136.28  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=107.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCCCCC--CccEEEecchhccCCh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDD  267 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~~~d  267 (359)
                      .++.+|||||||+|.++..+++..+  +++++|+ +.+++.+++  ..+++++.+|+.+..+  .||+|++.++|||+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence            3567999999999999999999876  7999999 778877664  2289999999987423  4999999999999987


Q ss_pred             hHHHHHHHHHH-HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh---------hhhhcCCcccCHHHHHHHHHh
Q 043623          268 EVCLKLLKNCR-EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL---------MMTCVPGIERSEKEWERLFFD  337 (359)
Q Consensus       268 ~~~~~iL~~~~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~t~~e~~~ll~~  337 (359)
                      .  .++|++++ ++|+|   ||++++.++.....     ...........         .........++.++|.++|++
T Consensus       119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (250)
T 2p7i_A          119 P--VALLKRINDDWLAE---GGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  188 (250)
T ss_dssp             H--HHHHHHHHHTTEEE---EEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCC---CCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence            6  47899999 99999   99999987643221     00000000000         001123456799999999999


Q ss_pred             cCCceeeEEec
Q 043623          338 AGFTSYKITPL  348 (359)
Q Consensus       338 aGf~~~~~~~~  348 (359)
                      +||+++++...
T Consensus       189 ~Gf~~~~~~~~  199 (250)
T 2p7i_A          189 AGLQVTYRSGI  199 (250)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEEEeee
Confidence            99999988654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=8e-16  Score=134.36  Aligned_cols=144  Identities=10%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCceEEeCCCCC-CCC--CccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T----DNLKFIAGDMNQ-SIP--SADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~----~rv~~~~~d~~~-~~~--~~D~i  256 (359)
                      ..++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++       .    .+++++.+|+.. +.+  .||+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred             hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence            34578999999999999999999999899999999 778877654       1    289999999976 432  59999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH----
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE----  332 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~----  332 (359)
                      ++..++|++++++..++|+++++.|+|   ||.+++... ............      ..+........++.+++.    
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~  176 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTPN-KEYNFHYGNLFE------GNLRHRDHRFEWTRKEFQTWAV  176 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB-GGGGGCCCCT-----------GGGCCTTSBCHHHHHHHHH
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEccc-hhhhhhhcccCc------ccccccCceeeecHHHHHHHHH
Confidence            999999999988888999999999999   885544433 221111000000      000011223346888888    


Q ss_pred             HHHHhcCCceeeE
Q 043623          333 RLFFDAGFTSYKI  345 (359)
Q Consensus       333 ~ll~~aGf~~~~~  345 (359)
                      ++++++||++...
T Consensus       177 ~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          177 KVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHTEEEEEE
T ss_pred             HHHHHCCcEEEEE
Confidence            8899999976443

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.65  E-value=2.3e-15  Score=133.27  Aligned_cols=159  Identities=16%  Similarity=0.166  Sum_probs=109.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--Ccc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SAD  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D  254 (359)
                      ..+...++  ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++   ..+++++.+|+.+ +++  .||
T Consensus        33 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           33 PALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence            34455454  45678999999999999999998733 38999999 777776653   3579999999987 554  499


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC---CCCCchHH-------HHHHHh------hhhhh
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE---KKDKPEIT-------EAKLLY------DALMM  318 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~---~~~~~~~~-------~~~~~~------~~~~~  318 (359)
                      +|++..++|++++.  .++|++++++|+|   ||++++.......   ........       ....++      ..+..
T Consensus       110 ~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (243)
T 3bkw_A          110 LAYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA  184 (243)
T ss_dssp             EEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH
T ss_pred             EEEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc
Confidence            99999999999864  5789999999999   9999887643210   00000000       000000      00000


Q ss_pred             hhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          319 TCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       319 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      .......++.++|.++|+++||+++++...
T Consensus       185 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          185 KGVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             HSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence            011223368999999999999999998764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=7e-16  Score=138.05  Aligned_cols=151  Identities=10%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFL  257 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~  257 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|+
T Consensus        23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence            34555554  56778999999999999999999999999999999 788887765 5789999999988 522 499999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh--hhhh-----hcCCcccCHHH
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA--LMMT-----CVPGIERSEKE  330 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~g~~~t~~e  330 (359)
                      +..++|++++.  .++|+++++.|+|   ||++++..+.....   +...........  +...     ......++.++
T Consensus       101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T 2p35_A          101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD  172 (259)
T ss_dssp             EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred             EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence            99999999774  4789999999999   99999887643211   100000011110  0000     01235579999


Q ss_pred             HHHHHHhcCCce
Q 043623          331 WERLFFDAGFTS  342 (359)
Q Consensus       331 ~~~ll~~aGf~~  342 (359)
                      |.++|+++||++
T Consensus       173 ~~~~l~~aGf~v  184 (259)
T 2p35_A          173 YFNALSPKSSRV  184 (259)
T ss_dssp             HHHHHGGGEEEE
T ss_pred             HHHHHHhcCCce
Confidence            999999999974

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=1.9e-15  Score=136.63  Aligned_cols=159  Identities=12%  Similarity=0.158  Sum_probs=114.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCceEEeCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PH------VIADLPE-------TDNLKFIAGD-  245 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~i~~a~~-------~~rv~~~~~d-  245 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.+ |+.+++++|+ +.      +++.+++       .++|+++.+| 
T Consensus        33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence            34566555  6778899999999999999999995 8789999999 43      6665543       2689999998 


Q ss_pred             CCC---CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH-HHHHhhhhhhh
Q 043623          246 MNQ---SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE-AKLLYDALMMT  319 (359)
Q Consensus       246 ~~~---~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~  319 (359)
                      +..   +++  .||+|++..++|++++..  .+++.++..++|   ||++++.+...+...... ... ........+..
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  184 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA  184 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence            433   333  499999999999999875  478888888888   999999998876543221 100 00011101100


Q ss_pred             -h---cC--CcccCHHHHHHHHHhcCCceeeEEec
Q 043623          320 -C---VP--GIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       320 -~---~~--g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                       .   ..  ...++.++|.++++++||+++++..+
T Consensus       185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence             0   11  24679999999999999999888766

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.63  E-value=5.6e-16  Score=135.21  Aligned_cols=140  Identities=9%  Similarity=0.089  Sum_probs=103.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC-CCC--CccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ-SIP--SADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~-~~~--~~D~i  256 (359)
                      ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++           ..+++++.+|+.. +.+  .||+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            35678999999999999999999988889999999 777776653           1289999999876 433  59999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-hh---hhhhhcCCcccCHHHHH
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-DA---LMMTCVPGIERSEKEWE  332 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~~t~~e~~  332 (359)
                      ++..++|++++++..++|+++++.|+|   ||.+++......           ...+ .+   .+........++.+++.
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEY-----------NVKFANLPAGKLRHKDHRFEWTRSQFQ  172 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHH-----------HHHTC-----------CCSCBCHHHHH
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCccc-----------chhhcccccccccccccccccCHHHHH
Confidence            999999999988888999999999999   886655443110           0000 00   00001123446889988


Q ss_pred             ----HHHHhcCCceeeE
Q 043623          333 ----RLFFDAGFTSYKI  345 (359)
Q Consensus       333 ----~ll~~aGf~~~~~  345 (359)
                          ++++++||++...
T Consensus       173 ~~~~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          173 NWANKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHHcCceEEEE
Confidence                8999999987443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=8.6e-15  Score=124.76  Aligned_cols=133  Identities=13%  Similarity=0.113  Sum_probs=108.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAF  256 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i  256 (359)
                      ..++..+   ++++.+|||||||+|.++..+++.  +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+  .||+|
T Consensus        37 ~~~l~~~---~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           37 ARLIDAM---APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHHHH---SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE
T ss_pred             HHHHHHh---ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE
Confidence            3455544   356789999999999999999987  568999999 778777665 5679999999988 554  49999


Q ss_pred             Eec-chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623          257 LFK-LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF  335 (359)
Q Consensus       257 ~~~-~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll  335 (359)
                      ++. .++|+++++...++|+++++.|+|   ||.+++.....                          ..++.++|.+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l  162 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVA  162 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHH
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHH
Confidence            998 899999888788999999999999   89888764321                          114789999999


Q ss_pred             HhcCCceeeEEec
Q 043623          336 FDAGFTSYKITPL  348 (359)
Q Consensus       336 ~~aGf~~~~~~~~  348 (359)
                      +++||++.++...
T Consensus       163 ~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          163 ERVGLELENAFES  175 (195)
T ss_dssp             HHHTEEEEEEESS
T ss_pred             HHcCCEEeeeecc
Confidence            9999999887654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.63  E-value=2.4e-15  Score=128.96  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=112.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-S  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~  252 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++      ..+++++.+|+.+ +.+ .
T Consensus        22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (199)
T 2xvm_A           22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ   97 (199)
T ss_dssp             HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred             HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence            45555555  456689999999999999999987  569999999 778777653      2479999999987 544 4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++..++|++++++..++|++++++|+|   ||.+++++.........+               ......++.+++.
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~  159 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELR  159 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHH
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHH
Confidence            9999999999999977788999999999999   999998887655432211               0112345889999


Q ss_pred             HHHHhcCCceeeEEec
Q 043623          333 RLFFDAGFTSYKITPL  348 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~  348 (359)
                      ++|++  |++++....
T Consensus       160 ~~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          160 RYYEG--WERVKYNED  173 (199)
T ss_dssp             HHTTT--SEEEEEECC
T ss_pred             HHhcC--CeEEEeccc
Confidence            99987  998887543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.62  E-value=2e-16  Score=144.74  Aligned_cols=146  Identities=13%  Similarity=0.230  Sum_probs=104.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----------------------------
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T----------------------------  236 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~----------------------------  236 (359)
                      .++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|++       .                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            4578999999999999999999999999999999 777765542       0                            


Q ss_pred             -----------------------------CCceEEeCCCCC-C-------CCCccEEEecchhccC----ChhHHHHHHH
Q 043623          237 -----------------------------DNLKFIAGDMNQ-S-------IPSADAFLFKLIFHDY----DDEVCLKLLK  275 (359)
Q Consensus       237 -----------------------------~rv~~~~~d~~~-~-------~~~~D~i~~~~vlh~~----~d~~~~~iL~  275 (359)
                                                   .+|+|+.+|+.. +       .+.||+|++..+++++    +++...++|+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                         589999999986 3       1249999999999654    6777889999


Q ss_pred             HHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh--cCCceeeEEec
Q 043623          276 NCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD--AGFTSYKITPL  348 (359)
Q Consensus       276 ~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~  348 (359)
                      +++++|+|   ||++++....+.........  ....+.     ........++++.++|.+  +||+.+++...
T Consensus       205 ~~~~~Lkp---GG~lil~~~~~~~y~~~~~~--~~~~~~-----~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          205 RIYRHLRP---GGILVLEPQPWSSYGKRKTL--TETIYK-----NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHHEEE---EEEEEEECCCHHHHHTTTTS--CHHHHH-----HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHHhCC---CcEEEEecCCchhhhhhhcc--cHHHHh-----hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            99999999   88887753321100000000  000010     011122357899999999  99998888765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.62  E-value=1.3e-15  Score=135.07  Aligned_cols=161  Identities=11%  Similarity=0.054  Sum_probs=110.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecc-hhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKL-IFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~-vlh~  264 (359)
                      ++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     ..+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            5689999999999999999987  468999999 788877664     2389999999987 554 599999998 9999


Q ss_pred             CC-hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC---CCchH----HH-----------HHHHhhhhhhhhcC---
Q 043623          265 YD-DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK---DKPEI----TE-----------AKLLYDALMMTCVP---  322 (359)
Q Consensus       265 ~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~---~~~~~----~~-----------~~~~~~~~~~~~~~---  322 (359)
                      ++ +++..++|++++++|+|   ||.+++.-.......   .....    ..           ......+.+....+   
T Consensus       115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY  191 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred             cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence            84 36678999999999999   888877332210000   00000    00           00000000000011   


Q ss_pred             --------CcccCHHHHHHHHHhcCCceeeEEec--------CCcceEEEEEC
Q 043623          323 --------GIERSEKEWERLFFDAGFTSYKITPL--------LGLRSFIEVYL  359 (359)
Q Consensus       323 --------g~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~~i~~~~  359 (359)
                              .+.++.++|.++|+++||+++++...        .....+++++|
T Consensus       192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK  244 (246)
T 1y8c_A          192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence                    24569999999999999999998754        12344666664

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.62  E-value=6.3e-16  Score=140.69  Aligned_cols=146  Identities=16%  Similarity=0.180  Sum_probs=108.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CC--CccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IP--SADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~--~~D~i~~~~v  261 (359)
                      ++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++       .++++++.+|+.+ + ++  .||+|++.++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            4679999999999999999997  679999999 778877664       2789999999988 3 33  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh--------hcCCcccCHHHHHH
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT--------CVPGIERSEKEWER  333 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~t~~e~~~  333 (359)
                      +|++++.  .++|++++++|+|   ||.+++..+.........   .....+......        ......++.++|.+
T Consensus       146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (285)
T 4htf_A          146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL  217 (285)
T ss_dssp             GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred             hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence            9999876  4789999999999   999998876532210000   000000000000        01235578999999


Q ss_pred             HHHhcCCceeeEEecC
Q 043623          334 LFFDAGFTSYKITPLL  349 (359)
Q Consensus       334 ll~~aGf~~~~~~~~~  349 (359)
                      +|+++||+++++..+.
T Consensus       218 ~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          218 WLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             HHHHTTCEEEEEEEES
T ss_pred             HHHHCCCceeeeeeEE
Confidence            9999999999888764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.61  E-value=3.8e-15  Score=131.87  Aligned_cols=95  Identities=14%  Similarity=0.300  Sum_probs=80.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecc-hh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKL-IF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~-vl  262 (359)
                      +++..+|||||||+|.++..+++.   .+++++|+ +.+++.+++     ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  107 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL  107 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence            345689999999999999999887   69999999 788877654     4679999999987 554 499999986 99


Q ss_pred             ccC-ChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          263 HDY-DDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       263 h~~-~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      |++ +.++..++|++++++|+|   ||++++
T Consensus       108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~  135 (243)
T 3d2l_A          108 NYLQTEADVKQTFDSAARLLTD---GGKLLF  135 (243)
T ss_dssp             GGCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence            888 556677899999999999   888876

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.61  E-value=9.2e-16  Score=134.18  Aligned_cols=153  Identities=12%  Similarity=0.129  Sum_probs=110.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC----CC--CC-c
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ----SI--PS-A  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~----~~--~~-~  253 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++..++.++.+|+.+    +.  .. |
T Consensus        42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f  117 (227)
T 3e8s_A           42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY  117 (227)
T ss_dssp             HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred             HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCc
Confidence            34555554  455699999999999999999987  568999999 7888888776888888888764    11  23 9


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh------cCCcccC
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC------VPGIERS  327 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~t  327 (359)
                      |+|++..++| ..+.  .++|+++++.|+|   ||++++.++......... +  ............      .....++
T Consensus       118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  188 (227)
T 3e8s_A          118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-Y--QDGWREESFAGFAGDWQPMPWYFRT  188 (227)
T ss_dssp             EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-C--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred             cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-c--ccccchhhhhccccCcccceEEEec
Confidence            9999999999 5554  4789999999999   999999887654432211 0  000000000000      1123469


Q ss_pred             HHHHHHHHHhcCCceeeEEe
Q 043623          328 EKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~  347 (359)
                      .++|.++|+++||+++++..
T Consensus       189 ~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          189 LASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHHHHHHHTTEEEEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEEec
Confidence            99999999999999999875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.60  E-value=2.6e-15  Score=133.35  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=109.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC-------CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP-------SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~-------~~D~i~~~  259 (359)
                      ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++   ..+++++.+|+.+ +.+       .||+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            45678999999999999999999987  8999999 778877654   4589999999998 322       28999999


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHH----HHhhhhhhhhcCCcccCHHHHHHHH
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK----LLYDALMMTCVPGIERSEKEWERLF  335 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~t~~e~~~ll  335 (359)
                      .++|++++++..++|++++++|+|   ||+++|.+...++...........    ......+........++.+++.++|
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF  208 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence            999999987788999999999999   999999998654321000000000    0000000001111236899999999


Q ss_pred             HhcCCceeeEEec
Q 043623          336 FDAGFTSYKITPL  348 (359)
Q Consensus       336 ~~aGf~~~~~~~~  348 (359)
                        +||++++...+
T Consensus       209 --aGf~~~~~~~~  219 (245)
T 3ggd_A          209 --PDFEILSQGEG  219 (245)
T ss_dssp             --TTEEEEEEECC
T ss_pred             --CCCEEEecccc
Confidence              99999886443

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.59  E-value=7.9e-15  Score=131.40  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=104.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     ..+++++.+|+.+ +++  .||+|++.+++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            567789999999999999999987  568999999 777766543     4789999999987 654  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-hhc---CCcccCHHHHHHHHHhc
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-TCV---PGIERSEKEWERLFFDA  338 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~g~~~t~~e~~~ll~~a  338 (359)
                      |++++.  .++|++++++|+|   ||.+++. ...++  .............+... ...   ....++.++|.++|+++
T Consensus       115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (263)
T 2yqz_A          115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL  186 (263)
T ss_dssp             GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred             hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence            999874  4789999999999   8998887 22221  11100000111111100 000   12346789999999999


Q ss_pred             CCceeeEE
Q 043623          339 GFTSYKIT  346 (359)
Q Consensus       339 Gf~~~~~~  346 (359)
                      ||+++.+.
T Consensus       187 Gf~~~~~~  194 (263)
T 2yqz_A          187 GLKPRTRE  194 (263)
T ss_dssp             TCCCEEEE
T ss_pred             CCCcceEE
Confidence            99977653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.58  E-value=7.9e-15  Score=131.37  Aligned_cols=99  Identities=13%  Similarity=0.213  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE  268 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~  268 (359)
                      ....+|||||||+|.++..+++.+  .+++++|+ +.+++.+++..+|+++.+|+.+ +++  .||+|++..++|+++.+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~  115 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD  115 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence            456799999999999999999875  47999999 8899999988999999999998 776  39999999999887643


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                         +++++++++|||   ||.|+++....+.
T Consensus       116 ---~~~~e~~rvLkp---gG~l~~~~~~~~~  140 (257)
T 4hg2_A          116 ---RFWAELRRVARP---GAVFAAVTYGLTR  140 (257)
T ss_dssp             ---HHHHHHHHHEEE---EEEEEEEEECCCB
T ss_pred             ---HHHHHHHHHcCC---CCEEEEEECCCCC
Confidence               679999999999   9999988765443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.57  E-value=1.3e-14  Score=126.79  Aligned_cols=136  Identities=18%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChhH
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEV  269 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~  269 (359)
                      ++.+|||||||+|.++..+++.      +++|. +.+++.+++. +++++.+|+.+ +++  .||+|++.+++|++++. 
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-  118 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-  118 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence            3789999999999999988764      89998 7788777654 79999999887 554  49999999999999875 


Q ss_pred             HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh--hcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623          270 CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT--CVPGIERSEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       270 ~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~  347 (359)
                       .++|++++++|+|   ||.+++.++.....     .  ...........  ......++.++|.++|+++||+++++..
T Consensus       119 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          119 -ERALKEAYRILKK---GGYLIVGIVDRESF-----L--GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             -HHHHHHHHHHEEE---EEEEEEEEECSSSH-----H--HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             -HHHHHHHHHHcCC---CcEEEEEEeCCccH-----H--HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence             4789999999999   89999887643211     1  11111110000  1124557999999999999999998875


Q ss_pred             c
Q 043623          348 L  348 (359)
Q Consensus       348 ~  348 (359)
                      .
T Consensus       188 ~  188 (219)
T 1vlm_A          188 T  188 (219)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.57  E-value=2.7e-14  Score=124.27  Aligned_cols=131  Identities=14%  Similarity=0.172  Sum_probs=101.8

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEec
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFK  259 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~  259 (359)
                      .++..+.. ..+..+|||||||+|.++..++     .+++++|+.+.        +++++.+|+.+ +++  .||+|++.
T Consensus        57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence            45554431 3466899999999999998873     58999998433        68899999988 554  49999999


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      .++|+ .+  ...+|++++++|+|   ||++++.+....                          ..+.++|.++|+++|
T Consensus       123 ~~l~~-~~--~~~~l~~~~~~L~~---gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~~G  170 (215)
T 2zfu_A          123 LSLMG-TN--IRDFLEEANRVLKP---GGLLKVAEVSSR--------------------------FEDVRTFLRAVTKLG  170 (215)
T ss_dssp             SCCCS-SC--HHHHHHHHHHHEEE---EEEEEEEECGGG--------------------------CSCHHHHHHHHHHTT
T ss_pred             hhccc-cC--HHHHHHHHHHhCCC---CeEEEEEEcCCC--------------------------CCCHHHHHHHHHHCC
Confidence            99984 44  45889999999999   999999875321                          117899999999999


Q ss_pred             CceeeEEecCCcceEEEEEC
Q 043623          340 FTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       340 f~~~~~~~~~~~~~~i~~~~  359 (359)
                      |+++++....+...+++++|
T Consensus       171 f~~~~~~~~~~~~~~~~~~k  190 (215)
T 2zfu_A          171 FKIVSKDLTNSHFFLFDFQK  190 (215)
T ss_dssp             EEEEEEECCSTTCEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEEe
Confidence            99988766666666676654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.56  E-value=3.4e-14  Score=124.34  Aligned_cols=152  Identities=16%  Similarity=0.223  Sum_probs=109.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADA  255 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~  255 (359)
                      ..+++.++   .++.+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+   +++  .||+
T Consensus        23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~   96 (230)
T 3cc8_A           23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDC   96 (230)
T ss_dssp             HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEE
T ss_pred             HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCE
Confidence            45555443   46789999999999999999998 4 79999999 7787776642 24788899875   333  4999


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh------hhcCCcccCHH
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM------TCVPGIERSEK  329 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~t~~  329 (359)
                      |++.+++|++++.  .++|+++++.|+|   ||.+++..+.....   .  .........+..      .......++.+
T Consensus        97 v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (230)
T 3cc8_A           97 VIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSHI---S--VLAPLLAGNWTYTEYGLLDKTHIRFFTFN  166 (230)
T ss_dssp             EEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTSH---H--HHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred             EEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcchH---H--HHHHHhcCCceeccCCCCCcceEEEecHH
Confidence            9999999999876  4789999999999   89999877543211   0  000000000000      00122457999


Q ss_pred             HHHHHHHhcCCceeeEEecC
Q 043623          330 EWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~~~  349 (359)
                      +|.++|+++||+++++....
T Consensus       167 ~~~~~l~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          167 EMLRMFLKAGYSISKVDRVY  186 (230)
T ss_dssp             HHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHcCCeEEEEEecc
Confidence            99999999999999887753

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.55  E-value=1.9e-14  Score=128.63  Aligned_cols=133  Identities=8%  Similarity=-0.014  Sum_probs=103.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCceEEeCCCCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------------------TDNLKFIAGDMNQ  248 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------------------~~rv~~~~~d~~~  248 (359)
                      .++.+|||+|||+|..+..|++.  +.+++++|+ +.+++.+++                       ..+|+++.+|+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            46789999999999999999987  568999999 778776532                       2679999999998


Q ss_pred             -CC---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623          249 -SI---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI  324 (359)
Q Consensus       249 -~~---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (359)
                       +.   ..||+|++..+||++++++..+++++++++|||   ||+++++....+.....                 ....
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~  204 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF  204 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence             43   359999999999999988888899999999999   99987665543321100                 0011


Q ss_pred             ccCHHHHHHHHHhcCCceeeEEec
Q 043623          325 ERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       325 ~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      ..+.+++.++|++ +|++..+...
T Consensus       205 ~~~~~el~~~l~~-~f~v~~~~~~  227 (252)
T 2gb4_A          205 YVPSAELKRLFGT-KCSMQCLEEV  227 (252)
T ss_dssp             CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             CCCHHHHHHHhhC-CeEEEEEecc
Confidence            2489999999987 5998776543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.55  E-value=4.5e-15  Score=128.41  Aligned_cols=151  Identities=11%  Similarity=-0.000  Sum_probs=108.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      ..++.+|||||||+|.++..++.. ++.+++++|. +.+++.+++     ..+++++.+|+.+ +++  .||+|++.+++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            456789999999999986555544 5679999999 778877654     4689999999988 654  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh-hhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL-MMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      ||++.++..+++++++++|+|   ||.+++.+...++.............+... .........++.+++.++|+++||.
T Consensus       100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  176 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL  176 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence            999877788999999999999   999999888765543211000000001000 0000123567999999999999997


Q ss_pred             eeeEE
Q 043623          342 SYKIT  346 (359)
Q Consensus       342 ~~~~~  346 (359)
                      ..+..
T Consensus       177 ~~~~~  181 (209)
T 2p8j_A          177 FKEDR  181 (209)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            76543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.4e-14  Score=131.18  Aligned_cols=140  Identities=15%  Similarity=0.142  Sum_probs=101.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC-CC--------CCc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ-SI--------PSA  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~-~~--------~~~  253 (359)
                      .++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++        ..+++++.+|+.+ ++        ..|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999987 8899999999 778877653        5799999999988 42        249


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh--hcCCc--ccCHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT--CVPGI--ERSEK  329 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~--~~t~~  329 (359)
                      |+|++..++|++ +  ..++|+++++.|+|   ||.+++.+...+.....+..   ...+.-....  ..+..  ....+
T Consensus       115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~p~~~  185 (299)
T 3g5t_A          115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYPEF---DDLMIEVPYGKQGLGPYWEQPGRS  185 (299)
T ss_dssp             EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCGGG---TTHHHHHHHCTTTTGGGSCTTHHH
T ss_pred             eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcHHH---HHHHHHhccCcccccchhhchhhH
Confidence            999999999999 4  45889999999999   99999855443222111100   0111111110  01111  13567


Q ss_pred             HHHHHHHhcCCc
Q 043623          330 EWERLFFDAGFT  341 (359)
Q Consensus       330 e~~~ll~~aGf~  341 (359)
                      .+.++++++||.
T Consensus       186 ~~~~~l~~~gfp  197 (299)
T 3g5t_A          186 RLRNMLKDSHLD  197 (299)
T ss_dssp             HHHTTTTTCCCC
T ss_pred             HHHHhhhccCCC
Confidence            789999999993

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.54  E-value=2.6e-14  Score=130.53  Aligned_cols=140  Identities=16%  Similarity=0.153  Sum_probs=95.6

Q ss_pred             CCCeEEEEcCCchHHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCceE--EeCCCCC-C------C
Q 043623          194 GLSSLVEVGGGTGSFAR----IISEAFPSIKC--SVLEL-PHVIADLPE-------TDNLKF--IAGDMNQ-S------I  250 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~i~~a~~-------~~rv~~--~~~d~~~-~------~  250 (359)
                      ++.+|||||||+|.++.    .++.++|+.++  +++|. +++++.+++       ..++.+  ..++..+ +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            45799999999997655    44556788854  99998 788876543       134544  4555433 2      2


Q ss_pred             C--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh--cCCccc
Q 043623          251 P--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC--VPGIER  326 (359)
Q Consensus       251 ~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~  326 (359)
                      +  .||+|++.++||+++|..  +.|++++++|||   ||++++......    . ..  ...+....-...  .....+
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~----~-~~--~~~~~~~~~~~~~~~~~~~~  199 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSGS----S-GW--DKLWKKYGSRFPQDDLCQYI  199 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECTT----S-HH--HHHHHHHGGGSCCCTTCCCC
T ss_pred             CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEecCC----c-cH--HHHHHHHHHhccCCCcccCC
Confidence            2  499999999999999864  679999999999   999999865321    1 01  111111110000  012457


Q ss_pred             CHHHHHHHHHhcCCceeeE
Q 043623          327 SEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~  345 (359)
                      +.++|.++|+++||+++..
T Consensus       200 ~~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          200 TSDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             CHHHHHHHHHHHTCCEEEE
T ss_pred             CHHHHHHHHHHCCCceEEE
Confidence            8999999999999998764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.54  E-value=4e-14  Score=128.77  Aligned_cols=141  Identities=18%  Similarity=0.203  Sum_probs=109.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~  253 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     ..+++++.+|+.+ +.+ .|
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  185 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY  185 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence            45555555  446789999999999999999998  569999999 778776654     2389999999988 444 49


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..++|+++++....+|+++++.|+|   ||.++++.....+....+               ......++.+++.+
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~  247 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE  247 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence            999999999999988888999999999999   999888766544432211               01123357888999


Q ss_pred             HHHhcCCceeeEE
Q 043623          334 LFFDAGFTSYKIT  346 (359)
Q Consensus       334 ll~~aGf~~~~~~  346 (359)
                      +++.  |.++...
T Consensus       248 ~~~~--~~~~~~~  258 (286)
T 3m70_A          248 YYKD--WEFLEYN  258 (286)
T ss_dssp             HTTT--SEEEEEE
T ss_pred             HhcC--CEEEEEE
Confidence            9865  8887764

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.53  E-value=9.9e-15  Score=130.91  Aligned_cols=140  Identities=14%  Similarity=0.143  Sum_probs=103.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CC------------------------------
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TD------------------------------  237 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~------------------------------  237 (359)
                      .++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++    ..                              
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4567999999999999999988765 58999999 777776643    11                              


Q ss_pred             -Cc-eEEeCCCCC-CC------CCccEEEecchhccCCh--hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchH
Q 043623          238 -NL-KFIAGDMNQ-SI------PSADAFLFKLIFHDYDD--EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI  306 (359)
Q Consensus       238 -rv-~~~~~d~~~-~~------~~~D~i~~~~vlh~~~d--~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~  306 (359)
                       ++ +++.+|+.+ +.      ..||+|++..+||+.++  ++..++|++++++|+|   ||++++.+......      
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~------  204 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY------  204 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE------
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce------
Confidence             27 899999987 22      24999999999995433  2567899999999999   99999888532210      


Q ss_pred             HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623          307 TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       307 ~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                            +... .........+.++|.++|+++||+++++...+
T Consensus       205 ------~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          205 ------YMIG-EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             ------EEET-TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ------EEcC-CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence                  0000 00011234589999999999999999887654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.51  E-value=3.1e-13  Score=113.38  Aligned_cols=127  Identities=13%  Similarity=0.171  Sum_probs=101.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC--CccEEEecchhccCChh-
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDDE-  268 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~~~d~-  268 (359)
                      .++.+|||+|||+|.++..+++..   +++++|+ +.+++.   .++++++.+|+.++.+  .||+|+++..+|..++. 
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~   95 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP   95 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence            456799999999999999999986   9999999 778887   5789999999998554  49999999888865544 


Q ss_pred             ------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          269 ------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       269 ------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                            +...+++++.+.+ |   ||++++.....                            .+.+++.++++++||+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~  143 (170)
T 3q87_B           96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT  143 (170)
T ss_dssp             TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred             cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence                  3457889999999 8   89999877421                            15778899999999999


Q ss_pred             eeEEec-CCcceEEEE
Q 043623          343 YKITPL-LGLRSFIEV  357 (359)
Q Consensus       343 ~~~~~~-~~~~~~i~~  357 (359)
                      ..+... .+...++..
T Consensus       144 ~~~~~~~~~~e~~~~~  159 (170)
T 3q87_B          144 RILKVRKILGETVYII  159 (170)
T ss_dssp             EEEEEEECSSSEEEEE
T ss_pred             EEEEeeccCCceEEEE
Confidence            888776 344444443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.51  E-value=5.5e-14  Score=128.25  Aligned_cols=153  Identities=12%  Similarity=0.001  Sum_probs=108.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC-C--CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI-P--SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~-~--~~D~i~~~  259 (359)
                      +.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++       ..+++++.+|+.+ ++ +  .||+|++.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            356789999999999999998876 4569999999 778776653       2578999999998 55 2  49999999


Q ss_pred             chhcc--CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC-------CCch-----------HHH-HHHHhhhhhh
Q 043623          260 LIFHD--YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK-------DKPE-----------ITE-AKLLYDALMM  318 (359)
Q Consensus       260 ~vlh~--~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~-------~~~~-----------~~~-~~~~~~~~~~  318 (359)
                      .++|+  .+.++..++|++++++|+|   ||++++..+......       ....           .+. ....+.+.+.
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  217 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL  217 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence            99998  5666778999999999999   999998775432100       0000           000 0000000000


Q ss_pred             h---hcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          319 T---CVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       319 ~---~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      .   ......++.++|.++|+++||+++++..+
T Consensus       218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence            0   01124568999999999999999998765

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.50  E-value=1.7e-13  Score=120.69  Aligned_cols=139  Identities=17%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc----CCCCCCceEEeCCCCC-----CC-CCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD----LPETDNLKFIAGDMNQ-----SI-PSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~----a~~~~rv~~~~~d~~~-----~~-~~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..+++..|..+++++|+ +.+++.    ++..+++.++.+|+.+     +. ..||+|+   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence            55678999999999999999999988789999999 667654    3335789999999876     12 2499998   


Q ss_pred             hhccCChh-HHHHHHHHHHHhcCCCCCCceEEEEeeecCC-CCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          261 IFHDYDDE-VCLKLLKNCREAVASSDGREKVIIVDIVVNE-KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       261 vlh~~~d~-~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                        |+.++. ....+|+++.+.|+|   ||++++. ..... ....+   .. .              ...+++. +|+++
T Consensus       149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---~~-~--------------~~~~~l~-~l~~~  203 (230)
T 1fbn_A          149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKD---PK-E--------------IFKEQKE-ILEAG  203 (230)
T ss_dssp             --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSC---HH-H--------------HHHHHHH-HHHHH
T ss_pred             --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCC---HH-H--------------hhHHHHH-HHHHC
Confidence              555443 345679999999999   8999887 22111 11111   00 0              0247788 99999


Q ss_pred             CCceeeEEecCCc---ceEEEEE
Q 043623          339 GFTSYKITPLLGL---RSFIEVY  358 (359)
Q Consensus       339 Gf~~~~~~~~~~~---~~~i~~~  358 (359)
                      ||+.+++..+..+   +.++.++
T Consensus       204 Gf~~~~~~~~~~~~~~~~~v~~~  226 (230)
T 1fbn_A          204 GFKIVDEVDIEPFEKDHVMFVGI  226 (230)
T ss_dssp             TEEEEEEEECTTTSTTEEEEEEE
T ss_pred             CCEEEEEEccCCCccceEEEEEE
Confidence            9999999888554   5566655

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.49  E-value=1e-14  Score=133.02  Aligned_cols=107  Identities=15%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC-C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ-S  249 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~-~  249 (359)
                      ..+...++  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++          ..++.+..+|+.+ +
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            34444444  4567899999999999999999984  49999999 778877642          3578899999887 5


Q ss_pred             ---CC--CccEEEec-chhccCCh-----hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          250 ---IP--SADAFLFK-LIFHDYDD-----EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       250 ---~~--~~D~i~~~-~vlh~~~d-----~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                         ++  .||+|++. +++||+++     ++..++|++++++|+|   ||++++..+
T Consensus       123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  176 (293)
T 3thr_A          123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR  176 (293)
T ss_dssp             HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence               44  49999998 89999988     6678999999999999   899988754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.49  E-value=2.9e-13  Score=116.80  Aligned_cols=124  Identities=11%  Similarity=0.236  Sum_probs=99.5

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC---CCC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS---IPS  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~---~~~  252 (359)
                      .++..+.  ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++      .++++++.+|+.+.   .+.
T Consensus        31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence            4455555  66788999999999999999999999999999999 788877664      37899999999773   245


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++...++     ...++++++.+.|+|   ||++++......                            +.+++.
T Consensus       109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~~  152 (204)
T 3e05_A          109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKAV  152 (204)
T ss_dssp             CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHHH
T ss_pred             CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHHH
Confidence            99999998876     345789999999999   999988654210                            466788


Q ss_pred             HHHHhcCCceeeE
Q 043623          333 RLFFDAGFTSYKI  345 (359)
Q Consensus       333 ~ll~~aGf~~~~~  345 (359)
                      ++++++|| .+++
T Consensus       153 ~~l~~~g~-~~~~  164 (204)
T 3e05_A          153 EFLEDHGY-MVEV  164 (204)
T ss_dssp             HHHHHTTC-EEEE
T ss_pred             HHHHHCCC-ceeE
Confidence            89999998 4443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.49  E-value=1.1e-13  Score=119.43  Aligned_cols=130  Identities=11%  Similarity=0.084  Sum_probs=104.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC-CCccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI-PSADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~-~~~D~i~~~~vlh  263 (359)
                      ..++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++      ..+++++.+|+.+.. ..||+|++...+|
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence            35678999999999999999876 56679999999 778776654      234999999998843 3599999998776


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      +     ..++++++++.|+|   ||++++.+....                            +.+++.++++++||+.+
T Consensus       137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~  180 (205)
T 3grz_A          137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID  180 (205)
T ss_dssp             H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred             H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence            4     35789999999999   899988655321                            46788999999999999


Q ss_pred             eEEecCCcceEEEEE
Q 043623          344 KITPLLGLRSFIEVY  358 (359)
Q Consensus       344 ~~~~~~~~~~~i~~~  358 (359)
                      ++.......+++.-+
T Consensus       181 ~~~~~~~w~~~~~~~  195 (205)
T 3grz_A          181 LKMRAGRWIGLAISR  195 (205)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EeeccCCEEEEEEec
Confidence            988887777776543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.49  E-value=3.9e-13  Score=119.68  Aligned_cols=97  Identities=19%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEec-chh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFK-LIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~-~vl  262 (359)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     ..+++++.+|+.+ +.+ .||+|++. ..+
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  116 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI  116 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence            356689999999999999999986  568999999 788877653     4479999999988 554 49999987 456


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ++++.++..++|++++++|+|   ||.+++.
T Consensus       117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~  144 (252)
T 1wzn_A          117 MYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (252)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence            777777788999999999999   8887764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.48  E-value=1.1e-14  Score=131.09  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=98.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-------------------------------
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T-------------------------------  236 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~-------------------------------  236 (359)
                      .++.+|||||||+|.++..++.... .+++++|+ +.+++.+++    .                               
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            4567999999999988776555432 26999999 778875542    0                               


Q ss_pred             CCce-EEeCCCCC--CC-----CCccEEEecchhccC-C-hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchH
Q 043623          237 DNLK-FIAGDMNQ--SI-----PSADAFLFKLIFHDY-D-DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI  306 (359)
Q Consensus       237 ~rv~-~~~~d~~~--~~-----~~~D~i~~~~vlh~~-~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~  306 (359)
                      .+|+ ++.+|+.+  ++     +.||+|+++.+||+. + .++..++|++++++|||   ||.+++........ ..   
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~-~~---  205 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPS-YM---  205 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-EE---
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcc-ce---
Confidence            1233 88899887  32     359999999999985 2 35567899999999999   99999986542211 00   


Q ss_pred             HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          307 TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       307 ~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                            ..-   .......++.++|.++|+++||+++++...
T Consensus       206 ------~g~---~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          206 ------VGK---REFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             ------ETT---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ------eCC---eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence                  000   001122358999999999999999988764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.48  E-value=2.2e-13  Score=117.15  Aligned_cols=134  Identities=7%  Similarity=0.049  Sum_probs=101.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh  263 (359)
                      ++. +|||||||+|.++..+++.  +.+++++|. +.+++.+++     ..+++++.+|+.+ +++  .||+|++.  ++
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~  103 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC  103 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence            345 9999999999999999986  569999999 778877664     3489999999988 554  49999985  34


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      +++.++..++|+++++.|+|   ||.+++..+........         ..   ........++.+++.++|+  ||+++
T Consensus       104 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~l~~~l~--Gf~v~  166 (202)
T 2kw5_A          104 HLPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQYN---------TG---GPKDLDLLPKLETLQSELP--SLNWL  166 (202)
T ss_dssp             CCCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGGT---------SC---CSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccCC---------CC---CCCcceeecCHHHHHHHhc--CceEE
Confidence            55766778999999999999   99999988754332100         00   0001123569999999999  99998


Q ss_pred             eEEec
Q 043623          344 KITPL  348 (359)
Q Consensus       344 ~~~~~  348 (359)
                      ++...
T Consensus       167 ~~~~~  171 (202)
T 2kw5_A          167 IANNL  171 (202)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.47  E-value=7.9e-14  Score=133.71  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC------CC--CC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ------SI--PS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~------~~--~~  252 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++. .+......+..      ++  ..
T Consensus        97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred             HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence            45666665  567789999999999999999986  458999999 7788877653 33333322221      22  25


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++.++|||+++.  ..+|++++++|+|   ||++++..+.....       .....++.  ........++.++|.
T Consensus       172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~-------~~~~~~~~--~~~~~~~~~s~~~l~  237 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDI-------VAKTSFDQ--IFDEHFFLFSATSVQ  237 (416)
T ss_dssp             EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHH-------HHHTCGGG--CSTTCCEECCHHHHH
T ss_pred             EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHh-------hhhcchhh--hhhhhhhcCCHHHHH
Confidence            9999999999999875  5789999999999   89888865542110       00001111  101233457999999


Q ss_pred             HHHHhcCCceeeEEecC
Q 043623          333 RLFFDAGFTSYKITPLL  349 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~~  349 (359)
                      ++++++||+++++...+
T Consensus       238 ~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          238 GMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHHHTTEEEEEEEEEC
T ss_pred             HHHHHcCCEEEEEEEcc
Confidence            99999999999998865

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.47  E-value=2e-13  Score=122.03  Aligned_cols=141  Identities=17%  Similarity=0.196  Sum_probs=103.0

Q ss_pred             CCCeEEEEcCCc--hHHHHHH-HHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-C--------CCcc
Q 043623          194 GLSSLVEVGGGT--GSFARII-SEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-I--------PSAD  254 (359)
Q Consensus       194 ~~~~vlDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-~--------~~~D  254 (359)
                      +..+|||||||+  +.++..+ .+..|+.+++++|. |.|++.++.      ..+++|+.+|+.++ .        ..||
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            557999999997  4444554 44689999999999 899998874      24799999999872 1        1255


Q ss_pred             -----EEEecchhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCH
Q 043623          255 -----AFLFKLIFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSE  328 (359)
Q Consensus       255 -----~i~~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~  328 (359)
                           +++++.+||++++++ ...+|++++++|+|   ||.|++.+...+...  .   ........+.........|+.
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p--~---~~~~~~~~~~~~g~p~~~rs~  229 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAP--Q---EVGRVAREYAARNMPMRLRTH  229 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSH--H---HHHHHHHHHHHTTCCCCCCCH
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCH--H---HHHHHHHHHHhcCCCCccCCH
Confidence                 688999999999876 46899999999999   999999887654221  0   111122222222234567899


Q ss_pred             HHHHHHHHhcCCceee
Q 043623          329 KEWERLFFDAGFTSYK  344 (359)
Q Consensus       329 ~e~~~ll~~aGf~~~~  344 (359)
                      +|+.++|.  ||..++
T Consensus       230 ~ei~~~f~--Glelve  243 (277)
T 3giw_A          230 AEAEEFFE--GLELVE  243 (277)
T ss_dssp             HHHHHTTT--TSEECT
T ss_pred             HHHHHHhC--CCcccC
Confidence            99999995  999765

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.46  E-value=2.1e-13  Score=118.10  Aligned_cols=128  Identities=16%  Similarity=0.118  Sum_probs=96.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSI-KCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYD  266 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~  266 (359)
                      .++.+|||||||+|.++..+     +. +++++|+ +.+++.+++ ..+++++.+|+.+ +++  .||+|++.+++|+++
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  109 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE  109 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred             CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence            36789999999999999887     45 8999999 778877664 4789999999988 655  499999999999998


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh---hhcCCcccCHHHHHHHHHhcC
Q 043623          267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM---TCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      +.  .++|+++++.|+|   ||++++..+.....     .  ..........   .....+.++.+++.++|+  |
T Consensus       110 ~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          110 DV--ERVLLEARRVLRP---GGALVVGVLEALSP-----W--AALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             CH--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----H--HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             CH--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----H--HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            75  4789999999999   99999987753221     0  0000100000   011345679999999999  7

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.46  E-value=1.4e-13  Score=120.07  Aligned_cols=150  Identities=11%  Similarity=0.093  Sum_probs=98.1

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCceEEeCCCCC-CC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD----LPE------TDNLKFIAGDMNQ-SI  250 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~----a~~------~~rv~~~~~d~~~-~~  250 (359)
                      ..+..+.  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.    +++      .++++++.+|+.+ ++
T Consensus        18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~   95 (218)
T 3mq2_A           18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP   95 (218)
T ss_dssp             HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred             HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence            3344444  56678999999999999999999999999999999 665553    221      4589999999998 55


Q ss_pred             CC-ccEEE---ecchhc--cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623          251 PS-ADAFL---FKLIFH--DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI  324 (359)
Q Consensus       251 ~~-~D~i~---~~~vlh--~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (359)
                      +. .|.|.   ....+|  +.++.  .++|++++++|||   ||++++.-.........+   .   .....    ....
T Consensus        96 ~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~----~~~~  160 (218)
T 3mq2_A           96 LSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSVP---E---VGEHP----EPTP  160 (218)
T ss_dssp             CCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBCG---G---GTTCC----CCCH
T ss_pred             CCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEecccccccccc---c---cccCC----ccch
Confidence            41 25544   223332  44544  4789999999999   898888432211111000   0   00000    0011


Q ss_pred             ccCHHHHHHHHHhcCCceeeEEecC
Q 043623          325 ERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       325 ~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      .+..+++.++++++||++.++..+.
T Consensus       161 ~~~~~~l~~~l~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          161 DSADEWLAPRYAEAGWKLADCRYLE  185 (218)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCceeeeccc
Confidence            1234568889999999998886653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.44  E-value=9.8e-14  Score=126.43  Aligned_cols=138  Identities=11%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C------------C---------------------
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--T------------D---------------------  237 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~------------~---------------------  237 (359)
                      ++.+|||||||+|.++ .++...+..+++++|+ +.+++.+++  .            .                     
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            5689999999999944 3444445569999999 778765542  0            0                     


Q ss_pred             -CceEEeCCCCC--C-----CCC--ccEEEecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch
Q 043623          238 -NLKFIAGDMNQ--S-----IPS--ADAFLFKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE  305 (359)
Q Consensus       238 -rv~~~~~d~~~--~-----~~~--~D~i~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~  305 (359)
                       .++++.+|+.+  +     +++  ||+|+++.+||+.++.  +..++|++++++|||   ||++++.+...... ..  
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~-~~--  223 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESW-YL--  223 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCE-EE--
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcce-EE--
Confidence             13466668876  2     222  9999999999985433  567899999999999   99999986432110 00  


Q ss_pred             HHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       306 ~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                            ..+    .......++.++|.++|+++||+++++...
T Consensus       224 ------~~~----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          224 ------AGE----ARLTVVPVSEEEVREALVRSGYKVRDLRTY  256 (289)
T ss_dssp             ------ETT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ------cCC----eeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence                  000    001123468999999999999999887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.43  E-value=1.5e-12  Score=117.79  Aligned_cols=135  Identities=11%  Similarity=0.138  Sum_probs=105.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC--CCccEEEecc---
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI--PSADAFLFKL---  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~--~~~D~i~~~~---  260 (359)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..+++++.+|++++.  ..||+|+++.   
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence            3567999999999999999999999999999999 778776654      247999999998844  3599999983   


Q ss_pred             ----------hhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623          261 ----------IFHDYDD----------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC  320 (359)
Q Consensus       261 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (359)
                                ++++.+.          ....++++++.+.|+|   ||.+++...       .                 
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~-------~-----------------  240 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG-------W-----------------  240 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------S-----------------
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------c-----------------
Confidence                      4443331          3346889999999999   888777411       0                 


Q ss_pred             cCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEEEEC
Q 043623          321 VPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIEVYL  359 (359)
Q Consensus       321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~  359 (359)
                           .+.+++.++++++||+.+++.. ..+...++.+++
T Consensus       241 -----~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          241 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             -----hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence                 1577889999999999888765 466677777764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.42  E-value=2e-13  Score=119.87  Aligned_cols=146  Identities=9%  Similarity=0.048  Sum_probs=91.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-H-HHhcC---CC------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-H-VIADL---PE------TDNLKFIAGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-~i~~a---~~------~~rv~~~~~d~~~-~~~~~D~i~~~~  260 (359)
                      .++.+|||||||+|.++..++++.|+.+++++|+. + +++.|   ++      ..++.++.+|+.+ +...+|.|.+..
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            46679999999999999999998999999999993 4 44433   43      3579999999887 322245554444


Q ss_pred             hhccCChhH------HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623          261 IFHDYDDEV------CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL  334 (359)
Q Consensus       261 vlh~~~d~~------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l  334 (359)
                      +.+.|+...      ...+|++++++|||   ||++++...........+ .    .......   ........+++.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~el~~~  171 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDSYEEAE-I----KKRGLPL---LSKAYFLSEQYKAE  171 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEeccccchhch-h----hhcCCCC---CChhhcchHHHHHH
Confidence            433333210      13579999999999   999988443333211000 0    0000000   00000122359999


Q ss_pred             HHhcCCceeeEEecC
Q 043623          335 FFDAGFTSYKITPLL  349 (359)
Q Consensus       335 l~~aGf~~~~~~~~~  349 (359)
                      ++++||++.++...+
T Consensus       172 l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          172 LSNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             HHHcCCCeeeeeecC
Confidence            999999998877654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.42  E-value=3.2e-13  Score=117.44  Aligned_cols=100  Identities=16%  Similarity=0.242  Sum_probs=83.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD  264 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~  264 (359)
                      ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++    ..+++++.+|+.+ +.+ .||+|++.+++|+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            4456899999999999999999885  48999999 777776553    4689999999998 422 4999999999999


Q ss_pred             CCh-hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          265 YDD-EVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       265 ~~d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +++ +...++|+++++.|+|   ||.+++..+.
T Consensus       127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~  156 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR  156 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence            986 4556899999999999   8998887653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.40  E-value=1.8e-12  Score=110.05  Aligned_cols=141  Identities=12%  Similarity=0.258  Sum_probs=106.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CceEEeCCCCCCCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TD--NLKFIAGDMNQSIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~--rv~~~~~d~~~~~~-  251 (359)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      ..  +++++.+|+.+..+ 
T Consensus        42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  117 (194)
T 1dus_A           42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence            44555555  557789999999999999999988  679999999 777776653      23  49999999988433 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                       .||+|++...+|+ ..+...++++++.+.|+|   ||.+++......                            ...+
T Consensus       118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~  165 (194)
T 1dus_A          118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKS  165 (194)
T ss_dssp             SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHH
T ss_pred             CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHH
Confidence             4999999888764 345567899999999999   899988776320                            1235


Q ss_pred             HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          331 WERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +.+.+++. |..+++......+.++.++|
T Consensus       166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence            66777777 66677777666666666654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.40  E-value=5.5e-13  Score=125.06  Aligned_cols=113  Identities=11%  Similarity=0.057  Sum_probs=90.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCceEEeCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------------TDNLKFIAGD  245 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------------~~rv~~~~~d  245 (359)
                      ..++..+.  +.++.+|||||||+|.++..++...+..+++|+|+ +.+++.|++               .++|+|+.+|
T Consensus       163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            34555555  67889999999999999999999887667999999 666554432               3789999999


Q ss_pred             CCC-CC----CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC
Q 043623          246 MNQ-SI----PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD  302 (359)
Q Consensus       246 ~~~-~~----~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~  302 (359)
                      +++ ++    ..||+|+++++++ +  ++..+.|+++++.|||   ||+|++.|.+.++...
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~~  296 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNFR  296 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTCC
T ss_pred             ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCCC
Confidence            998 55    3599999988764 3  3456778999999999   9999999999887653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.40  E-value=3e-12  Score=111.13  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCceEEeCCCCCC-----CC-CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVI----ADLPETDNLKFIAGDMNQS-----IP-SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i----~~a~~~~rv~~~~~d~~~~-----~~-~~D~i~~~~  260 (359)
                      ..++.+|||||||+|.++..+++..++.+++++|+ +.++    +.++...++.++.+|+..+     ++ .||+|++. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence            45678999999999999999999988779999999 6543    4444356899999998762     22 49999987 


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH----HHHHH
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW----ERLFF  336 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~----~~ll~  336 (359)
                      +.+   .++...+++++++.|||   ||++++.-...+....                       .+.+++    .+.++
T Consensus       134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~  184 (210)
T 1nt2_A          134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARSIDST-----------------------AEPEEVFKSVLKEME  184 (210)
T ss_dssp             CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHHCTT-----------------------SCHHHHHHHHHHHHH
T ss_pred             ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCCcccc-----------------------CCHHHHHHHHHHHHH
Confidence            322   23344569999999999   9999887322110000                       022222    12388


Q ss_pred             hcCCceeeEEecCC---cceEEEEEC
Q 043623          337 DAGFTSYKITPLLG---LRSFIEVYL  359 (359)
Q Consensus       337 ~aGf~~~~~~~~~~---~~~~i~~~~  359 (359)
                      ++ |++.+......   .+.++.+++
T Consensus       185 ~~-f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          185 GD-FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence            88 99999988733   456666653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.40  E-value=2.2e-13  Score=117.94  Aligned_cols=135  Identities=17%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC--C-----CCccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS--I-----PSADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~--~-----~~~D~i~~~  259 (359)
                      .++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ..+++++.+|+.++  .     ..||+|+++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence            5678999999999999999999999999999999 788888775     11788999998873  2     459999996


Q ss_pred             chhc------cCChhHH------------------HHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh
Q 043623          260 LIFH------DYDDEVC------------------LKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA  315 (359)
Q Consensus       260 ~vlh------~~~d~~~------------------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~  315 (359)
                      ..++      +++++..                  .++++++++.|+|   ||++++++...                  
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------  167 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------  167 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence            4443      3322222                  6789999999999   99966655421                  


Q ss_pred             hhhhhcCCcccCHHHHHHHHH--hcCCceeeEEecC-CcceEEEEE
Q 043623          316 LMMTCVPGIERSEKEWERLFF--DAGFTSYKITPLL-GLRSFIEVY  358 (359)
Q Consensus       316 ~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~~i~~~  358 (359)
                                ...+++.++++  ++||..+++.... +...++.++
T Consensus       168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~  203 (215)
T 4dzr_A          168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT  203 (215)
T ss_dssp             ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred             ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence                      14567788888  9999988887763 445565554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.39  E-value=7.8e-13  Score=111.13  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=93.7

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI--  250 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~--  250 (359)
                      .++..+.  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++       .+++ ++.+|..+  +.  
T Consensus        16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~   92 (178)
T 3hm2_A           16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP   92 (178)
T ss_dssp             HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred             HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence            3444444  56678999999999999999999999999999999 777776653       3378 88888866  32  


Q ss_pred             CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          251 PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       251 ~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                      +.||+|++..++|+      .++++++.+.|+|   ||++++.....+                            +...
T Consensus        93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~  135 (178)
T 3hm2_A           93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTVE----------------------------SEQM  135 (178)
T ss_dssp             SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSHH----------------------------HHHH
T ss_pred             CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeeccc----------------------------cHHH
Confidence            45999999999987      3679999999999   999988765321                            2445


Q ss_pred             HHHHHHhcCCceeeE
Q 043623          331 WERLFFDAGFTSYKI  345 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~  345 (359)
                      +.+++++.|+...++
T Consensus       136 ~~~~~~~~~~~~~~~  150 (178)
T 3hm2_A          136 LWALRKQFGGTISSF  150 (178)
T ss_dssp             HHHHHHHHCCEEEEE
T ss_pred             HHHHHHHcCCeeEEE
Confidence            567777777766554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.39  E-value=1.1e-12  Score=114.85  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=98.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcC----CCCCCceEEeCCCCCC--CC----CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADL----PETDNLKFIAGDMNQS--IP----SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a----~~~~rv~~~~~d~~~~--~~----~~D~i~~~  259 (359)
                      ++++.+|||+|||+|.++..+++. .|+-+++++|+ +++++.+    ++..++..+.+|..++  .+    .+|+|++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            688999999999999999999987 58899999999 7777654    3467899999988762  11    38988753


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                        +++..  +...+++++++.|||   ||+++|...........+                   .....++-.+.|+++|
T Consensus       155 --~~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p-------------------~~~~~~~ev~~L~~~G  208 (233)
T 4df3_A          155 --VAQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTTE-------------------PSEVYKREIKTLMDGG  208 (233)
T ss_dssp             --CCCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTC-------------------CCHHHHHHHHHHHHTT
T ss_pred             --ccCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCCC-------------------hHHHHHHHHHHHHHCC
Confidence              22222  245789999999999   999988653221111000                   0001234456788999


Q ss_pred             CceeeEEecCCc---ceEEEE
Q 043623          340 FTSYKITPLLGL---RSFIEV  357 (359)
Q Consensus       340 f~~~~~~~~~~~---~~~i~~  357 (359)
                      |+..+...+..+   +.++.+
T Consensus       209 F~l~e~i~L~pf~~~H~lv~~  229 (233)
T 4df3_A          209 LEIKDVVHLDPFDRDHAMIYA  229 (233)
T ss_dssp             CCEEEEEECTTTSTTEEEEEE
T ss_pred             CEEEEEEccCCCCCceEEEEE
Confidence            999999888543   455554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.38  E-value=6.5e-14  Score=123.96  Aligned_cols=133  Identities=17%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEEe---
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFLF---  258 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~~---  258 (359)
                      .++.+|||||||+|..+..+++..|. +++++|+ |.+++.+++     ..+++++.+|..+   +++  .||.|++   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            56789999999999999999988775 8999999 888887764     5678888888654   333  3888864   


Q ss_pred             --cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHH
Q 043623          259 --KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFF  336 (359)
Q Consensus       259 --~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~  336 (359)
                        ...++++.+  ...++++++++|||   ||++++.+.........       ..++       .-.....+.+...|.
T Consensus       138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~L~  198 (236)
T 3orh_A          138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKYS-------DITIMFEETQVPALL  198 (236)
T ss_dssp             CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTCS-------CHHHHHHHHTHHHHH
T ss_pred             ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEecCCchhhhh-------hhhh-------hhhhhhHHHHHHHHH
Confidence              445555555  45789999999999   89887754321100000       0000       000012456777888


Q ss_pred             hcCCceeeE
Q 043623          337 DAGFTSYKI  345 (359)
Q Consensus       337 ~aGf~~~~~  345 (359)
                      ++||++..+
T Consensus       199 eaGF~~~~i  207 (236)
T 3orh_A          199 EAGFRRENI  207 (236)
T ss_dssp             HHTCCGGGE
T ss_pred             HcCCeEEEE
Confidence            999997665

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=114.71  Aligned_cols=140  Identities=11%  Similarity=0.105  Sum_probs=96.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHH----HhcCCCCCCceEEeCCCCCC--C----CCccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHV----IADLPETDNLKFIAGDMNQS--I----PSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----i~~a~~~~rv~~~~~d~~~~--~----~~~D~i~~~  259 (359)
                      +.++.+|||+|||+|.++..+++.. |+.+++++|+ +.+    ++.++...+++++.+|+.++  .    ..||+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5667899999999999999999986 7789999999 554    44444358899999999872  2    249999985


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC-CCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE-KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA  338 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a  338 (359)
                      ..    ..+....++.++++.|+|   ||.+++. ..... ....+   .. ..              -..+ .++|+++
T Consensus       155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---~~-~~--------------~~~~-~~~l~~~  207 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDSTAS---AE-AV--------------FASE-VKKMQQE  207 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSSSC---HH-HH--------------HHHH-HHTTGGG
T ss_pred             CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccCCC---HH-HH--------------HHHH-HHHHHHC
Confidence            43    233345678999999999   8888883 32210 11111   00 00              0123 5889999


Q ss_pred             CCceeeEEecCCc---ceEEEEE
Q 043623          339 GFTSYKITPLLGL---RSFIEVY  358 (359)
Q Consensus       339 Gf~~~~~~~~~~~---~~~i~~~  358 (359)
                      ||+++++..+..+   +.++.++
T Consensus       208 Gf~~~~~~~~~~~~~~~~~v~~~  230 (233)
T 2ipx_A          208 NMKPQEQLTLEPYERDHAVVVGV  230 (233)
T ss_dssp             TEEEEEEEECTTTSSSEEEEEEE
T ss_pred             CCceEEEEecCCccCCcEEEEEE
Confidence            9999997776433   5555544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.37  E-value=3e-12  Score=128.66  Aligned_cols=101  Identities=12%  Similarity=0.154  Sum_probs=86.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCceEEeCCCCC-CCC--Ccc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------------TDNLKFIAGDMNQ-SIP--SAD  254 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------------~~rv~~~~~d~~~-~~~--~~D  254 (359)
                      ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++            ..+|+++.+|+.+ +.+  .||
T Consensus       719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence            3467899999999999999999998 5679999999 778776643            3579999999998 554  499


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +|++..++||++++....+++++++.|+|   | .++|..+.
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN  836 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN  836 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence            99999999999998888899999999999   6 66666554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=113.03  Aligned_cols=101  Identities=13%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh  263 (359)
                      +.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++    .++++++.+|+.+ +++  .||+|++..++|
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            456789999999999999999998665 8999999 777776553    3689999999988 655  499999999997


Q ss_pred             cCC-------------hhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          264 DYD-------------DEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       264 ~~~-------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ++.             .+...++|++++++|+|   ||++++.++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~  161 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSA  161 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCC
Confidence            765             34567899999999999   9999998764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.37  E-value=2.1e-12  Score=118.44  Aligned_cols=151  Identities=13%  Similarity=0.110  Sum_probs=99.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CceEEeCCCCC---------CCC
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TD-------NLKFIAGDMNQ---------SIP  251 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~-------rv~~~~~d~~~---------~~~  251 (359)
                      ++.+|||||||+|..+..++.. ...+++|+|+ +.+++.|++     ..       +++|...|+..         +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            4689999999999877776664 3458999999 889888774     11       25687887721         223


Q ss_pred             --CccEEEecchhccC-ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC----------c-hHHH-HHHH----
Q 043623          252 --SADAFLFKLIFHDY-DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK----------P-EITE-AKLL----  312 (359)
Q Consensus       252 --~~D~i~~~~vlh~~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~----------~-~~~~-~~~~----  312 (359)
                        .||+|++..++|+. ++++..++|++++++|||   ||.+++..+........          . .... ....    
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  203 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA  203 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence              49999999999874 545567999999999999   99988876532211000          0 0000 0000    


Q ss_pred             hhhh-hhhhcC------CcccCHHHHHHHHHhcCCceeeEEec
Q 043623          313 YDAL-MMTCVP------GIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       313 ~~~~-~~~~~~------g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      .+.. .....+      -...+.+++.++++++||++++....
T Consensus       204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence            0000 000011      12467899999999999999888654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.34  E-value=2e-12  Score=115.63  Aligned_cols=106  Identities=14%  Similarity=0.050  Sum_probs=81.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC----C-CCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ----S-IPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~----~-~~~  252 (359)
                      ..++..++  ..++.+|||||||+|.++..++++  ..+++++|+ +.+++.+++   ...+.....++..    . ...
T Consensus        35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~  110 (261)
T 3iv6_A           35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH  110 (261)
T ss_dssp             HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred             HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence            55666665  677889999999999999999987  468999999 788887764   1222222222211    1 125


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ||+|++..++|+++.++...+++++.++| |   ||++++...
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~  149 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK  149 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence            99999999999999888889999999999 9   999988644

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.34  E-value=2.6e-11  Score=106.25  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhc----CCCCCCceEEeCCCCCC-----CC-CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIAD----LPETDNLKFIAGDMNQS-----IP-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~----a~~~~rv~~~~~d~~~~-----~~-~~D~i~~~  259 (359)
                      +.++.+|||+|||+|.++..+++.. |+.+++++|. +.+++.    ++..++++++.+|+.++     .+ .||+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            4567899999999999999999884 6679999999 655443    34457899999999871     23 49999975


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      ..    .......+++++++.|+|   ||++++. ..........+  ..               ....+++.++ +++ 
T Consensus       151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~--~~---------------~~~~~~l~~l-~~~-  203 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTKE--PE---------------QVFREVEREL-SEY-  203 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTSC--HH---------------HHHHHHHHHH-HTT-
T ss_pred             CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCCC--hh---------------hhhHHHHHHH-Hhh-
Confidence            43    222334559999999999   9999887 32221111110  00               0136777777 777 


Q ss_pred             CceeeEEecCCc---ceEEEEEC
Q 043623          340 FTSYKITPLLGL---RSFIEVYL  359 (359)
Q Consensus       340 f~~~~~~~~~~~---~~~i~~~~  359 (359)
                      |++++...+..+   +.++.++|
T Consensus       204 f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          204 FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             ceeeeEeccCcccCCCEEEEEEe
Confidence            999998888554   56666654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.34  E-value=1.1e-12  Score=118.10  Aligned_cols=96  Identities=13%  Similarity=0.193  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCchH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 043623          194 GLSSLVEVGGGTGS----FARIISEAFP----SIKCSVLEL-PHVIADLPET----------------------------  236 (359)
Q Consensus       194 ~~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~i~~a~~~----------------------------  236 (359)
                      +..+|+|+|||||.    +++.+++..|    +.++++.|+ +.+++.|++.                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    6666777655    468999999 7888766431                            


Q ss_pred             ---------CCceEEeCCCCC-CCC---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          237 ---------DNLKFIAGDMNQ-SIP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       237 ---------~rv~~~~~d~~~-~~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                               .+|+|..+|+.+ +++   .||+|+|.++|++++++...+++++++++|+|   ||.+++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence                     369999999998 564   49999999999999988888999999999999   888776

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.34  E-value=2.2e-13  Score=121.69  Aligned_cols=144  Identities=12%  Similarity=0.107  Sum_probs=95.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC----CCC-----CccEE
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ----SIP-----SADAF  256 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~----~~~-----~~D~i  256 (359)
                      ++.+|||+|||+|.++..++++.|+.+++++|+ +.+++.+++       .++++++.+|+.+    +++     .||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            567999999999999999999888899999999 788877653       4579999998533    333     49999


Q ss_pred             EecchhccCCh-------------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623          257 LFKLIFHDYDD-------------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG  323 (359)
Q Consensus       257 ~~~~vlh~~~d-------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (359)
                      +++-.+|....             +....++.+++++|+|   ||.+.+++.....        .........+.....+
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~--------~~~~l~~~g~~~~~~~  213 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD--------SLQLKKRLRWYSCMLG  213 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH--------HHHHGGGBSCEEEEES
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH--------HHhcccceEEEEECCC
Confidence            99866654331             1123567889999999   8988877643211        0000000000111123


Q ss_pred             cccCHHHHHHHHHhcCCceeeEEec
Q 043623          324 IERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       324 ~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      ...+.+++.++|+++||+.+++..+
T Consensus       214 ~~~~~~~~~~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          214 KKCSLAPLKEELRIQGVPKVTYTEF  238 (254)
T ss_dssp             STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             ChhHHHHHHHHHHHcCCCceEEEEE
Confidence            4445689999999999999888776

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.34  E-value=6.4e-12  Score=110.26  Aligned_cols=128  Identities=16%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCC--CCCC--CccEEEecc
Q 043623          192 FDGLSSLVEVGGG-TGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMN--QSIP--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~--~~~~--~~D~i~~~~  260 (359)
                      ++++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++     ..+++++.+|+.  .+++  .||+|+++-
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4677899999999 999999999986 679999999 778877653     238999999964  3443  499999887


Q ss_pred             hhccCChhH-----------------HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623          261 IFHDYDDEV-----------------CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG  323 (359)
Q Consensus       261 vlh~~~d~~-----------------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (359)
                      .++..++..                 ..++++.+.+.|+|   ||+++++-+...                         
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~-------------------------  183 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE-------------------------  183 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence            766544322                 26789999999999   899988633210                         


Q ss_pred             cccCHHHHHHHHHhcCCceeeEEecCC
Q 043623          324 IERSEKEWERLFFDAGFTSYKITPLLG  350 (359)
Q Consensus       324 ~~~t~~e~~~ll~~aGf~~~~~~~~~~  350 (359)
                        ...+++.+++++.||.+..+....+
T Consensus       184 --~~~~~~~~~l~~~g~~~~~~~~~~g  208 (230)
T 3evz_A          184 --KLLNVIKERGIKLGYSVKDIKFKVG  208 (230)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             --hHHHHHHHHHHHcCCceEEEEecCC
Confidence              0367888999999998777655544

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.33  E-value=3.5e-13  Score=119.07  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEEe-cc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFLF-KL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~~-~~  260 (359)
                      .++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++     ..+++++.+|+.+   +++  .||+|++ .+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4568999999999999999976544 38999999 788776654     4679999999875   344  4999999 55


Q ss_pred             h--hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          261 I--FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       261 v--lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      .  .+.+.......++++++++|||   ||++++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence            4  3344444455789999999999   9999887654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.33  E-value=6.2e-12  Score=109.59  Aligned_cols=130  Identities=12%  Similarity=0.086  Sum_probs=101.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC---CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP---SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~---~~D~i~~~~  260 (359)
                      .+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++       .++|+++.+|.+++++   .||+|+..+
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            34668999999999999999999999989999999 777777664       5689999999988544   499999876


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      +    ..+....+|..+.+.|+|   +|++++ .+..                             ..+.++++|.+.||
T Consensus        93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf  135 (225)
T 3kr9_A           93 M----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGF  135 (225)
T ss_dssp             E----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTE
T ss_pred             C----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCC
Confidence            4    344467899999999999   777666 3320                             35667889999999


Q ss_pred             ceeeEEec---CCcceEEEEE
Q 043623          341 TSYKITPL---LGLRSFIEVY  358 (359)
Q Consensus       341 ~~~~~~~~---~~~~~~i~~~  358 (359)
                      .+.+-.-+   +-++.+|.+.
T Consensus       136 ~i~~e~lv~e~~~~Yeii~~~  156 (225)
T 3kr9_A          136 QIVAESILEEAGKFYEILVVE  156 (225)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEEEE
Confidence            98886543   3356676654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.32  E-value=9.4e-12  Score=107.47  Aligned_cols=122  Identities=18%  Similarity=0.206  Sum_probs=94.5

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~  251 (359)
                      .++..+.  ..++.+|||||||+|.++..+++.  ..+++++|+ +++++.+++       .++++++.+|+.+   ..+
T Consensus        46 ~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~  121 (204)
T 3njr_A           46 LTLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP  121 (204)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred             HHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence            3445554  567789999999999999999998  779999999 778877653       2389999999987   234


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++...+    +  .. +++++.+.|+|   ||++++.....          .                  +..++
T Consensus       122 ~~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~----------~------------------~~~~~  163 (204)
T 3njr_A          122 LPEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVTL----------E------------------SETLL  163 (204)
T ss_dssp             CCSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECSH----------H------------------HHHHH
T ss_pred             CCCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecCc----------c------------------cHHHH
Confidence            69999988744    2  23 79999999999   89988865421          0                  35677


Q ss_pred             HHHHHhcCCceeeEE
Q 043623          332 ERLFFDAGFTSYKIT  346 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~  346 (359)
                      .+++++.||.+.++.
T Consensus       164 ~~~l~~~g~~i~~i~  178 (204)
T 3njr_A          164 TQLHARHGGQLLRID  178 (204)
T ss_dssp             HHHHHHHCSEEEEEE
T ss_pred             HHHHHhCCCcEEEEE
Confidence            888899998877764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.32  E-value=1.8e-12  Score=114.79  Aligned_cols=121  Identities=16%  Similarity=0.202  Sum_probs=93.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-----CCccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-----PSADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-----~~~D~i~~~  259 (359)
                      .++.+|||||||+|.++..++...|+.+++++|+ +.+++.+++      ..+|+++.+|+.+ +.     ..||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            4678999999999999999999889999999999 777776653      3469999999876 43     249999987


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      .+    .+  ...+++.+.+.|+|   ||.+++.....     .    ..                 ..+++.+.+++.|
T Consensus       149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~-----~----~~-----------------~~~~~~~~l~~~g  193 (240)
T 1xdz_A          149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS-----A----EE-----------------ELNAGKKAITTLG  193 (240)
T ss_dssp             CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC------C----HH-----------------HHHHHHHHHHHTT
T ss_pred             cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC-----c----hH-----------------HHHHHHHHHHHcC
Confidence            73    33  45789999999999   89988763210     0    00                 2356778899999


Q ss_pred             CceeeEEec
Q 043623          340 FTSYKITPL  348 (359)
Q Consensus       340 f~~~~~~~~  348 (359)
                      |++.++..+
T Consensus       194 ~~~~~~~~~  202 (240)
T 1xdz_A          194 GELENIHSF  202 (240)
T ss_dssp             EEEEEEEEE
T ss_pred             CeEeEEEEE
Confidence            998887653

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.32  E-value=1.5e-11  Score=107.95  Aligned_cols=141  Identities=13%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHH----hcCCCCCCceEEeCCCCCC-----C-CCccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVI----ADLPETDNLKFIAGDMNQS-----I-PSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i----~~a~~~~rv~~~~~d~~~~-----~-~~~D~i~~~  259 (359)
                      +.++.+|||+|||+|.++..+++. .|+.+++++|+ +.++    +.++...+|.++.+|+..+     . ..||+|++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            567899999999999999999986 46889999999 6553    3343357899999998762     1 249999887


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      ...   ++ ....++..+++.|||   ||++++...........+                   +.-..++..+.|+++|
T Consensus       154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~~-------------------~~e~~~~~~~~L~~~g  207 (232)
T 3id6_C          154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTKD-------------------PKEIYKTEVEKLENSN  207 (232)
T ss_dssp             CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------CC-------------------SSSSTTHHHHHHHHTT
T ss_pred             CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCCC-------------------HHHHHHHHHHHHHHCC
Confidence            543   33 233345667779999   999988732211111100                   0012344566778899


Q ss_pred             CceeeEEecCC---cceEEEEE
Q 043623          340 FTSYKITPLLG---LRSFIEVY  358 (359)
Q Consensus       340 f~~~~~~~~~~---~~~~i~~~  358 (359)
                      |++.++..+..   .+.++.++
T Consensus       208 f~~~~~~~l~p~~~~h~~v~~~  229 (232)
T 3id6_C          208 FETIQIINLDPYDKDHAIVLSK  229 (232)
T ss_dssp             EEEEEEEECTTTCSSCEEEEEE
T ss_pred             CEEEEEeccCCCcCceEEEEEE
Confidence            99999998843   36666665

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.32  E-value=5.8e-12  Score=106.68  Aligned_cols=132  Identities=15%  Similarity=0.184  Sum_probs=91.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CC-C-CccEEEec-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SI-P-SADAFLFK-  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~-~-~~D~i~~~-  259 (359)
                      +.++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      .++++++..|+..  .+ + .||+|+++ 
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            456789999999999999999987  679999999 788887764      3789999877655  12 3 49999887 


Q ss_pred             chhccC------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          260 LIFHDY------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       260 ~vlh~~------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      ..+++-      ..+....+|+++.+.|+|   ||++++...........    ..                ....+|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~----------------~~~~~~~~  154 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----EK----------------DAVLEYVI  154 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----HH----------------HHHHHHHH
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----HH----------------HHHHHHHH
Confidence            333320      224456789999999999   99998876543222111    00                02345555


Q ss_pred             HHHhcCCceeeEEec
Q 043623          334 LFFDAGFTSYKITPL  348 (359)
Q Consensus       334 ll~~aGf~~~~~~~~  348 (359)
                      .+...+|.+......
T Consensus       155 ~l~~~~~~~~~~~~~  169 (185)
T 3mti_A          155 GLDQRVFTAMLYQPL  169 (185)
T ss_dssp             HSCTTTEEEEEEEES
T ss_pred             hCCCceEEEEEehhh
Confidence            666677888777665

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.31  E-value=1.7e-12  Score=117.43  Aligned_cols=125  Identities=16%  Similarity=0.160  Sum_probs=94.4

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCceEEeCCCCCCCC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE----T---DNLKFIAGDMNQSIP--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~----~---~rv~~~~~d~~~~~~--  251 (359)
                      .++..++  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++    .   ++++++.+|+.++++  
T Consensus       101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  178 (275)
T 1yb2_A          101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  178 (275)
T ss_dssp             -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence            4444444  667889999999999999999998 78899999999 777766543    2   589999999988554  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++     ++++.  .++|+++.+.|+|   ||++++..+..          .                  ..+++
T Consensus       179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~----------~------------------~~~~~  220 (275)
T 1yb2_A          179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNF----------D------------------QSEKT  220 (275)
T ss_dssp             CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSH----------H------------------HHHHH
T ss_pred             CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCH----------H------------------HHHHH
Confidence            4999998     34444  3679999999999   89998876421          0                  24556


Q ss_pred             HHHHHhcCCceeeEEe
Q 043623          332 ERLFFDAGFTSYKITP  347 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~  347 (359)
                      .+.++++||+.+++..
T Consensus       221 ~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          221 VLSLSASGMHHLETVE  236 (275)
T ss_dssp             HHHSGGGTEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEEE
Confidence            7777888988877765

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.31  E-value=8.6e-12  Score=108.36  Aligned_cols=97  Identities=15%  Similarity=0.226  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~~~v  261 (359)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      .++++++.+|+.+ +  ++  .||+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            467999999999999999999999999999999 778777654      3689999999987 3  43  4999998865


Q ss_pred             hccCChh------HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          262 FHDYDDE------VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       262 lh~~~d~------~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .......      ....+++.+.+.|+|   ||.+++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~  155 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK  155 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEE
Confidence            3211100      124689999999999   8988774

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.31  E-value=8.2e-12  Score=111.38  Aligned_cols=126  Identities=13%  Similarity=0.175  Sum_probs=98.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--  251 (359)
                      .++..++  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++       .++++++.+|+.+.++  
T Consensus        84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (255)
T 3mb5_A           84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE  161 (255)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred             HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence            3445544  667889999999999999999999 88999999999 778777654       4669999999998554  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++     +.++.  ..+++++.+.|+|   ||++++..+..          .                  ..+++
T Consensus       162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~----------~------------------~~~~~  203 (255)
T 3mb5_A          162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCS----------N------------------QVMRL  203 (255)
T ss_dssp             SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSH----------H------------------HHHHH
T ss_pred             CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCH----------H------------------HHHHH
Confidence            4999987     34443  3679999999999   99998875421          0                  25567


Q ss_pred             HHHHHhcC--CceeeEEec
Q 043623          332 ERLFFDAG--FTSYKITPL  348 (359)
Q Consensus       332 ~~ll~~aG--f~~~~~~~~  348 (359)
                      .+++++.|  |..+++...
T Consensus       204 ~~~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          204 HEKLREFKDYFMKPRTINV  222 (255)
T ss_dssp             HHHHHHTGGGBSCCEEECC
T ss_pred             HHHHHHcCCCccccEEEEE
Confidence            78888999  888777543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.31  E-value=1.1e-11  Score=108.23  Aligned_cols=130  Identities=9%  Similarity=0.017  Sum_probs=102.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-CC--CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-IP--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~~--~~D~i~~~~  260 (359)
                      .+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++       .++|+++.+|.++. .+  .||+|+..+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence            35678999999999999999999988889999999 777777664       57899999999984 33  499998876


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      +    .-+....+|....+.|++   +|++++.-..                              ..+.++++|.+.||
T Consensus        99 m----Gg~lI~~IL~~~~~~l~~---~~~lIlqp~~------------------------------~~~~lr~~L~~~Gf  141 (230)
T 3lec_A           99 M----GGRLIADILNNDIDKLQH---VKTLVLQPNN------------------------------REDDLRKWLAANDF  141 (230)
T ss_dssp             E----CHHHHHHHHHHTGGGGTT---CCEEEEEESS------------------------------CHHHHHHHHHHTTE
T ss_pred             C----chHHHHHHHHHHHHHhCc---CCEEEEECCC------------------------------ChHHHHHHHHHCCC
Confidence            4    335567899999999998   7877664320                              36677999999999


Q ss_pred             ceeeEEec---CCcceEEEEE
Q 043623          341 TSYKITPL---LGLRSFIEVY  358 (359)
Q Consensus       341 ~~~~~~~~---~~~~~~i~~~  358 (359)
                      .+.+-.-+   +-++.+|.+.
T Consensus       142 ~i~~E~lv~e~~~~Yeii~~~  162 (230)
T 3lec_A          142 EIVAEDILTENDKRYEILVVK  162 (230)
T ss_dssp             EEEEEEEEEC--CEEEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEEEE
Confidence            99887654   3456777764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.30  E-value=1.4e-12  Score=114.34  Aligned_cols=114  Identities=11%  Similarity=0.101  Sum_probs=88.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC--CCC---CccEEEecchhccC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ--SIP---SADAFLFKLIFHDY  265 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~--~~~---~~D~i~~~~vlh~~  265 (359)
                      .++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ .++++++.+|+.+  +++   .||+|+++.     
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-----  119 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-----  119 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence            56789999999999999999998  569999999 788887765 6789999999965  444   499999871     


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~  345 (359)
                       +  ..++|+++++.|+|   ||+++..                             +...+.+++.++++++||+..++
T Consensus       120 -~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          120 -G--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             -C--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred             -C--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence             2  23679999999999   8888810                             00124567788888888887776


Q ss_pred             Eec
Q 043623          346 TPL  348 (359)
Q Consensus       346 ~~~  348 (359)
                      ...
T Consensus       165 ~~~  167 (226)
T 3m33_A          165 DHV  167 (226)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.30  E-value=8.5e-12  Score=111.52  Aligned_cols=129  Identities=15%  Similarity=0.203  Sum_probs=99.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCC--CCccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSI--PSADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~--~~~D~i~~~~vlh  263 (359)
                      ..++.+|||+|||+|.++..+++..+  +++++|+ +.+++.+++     .-.++++.+|+.+.+  ..||+|+++...|
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence            35678999999999999999998765  9999999 777776654     112899999987633  3599999875543


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                           ....+++++.+.|+|   ||++++......                            +.+++.++++++||+++
T Consensus       196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~  239 (254)
T 2nxc_A          196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred             -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence                 246789999999999   899988655321                            36788999999999999


Q ss_pred             eEEecCCcceEEEEEC
Q 043623          344 KITPLLGLRSFIEVYL  359 (359)
Q Consensus       344 ~~~~~~~~~~~i~~~~  359 (359)
                      ++....+... +.++|
T Consensus       240 ~~~~~~~W~~-l~~~k  254 (254)
T 2nxc_A          240 EEAAEGEWVL-LAYGR  254 (254)
T ss_dssp             EEEEETTEEE-EEEEC
T ss_pred             EEeccCCeEE-EEEEC
Confidence            9887766544 34443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.29  E-value=5.3e-12  Score=114.11  Aligned_cols=95  Identities=18%  Similarity=0.298  Sum_probs=79.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCCccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPSADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~~D~i~~~~vlh  263 (359)
                      +.++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++      .++|+++.+|+.+ +..+||+|++...  
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~--  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL--  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence            67889999999999988877767778999999999 888888764      3789999999988 5346999998754  


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                       .++  ..++++++++.|||   ||++++.+
T Consensus       198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~  222 (298)
T 3fpf_A          198 -AEP--KRRVFRNIHRYVDT---ETRIIYRT  222 (298)
T ss_dssp             -CSC--HHHHHHHHHHHCCT---TCEEEEEE
T ss_pred             -ccC--HHHHHHHHHHHcCC---CcEEEEEc
Confidence             233  45789999999999   99999876

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.29  E-value=3.9e-12  Score=109.72  Aligned_cols=91  Identities=13%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC--CCccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI--PSADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~--~~~D~i~~~~vlh~  264 (359)
                      ++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++      ..+++++.+|+.+..  ..||+|++..+   
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence            368999999999999999999999999999999 777776653      245999999998832  35999997542   


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       .+  ...+++++.+.|+|   ||.+++.
T Consensus       142 -~~--~~~~l~~~~~~L~~---gG~l~~~  164 (207)
T 1jsx_A          142 -AS--LNDMVSWCHHLPGE---QGRFYAL  164 (207)
T ss_dssp             -SS--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred             -CC--HHHHHHHHHHhcCC---CcEEEEE
Confidence             22  35789999999999   8988876

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.29  E-value=8e-12  Score=114.64  Aligned_cols=129  Identities=12%  Similarity=0.094  Sum_probs=94.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC-C---CC-CccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ-S---IP-SADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~-~---~~-~~D~i  256 (359)
                      +++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++          .+|++++.+|+.+ .   .+ .||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4568999999999999999999877889999999 777766543          4789999999876 2   12 49999


Q ss_pred             EecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623          257 LFKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL  334 (359)
Q Consensus       257 ~~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l  334 (359)
                      ++....+..++...  .+++++++++|+|   ||.+++....    ....                    .....++.+.
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~----~~~~--------------------~~~~~~~~~~  226 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGES----IWLD--------------------LELIEKMSRF  226 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECC----TTTC--------------------HHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCC----cccc--------------------hHHHHHHHHH
Confidence            99876665544322  5789999999999   8888876321    0000                    0146788999


Q ss_pred             HHhcCCceeeEEec
Q 043623          335 FFDAGFTSYKITPL  348 (359)
Q Consensus       335 l~~aGf~~~~~~~~  348 (359)
                      ++++||..+++...
T Consensus       227 l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          227 IRETGFASVQYALM  240 (304)
T ss_dssp             HHHHTCSEEEEEEC
T ss_pred             HHhCCCCcEEEEEe
Confidence            99999998887654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.29  E-value=2.6e-12  Score=114.53  Aligned_cols=121  Identities=9%  Similarity=0.028  Sum_probs=94.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-----CCccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-----PSADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-----~~~D~i~~~  259 (359)
                      .++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++      ..+|+++.+|+.+ +.     ..||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4578999999999999999999999999999998 777776653      3469999999877 32     259999987


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      .+    .+  ...+++.+.+.|+|   ||++++.....    ..    .                  ...++...+++.|
T Consensus       159 a~----~~--~~~ll~~~~~~Lkp---gG~l~~~~g~~----~~----~------------------e~~~~~~~l~~~G  203 (249)
T 3g89_A          159 AV----AP--LCVLSELLLPFLEV---GGAAVAMKGPR----VE----E------------------ELAPLPPALERLG  203 (249)
T ss_dssp             SS----CC--HHHHHHHHGGGEEE---EEEEEEEECSC----CH----H------------------HHTTHHHHHHHHT
T ss_pred             Cc----CC--HHHHHHHHHHHcCC---CeEEEEEeCCC----cH----H------------------HHHHHHHHHHHcC
Confidence            54    22  34789999999999   99988765321    00    0                  2345677788899


Q ss_pred             CceeeEEec
Q 043623          340 FTSYKITPL  348 (359)
Q Consensus       340 f~~~~~~~~  348 (359)
                      |++.++.++
T Consensus       204 ~~~~~~~~~  212 (249)
T 3g89_A          204 GRLGEVLAL  212 (249)
T ss_dssp             EEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            999888765

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.28  E-value=5e-12  Score=108.21  Aligned_cols=134  Identities=13%  Similarity=0.155  Sum_probs=96.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CC--CccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IP--SADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~--~~D~i~~  258 (359)
                      ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++       .++++++.+|+.+ + ..  .||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4667899999999999999999985 6789999999 778877654       3689999999876 2 32  4999998


Q ss_pred             cchhcc-------CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          259 KLIFHD-------YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       259 ~~vlh~-------~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      ...+..       ...+...++++++.+.|+|   ||++++...........    ...                ...+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~----~~~----------------~~~~~  156 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGDTGFE----EKE----------------KVLEF  156 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTTTBSH----HHH----------------HHHHH
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCCCcHH----HHH----------------HHHHH
Confidence            875511       1223456799999999999   99999887644322211    000                23344


Q ss_pred             HHHHHhcCCceeeEEec
Q 043623          332 ERLFFDAGFTSYKITPL  348 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~~  348 (359)
                      .+.+...+|++.....+
T Consensus       157 ~~~l~~~~~~v~~~~~~  173 (197)
T 3eey_A          157 LKGVDQKKFIVQRTDFI  173 (197)
T ss_dssp             HTTSCTTTEEEEEEEET
T ss_pred             HHhCCCCcEEEEEEEec
Confidence            44455677888777665

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.27  E-value=8.2e-12  Score=117.80  Aligned_cols=107  Identities=18%  Similarity=0.322  Sum_probs=85.9

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C--CCceEEeCCCCCCCC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T--DNLKFIAGDMNQSIP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~--~rv~~~~~d~~~~~~-  251 (359)
                      .+++.++  ..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++       .  .+++++.+|++++++ 
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4566665  44558999999999999999999999999999999 778877664       1  258889999998655 


Q ss_pred             -CccEEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          252 -SADAFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       252 -~~D~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                       .||+|+++..+|+   ..+....++|+++.+.|+|   ||.++++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~  334 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  334 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence             4999999998885   3455566899999999999   89998864

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.27  E-value=2.4e-11  Score=108.85  Aligned_cols=124  Identities=12%  Similarity=0.135  Sum_probs=94.4

Q ss_pred             cC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C--CC--CccEEE
Q 043623          192 FD-GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S--IP--SADAFL  257 (359)
Q Consensus       192 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~--~~--~~D~i~  257 (359)
                      .. ++.+|||+|||+|.++..++++.+. +++++|+ +.+++.+++       .++++++.+|+.+ +  ++  .||+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            45 6789999999999999999998776 9999999 777776653       4689999999987 3  32  499999


Q ss_pred             ecchhccC------------------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623          258 FKLIFHDY------------------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT  319 (359)
Q Consensus       258 ~~~vlh~~------------------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
                      ++-.++..                  .......+++.+.+.|+|   ||+++++-.   .                    
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~---~--------------------  178 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVHR---P--------------------  178 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEEC---T--------------------
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEEc---H--------------------
Confidence            97544322                  112345799999999999   899888421   1                    


Q ss_pred             hcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          320 CVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                            ....++.+++++.||...++.++
T Consensus       179 ------~~~~~~~~~l~~~~~~~~~~~~v  201 (259)
T 3lpm_A          179 ------ERLLDIIDIMRKYRLEPKRIQFV  201 (259)
T ss_dssp             ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ------HHHHHHHHHHHHCCCceEEEEEe
Confidence                  04567788899999998887665

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.27  E-value=1.7e-11  Score=112.85  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCceEEeCCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMN  247 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~  247 (359)
                      ..+++.+....+++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++             ..+++++.+|+.
T Consensus        22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~  100 (313)
T 3bgv_A           22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS  100 (313)
T ss_dssp             HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred             HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence            3344443322346789999999999999999884 6779999999 777776653             237899999998


Q ss_pred             C-C----C--C--CccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          248 Q-S----I--P--SADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       248 ~-~----~--~--~~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      + +    +  +  .||+|++..++|+.  +.++...+|++++++|+|   ||.+++..+.
T Consensus       101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~  157 (313)
T 3bgv_A          101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN  157 (313)
T ss_dssp             TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred             ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence            7 4    3  2  49999999999987  445567899999999999   8998887653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.26  E-value=1.5e-11  Score=104.24  Aligned_cols=119  Identities=19%  Similarity=0.277  Sum_probs=93.2

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC-CC
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-PS  252 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-~~  252 (359)
                      ++..+.  ..++.+|||+|||+|.++..+++..  .+++++|. +.+++.+++       .++++++.+|+.+  +. +.
T Consensus        25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (192)
T 1l3i_A           25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (192)
T ss_dssp             HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence            344444  5677899999999999999999987  79999999 777776653       2689999999876  22 46


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++..++++     ...+++++.+.|+|   ||.+++.....          .                  +..++.
T Consensus       101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------~------------------~~~~~~  144 (192)
T 1l3i_A          101 IDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------E------------------TKFEAM  144 (192)
T ss_dssp             EEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------H------------------HHHHHH
T ss_pred             CCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------c------------------hHHHHH
Confidence            999999988764     35789999999999   89888865421          0                  356778


Q ss_pred             HHHHhcCCce
Q 043623          333 RLFFDAGFTS  342 (359)
Q Consensus       333 ~ll~~aGf~~  342 (359)
                      +++++.||.+
T Consensus       145 ~~l~~~g~~~  154 (192)
T 1l3i_A          145 ECLRDLGFDV  154 (192)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHCCCce
Confidence            8999999954

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.26  E-value=1.8e-11  Score=110.84  Aligned_cols=121  Identities=15%  Similarity=0.118  Sum_probs=93.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~v  261 (359)
                      ..++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++       .++++++.+|+.+ ..+ .||+|++...
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p  201 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence            346789999999999999999999876 8999999 778776653       4569999999998 333 4999998533


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      .      ...++++.+.+.|+|   ||.+++.+........                      ....+++.+.++++||+
T Consensus       202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD  250 (278)
T ss_dssp             S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred             h------hHHHHHHHHHHHCCC---CeEEEEEEeecccccc----------------------ccHHHHHHHHHHHcCCe
Confidence            1      124679999999999   8999888776422111                      11567888999999999


Q ss_pred             eee
Q 043623          342 SYK  344 (359)
Q Consensus       342 ~~~  344 (359)
                      ...
T Consensus       251 ~~~  253 (278)
T 2frn_A          251 VEK  253 (278)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            766

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.25  E-value=5.1e-12  Score=118.03  Aligned_cols=109  Identities=15%  Similarity=0.214  Sum_probs=88.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCCCcc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIPSAD  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~~~D  254 (359)
                      ..+++.++  .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ...++++.+|+++ ....||
T Consensus       186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            45566654  33467999999999999999999999999999999 777776654     3346788999987 333599


Q ss_pred             EEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          255 AFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       255 ~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +|+++.++|+   ...+...++|++++++|+|   ||.++++..
T Consensus       264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~  304 (343)
T 2pjd_A          264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN  304 (343)
T ss_dssp             EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred             EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence            9999999986   3455567899999999999   999998765

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.24  E-value=2.9e-11  Score=106.37  Aligned_cols=130  Identities=8%  Similarity=0.067  Sum_probs=101.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCC-C--CccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSI-P--SADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~-~--~~D~i~~~~  260 (359)
                      .+++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|++       .++|++..+|.++.+ +  .||+|++.+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            35668999999999999999999998889999999 777777664       578999999999843 3  399999865


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      +    .-+....+|....+.|++   ++++++.-..                              ..+.++++|.+.||
T Consensus        99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~~~------------------------------~~~~lr~~L~~~Gf  141 (244)
T 3gnl_A           99 M----GGTLIRTILEEGAAKLAG---VTKLILQPNI------------------------------AAWQLREWSEQNNW  141 (244)
T ss_dssp             E----CHHHHHHHHHHTGGGGTT---CCEEEEEESS------------------------------CHHHHHHHHHHHTE
T ss_pred             C----chHHHHHHHHHHHHHhCC---CCEEEEEcCC------------------------------ChHHHHHHHHHCCC
Confidence            4    445577899999999998   7777764310                              36677899999999


Q ss_pred             ceeeEEec---CCcceEEEEE
Q 043623          341 TSYKITPL---LGLRSFIEVY  358 (359)
Q Consensus       341 ~~~~~~~~---~~~~~~i~~~  358 (359)
                      .+.+-.-+   +-++.+|.+.
T Consensus       142 ~i~~E~lv~e~~k~Yeii~~~  162 (244)
T 3gnl_A          142 LITSEAILREDNKVYEIMVLA  162 (244)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEEEE
Confidence            98665433   3456666654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.24  E-value=1.4e-11  Score=103.53  Aligned_cols=96  Identities=15%  Similarity=0.111  Sum_probs=75.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~v  261 (359)
                      +.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++       ..++++  .|..+ +.+ .||+|++..+
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            35678999999999999999999999999999999 788887764       224555  66665 333 4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      ||++++  ....+.++.+.|+|   ||.++-.+
T Consensus       125 LHlL~~--~~~al~~v~~~L~p---ggvfISfp  152 (200)
T 3fzg_A          125 LPVLKQ--QDVNILDFLQLFHT---QNFVISFP  152 (200)
T ss_dssp             HHHHHH--TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred             HHhhhh--hHHHHHHHHHHhCC---CCEEEEeC
Confidence            999933  34557799999999   55444444

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.22  E-value=2.1e-11  Score=108.75  Aligned_cols=125  Identities=16%  Similarity=0.208  Sum_probs=96.5

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      .++..++  ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++       .++++++.+|+.+ +++ 
T Consensus        87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            4555555  677889999999999999999998 68889999998 777766653       3689999999987 465 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                       .||+|++     ++++.  .++|+++.++|+|   ||++++..+..          .                  ...+
T Consensus       165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~----------~------------------~~~~  206 (258)
T 2pwy_A          165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNI----------T------------------QVLE  206 (258)
T ss_dssp             TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCH----------H------------------HHHH
T ss_pred             CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCH----------H------------------HHHH
Confidence             3999997     34443  3679999999999   99999877421          0                  1345


Q ss_pred             HHHHHHhcCCceeeEEe
Q 043623          331 WERLFFDAGFTSYKITP  347 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~  347 (359)
                      +.+.++++||..+++..
T Consensus       207 ~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          207 LVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             HHHHHTTTTEEEEEEEE
T ss_pred             HHHHHHHCCCceEEEEE
Confidence            66777788998776654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.22  E-value=1.6e-11  Score=109.99  Aligned_cols=149  Identities=13%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE  268 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~  268 (359)
                      +++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...-.++.+|+.+ +++  .||+|++..+++++.++
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~  130 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN  130 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence            36789999999999999999987  568999999 7788776641111388899987 654  49999999877666332


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC----CchHHHHHHHhhhhhhhh------cCCcccCHHHHHHHHHhc
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD----KPEITEAKLLYDALMMTC------VPGIERSEKEWERLFFDA  338 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~g~~~t~~e~~~ll~~a  338 (359)
                       ..++|+++++.|+|   ||++++..+.......    ...+..............      .....++.+++.++   +
T Consensus       131 -~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---a  203 (260)
T 2avn_A          131 -KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---E  203 (260)
T ss_dssp             -HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---T
T ss_pred             -HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---c
Confidence             56889999999999   8999887664321000    000000000000000000      00124688888888   9


Q ss_pred             CCceeeEEecCC
Q 043623          339 GFTSYKITPLLG  350 (359)
Q Consensus       339 Gf~~~~~~~~~~  350 (359)
                      ||+++++....+
T Consensus       204 Gf~~~~~~~~~~  215 (260)
T 2avn_A          204 GFETVDIRGIGV  215 (260)
T ss_dssp             TEEEEEEEEECS
T ss_pred             CceEEEEECCCC
Confidence            999998887643

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.22  E-value=1.3e-11  Score=115.34  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=85.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC-C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP-S  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~  252 (359)
                      ..+++.+.  ..++.+|||||||+|.++..++++ +..+++++|..++++.+++       .++|+++.+|+.+ +.+ .
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~  116 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  116 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence            34555554  456789999999999999999885 5569999999556655442       3789999999998 555 4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||+|++..+++++..+.....+.++++.|+|   ||.+++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence            9999999999888877777889999999999   8888754

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.21  E-value=1.8e-11  Score=102.79  Aligned_cols=109  Identities=11%  Similarity=0.065  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CC---C--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SI---P--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~---~--~~D~i~~~~vl  262 (359)
                      ..++.+|||||||.                +.+|. +.+++.+++  ..+++++.+|+.+ +.   +  .||+|++..++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            56789999999996                23787 778877764  3469999999987 44   4  39999999999


Q ss_pred             ccC-ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          263 HDY-DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       263 h~~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      |++ ++.  .++|++++++|||   ||++++.++.......                   ....++.++|.++|+++||
T Consensus        74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC
T ss_pred             hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC
Confidence            998 664  5789999999999   9999997664322110                   1123578999999999999

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.20  E-value=1.9e-11  Score=118.79  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=86.2

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC-C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP-S  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~  252 (359)
                      ..+++.+.  ..++.+|||||||+|.++..+++ .+..+++++|+.++++.+++       .++|+++.+|+.+ +.+ .
T Consensus       148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            45555554  45678999999999999998887 57789999999657665543       3789999999998 665 4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      ||+|++..++|++.++.....+.++++.|+|   ||.+++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~  261 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP  261 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence            9999999888888877778889999999999   888874

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.20  E-value=5.7e-11  Score=99.82  Aligned_cols=120  Identities=14%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--Cc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SA  253 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~  253 (359)
                      .++..+.  ..++.+|||+|||+|.++..+++  +..+++++|. +.+++.+++      .++++++.+|+.++++  .|
T Consensus        26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~  101 (183)
T 2yxd_A           26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF  101 (183)
T ss_dssp             HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence            3444444  55678999999999999999998  7889999999 778777654      2689999999887443  59


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..+      .....+++++++.  |   ||.+++.....          .                  +..++.+
T Consensus       102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~----------~------------------~~~~~~~  142 (183)
T 2yxd_A          102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVL----------E------------------NAAKIIN  142 (183)
T ss_dssp             SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCH----------H------------------HHHHHHH
T ss_pred             cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEeccc----------c------------------cHHHHHH
Confidence            99999987      2245778998888  8   89998876421          0                  2566788


Q ss_pred             HHHhcCCceeeE
Q 043623          334 LFFDAGFTSYKI  345 (359)
Q Consensus       334 ll~~aGf~~~~~  345 (359)
                      +++++||.+..+
T Consensus       143 ~l~~~g~~~~~~  154 (183)
T 2yxd_A          143 EFESRGYNVDAV  154 (183)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHHcCCeEEEE
Confidence            999999876655

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.19  E-value=5e-11  Score=113.70  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=85.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC--------CCCceEEeCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL-------PE--------TDNLKFIAGD  245 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a-------~~--------~~rv~~~~~d  245 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.|       ++        ..+|+++.+|
T Consensus       232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            34455554  56788999999999999999999888778999999 6666555       32        2689999886


Q ss_pred             CC-CC--C----CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          246 MN-QS--I----PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       246 ~~-~~--~----~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      .+ .+  +    ..||+|+++++++.   ++....|+++.+.|+|   ||++++.+.+.+..
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~  365 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKV---GCKIISLKSLRSLT  365 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence            54 32  2    35999999877732   3456789999999999   99999998776654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.19  E-value=4.2e-11  Score=104.08  Aligned_cols=97  Identities=19%  Similarity=0.285  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~~~v  261 (359)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..+|+++.+|+.+ +  ++  .+|.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            457999999999999999999999999999999 778776653      3679999999886 3  43  4999887543


Q ss_pred             hccCChh-------HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          262 FHDYDDE-------VCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       262 lh~~~d~-------~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      .. |...       ....+|+.+.+.|+|   ||.+++..
T Consensus       118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t  153 (213)
T 2fca_A          118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT  153 (213)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred             CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence            21 2211       024789999999999   89888753

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.17  E-value=4.8e-11  Score=107.89  Aligned_cols=125  Identities=15%  Similarity=0.209  Sum_probs=95.4

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--  251 (359)
                      .++..++  ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++       .++++++.+|+.+.++  
T Consensus       103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  180 (277)
T 1o54_A          103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  180 (277)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence            4555555  667889999999999999999999 68899999998 777776653       2689999999987544  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .||+|++.     .++.  ..+|+++.++|+|   ||++++..+...                            ...++
T Consensus       181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~~  222 (277)
T 1o54_A          181 DVDALFLD-----VPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQET  222 (277)
T ss_dssp             SEEEEEEC-----CSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred             ccCEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence            49999983     3443  3679999999999   899988764210                            13455


Q ss_pred             HHHHHhcCCceeeEEe
Q 043623          332 ERLFFDAGFTSYKITP  347 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~  347 (359)
                      .+.|++.||..+++..
T Consensus       223 ~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          223 LKKLQELPFIRIEVWE  238 (277)
T ss_dssp             HHHHHHSSEEEEEEEC
T ss_pred             HHHHHHCCCceeEEEE
Confidence            6677778888776654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.17  E-value=1.9e-11  Score=106.71  Aligned_cols=98  Identities=12%  Similarity=0.084  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C--CC--CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S--IP--SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~--~~--~~D~i~~~~  260 (359)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..+|+++.+|+.+  +  ++  .+|.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            467999999999999999999999999999999 777776543      4579999999766  2  44  499999875


Q ss_pred             hhccCChhHH------HHHHHHHHHhcCCCCCCceEEEEe
Q 043623          261 IFHDYDDEVC------LKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       261 vlh~~~d~~~------~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      ..........      ..+++.+++.|+|   ||.+++..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t  150 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT  150 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence            4321111111      1489999999999   88887754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.17  E-value=1.3e-10  Score=105.06  Aligned_cols=142  Identities=11%  Similarity=0.114  Sum_probs=94.7

Q ss_pred             HHHHhcccccC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCceEEe-CCCCC----CCC--C
Q 043623          183 LIIKDCKHIFD-GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD-LPETDNLKFIA-GDMNQ----SIP--S  252 (359)
Q Consensus       183 ~l~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~-a~~~~rv~~~~-~d~~~----~~~--~  252 (359)
                      .++..+.  .. ++.+|||||||||.++..+++. +..+++++|+ +.|++. ++...++.... .|+..    .+|  .
T Consensus        75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~  151 (291)
T 3hp7_A           75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL  151 (291)
T ss_dssp             HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred             HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence            4455554  33 4679999999999999998886 4458999999 777766 33345654433 23322    123  3


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc-------c
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI-------E  325 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~  325 (359)
                      ||++++..++|++     ..+|+++++.|+|   ||+++++-  .|......      ...      ..+|.       .
T Consensus       152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~~------~~~------~~~G~vrd~~~~~  209 (291)
T 3hp7_A          152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAGR------EQI------GKNGIVRESSIHE  209 (291)
T ss_dssp             CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSCG------GGC------C-CCCCCCHHHHH
T ss_pred             CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccCh------hhc------CCCCccCCHHHHH
Confidence            9999998888754     4679999999999   99998861  11111100      000      00121       2


Q ss_pred             cCHHHHHHHHHhcCCceeeEEecC
Q 043623          326 RSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       326 ~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      +..+++.++++++||++..+...+
T Consensus       210 ~~~~~v~~~~~~~Gf~v~~~~~sp  233 (291)
T 3hp7_A          210 KVLETVTAFAVDYGFSVKGLDFSP  233 (291)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEECS
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECC
Confidence            367899999999999998887653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.16  E-value=4.7e-11  Score=104.20  Aligned_cols=99  Identities=12%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-----CCcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-----PSAD  254 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-----~~~D  254 (359)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++       .++|+++.+|+.+  + +     ..||
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            44678999999999999999999998 789999999 777766553       4679999999876  1 1     3499


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      +|++...     ......+++++.+.|+|   ||.+++.+....
T Consensus       136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred             EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9987654     23346789999999999   897777666543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.16  E-value=1.6e-10  Score=98.99  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCceEEeCCCCC-C----------
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP--SIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S----------  249 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~----------  249 (359)
                      ++.+.+. .+.++.+|||||||+|.++..+++++|  +.+++++|+.++.    ..++++++.+|+.+ +          
T Consensus        12 ~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i   86 (201)
T 2plw_A           12 ELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYI   86 (201)
T ss_dssp             HHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC------
T ss_pred             HHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhcccccc
Confidence            3444443 145678999999999999999999998  6899999995531    24679999999987 4          


Q ss_pred             ---------------CC--CccEEEecchhccCC----hhH-----HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          250 ---------------IP--SADAFLFKLIFHDYD----DEV-----CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       250 ---------------~~--~~D~i~~~~vlh~~~----d~~-----~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                                     ++  .||+|++...+|...    +..     ..++|+.+++.|+|   ||++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~  154 (201)
T 2plw_A           87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM  154 (201)
T ss_dssp             -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence                           34  499999988776532    211     12479999999999   89887743

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.16  E-value=1.6e-10  Score=96.33  Aligned_cols=106  Identities=13%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-C--------CC-
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S--------IP-  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~--------~~-  251 (359)
                      .+++.+. ...++.+|||+|||+|.++..+++.+ |+.+++++|+.++++    ..+++++.+|+.+ +        .+ 
T Consensus        12 ~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence            3444433 13567899999999999999999984 778999999955332    2789999999988 4        54 


Q ss_pred             -CccEEEecchhccCChhH---------HHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          252 -SADAFLFKLIFHDYDDEV---------CLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                       .||+|++..++|...+..         ..++++++.+.|+|   ||.+++....
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~  138 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ  138 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence             499999999888765431         15789999999999   8998886653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.15  E-value=1.2e-10  Score=102.80  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCC--C---C--CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQS--I---P--SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~--~---~--~~D~i~~~~  260 (359)
                      ++.+|||||||+|..+..+++.    .|+.+++++|+ +.+++.++. .++|+++.+|+.+.  +   .  .||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            4579999999999999999997    78899999999 778887764 57899999999873  1   2  499998866


Q ss_pred             hhccCChhHHHHHHHHHHH-hcCCCCCCceEEEEee
Q 043623          261 IFHDYDDEVCLKLLKNCRE-AVASSDGREKVIIVDI  295 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~-~L~p~~~gG~lli~e~  295 (359)
                      . |.    ...++|+++.+ .|+|   ||++++.+.
T Consensus       161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~  188 (236)
T 2bm8_A          161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM  188 (236)
T ss_dssp             S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred             c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence            5 42    34578999997 9999   999988776

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.14  E-value=6.4e-11  Score=104.99  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSAD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~D  254 (359)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +++++.+++       .++|+++.+|+.+  + .      ..||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            4568999999999999999999886 789999999 677776654       4689999999876  2 2      4599


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      +|++...     ......+|+++.+.|+|   ||.|++.+.....
T Consensus       139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g  175 (242)
T 3r3h_A          139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred             EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence            9988653     23356789999999999   8888887766544

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.14  E-value=7.8e-11  Score=102.14  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=80.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP---  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~---  251 (359)
                      .++..+.  ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++      .++++++.+|+..+.+   
T Consensus        68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            3444444  5677899999999999999999987 6689999999 777777654      3579999999876443   


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .||+|++..++|++++        ++.+.|+|   ||++++...
T Consensus       146 ~fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  178 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG  178 (215)
T ss_dssp             CEEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred             CeeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence            4999999999998773        67888999   899888754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.14  E-value=8.3e-11  Score=104.65  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=80.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 043623          194 GLSSLVEVGGGTGSFARIISEA--FPSIKCSVLEL-PHVIADLPE---TD-------N----------------------  238 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~i~~a~~---~~-------r----------------------  238 (359)
                      +..+|||+|||+|.++..+++.  .|..+++++|+ +.+++.+++   ..       +                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999999999998  77889999999 788877663   22       2                      


Q ss_pred             ---ce-------------EEeCCCCCCC-------C-CccEEEecchhccCCh-------hHHHHHHHHHHHhcCCCCCC
Q 043623          239 ---LK-------------FIAGDMNQSI-------P-SADAFLFKLIFHDYDD-------EVCLKLLKNCREAVASSDGR  287 (359)
Q Consensus       239 ---v~-------------~~~~d~~~~~-------~-~~D~i~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~g  287 (359)
                         |+             ++.+|++++.       . .||+|+++..++...+       +....+++++.+.|+|   |
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence               77             9999999843       3 5999999877665443       5566899999999999   9


Q ss_pred             ceEEEEeee
Q 043623          288 EKVIIVDIV  296 (359)
Q Consensus       288 G~lli~e~~  296 (359)
                      |+++++...
T Consensus       208 G~l~~~~~~  216 (250)
T 1o9g_A          208 AVIAVTDRS  216 (250)
T ss_dssp             CEEEEEESS
T ss_pred             cEEEEeCcc
Confidence            999985544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.14  E-value=8.5e-11  Score=101.53  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---CC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---PS  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~~  252 (359)
                      .++..+.  ..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++      ..+++++.+|..+..   ..
T Consensus        68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  143 (210)
T 3lbf_A           68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP  143 (210)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence            3444444  567889999999999999999998  579999999 777776653      357999999998832   24


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ||+|++..++|++++        .+.+.|+|   ||++++.-..
T Consensus       144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~  176 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE  176 (210)
T ss_dssp             EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred             ccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence            999999999998886        36788999   8988886543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.13  E-value=4.3e-11  Score=105.38  Aligned_cols=99  Identities=12%  Similarity=0.230  Sum_probs=79.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCC-----CCccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSI-----PSADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~-----~~~D~i~~  258 (359)
                      ..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++       .++|+++.+|+.+..     ..||+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            34678999999999999999999889999999999 778777654       368999999998732     24999997


Q ss_pred             cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      ...     ......+++.+.+.|+|   ||.+++.+....
T Consensus       149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~~  180 (232)
T 3ntv_A          149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLYH  180 (232)
T ss_dssp             ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTGG
T ss_pred             cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCcC
Confidence            643     22345789999999999   888877555443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.13  E-value=1.5e-10  Score=98.32  Aligned_cols=100  Identities=8%  Similarity=0.006  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--C--CCccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--I--PSADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~--~~~D~i~~~~  260 (359)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++      .++++++.+|+.+ .  .  ..||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            45689999999999999988774 5568999999 788877764      3689999999887 2  3  3599999988


Q ss_pred             hhccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623          261 IFHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV  297 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~  297 (359)
                      .+|+. .+...++++.+.+  .|+|   ||.+++.....
T Consensus       122 p~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~  156 (189)
T 3p9n_A          122 PYNVD-SADVDAILAALGTNGWTRE---GTVAVVERATT  156 (189)
T ss_dssp             CTTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred             CCCcc-hhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence            76643 3456788999999  9999   89888866543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.12  E-value=5e-11  Score=106.05  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=79.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CC---CCccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SI---PSADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~---~~~D~i  256 (359)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++       .++|+++.+|+.+   ..   ..||+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            45678999999999999999999998 889999999 777776653       4689999999865   22   159999


Q ss_pred             EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      ++..     +......+|+++.+.|+|   ||.|++.+....
T Consensus       141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~  174 (248)
T 3tfw_A          141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD  174 (248)
T ss_dssp             EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred             EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence            9854     233456789999999999   898887666543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.12  E-value=1.5e-10  Score=107.87  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=75.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      ..++.+|||||||+|.++..+++. +..+++++|..++++.+++       .++|+++.+|+.+ +++  .||+|++..+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            566789999999999999999987 4458999999557766653       3789999999998 665  4999998774


Q ss_pred             hccCC-hhHHHHHHHHHHHhcCCCCCCceEE
Q 043623          262 FHDYD-DEVCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      .+.+. ......+|+++.+.|+|   ||.++
T Consensus       141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li  168 (340)
T 2fyt_A          141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY  168 (340)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred             hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence            33222 22345789999999999   88876

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.11  E-value=7.2e-11  Score=110.42  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      ..++.+|||||||+|.++..++++ +..+++++|..++++.+++       .++|+++.+|+.+ +++  .||+|++..+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            346789999999999999999987 5669999999667666553       5679999999998 666  4999999765


Q ss_pred             hccCC-hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          262 FHDYD-DEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .|.+. ......+++.+.+.|+|   ||.++.
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li~  171 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAP---DGLIFP  171 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred             cccccCchhHHHHHHHHHHhCCC---CCEEcc
Confidence            44432 22345789999999999   888763

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.11  E-value=5.4e-11  Score=103.85  Aligned_cols=100  Identities=16%  Similarity=0.236  Sum_probs=78.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CC------CCc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SI------PSA  253 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~------~~~  253 (359)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++       .++|+++.+|+.+   ..      ..|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            34678999999999999999999864 789999999 778877664       4679999999744   12      359


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|++....+++.+  ..+++..+ +.|+|   ||.+++.+...
T Consensus       136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~~  173 (221)
T 3u81_A          136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVIV  173 (221)
T ss_dssp             SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCCC
T ss_pred             EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCCC
Confidence            99999887776644  34667777 99999   88887766553

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.10  E-value=1.7e-10  Score=109.00  Aligned_cols=96  Identities=11%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~  264 (359)
                      ++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++     ..+++++.+|+.+ ..+  .||+|+++..+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            5679999999999999999997  569999999 778877664     3358999999998 443  5999999999987


Q ss_pred             ---CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          265 ---YDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       265 ---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                         ...+...++++++++.|+|   ||.++|+.
T Consensus       311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~  340 (381)
T 3dmg_A          311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS  340 (381)
T ss_dssp             TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence               3456677899999999999   89988864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.10  E-value=1.6e-10  Score=101.90  Aligned_cols=98  Identities=14%  Similarity=0.139  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCceEEeCCCCC--C--CC--Cc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------ETDNLKFIAGDMNQ--S--IP--SA  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------~~~rv~~~~~d~~~--~--~~--~~  253 (359)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++            ...+|+++.+|+.+  +  ++  .+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4557899999999999999999999999999999 77765432            24689999999986  3  33  49


Q ss_pred             cEEEecchhccCChh---H----HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          254 DAFLFKLIFHDYDDE---V----CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       254 D~i~~~~vlh~~~d~---~----~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      |.|++...-. |...   .    ...+|+++.++|+|   ||.+++..
T Consensus       125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t  168 (235)
T 3ckk_A          125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT  168 (235)
T ss_dssp             EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence            9998653221 1110   0    13689999999999   89888753

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.10  E-value=1.3e-10  Score=104.11  Aligned_cols=99  Identities=9%  Similarity=0.256  Sum_probs=76.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCC--------CC-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQS--------IP-  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~--------~~-  251 (359)
                      ..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++          .++++++.+|+.+.        ++ 
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            45667999999999999999999999999999999 777765543          23699999999874        22 


Q ss_pred             -CccEEEecchhcc----------------CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 -SADAFLFKLIFHD----------------YDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 -~~D~i~~~~vlh~----------------~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       .||+|+++-.++.                ........+++.+.+.|+|   ||+++++
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~  169 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI  169 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence             4999999733322                1222256789999999999   8998875

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.09  E-value=1.1e-10  Score=106.88  Aligned_cols=98  Identities=17%  Similarity=0.295  Sum_probs=77.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC--CccEEEecchh
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP--SADAFLFKLIF  262 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~--~~D~i~~~~vl  262 (359)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      .+|++++.+|..+   ..+  .||+|++....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            34999999999999999999999999999999 788877653      4789999999876   333  49999987554


Q ss_pred             ccCChhH--HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          263 HDYDDEV--CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       263 h~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +......  ..++++.++++|+|   ||.+++.-.
T Consensus       170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence            4322221  15789999999999   887766543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.08  E-value=1.7e-10  Score=103.63  Aligned_cols=93  Identities=17%  Similarity=0.232  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCCh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDD  267 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d  267 (359)
                      .++.+|||||||+|.++..+++..|+.+++++|+ +.+++.+++ ..++.++.+|+.+ +++  .||+|++..+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            4678999999999999999999988889999999 778877765 5779999999987 554  49999987653     


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                          ..++++.++|+|   ||++++..+..
T Consensus       159 ----~~l~~~~~~L~p---gG~l~~~~~~~  181 (269)
T 1p91_A          159 ----CKAEELARVVKP---GGWVITATPGP  181 (269)
T ss_dssp             ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred             ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence                248899999999   99999987654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.08  E-value=1.1e-10  Score=110.17  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=79.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vl  262 (359)
                      ..++.+|||||||+|.++..++++.. .+++++|..++++.+++       .++|+++.+|+.+ +.+ .||+|++..+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            45678999999999999999999733 48999998766665543       4779999999988 555 59999997766


Q ss_pred             ccCChh-HHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          263 HDYDDE-VCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d~-~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      |....+ ....+++.+.+.|+|   ||.+++.+..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~  171 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR  171 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred             hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence            665432 355789999999999   8888765543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.08  E-value=2.1e-10  Score=100.55  Aligned_cols=98  Identities=16%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCCCC---Ccc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQSIP---SAD  254 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~~~---~~D  254 (359)
                      .++..+.  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++    ..+++++.+|+.+..+   .||
T Consensus        61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence            4444444  5677899999999999999999986  68999999 777776654    2289999999987332   499


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +|++..++|++.+        ++.+.|+|   ||++++...
T Consensus       137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~  166 (231)
T 1vbf_A          137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG  166 (231)
T ss_dssp             EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence            9999999998874        47788999   899888754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.08  E-value=1.5e-10  Score=101.73  Aligned_cols=98  Identities=13%  Similarity=0.231  Sum_probs=80.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C---CCccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I---PSADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~---~~~D~i~  257 (359)
                      ..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++       .++|+++.+|+.+  + .   ..||+|+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            34678999999999999999999999999999999 777776653       3689999999887  2 1   3599999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      +....+     ....+|+++.+.|+|   ||++++.+...
T Consensus       132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~  163 (233)
T 2gpy_A          132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF  163 (233)
T ss_dssp             EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred             ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence            987654     245789999999999   89888865543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.07  E-value=2.5e-10  Score=103.65  Aligned_cols=94  Identities=12%  Similarity=0.203  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC-Cc---cEEEec--
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP-SA---DAFLFK--  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~-~~---D~i~~~--  259 (359)
                      +..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++       .++++++.+|++++.+ .|   |+|+++  
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence            5679999999999999999999 9999999999 788877653       3479999999998543 48   999997  


Q ss_pred             ----------chhccCChh------HHHHHHHHHH-HhcCCCCCCceEEE
Q 043623          260 ----------LIFHDYDDE------VCLKLLKNCR-EAVASSDGREKVII  292 (359)
Q Consensus       260 ----------~vlh~~~d~------~~~~iL~~~~-~~L~p~~~gG~lli  292 (359)
                                .+. +.+..      +...+++++. +.|+|   ||.+++
T Consensus       202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~  247 (284)
T 1nv8_A          202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM  247 (284)
T ss_dssp             CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred             CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence                      222 22211      1126899999 99999   888776

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=9e-11  Score=102.48  Aligned_cols=98  Identities=10%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSAD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~D  254 (359)
                      .++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++       .++|+++.+|+.+  + .      ..||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            4568999999999999999999988 789999999 777776653       4679999999865  2 1      4599


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      +|++...     ......+++++.+.|+|   ||.+++.+....
T Consensus       143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  178 (225)
T 3tr6_A          143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR  178 (225)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9996542     33456789999999999   898888776654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.07  E-value=1.6e-10  Score=101.80  Aligned_cols=100  Identities=21%  Similarity=0.264  Sum_probs=79.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP---  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~---  251 (359)
                      ..++..+.  ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++      ..+++++.+|+..+++   
T Consensus        81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence            34455444  56778999999999999999999988 79999998 777776653      3469999999854544   


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .||+|++..+++++.+        ++.+.|+|   ||++++.-.
T Consensus       158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~  190 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG  190 (235)
T ss_dssp             CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence            3999999999988764        56788999   888887654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.07  E-value=5.8e-10  Score=101.03  Aligned_cols=98  Identities=14%  Similarity=0.185  Sum_probs=72.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCceEEeCCCCC---C-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL--PHVIADLPE------------T----DNLKFIAGDMNQ---S-  249 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~i~~a~~------------~----~rv~~~~~d~~~---~-  249 (359)
                      ..++.+|||||||+|.++..+++.. ..+++++|+  +.+++.+++            .    ++|+++..|..+   . 
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            3456899999999999999888863 348999999  466654432            1    478888655433   1 


Q ss_pred             -----CCCccEEEecchhccCChhHHHHHHHHHHHhcC---CCCCCceEEEE
Q 043623          250 -----IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVA---SSDGREKVIIV  293 (359)
Q Consensus       250 -----~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~---p~~~gG~lli~  293 (359)
                           ...||+|+++.++|+.++  ...+++.+.++|+   | ++||+++++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~  204 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT  204 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred             HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence                 135999999999988655  4578999999999   7 347887664

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.07  E-value=4.3e-10  Score=98.25  Aligned_cols=94  Identities=6%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCC---CC--CCccEEEecc
Q 043623          196 SSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQ---SI--PSADAFLFKL  260 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~---~~--~~~D~i~~~~  260 (359)
                      .+|||||||+|..+..+++..| +.+++++|+ +++++.+++       . ++|+++.+|+.+   ..  ..||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            3999999999999999999875 789999999 777776653       3 689999999876   23  2499998865


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      ..     .....+++.+.+.|+|   ||.+++.+..+
T Consensus       138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~  166 (221)
T 3dr5_A          138 SP-----MDLKALVDAAWPLLRR---GGALVLADALL  166 (221)
T ss_dssp             CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred             cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence            32     2245689999999999   88887765554

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.06  E-value=3e-10  Score=99.80  Aligned_cols=131  Identities=8%  Similarity=0.019  Sum_probs=96.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~  264 (359)
                      .++.+|||||||+|-++..+....|..+++++|+ +.+++.++.     ..+.++...|... +.+ .||++++.-++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            4578999999999999999999999999999999 778776654     5567889999988 333 4999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  344 (359)
                      +.++.....+ ++.++|+|   +| ++|.=+...-....+-+.   ..              -.+.|++.+.+.|..+.+
T Consensus       211 Le~q~kg~g~-~ll~aL~~---~~-vvVSfp~ksl~Grs~gm~---~~--------------Y~~~~e~~~~~~g~~~~~  268 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNS---PN-IVVTFPTKSLGQRSKGMF---QN--------------YSQSFESQARERSCRIQR  268 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSC---SE-EEEEEECC-------CHH---HH--------------HHHHHHHHHHHHTCCEEE
T ss_pred             hhhhhhHHHH-HHHHHhCC---CC-EEEeccchhhcCCCcchh---hH--------------HHHHHHHHHHhcCCceee
Confidence            9888765666 89999999   44 555444321111111010   01              267889999999985544


Q ss_pred             E
Q 043623          345 I  345 (359)
Q Consensus       345 ~  345 (359)
                      +
T Consensus       269 ~  269 (281)
T 3lcv_B          269 L  269 (281)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.06  E-value=3.8e-11  Score=105.73  Aligned_cols=146  Identities=11%  Similarity=0.062  Sum_probs=85.7

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCC--------ceEEe-CCCCCCCC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDN--------LKFIA-GDMNQSIP  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~r--------v~~~~-~d~~~~~~  251 (359)
                      .++..+. ....+.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+        +.+.. .|+..+. 
T Consensus        27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  103 (232)
T 3opn_A           27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR-  103 (232)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC-
T ss_pred             HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC-
Confidence            3444444 12345799999999999999999873 249999999 677665432 233        33322 2222211 


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhhhcCCcccCHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMTCVPGIERSEKE  330 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~t~~e  330 (359)
                       +|.+.+..++.++     ..+|++++++|+|   ||++++.-  .+.....      ...... -..........+.++
T Consensus       104 -~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~~e~~------~~~~~~~G~~~d~~~~~~~~~~  166 (232)
T 3opn_A          104 -PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQFEAG------REQVGKNGIIRDPKVHQMTIEK  166 (232)
T ss_dssp             -CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHHHHSC------HHHHC-CCCCCCHHHHHHHHHH
T ss_pred             -CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--CcccccC------HHHhCcCCeecCcchhHHHHHH
Confidence             3444444444333     4679999999999   99998842  1000000      000000 000000011237889


Q ss_pred             HHHHHHhcCCceeeEEec
Q 043623          331 WERLFFDAGFTSYKITPL  348 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~  348 (359)
                      +.++++++||++..+...
T Consensus       167 l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          167 VLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             HHHHHHHHTEEEEEEEEC
T ss_pred             HHHHHHHCCCEEEEEEEc
Confidence            999999999999888654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.06  E-value=1.3e-10  Score=108.77  Aligned_cols=95  Identities=17%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCC------chHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CC--------CCccE
Q 043623          193 DGLSSLVEVGGG------TGSFARIISEA-FPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SI--------PSADA  255 (359)
Q Consensus       193 ~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~--------~~~D~  255 (359)
                      .++.+|||||||      +|..+..++++ +|+.+++++|+ +.+..   ..++|+|+.+|+.+ ++        ..||+
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl  291 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI  291 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence            456899999999      77777777765 59999999999 55532   36799999999998 43        34999


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      |++.. .|++.+  ..+.|++++++|||   ||.+++.|..
T Consensus       292 Visdg-sH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~  326 (419)
T 3sso_A          292 VIDDG-SHINAH--VRTSFAALFPHVRP---GGLYVIEDMW  326 (419)
T ss_dssp             EEECS-CCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred             EEECC-cccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence            99864 466544  46889999999999   8988888765

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.06  E-value=1.8e-10  Score=107.14  Aligned_cols=102  Identities=17%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCceEEe
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-----------------TDNLKFIA  243 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-----------------~~rv~~~~  243 (359)
                      .++..++  ..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++                 .++++++.
T Consensus        96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3455554  667889999999999999999998 58889999999 777766543                 26899999


Q ss_pred             CCCCCC---CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          244 GDMNQS---IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       244 ~d~~~~---~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +|+.+.   ++  .||+|++..     +++.  .+++++.+.|+|   ||++++....
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~~  221 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVVN  221 (336)
T ss_dssp             SCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEESS
T ss_pred             CChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeCC
Confidence            999872   33  399999843     2221  368999999999   9999877653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.05  E-value=4.7e-10  Score=103.99  Aligned_cols=97  Identities=12%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      ..++.+|||||||+|.++..++++ +..+++++|..++++.+++       .++|+++.+|+.+ +.+  .||+|++..+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            345689999999999999998886 4458999999666665543       4689999999998 565  4999998865


Q ss_pred             hccCC-hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          262 FHDYD-DEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .+.+. ......++..+.+.|+|   ||.++.
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~  143 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred             hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence            44432 22245789999999999   888763

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.05  E-value=3e-10  Score=104.79  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=80.3

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~  251 (359)
                      .++..+.  ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.+++      ..+++++.+|+.+..   .
T Consensus        66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            4455544  56788999999999999999999887 478999999 777776653      356999999998732   2


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .||+|++..++|+++        +++.+.|+|   ||++++...
T Consensus       144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~  176 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN  176 (317)
T ss_dssp             CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred             CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence            499999999999877        356778999   899888643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.04  E-value=1.8e-10  Score=102.28  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC--------------CCCCceEEeCCCCCC----CC-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP--------------ETDNLKFIAGDMNQS----IP-  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~--------------~~~rv~~~~~d~~~~----~~-  251 (359)
                      .+++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++              ...+++++.+|+.+.    ++ 
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            34668999999999999999999999999999998 66765442              125799999999862    32 


Q ss_pred             -CccEEEecchhccCChhHH-----------HHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 -SADAFLFKLIFHDYDDEVC-----------LKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~-----------~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       .+|.|++.     ++++..           ..+++++.+.|+|   ||.+++.
T Consensus       127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~  172 (246)
T 2vdv_E          127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI  172 (246)
T ss_dssp             TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred             cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence             37777643     233211           3789999999999   8988884

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.04  E-value=4.2e-10  Score=99.34  Aligned_cols=98  Identities=14%  Similarity=0.147  Sum_probs=77.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C---------
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I---------  250 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~---------  250 (359)
                      ..++.+|||||||+|..+..+++..| ..+++++|. +.+++.+++       .++|+++.+|+.+  + .         
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            34678999999999999999999987 689999999 777766653       3569999999765  2 1         


Q ss_pred             --------CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          251 --------PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       251 --------~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                              ..||+|++....     +....+++++.+.|+|   ||.+++.+...
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~  184 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKP---GGLLIADNVLW  184 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred             cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence                    459999987543     3345789999999999   88888866544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.03  E-value=6.9e-10  Score=102.24  Aligned_cols=103  Identities=8%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C-CC-CccEEEec-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S-IP-SADAFLFK-  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~-~~-~~D~i~~~-  259 (359)
                      ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      ..+|+++.+|+.+ + .+ .||+|++. 
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            56778999999999999999999875 479999999 777766653      3479999999987 3 23 59999983 


Q ss_pred             -----chhcc-------CChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          260 -----LIFHD-------YDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       260 -----~vlh~-------~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                           .+++.       |+.++.       .++|+++.+.|||   ||++++.....
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~  249 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL  249 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence                 23432       222221       4889999999999   89888766543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.02  E-value=1.3e-10  Score=96.58  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCC-------CCccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSI-------PSADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~-------~~~D~i~~~~  260 (359)
                      ++.+|||+|||+|.++..+++..++  ++++|+ +.+++.+++     ..+++++.+|+.+..       ..||+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5689999999999999999998765  999999 778877664     228999999987621       1599999998


Q ss_pred             hhccCChhHHHHHHHHHH--HhcCCCCCCceEEEEeee
Q 043623          261 IFHDYDDEVCLKLLKNCR--EAVASSDGREKVIIVDIV  296 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~--~~L~p~~~gG~lli~e~~  296 (359)
                      .+| ...+   ++++.+.  +.|+|   ||.+++....
T Consensus       119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~  149 (171)
T 1ws6_A          119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK  149 (171)
T ss_dssp             CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred             CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence            876 2333   3355555  99999   8888776554

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.02  E-value=1.7e-10  Score=99.71  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC-CCccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-PSADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-~~~D~i~~~~  260 (359)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++       .++|+++.+|..+  +. ++||+|++..
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  134 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC  134 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence            3568999999999999999999988 789999999 778777653       3579999999865  32 2299998873


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      .     ......+++++.+.|+|   ||.+++.+...
T Consensus       135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~  163 (210)
T 3c3p_A          135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR  163 (210)
T ss_dssp             T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred             C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence            2     12345789999999999   88887766544

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.00  E-value=1.1e-09  Score=98.27  Aligned_cols=97  Identities=10%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CceEE--eCCCCC-CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--TD------NLKFI--AGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~--~~------rv~~~--~~d~~~-~~~~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..+++.   .+++++|+.+++..+++  ..      +|.++  .+|+.+ +...||+|++..
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence            566789999999999999999887   58999999555433322  12      68999  999987 533599999986


Q ss_pred             hhccCChh----H-HHHHHHHHHHhcCCCCCCc--eEEEEee
Q 043623          261 IFHDYDDE----V-CLKLLKNCREAVASSDGRE--KVIIVDI  295 (359)
Q Consensus       261 vlh~~~d~----~-~~~iL~~~~~~L~p~~~gG--~lli~e~  295 (359)
                      . +..++.    . ...+|+.+.++|+|   ||  .+++..+
T Consensus       149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~  186 (265)
T 2oxt_A          149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL  186 (265)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred             c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence            6 443322    1 22479999999999   89  7777444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.00  E-value=1.8e-09  Score=101.03  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC--CCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI--PSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~--~~~D~i~~~~  260 (359)
                      +.++.+|||+|||+|.+++.++... |+.+++++|+ +.+++.+++      .++|+++.+|+.+ +.  +.||+|+++-
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence            5677899999999999999999987 8899999999 788877664      2389999999998 43  3589999965


Q ss_pred             hhccCC--hhH----HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          261 IFHDYD--DEV----CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       261 vlh~~~--d~~----~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .++...  ...    -..+++.+++.|+|   ||+++++..
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~  318 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL  318 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            443211  111    25789999999999   999988643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.99  E-value=3.5e-10  Score=95.52  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-----CCCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-----IPSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-----~~~~D~i~  257 (359)
                      .++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++       .++++++.+|+.+  +     ...||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            4568999999999999999888 45679999999 778877664       2579999999877  2     23599999


Q ss_pred             ecchhccCChhHHHHHHHHH--HHhcCCCCCCceEEEEeeec
Q 043623          258 FKLIFHDYDDEVCLKLLKNC--REAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~--~~~L~p~~~gG~lli~e~~~  297 (359)
                      +...+|....+   .+++.+  .+.|+|   ||.+++.....
T Consensus       122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~~~  157 (187)
T 2fhp_A          122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETDKT  157 (187)
T ss_dssp             ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred             ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeCCc
Confidence            98876643333   445555  788999   88887765543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.99  E-value=7.6e-10  Score=94.39  Aligned_cols=104  Identities=11%  Similarity=0.283  Sum_probs=76.1

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCC-----------
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSI-----------  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~-----------  250 (359)
                      .++.+.+. .++++.+|||+|||+|.++..++++  ..+++++|+.++    ....+++++.+|+.+..           
T Consensus        14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            34555554 2467889999999999999999987  679999999543    12468999999998731           


Q ss_pred             ---CCccEEEecchhccC---------ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          251 ---PSADAFLFKLIFHDY---------DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       251 ---~~~D~i~~~~vlh~~---------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                         ..||+|++.......         ..+....+|+.+.+.|+|   ||++++..+
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~  140 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF  140 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence               369999986432111         112235789999999999   898876544

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.99  E-value=1.7e-10  Score=96.87  Aligned_cols=98  Identities=8%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-CCccEEEecc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-PSADAFLFKL  260 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-~~~D~i~~~~  260 (359)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++       .++++++.+|+.+  + . ..||+|++..
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            45689999999999999999987 6679999999 778877653       2579999999876  2 2 2499999987


Q ss_pred             hhccCChhHHHHHHHHHH--HhcCCCCCCceEEEEeeec
Q 043623          261 IFHDYDDEVCLKLLKNCR--EAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~--~~L~p~~~gG~lli~e~~~  297 (359)
                      .+|.   ....++++.+.  +.|+|   ||.+++.....
T Consensus       109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~~  141 (177)
T 2esr_A          109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDKT  141 (177)
T ss_dssp             SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred             CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECCc
Confidence            6543   22345566666  88999   88887765543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.99  E-value=1.5e-09  Score=92.40  Aligned_cols=97  Identities=15%  Similarity=0.282  Sum_probs=73.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCceEE-eCCCCC-C--------CC-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS---------IKCSVLELPHVIADLPETDNLKFI-AGDMNQ-S--------IP-  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~i~~a~~~~rv~~~-~~d~~~-~--------~~-  251 (359)
                      +.++.+|||||||+|.++..+++..+.         .+++++|+.++.    ...+++++ .+|+.+ +        .+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG   95 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence            466789999999999999999999765         799999985421    13578999 999876 2        22 


Q ss_pred             -CccEEEecchhccC----ChhH-----HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 -SADAFLFKLIFHDY----DDEV-----CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 -~~D~i~~~~vlh~~----~d~~-----~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                       .||+|++...+|..    .+..     ...+++++.+.|+|   ||++++...
T Consensus        96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~  146 (196)
T 2nyu_A           96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW  146 (196)
T ss_dssp             GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence             49999986654431    2221     14789999999999   899888654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.99  E-value=3.9e-10  Score=100.24  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-------CCc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-------PSA  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-------~~~  253 (359)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++       .++|+++.+|..+  + .       ..|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            4568999999999999999999987 789999999 777766653       3689999999875  2 2       359


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|++...     ......+++.+.+.|+|   ||.+++.+...
T Consensus       158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred             EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence            99998643     22346789999999999   89888766543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.98  E-value=1.1e-09  Score=98.87  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CceEE--eCCCCC-CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--TD------NLKFI--AGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~--~~------rv~~~--~~d~~~-~~~~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..++++   .+++++|+.+++..+++  ..      +|.++  .+|+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~  156 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI  156 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence            456789999999999999999987   58999999555433322  11      78999  999987 533599999987


Q ss_pred             hhccCChh----H-HHHHHHHHHHhcCCCCCCc--eEEEEee
Q 043623          261 IFHDYDDE----V-CLKLLKNCREAVASSDGRE--KVIIVDI  295 (359)
Q Consensus       261 vlh~~~d~----~-~~~iL~~~~~~L~p~~~gG--~lli~e~  295 (359)
                      . +...+.    . ..++|+.+.++|+|   ||  .+++..+
T Consensus       157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~  194 (276)
T 2wa2_A          157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL  194 (276)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred             C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence            6 443221    1 22479999999999   89  7777443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.97  E-value=3.3e-10  Score=97.39  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C--CCceEEeCCCCC--CC---CC-ccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------T--DNLKFIAGDMNQ--SI---PS-ADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~--~rv~~~~~d~~~--~~---~~-~D~i~~  258 (359)
                      ++.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.+++      .  ++++++.+|+.+  +.   .. ||+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            468999999999999999877643 58999999 788877764      2  689999999876  21   36 999999


Q ss_pred             cchhccCChhHHHHHHHHH--HHhcCCCCCCceEEEEeeec
Q 043623          259 KLIFHDYDDEVCLKLLKNC--REAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~--~~~L~p~~~gG~lli~e~~~  297 (359)
                      ...+| ..+  ..++++.+  .+.|+|   ||.+++.....
T Consensus       132 ~~~~~-~~~--~~~~l~~~~~~~~Lkp---gG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFH-FNL--AEQAISLLCENNWLKP---NALIYVETEKD  166 (201)
T ss_dssp             CCCSS-SCH--HHHHHHHHHHTTCEEE---EEEEEEEEESS
T ss_pred             CCCCC-Ccc--HHHHHHHHHhcCccCC---CcEEEEEECCC
Confidence            88755 333  45678888  557999   88887765543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.97  E-value=1e-09  Score=102.98  Aligned_cols=94  Identities=16%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCCC-ccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIPS-ADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~~-~D~i~~~~vlh~  264 (359)
                      ++++|||||||+|.++...+++.. .+|+++|..++++.|++       .++|+++.+|+.+ ..|. +|+|++...-+.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence            468999999999999987777644 38999998656555543       6889999999998 6664 999988543333


Q ss_pred             CChh-HHHHHHHHHHHhcCCCCCCceEE
Q 043623          265 YDDE-VCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       265 ~~d~-~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      ...+ ....++....+.|+|   ||.++
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp---~G~~i  186 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKE---GGLLL  186 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred             ccccchhhhHHHHHHhhCCC---CceEC
Confidence            3322 245678888899999   78765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.96  E-value=1.2e-09  Score=98.49  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=80.5

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SI  250 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~  250 (359)
                      .++..++  ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++         .++++++.+|+.+ ++
T Consensus        90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            4555555  667889999999999999999996 57889999999 777766543         3589999999987 44


Q ss_pred             C--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          251 P--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       251 ~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +  .||+|++.     .++..  .+|+++.++|+|   ||++++..+.
T Consensus       168 ~~~~~D~v~~~-----~~~~~--~~l~~~~~~L~p---gG~l~~~~~~  205 (280)
T 1i9g_A          168 PDGSVDRAVLD-----MLAPW--EVLDAVSRLLVA---GGVLMVYVAT  205 (280)
T ss_dssp             CTTCEEEEEEE-----SSCGG--GGHHHHHHHEEE---EEEEEEEESS
T ss_pred             CCCceeEEEEC-----CcCHH--HHHHHHHHhCCC---CCEEEEEeCC
Confidence            3  49999982     33332  679999999999   9999987753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.96  E-value=1.8e-09  Score=94.25  Aligned_cols=93  Identities=20%  Similarity=0.150  Sum_probs=76.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCC----
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-----PSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSI----  250 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~----  250 (359)
                      ..++.+|||||||+|.++..+++..     |+.+++++|. +.+++.+++           .++++++.+|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4567899999999999999999986     5789999999 777776653           258999999998743    


Q ss_pred             ---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          251 ---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       251 ---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                         ..||+|++...+|++        ++++.+.|+|   ||++++.-.
T Consensus       158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~  194 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE  194 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence               249999999988764        4667889999   898888654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.96  E-value=9.9e-10  Score=99.02  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-CC-CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-IP-SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-~~-~~D~i~~~~vl  262 (359)
                      +.++.+|||+|||+|.++..+++..+..+++++|+ +.+++.+++      ..++.++.+|+.+. .+ .||+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            45678999999999999999999988889999999 788877664      35789999999873 32 49999987643


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                            ...+++..+.+.|+|   ||.+++.+....+
T Consensus       197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~  224 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK  224 (272)
T ss_dssp             ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred             ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence                  234678999999999   8998887776543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.95  E-value=2.5e-09  Score=93.06  Aligned_cols=95  Identities=7%  Similarity=0.024  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~  264 (359)
                      .++.+|||||||+|-++..+.   |..+++++|+ +.+++.++.     ..+..+..+|... +.+ .||++++.-++|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            467899999999999999887   8899999999 778877664     5677889999998 555 4999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +.+++....+ ++.+.|++    ++++|.=+
T Consensus       181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP  206 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNT----PRMAVSFP  206 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence            9877655555 88889998    45555544

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.94  E-value=6.4e-10  Score=97.27  Aligned_cols=98  Identities=11%  Similarity=0.121  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSA  253 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~  253 (359)
                      ..++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++       .++++++.+|+.+  + .      ..|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            34678999999999999999999887 789999999 777766653       3689999999865  1 1      459


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|++...     ......+++++.+.|+|   ||.+++.+...
T Consensus       147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~  182 (229)
T 2avd_A          147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW  182 (229)
T ss_dssp             EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred             cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence            99998643     23346789999999999   88888876554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.94  E-value=7.4e-10  Score=96.94  Aligned_cols=92  Identities=15%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCCC--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP------SIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSIP--  251 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~~--  251 (359)
                      ..++.+|||||||+|.++..+++..+      ..+++++|+ +.+++.+++           .++++++.+|..++++  
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            45678999999999999999998654      368999998 777776653           2589999999987443  


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                       .||+|++...+|++.        +++.+.|+|   ||++++.-
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~  194 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV  194 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence             499999999998765        567888999   88887754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.94  E-value=3.9e-09  Score=93.26  Aligned_cols=100  Identities=16%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCC-C--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSI-P--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~-~--  251 (359)
                      .++...+  ..++.+|||+|||+|.++..+++.  ..+++++|. +.+++.+++       .++++++.+|+.+.. +  
T Consensus        82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            3444444  567789999999999999999998  679999998 777776653       378999999998844 3  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      .||+|++.     .++.  ..+++++.+.|+|   ||++++..+.
T Consensus       158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  192 (248)
T 2yvl_A          158 IFHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT  192 (248)
T ss_dssp             CBSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred             cccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence            49999973     3333  3669999999999   9999987753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.93  E-value=1.7e-09  Score=99.00  Aligned_cols=95  Identities=13%  Similarity=0.171  Sum_probs=70.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCceEEeC-CCCC-CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-----PHVIADLPE----TDNLKFIAG-DMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~i~~a~~----~~rv~~~~~-d~~~-~~~~~D~i~~~~  260 (359)
                      +.++.+|||||||+|.++..++++   .+++++|+     +..++.+..    .++|+++.+ |+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            466789999999999999999987   47999998     434433221    267999999 9887 544699999976


Q ss_pred             hhc---cCChhH-HHHHHHHHHHhcCCCCCCceEEE
Q 043623          261 IFH---DYDDEV-CLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       261 vlh---~~~d~~-~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .++   ...+.. ...+|+.++++|+|   ||.+++
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~  189 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  189 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence            653   222222 22679999999999   897766

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.92  E-value=3.6e-11  Score=106.26  Aligned_cols=136  Identities=14%  Similarity=0.086  Sum_probs=95.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC-CCccEEEecchhc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI-PSADAFLFKLIFH  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~-~~~D~i~~~~vlh  263 (359)
                      ++.+|||+|||+|.++..+++..  .+++++|+ +.+++.+++       .++++++.+|+.+ +. ..||+|++...+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            57899999999999999999974  79999999 778877664       2589999999987 42 2599999999998


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                      +.++..  ..+.+++++|+|   ||.+++ +.........            .   ..-.+....+++..++...|...+
T Consensus       156 ~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~~~~~~------------~---~~lp~~~~~~~~~~~l~~~g~~~i  214 (241)
T 3gdh_A          156 GPDYAT--AETFDIRTMMSP---DGFEIF-RLSKKITNNI------------V---YFLPRNADIDQVASLAGPGGQVEI  214 (241)
T ss_dssp             SGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHHHCSCE------------E---EEEETTBCHHHHHHTTCTTCCEEE
T ss_pred             Ccchhh--hHHHHHHhhcCC---cceeHH-HHHHhhCCce------------E---EECCCCCCHHHHHHHhccCCCEEE
Confidence            877654  357789999999   887443 2211000000            0   001122367788888888776666


Q ss_pred             eEEecCCcc
Q 043623          344 KITPLLGLR  352 (359)
Q Consensus       344 ~~~~~~~~~  352 (359)
                      +.....+..
T Consensus       215 ~~~~~~~~~  223 (241)
T 3gdh_A          215 EQNFLNNKL  223 (241)
T ss_dssp             EEEEETTEE
T ss_pred             EehhhcCcc
Confidence            555554433

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.92  E-value=7.7e-10  Score=100.44  Aligned_cols=102  Identities=25%  Similarity=0.381  Sum_probs=75.4

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~  252 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++       .++++++.+|+.+ +++.
T Consensus        18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~   93 (285)
T 1zq9_A           18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   93 (285)
T ss_dssp             HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence            44555555  5677899999999999999999984  48999999 777766543       2589999999998 7778


Q ss_pred             ccEEEecchhccCChhHHHHHHHH--------------H--HHhcCCCCCCceEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKN--------------C--REAVASSDGREKVI  291 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~--------------~--~~~L~p~~~gG~ll  291 (359)
                      ||+|+++ ..+++..+...++|..              +  +.+++|   ||+++
T Consensus        94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y  144 (285)
T 1zq9_A           94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY  144 (285)
T ss_dssp             CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred             hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence            9998885 3445555544455532              2  458899   88653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.91  E-value=9.9e-10  Score=96.96  Aligned_cols=97  Identities=15%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-------CC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-------PS  252 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-------~~  252 (359)
                      ..++.+|||||||+|..+..+++..| +.+++++|+ +++++.+++       .++|+++.+|..+  + .       ..
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            34578999999999999999999987 789999999 777766653       4579999999875  2 2       35


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ||+|++...     ......+++.+.+.|+|   ||.+++.+..
T Consensus       148 fD~I~~d~~-----~~~~~~~l~~~~~~L~p---GG~lv~d~~~  183 (237)
T 3c3y_A          148 YDFGFVDAD-----KPNYIKYHERLMKLVKV---GGIVAYDNTL  183 (237)
T ss_dssp             EEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred             cCEEEECCc-----hHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence            999997632     23456889999999999   8877665543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.91  E-value=4.4e-10  Score=111.79  Aligned_cols=101  Identities=13%  Similarity=0.195  Sum_probs=80.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C--CCceEEeCCCCC---CCC--CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T--DNLKFIAGDMNQ---SIP--SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~--~rv~~~~~d~~~---~~~--~~D~i~~~  259 (359)
                      +.++.+|||||||.|.++..|++.  +.+|+|+|. +.+++.|+.    .  -+|+|..++..+   ..+  .||+|++.
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            346789999999999999999997  568999999 778877653    2  468999999876   232  49999999


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      .+|||.+++....-+..+.+.|++   +++.++.....
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~  176 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAV  176 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCC
T ss_pred             cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecc
Confidence            999999988755556677788887   67777765543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.91  E-value=5.6e-10  Score=98.20  Aligned_cols=98  Identities=12%  Similarity=0.158  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSAD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~D  254 (359)
                      .++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++       .++|+++.+|+.+  + .      ..||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            3568999999999999999999987 789999999 777776653       3579999999754  1 1      4599


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      +|++...     ......+++++.+.|+|   ||.+++.+....
T Consensus       151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~  186 (232)
T 3cbg_A          151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH  186 (232)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence            9997653     23456789999999999   888887665543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.91  E-value=1e-09  Score=99.55  Aligned_cols=98  Identities=13%  Similarity=0.148  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-CC-CccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-IP-SADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~~-~~D~i~  257 (359)
                      +++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .+|++++.+|..+  + .+ .||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999999878889999999 777766542          3689999999876  1 23 499999


Q ss_pred             ecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +....+..+....  .+++++++++|+|   ||.+++.
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~  191 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ  191 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            8654333222222  5889999999999   8887765

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.91  E-value=2e-09  Score=92.22  Aligned_cols=88  Identities=15%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCCCCCccEEEecchhccCChhHH
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVC  270 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~  270 (359)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+....||+|++...+|++++...
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~  128 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD  128 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence            45689999999999999999987 5457999999 788877764 23899999999872146999999999998876544


Q ss_pred             HHHHHHHHHhc
Q 043623          271 LKLLKNCREAV  281 (359)
Q Consensus       271 ~~iL~~~~~~L  281 (359)
                      .++++++.+.+
T Consensus       129 ~~~l~~~~~~~  139 (200)
T 1ne2_A          129 RAFIDKAFETS  139 (200)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHhc
Confidence            57888888776

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.90  E-value=1.2e-09  Score=93.93  Aligned_cols=96  Identities=9%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CCC--CccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SIP--SADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~~--~~D~i~~~~vl  262 (359)
                      ++.+|||+|||+|.++..++++.. .+++++|+ +.+++.+++      .++++++.+|+.+  +.+  .||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            468999999999999999887753 38999999 788877764      2589999999876  332  49999998775


Q ss_pred             ccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeee
Q 043623          263 HDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~  296 (359)
                      | ..+  ...+++.+.+  .|+|   ||.+++....
T Consensus       133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~  162 (202)
T 2fpo_A          133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV  162 (202)
T ss_dssp             S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred             C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            5 333  3466777766  4999   8888766543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.90  E-value=8.8e-10  Score=99.51  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~  257 (359)
                      +.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++          .+|++++.+|..+  + . ..||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3568999999999999999998777789999999 777766542          4789999999876  2 2 2499999


Q ss_pred             ecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +....+..+...  ..++++.++++|+|   ||.+++.
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~  188 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            965443322111  24789999999999   7877664

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.89  E-value=2.9e-09  Score=92.96  Aligned_cols=93  Identities=12%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCC---CCccE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSI---PSADA  255 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~---~~~D~  255 (359)
                      ..++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++           .++++++.+|+....   ..||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            4567899999999999999999885 6679999999 777776653           258999999987632   24999


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      |++...++++.        +++.+.|+|   ||++++...
T Consensus       155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~  183 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG  183 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred             EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence            99998886544        567889999   898888644

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.89  E-value=1.3e-09  Score=100.42  Aligned_cols=99  Identities=10%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC--C--CCCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ--S--IPSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~--~--~~~~D~i  256 (359)
                      +.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++           .+|++++.+|..+  +  ...||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            4568999999999999999999878889999999 777765542           3689999999876  2  2359999


Q ss_pred             Eecchhcc---CChhH--HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          257 LFKLIFHD---YDDEV--CLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       257 ~~~~vlh~---~~d~~--~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      ++....|.   -+...  ..+++++++++|+|   ||.+++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence            99866544   11111  25789999999999   88888764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.89  E-value=8.3e-09  Score=99.67  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~  258 (359)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++      ..+|+++.+|+.+ +  ++  .||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            566789999999999999999999887 79999999 666665543      3579999999987 3  44  3999996


Q ss_pred             ------cchhccCChh-------HH-------HHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          259 ------KLIFHDYDDE-------VC-------LKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       259 ------~~vlh~~~d~-------~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                            ..+++..++.       +.       .++|+++.+.|||   ||++++......
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~  393 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF  393 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence                  3455544432       11       4789999999999   899988776543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.89  E-value=1.1e-09  Score=101.38  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CC--CCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SI--PSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~--~~~D~i  256 (359)
                      ..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .+||+++.+|+.+   ..  ..||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4568999999999999999999888889999999 778776653          3689999999765   22  249999


Q ss_pred             EecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          257 LFKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       257 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ++....+....+.  ..++++.++++|+|   ||.+++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9864421111111  35789999999999   8877764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.88  E-value=1.3e-09  Score=98.83  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCceEEeCCCCC---CCCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----------------ETDNLKFIAGDMNQ---SIPS  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----------------~~~rv~~~~~d~~~---~~~~  252 (359)
                      ..+.+|||||||+|.++..+++. |..+++++|+ +.+++.++                ..+|++++.+|..+   ....
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            45689999999999999999998 8889999999 77766543                24689999999765   1235


Q ss_pred             ccEEEecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||+|++....+..+...  ..++++++++.|+|   ||.+++.
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~  192 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ  192 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            99999865543222222  25789999999999   8877765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.88  E-value=1.1e-09  Score=100.53  Aligned_cols=99  Identities=16%  Similarity=0.126  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C--CCCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S--IPSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~--~~~~D~i~  257 (359)
                      +.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .+|++++.+|..+  +  ...||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            4568999999999999999999878889999999 777766542          3689999999876  2  23599999


Q ss_pred             ecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEEe
Q 043623          258 FKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       258 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +...-+.-++...  .+++++++++|+|   ||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence            8654322222221  5889999999999   88777654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.88  E-value=9.5e-10  Score=100.69  Aligned_cols=99  Identities=14%  Similarity=0.088  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~  257 (359)
                      ..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++          .+|++++.+|..+  + . ..||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999888889999999 777766543          4789999999865  2 2 2499999


Q ss_pred             ecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          258 FKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       258 ~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +....+..+..  ...+++++++++|+|   ||.+++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence            86544322211  124689999999999   88777654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.87  E-value=1.5e-09  Score=100.20  Aligned_cols=97  Identities=13%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCC---C-CCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQS---I-PSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~---~-~~~D~i~  257 (359)
                      +.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++          .+|++++.+|..+.   . ..||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            3568999999999999999999878889999999 777766542          36899999998662   2 2499999


Q ss_pred             ecchhccCC-hhHH--HHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYD-DEVC--LKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~-d~~~--~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +...- .+. ....  .++++++++.|+|   ||.+++.
T Consensus       195 ~d~~~-p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  229 (321)
T 2pt6_A          195 VDSSD-PIGPAETLFNQNFYEKIYNALKP---NGYCVAQ  229 (321)
T ss_dssp             EECCC-SSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCcC-CCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            86432 222 1111  5889999999999   7877764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.86  E-value=4.2e-09  Score=94.29  Aligned_cols=89  Identities=10%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCCCCCccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQSIPSADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~~~~~D~i~~~~v  261 (359)
                      +.+.+|||||||+|..+..+++. + .+++++|+ +.+++.+++          .+|++++.+|..+-...||+|++.  
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d--  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL--  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence            35689999999999999999998 7 89999999 888888765          358999999988733569999986  


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                         .+++.  .+++.+++.|+|   ||.+++.
T Consensus       147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~  170 (262)
T 2cmg_A          147 ---QEPDI--HRIDGLKRMLKE---DGVFISV  170 (262)
T ss_dssp             ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred             ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence               23332  489999999999   8877774

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.85  E-value=5.7e-09  Score=93.88  Aligned_cols=120  Identities=14%  Similarity=0.122  Sum_probs=89.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC-CCccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI-PSADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~-~~~D~i~~~~v  261 (359)
                      ..++.+|||+|||+|.+++.+++. ...+++++|+ |.+++.+++       .++|+++.+|..+ .. ..||.|++...
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence            457899999999999999999987 4468999999 777776653       6889999999988 32 24999988643


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      .      ....+|..+.+.|+|   ||.|.+.+....+....                      ...+.++++.++.|++
T Consensus       202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~~----------------------~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMPR----------------------EPFETFKRITKEYGYD  250 (278)
T ss_dssp             S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTTT----------------------TTHHHHHHHHHHTTCE
T ss_pred             C------cHHHHHHHHHHHcCC---CCEEEEEeeecccccch----------------------hHHHHHHHHHHHcCCc
Confidence            2      124678888999999   88887776654332111                      1456678888899987


Q ss_pred             ee
Q 043623          342 SY  343 (359)
Q Consensus       342 ~~  343 (359)
                      +.
T Consensus       251 v~  252 (278)
T 3k6r_A          251 VE  252 (278)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.85  E-value=1.2e-08  Score=87.72  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchhccCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIFHDYD  266 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~  266 (359)
                      .++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++     .-+++++.+|+.+-...||+|++.-.+|...
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence            4568999999999999999998743 37999999 777776653     1279999999987223699999998888876


Q ss_pred             hhHHHHHHHHHHHhc
Q 043623          267 DEVCLKLLKNCREAV  281 (359)
Q Consensus       267 d~~~~~iL~~~~~~L  281 (359)
                      .....++++.+.+.+
T Consensus       127 ~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          127 KHADRPFLLKAFEIS  141 (207)
T ss_dssp             TTTTHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHhc
Confidence            544567888888877

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.82  E-value=2.1e-09  Score=98.14  Aligned_cols=98  Identities=12%  Similarity=0.146  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~  257 (359)
                      +.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .+|++++.+|+.+  + . ..||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            3458999999999999999999878889999999 777765542          4689999999765  2 2 2499999


Q ss_pred             ecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +...-+.....   ...++++++++.|+|   ||.+++.
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  204 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  204 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            85332201111   125789999999999   8877774

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.81  E-value=9.1e-09  Score=96.94  Aligned_cols=120  Identities=18%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      .++.+|||+|||+|.++..++...+..+++++|+ +.+++.+++       .++|+++.+|+.+ +.+  .||+|+++-.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP  295 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP  295 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence            5678999999999999999999988779999999 788877764       2589999999998 543  4999999755


Q ss_pred             hccCC-----hhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623          262 FHDYD-----DEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF  335 (359)
Q Consensus       262 lh~~~-----d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll  335 (359)
                      ++...     .++ -.++++.+++.| +    |+++++..                               +.+.+++.+
T Consensus       296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~~  339 (373)
T 3tm4_A          296 YGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEAI  339 (373)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHHH
T ss_pred             CCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHHH
Confidence            43221     111 256888999988 5    44444322                               345567788


Q ss_pred             HhcCCceeeEEec
Q 043623          336 FDAGFTSYKITPL  348 (359)
Q Consensus       336 ~~aGf~~~~~~~~  348 (359)
                      ++.||+..+...+
T Consensus       340 ~~~G~~~~~~~~~  352 (373)
T 3tm4_A          340 AENGFEIIHHRVI  352 (373)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHcCCEEEEEEEE
Confidence            9999999888777

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.81  E-value=1.5e-08  Score=93.85  Aligned_cols=98  Identities=14%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CceEEeCCCCC--C-----CCCccEEE
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TD-NLKFIAGDMNQ--S-----IPSADAFL  257 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~-rv~~~~~d~~~--~-----~~~~D~i~  257 (359)
                      ++.+|||+|||+|.++..+++...  +++++|+ +.+++.+++       .+ +++++.+|+++  +     ...||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            467999999999999999999644  9999999 778877654       22 59999999987  2     23599999


Q ss_pred             ecchhccC--------ChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          258 FKLIFHDY--------DDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       258 ~~~vlh~~--------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      +.-.....        ..+...++++.+.+.|+|   ||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence            94321110        012346889999999999   8987776554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.79  E-value=4.9e-09  Score=95.77  Aligned_cols=97  Identities=21%  Similarity=0.332  Sum_probs=70.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~~  253 (359)
                      ..+++...  ..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++      .++++++.+|+.+ +.+.|
T Consensus        32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~  107 (299)
T 2h1r_A           32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF  107 (299)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence            44555554  566789999999999999999987  458999999 777766553      3689999999998 67789


Q ss_pred             cEEEecchhccCChhHHHHHH---------------HHHHHhcCC
Q 043623          254 DAFLFKLIFHDYDDEVCLKLL---------------KNCREAVAS  283 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL---------------~~~~~~L~p  283 (359)
                      |+|+++ ..+++..+...++|               ..+.+.+++
T Consensus       108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~  151 (299)
T 2h1r_A          108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN  151 (299)
T ss_dssp             SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred             CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence            999875 44557666666666               346677877

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.77  E-value=2e-08  Score=90.92  Aligned_cols=116  Identities=9%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             cCCCCeEEEEcC------CchHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCceE-EeCCCCC-CCC-CccEEEecch
Q 043623          192 FDGLSSLVEVGG------GTGSFARIISEAFP-SIKCSVLELPHVIADLPETDNLKF-IAGDMNQ-SIP-SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~i~~a~~~~rv~~-~~~d~~~-~~~-~~D~i~~~~v  261 (359)
                      ++++.+|||+||      |+|.  ..+++..| +.+++++|+.+.+      .++++ +.+|+.+ +.+ .||+|++...
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~  132 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY  132 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence            567789999999      5577  44566666 6899999994332      47999 9999988 544 4999998643


Q ss_pred             hcc-----CC----hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          262 FHD-----YD----DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       262 lh~-----~~----d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      .+.     .+    .+....+|+.+++.|||   ||++++..+...                            ...++.
T Consensus       133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~  181 (290)
T 2xyq_A          133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY  181 (290)
T ss_dssp             CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence            221     01    12245789999999999   898888543210                            234667


Q ss_pred             HHHHhcCCceeeEE
Q 043623          333 RLFFDAGFTSYKIT  346 (359)
Q Consensus       333 ~ll~~aGf~~~~~~  346 (359)
                      +++++.||..+++.
T Consensus       182 ~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          182 KLMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHTTEEEEEEEEE
T ss_pred             HHHHHcCCcEEEEE
Confidence            78888888877665

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.77  E-value=8.4e-09  Score=93.00  Aligned_cols=104  Identities=12%  Similarity=0.104  Sum_probs=76.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C------CCCccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S------IPSADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~------~~~~D~i  256 (359)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++      ..+++++.+|+.+ +      ...||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            456789999999999999999998877 79999999 667765543      3489999999876 2      2359999


Q ss_pred             Eec------chhcc---CChh-------HHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          257 LFK------LIFHD---YDDE-------VCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       257 ~~~------~vlh~---~~d~-------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      ++.      .+++.   |+.+       .-.++|+++.+.|||   ||++++......
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~  215 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSME  215 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCC
Confidence            986      23321   1111       125789999999999   898887665443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.72  E-value=3.9e-08  Score=93.97  Aligned_cols=97  Identities=15%  Similarity=0.064  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-C-CCccEEEecchhcc----
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-I-PSADAFLFKLIFHD----  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-~-~~~D~i~~~~vlh~----  264 (359)
                      .+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+   .+++++.+|+++. . ..||+|+++--...    
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence            345699999999999999999987 6789999999 7777766   6899999999883 2 35999999622211    


Q ss_pred             ------CChhHH-----------------HHHHHHHHHhcCCCCCCceEEEEee
Q 043623          265 ------YDDEVC-----------------LKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       265 ------~~d~~~-----------------~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                            ++++..                 ..+++++.+.|+|   ||+++++-+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p  165 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP  165 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence                  222221                 2568999999999   898887655

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.71  E-value=1.7e-08  Score=97.16  Aligned_cols=102  Identities=9%  Similarity=0.067  Sum_probs=76.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~  259 (359)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++      .. |.++.+|+.+ +  .+ .||+|++.
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            456789999999999999999998865 68999999 777766653      33 8999999876 3  23 49999961


Q ss_pred             ------chhc-------cCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          260 ------LIFH-------DYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       260 ------~vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                            .+++       .|+.+..       .++|+.+.+.|||   ||+|+......
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~  232 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF  232 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence                  2222       2333222       5789999999999   88887765543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.69  E-value=2.5e-08  Score=88.36  Aligned_cols=88  Identities=17%  Similarity=0.334  Sum_probs=62.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC-cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS-AD  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~-~D  254 (359)
                      ..+++.+.  ..++.+|||||||+|.++..++++.  .+++++|+ +.+++.+++    .++++++.+|+.+ +++. .+
T Consensus        20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~   95 (244)
T 1qam_A           20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS   95 (244)
T ss_dssp             HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence            34555554  5567899999999999999999986  68999999 777766543    4689999999988 6652 33


Q ss_pred             EEEecchhccCChhHHHHH
Q 043623          255 AFLFKLIFHDYDDEVCLKL  273 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~i  273 (359)
                      ..++++..++++.+...++
T Consensus        96 ~~vv~nlPy~~~~~~l~~~  114 (244)
T 1qam_A           96 YKIFGNIPYNISTDIIRKI  114 (244)
T ss_dssp             CEEEEECCGGGHHHHHHHH
T ss_pred             eEEEEeCCcccCHHHHHHH
Confidence            3555555555544333333

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.69  E-value=1.5e-08  Score=94.40  Aligned_cols=99  Identities=10%  Similarity=0.121  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPS-----IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~~D~i~~~~  260 (359)
                      +..+|||+|||+|.++..+++..+.     .+++++|+ +.+++.++.     ..++.++.+|.+++.+  .||+|+++-
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL  209 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence            4579999999999999999988764     68999999 777776653     3368999999988433  599999998


Q ss_pred             hhccCChhHH----------------HHHHHHHHHhcCCCCCCceEEEEee
Q 043623          261 IFHDYDDEVC----------------LKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       261 vlh~~~d~~~----------------~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .++.++.++.                ..+++++.+.|+|   ||+++++-+
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p  257 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP  257 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence            7766654432                2579999999999   898887664

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.66  E-value=9.3e-09  Score=91.13  Aligned_cols=103  Identities=17%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC---C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP---S  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~---~  252 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++    .++++++.+|+.+ +++   .
T Consensus        19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~   94 (245)
T 1yub_A           19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence            45666665  5667899999999999999999985  68999999 778887765    3689999999998 654   2


Q ss_pred             ccEEEecchhccCChhHHHHHH--------------HHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLL--------------KNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL--------------~~~~~~L~p~~~gG~lli~  293 (359)
                      |  .++++..++.+.+....++              +.+.+.|+|   ||++.++
T Consensus        95 f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~  144 (245)
T 1yub_A           95 Y--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL  144 (245)
T ss_dssp             E--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred             c--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence            6  3444444444443333333              568899999   8887664

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.64  E-value=7e-08  Score=92.59  Aligned_cols=104  Identities=12%  Similarity=0.113  Sum_probs=79.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--CC--CccEEEe--
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--IP--SADAFLF--  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~~--~~D~i~~--  258 (359)
                      ..++.+|||+|||+|..+..+++..|+.+++++|+ +..++.+++     .-+++++.+|+.+ +  ++  .||+|++  
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            45678999999999999999999998889999998 666655442     3358899999987 3  33  4999986  


Q ss_pred             ----cchhccCChh-------HH-------HHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          259 ----KLIFHDYDDE-------VC-------LKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       259 ----~~vlh~~~d~-------~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                          ..++++.++.       +.       .++|+++.+.|||   ||++++......
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~  378 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL  378 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence                2344443331       11       4789999999999   899888776543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.61  E-value=1.2e-07  Score=91.95  Aligned_cols=102  Identities=17%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec--
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK--  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~--  259 (359)
                      ++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      ..+|+++.+|+.+ +  .+ .||+|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            678999999999999999999875 479999999 677766553      3579999999987 3  33 49999972  


Q ss_pred             ----chhc-------cCChhH-------HHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          260 ----LIFH-------DYDDEV-------CLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       260 ----~vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                          .+++       +|+.+.       -.++|+++.+.|||   ||+|++......
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~  250 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN  250 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence                2332       233322       13689999999999   898887665443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.60  E-value=3.6e-08  Score=94.71  Aligned_cols=103  Identities=11%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~  259 (359)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++      ..+|.++.+|..+ +  .+ .||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            566789999999999999999998654 68999999 667665543      4579999999876 2  33 49999873


Q ss_pred             c------hhcc-------CChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          260 L------IFHD-------YDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       260 ~------vlh~-------~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      -      ++..       |+.+..       .++|+.+.+.|||   ||+|+......
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~  237 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF  237 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence            2      2221       221111       2789999999999   88887765544

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.58  E-value=9e-08  Score=86.88  Aligned_cols=82  Identities=15%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC--c
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS--A  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~--~  253 (359)
                      ..++....  ..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++    .++++++.+|+.+ ++++  |
T Consensus        40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f  115 (295)
T 3gru_A           40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF  115 (295)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred             HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence            44555555  567789999999999999999998  468999999 777777654    4789999999998 6664  9


Q ss_pred             cEEEecchhccCChh
Q 043623          254 DAFLFKLIFHDYDDE  268 (359)
Q Consensus       254 D~i~~~~vlh~~~d~  268 (359)
                      |+|+++-. ++++.+
T Consensus       116 D~Iv~NlP-y~is~p  129 (295)
T 3gru_A          116 NKVVANLP-YQISSP  129 (295)
T ss_dssp             SEEEEECC-GGGHHH
T ss_pred             cEEEEeCc-ccccHH
Confidence            99986643 344443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.53  E-value=8.1e-08  Score=89.14  Aligned_cols=94  Identities=16%  Similarity=0.212  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~D~i~~~~vlh~  264 (359)
                      .++.+|||+|||+|.++.. ++  ...+++++|+ +.+++.+++       .++++++.+|+++....||+|++.-.-  
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~--  268 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK--  268 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence            4678999999999999999 77  4679999999 778776654       368999999998843569999985321  


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                          ...++++.+.+.|+|   ||.+++.+....
T Consensus       269 ----~~~~~l~~~~~~L~~---gG~l~~~~~~~~  295 (336)
T 2yx1_A          269 ----FAHKFIDKALDIVEE---GGVIHYYTIGKD  295 (336)
T ss_dssp             ----TGGGGHHHHHHHEEE---EEEEEEEEEESS
T ss_pred             ----hHHHHHHHHHHHcCC---CCEEEEEEeecC
Confidence                123679999999999   888888777644

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.48  E-value=5.5e-08  Score=91.95  Aligned_cols=99  Identities=11%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CceEEeCCCCC--C-C----CCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TD-NLKFIAGDMNQ--S-I----PSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~-rv~~~~~d~~~--~-~----~~~D~i  256 (359)
                      .++.+|||+|||+|.++..+++... .+++++|+ +.+++.+++       .+ +++++.+|+++  + .    ..||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            4568999999999999999998632 38999999 778777654       23 89999999876  2 1    259999


Q ss_pred             Eecchh-----ccCC--hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          257 LFKLIF-----HDYD--DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       257 ~~~~vl-----h~~~--d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ++.-..     +...  .....++++.+.+.|+|   ||.+++...
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~~  332 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIASTN  332 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            985322     1222  12234678889999999   787766543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.46  E-value=1.1e-07  Score=90.22  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-----CCCccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-----IPSADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-----~~~~D~i~~  258 (359)
                      ++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++       .++++++.+|+++  +     ...||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            6789999999999999999986 3458999999 778776654       2389999999876  2     125999998


Q ss_pred             cchhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          259 KLIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       259 ~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      .-..+..+.       .....++.++.+.|+|   ||.+++....
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~  337 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS  337 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence            532222111       3356789999999999   8888776653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.46  E-value=3.2e-07  Score=81.30  Aligned_cols=90  Identities=22%  Similarity=0.363  Sum_probs=65.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCCC-c-cE
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIPS-A-DA  255 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~~-~-D~  255 (359)
                      ..+++.+.  ..++.+|||||||+|.++..++++ +..+++++|+ +.+++.+++  ..+++++.+|+.+ ++++ + +.
T Consensus        21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~   97 (249)
T 3ftd_A           21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL   97 (249)
T ss_dssp             HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred             HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence            34555555  566789999999999999999987 4578999999 778777654  4689999999998 6653 2 45


Q ss_pred             EEecchhccCChhHHHHHH
Q 043623          256 FLFKLIFHDYDDEVCLKLL  274 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL  274 (359)
                      +++.+..++.+.+-..++|
T Consensus        98 ~vv~NlPy~i~~~il~~ll  116 (249)
T 3ftd_A           98 KVVGNLPYNVASLIIENTV  116 (249)
T ss_dssp             EEEEECCTTTHHHHHHHHH
T ss_pred             EEEEECchhccHHHHHHHH
Confidence            6667766665554333333

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.46  E-value=2.1e-07  Score=88.31  Aligned_cols=99  Identities=7%  Similarity=-0.060  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CceEEeCCCCC--C-----CCCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------T-D-NLKFIAGDMNQ--S-----IPSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~-~-rv~~~~~d~~~--~-----~~~~D~i  256 (359)
                      .++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++      . . +++++.+|+++  +     ...||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            456899999999999999999864 358999999 778776653      2 3 79999999887  2     1259999


Q ss_pred             EecchhccCC-------hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          257 LFKLIFHDYD-------DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       257 ~~~~vlh~~~-------d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ++.-.....+       .....+++.++.+.|+|   ||.+++...
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  340 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFSC  340 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            9863221110       13356889999999999   787776553

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.44  E-value=2.9e-07  Score=87.07  Aligned_cols=99  Identities=9%  Similarity=0.016  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC-CccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP-SADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~-~~D~i~~~~vl  262 (359)
                      .++.+|||+|||+|.++..+++..  .+++++|+ +.+++.+++     .-...+..+|+++   ..+ .||+|++.-..
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT  290 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred             cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence            447899999999999999999974  45999999 778877664     2223567888876   122 39999986432


Q ss_pred             ccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          263 HDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ...+.       ..-.++++.+.+.|+|   ||.++++...
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s  328 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS  328 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence            11111       1234789999999999   8988866654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.44  E-value=1.4e-07  Score=89.17  Aligned_cols=97  Identities=7%  Similarity=0.008  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-----CCCccEEEec
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-----IPSADAFLFK  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-----~~~~D~i~~~  259 (359)
                      ++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      ..+++++.+|+++  +     -..||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            5679999999999999999998  568999999 778877654      2459999999886  2     1259999985


Q ss_pred             chhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          260 LIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       260 ~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -..+..+.       ....+++..+.+.|+|   ||.+++...
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  326 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC  326 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence            32211111       3345789999999999   888877665

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.43  E-value=3.7e-07  Score=86.33  Aligned_cols=103  Identities=8%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS--------------------------------------IKCSVLEL-PHVIAD  232 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~i~~  232 (359)
                      +.+...|||.+||+|.++++.+....+                                      .+++++|+ +.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            567789999999999999988875443                                      56999999 788877


Q ss_pred             CCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc-CC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          233 LPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD-YD-DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       233 a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      |+.       .++|+++.+|+.+ +.+ .||+|+++--.+. .. .++...+.+.+.+.|++ -+|++++|+..
T Consensus       279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~  351 (393)
T 3k0b_A          279 AKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEEEEEC
T ss_pred             HHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEEEEEC
Confidence            653       4579999999998 444 5999999844322 12 24455677777777765 34788888654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.43  E-value=9.8e-07  Score=84.68  Aligned_cols=90  Identities=11%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC-----C--CccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI-----P--SADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~-----~--~~D~i~  257 (359)
                      ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++      ..+++|+.+|+.+..     +  .||+|+
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv  361 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  361 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence            456789999999999999999987  568999999 778877653      358999999998732     1  499999


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      +.---     ..+..+++.+.+ ++|   ++.+++
T Consensus       362 ~dPPr-----~g~~~~~~~l~~-~~p---~~ivyv  387 (433)
T 1uwv_A          362 LDPAR-----AGAAGVMQQIIK-LEP---IRIVYV  387 (433)
T ss_dssp             ECCCT-----TCCHHHHHHHHH-HCC---SEEEEE
T ss_pred             ECCCC-----ccHHHHHHHHHh-cCC---CeEEEE
Confidence            84322     112234555543 678   444444

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.42  E-value=6.1e-06  Score=77.11  Aligned_cols=149  Identities=17%  Similarity=0.218  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCchHHHHHH--------HHHC-------CCCeEEEeechHH--------HhcCCC-----------CCC--
Q 043623          195 LSSLVEVGGGTGSFARII--------SEAF-------PSIKCSVLELPHV--------IADLPE-----------TDN--  238 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------i~~a~~-----------~~r--  238 (359)
                      ..+|+|+|||+|..+..+        .+++       |.+++..-|+|.-        +...++           ..+  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999999887        2233       7889999998531        122111           011  


Q ss_pred             -ceEEeCCCCC-CCC--CccEEEecchhccCChh------------------------------------HHHHHHHHHH
Q 043623          239 -LKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE------------------------------------VCLKLLKNCR  278 (359)
Q Consensus       239 -v~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~------------------------------------~~~~iL~~~~  278 (359)
                       +.-+.+.|.. .+|  ++|+|+++.+||-.++.                                    +...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2235667776 566  49999999999976511                                    3345799999


Q ss_pred             HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-hh----hh-hhhc-------------CCcccCHHHHHHHHH-hc
Q 043623          279 EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-DA----LM-MTCV-------------PGIERSEKEWERLFF-DA  338 (359)
Q Consensus       279 ~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~----~~-~~~~-------------~g~~~t~~e~~~ll~-~a  338 (359)
                      +.|+|   ||++++.-...++....... .....+ +.    +. +...             .--.++.+|++++++ +.
T Consensus       213 ~eL~p---GG~mvl~~~gr~~~~~~~~~-~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~  288 (374)
T 3b5i_A          213 AEVKR---GGAMFLVCLGRTSVDPTDQG-GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG  288 (374)
T ss_dssp             HHEEE---EEEEEEEEEECCCSSTTCCH-HHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred             HHhCC---CCEEEEEEecCCCCcccccc-chhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence            99999   89988877765543211100 001111 11    10 1111             122368999999998 58


Q ss_pred             CCceeeEEe
Q 043623          339 GFTSYKITP  347 (359)
Q Consensus       339 Gf~~~~~~~  347 (359)
                      ||++.++.-
T Consensus       289 ~F~I~~le~  297 (374)
T 3b5i_A          289 SFAIDKLVV  297 (374)
T ss_dssp             SEEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            999877654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.40  E-value=1.1e-06  Score=82.68  Aligned_cols=103  Identities=13%  Similarity=0.101  Sum_probs=78.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS--------------------------------------IKCSVLEL-PHVIAD  232 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~i~~  232 (359)
                      +.+...|+|.+||+|.++++.+....+                                      .+++++|+ +.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            567789999999999999998875443                                      56999999 788877


Q ss_pred             CCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc-C-ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          233 LPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD-Y-DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       233 a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ++.       .++|+++.+|+.+ +.+ .||+|+++--.+. . ..++...+.+.+.+.|++ -+|++++|+-.
T Consensus       272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~  344 (384)
T 3ldg_A          272 ARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEEEEES
T ss_pred             HHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEEEEEC
Confidence            653       4679999999998 444 5999998844322 2 235566788888888875 44888888754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.40  E-value=4.2e-07  Score=81.45  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC---Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP---SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~---~~  253 (359)
                      ..+++...  ..++ +|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..+++++.+|+.+ +++   .+
T Consensus        37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence            34555555  5666 99999999999999999985  58999999 777766543   4689999999998 655   36


Q ss_pred             cEEEecchhccCChhHHHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKN  276 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~  276 (359)
                      |.|+ ++..++.+.+-..++|..
T Consensus       112 ~~iv-~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          112 SLLV-ANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EEEE-EEECSSCCHHHHHHHHHH
T ss_pred             cEEE-ecCcccccHHHHHHHhcC
Confidence            6654 555666776655566654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.38  E-value=5.7e-07  Score=89.31  Aligned_cols=126  Identities=16%  Similarity=0.178  Sum_probs=85.8

Q ss_pred             hhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc--cCCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEeechHH
Q 043623          156 IWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI--FDGLSSLVEVGGGTGSFARIISEAF----PSIKCSVLELPHV  229 (359)
Q Consensus       156 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~~~  229 (359)
                      -|+-+++|+-.-..|.+++..      .+.......  ..+...|+|||||+|-++...+++.    -++++.+++-.++
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~  396 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYK------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN  396 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred             hhhhhcCChhhHHHHHHHHHH------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            477788888777777777542      222222211  1234579999999999955444432    2347899997444


Q ss_pred             HhcCCC-------CCCceEEeCCCCC-CCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceE
Q 043623          230 IADLPE-------TDNLKFIAGDMNQ-SIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKV  290 (359)
Q Consensus       230 i~~a~~-------~~rv~~~~~d~~~-~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~l  290 (359)
                      ...+++       .++|+++.+|+.+ ..|+ +|+|++-..=+....|-...+|....+.|||   ||.+
T Consensus       397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim  463 (637)
T 4gqb_A          397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS  463 (637)
T ss_dssp             HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence            444332       7899999999999 7775 9999887654445555566778888889999   7754

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.38  E-value=2.6e-07  Score=89.03  Aligned_cols=100  Identities=14%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------C--CCceEEeCCCCC-C
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF-------------PSIKCSVLEL-PHVIADLPE------T--DNLKFIAGDMNQ-S  249 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~i~~a~~------~--~rv~~~~~d~~~-~  249 (359)
                      .+..+|+|.|||+|.++..+.+..             +..+++|+|+ +.+++.|+.      .  .++.++.+|.+. +
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~  249 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  249 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence            456799999999999999988763             4568999999 777766542      1  278899999988 4


Q ss_pred             CC-CccEEEecchhccCChh---------------HHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          250 IP-SADAFLFKLIFHDYDDE---------------VCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       250 ~~-~~D~i~~~~vlh~~~d~---------------~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .. .||+|+++-.++.....               .-..+++++.+.|+|   ||++.++-+
T Consensus       250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p  308 (445)
T 2okc_A          250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  308 (445)
T ss_dssp             CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence            33 59999998666542211               124789999999999   999987764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.34  E-value=3.5e-07  Score=83.23  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--C--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--I--  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~--  250 (359)
                      ..+++.+.  ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.+++     .++++++.+|+.+ +  .  
T Consensus        16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~   93 (301)
T 1m6y_A           16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   93 (301)
T ss_dssp             HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence            45566555  56778999999999999999999999889999999 788877653     3689999999876 3  1  


Q ss_pred             ---CCccEEEecc
Q 043623          251 ---PSADAFLFKL  260 (359)
Q Consensus       251 ---~~~D~i~~~~  260 (359)
                         ..||.|++.-
T Consensus        94 ~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           94 LGIEKVDGILMDL  106 (301)
T ss_dssp             TTCSCEEEEEEEC
T ss_pred             cCCCCCCEEEEcC
Confidence               3599998754

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.34  E-value=2.9e-07  Score=81.89  Aligned_cols=81  Identities=16%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC----
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP----  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~----  251 (359)
                      ..+++...  ..++.+|||||||+|.++..++++.  .+++++|+ +.+++.+++    .++++++.+|+.+ +++    
T Consensus        19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~   94 (255)
T 3tqs_A           19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT   94 (255)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence            34555555  5677899999999999999999974  58999999 778776654    4789999999998 553    


Q ss_pred             --CccEEEecchhccCChh
Q 043623          252 --SADAFLFKLIFHDYDDE  268 (359)
Q Consensus       252 --~~D~i~~~~vlh~~~d~  268 (359)
                        .+|  +.++.-++.+.+
T Consensus        95 ~~~~~--vv~NlPY~is~~  111 (255)
T 3tqs_A           95 DKPLR--VVGNLPYNISTP  111 (255)
T ss_dssp             SSCEE--EEEECCHHHHHH
T ss_pred             CCCeE--EEecCCcccCHH
Confidence              255  444544444443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.34  E-value=1.4e-07  Score=85.04  Aligned_cols=69  Identities=22%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~~  252 (359)
                      ..+++.+.  ..++.+|||||||+|.++..++++.+.  .+++++|+ +.+++.+++  .++++++.+|+.+ ++++
T Consensus        32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            34555554  567789999999999999999998653  55999999 778877764  4789999999998 6654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.31  E-value=9.6e-07  Score=83.33  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=76.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS--------------------------------------IKCSVLEL-PHVIAD  232 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~i~~  232 (359)
                      +.++.+|||.+||+|.++++.+....+                                      .+++++|+ +.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            566789999999999999998876432                                      57999999 788887


Q ss_pred             CCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc-CC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          233 LPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD-YD-DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       233 a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      |+.       .++|++..+|+.+ +.+ .||+|+++--... +. .++..++.+.+.+.|++ -+|++++|+..
T Consensus       273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~  345 (385)
T 3ldu_A          273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEEEEES
T ss_pred             HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEEEEEC
Confidence            764       3579999999998 444 4999999755432 22 34456777777777765 33788877654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.28  E-value=7.4e-06  Score=76.66  Aligned_cols=149  Identities=15%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHH-----------------CCCCeEEEeech-----------HH-HhcCC----CCCCceE
Q 043623          195 LSSLVEVGGGTGSFARIISEA-----------------FPSIKCSVLELP-----------HV-IADLP----ETDNLKF  241 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-i~~a~----~~~rv~~  241 (359)
                      ..+|+|+||++|..+..+...                 .|.++++.-|+|           +. .+.++    ...+-.|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999999987665                 477889999986           11 11110    1123344


Q ss_pred             ---EeCCCCC-CCC--CccEEEecchhccCChh-------------------------HHH------------HHHHHHH
Q 043623          242 ---IAGDMNQ-SIP--SADAFLFKLIFHDYDDE-------------------------VCL------------KLLKNCR  278 (359)
Q Consensus       242 ---~~~d~~~-~~~--~~D~i~~~~vlh~~~d~-------------------------~~~------------~iL~~~~  278 (359)
                         +.+.|.. .+|  ++|+++++.+||-.++.                         .+.            .+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4456666 566  49999999999865422                         122            2378889


Q ss_pred             HhcCCCCCCceEEEEeeecCCC--CCCchHHHHHHHhhhhhhh--------hc--CCcccCHHHHHHHHHhcC-CceeeE
Q 043623          279 EAVASSDGREKVIIVDIVVNEK--KDKPEITEAKLLYDALMMT--------CV--PGIERSEKEWERLFFDAG-FTSYKI  345 (359)
Q Consensus       279 ~~L~p~~~gG~lli~e~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~--~g~~~t~~e~~~ll~~aG-f~~~~~  345 (359)
                      +.|+|   ||++++.-...++.  .....-.....+.++....        ..  .-..++.+|++++++++| |++.++
T Consensus       213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            99999   89888877765553  2110000111122211110        01  123468999999999985 787765


Q ss_pred             E
Q 043623          346 T  346 (359)
Q Consensus       346 ~  346 (359)
                      .
T Consensus       290 e  290 (384)
T 2efj_A          290 E  290 (384)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.25  E-value=1.1e-05  Score=74.31  Aligned_cols=143  Identities=10%  Similarity=0.084  Sum_probs=105.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCceEEeCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---------------------------TDNLKFIAGD  245 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---------------------------~~rv~~~~~d  245 (359)
                      .+...||.+|||.......+...+|+++++-+|.|++++.-++                           .++.+++..|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3568999999999999999999888999999999988754321                           3789999999


Q ss_pred             CCC-CC----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh
Q 043623          246 MNQ-SI----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY  313 (359)
Q Consensus       246 ~~~-~~----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~  313 (359)
                      +.+ ++          ++ ..++++-.+|++++.+++.++|+.+.+.+ |   +|.+++.|.+.+.....+ +... ...
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~~-fg~~-m~~  249 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPNDR-FGAI-MQS  249 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTCC-HHHH-HHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcch-HHHH-HHH
Confidence            987 32          12 67889999999999999999999999988 5   688889999877332221 2110 111


Q ss_pred             hhhh-hhh--cC-CcccCHHHHHHHHHhcCCc
Q 043623          314 DALM-MTC--VP-GIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       314 ~~~~-~~~--~~-g~~~t~~e~~~ll~~aGf~  341 (359)
                      .+.- ...  .+ ....+.++..+.|.++||+
T Consensus       250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            1111 101  11 2345899999999999997

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.24  E-value=2e-06  Score=82.10  Aligned_cols=90  Identities=11%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-CccEEEecchhcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SADAFLFKLIFHD  264 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~D~i~~~~vlh~  264 (359)
                      .++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      .+ ++|+.+|+++..+ .||+|++.-.-..
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG  365 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence            45689999999999999999986  458999999 788877764      23 8999999998433 6999998543211


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ...    .+++.+. .|+|   +|.+++.
T Consensus       366 ~~~----~~~~~l~-~l~p---~givyvs  386 (425)
T 2jjq_A          366 LHP----RLVKRLN-REKP---GVIVYVS  386 (425)
T ss_dssp             SCH----HHHHHHH-HHCC---SEEEEEE
T ss_pred             hHH----HHHHHHH-hcCC---CcEEEEE
Confidence            111    3455554 4899   7766664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.23  E-value=1.5e-06  Score=88.22  Aligned_cols=98  Identities=11%  Similarity=0.101  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCC--C-C-CCccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQ--S-I-PSADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~--~-~-~~~D~i~~~  259 (359)
                      .++.+|||+|||+|.++..+++... .+++++|+ +.+++.+++       . ++++++.+|+++  + . ..||+|++.
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            3578999999999999999988543 36999999 778877654       2 589999999987  2 2 259999985


Q ss_pred             chhc--------cCC-hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          260 LIFH--------DYD-DEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       260 ~vlh--------~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      --..        .+. ...-.++++.+.+.|+|   ||.+++..
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~  657 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN  657 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence            3211        111 12345789999999999   88777543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.23  E-value=5.8e-07  Score=79.78  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC-c-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS-A-  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~-~-  253 (359)
                      ..+++.+.  ..++.+|||||||+|.++. +. +.+..+++++|+ +.+++.+++    .++++++.+|+.+ ++++ + 
T Consensus        11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~   86 (252)
T 1qyr_A           11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred             HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence            44555554  5667899999999999999 64 444444999999 788877654    2589999999988 5543 2 


Q ss_pred             ----cEEEecchhccCChhHHHHHH
Q 043623          254 ----DAFLFKLIFHDYDDEVCLKLL  274 (359)
Q Consensus       254 ----D~i~~~~vlh~~~d~~~~~iL  274 (359)
                          +.++.++..++.+.+-..+++
T Consensus        87 ~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           87 KMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             ccCCceEEEECCCCCccHHHHHHHH
Confidence                356666666665554444444

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.21  E-value=6.2e-06  Score=65.68  Aligned_cols=86  Identities=16%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             cCCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC----CccEEEecchhccC
Q 043623          192 FDGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP----SADAFLFKLIFHDY  265 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~----~~D~i~~~~vlh~~  265 (359)
                      ..++.+|||||||+| ..+..|++. .++.+++.|+ |..++         ++..|+|+|..    +||+|...+     
T Consensus        33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----   97 (153)
T 2k4m_A           33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----   97 (153)
T ss_dssp             SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred             CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence            445689999999999 688888874 4678999998 55555         88999999644    699998876     


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      ++.+.+..+.++.+..     |.-++|.-...
T Consensus        98 PP~El~~~i~~lA~~v-----~adliI~pL~~  124 (153)
T 2k4m_A           98 PPAEIHSSLMRVADAV-----GARLIIKPLTG  124 (153)
T ss_dssp             CCTTTHHHHHHHHHHH-----TCEEEEECBTT
T ss_pred             CCHHHHHHHHHHHHHc-----CCCEEEEcCCC
Confidence            4455666677777766     56677765443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.20  E-value=1.9e-06  Score=77.67  Aligned_cols=97  Identities=11%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCC----CCccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSI----PSADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~----~~~D~i  256 (359)
                      +.+++||-||+|.|..+.++++..|..+++.+|+ +.+++.+++           .+|++++.+|..+-.    ..||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            5679999999999999999999877779999999 778876543           689999999998722    249999


Q ss_pred             EecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          257 LFKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       257 ~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +.-..= .....   -...+++.++++|+|   ||.++..
T Consensus       162 i~D~~d-p~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q  197 (294)
T 3o4f_A          162 ISDCTD-PIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ  197 (294)
T ss_dssp             EESCCC-CCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEeCCC-cCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence            875421 11111   123679999999999   7766654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.19  E-value=2e-06  Score=76.49  Aligned_cols=130  Identities=21%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 043623          194 GLSSLVEVGGGTGSFARIISEA-------FPS-----IKCSVLEL-P---HVIADL-----------P------------  234 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~i~~a-----------~------------  234 (359)
                      +..+|||||+|+|..+..+++.       .|+     ++++.+|. |   +.+..+           +            
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999999887664       674     58899996 4   222110           0            


Q ss_pred             ------C--CCCceEEeCCCCC--C-CC-----CccEEEecc-hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          235 ------E--TDNLKFIAGDMNQ--S-IP-----SADAFLFKL-IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       235 ------~--~~rv~~~~~d~~~--~-~~-----~~D~i~~~~-vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                            .  ..+++++.+|+.+  + .+     .||+|++-. .....++-.-..+|+.+.+.|+|   ||.++....  
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tysa--  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFTS--  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESCC--
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEeC--
Confidence                  1  2457789999866  2 22     499999853 11111111124689999999999   887764211  


Q ss_pred             CCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623          298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY  358 (359)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~  358 (359)
                                                    ...+++.|.++||++.++...+.-..++.+.
T Consensus       215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~  245 (257)
T 2qy6_A          215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGV  245 (257)
T ss_dssp             ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEE
T ss_pred             ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEE
Confidence                                          1235677888999987765555545555554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.17  E-value=4.6e-06  Score=73.72  Aligned_cols=110  Identities=8%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HVIADLPE----TDNLKFIAGDMNQ-SIP--SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~i~~a~~----~~rv~~~~~d~~~-~~~--~~  253 (359)
                      .++.++..  +++..+|||+|||+|.++..++++.+-.+++++|+. +.......    ..++..+..++.. .++  .+
T Consensus        64 ~ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  141 (277)
T 3evf_A           64 RWFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC  141 (277)
T ss_dssp             HHHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence            34444432  677789999999999999998887665567777763 22111111    1245555555432 333  49


Q ss_pred             cEEEecchhc---cCChh-HHHHHHHHHHHhcCCCCCC-ceEEEEeeec
Q 043623          254 DAFLFKLIFH---DYDDE-VCLKLLKNCREAVASSDGR-EKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh---~~~d~-~~~~iL~~~~~~L~p~~~g-G~lli~e~~~  297 (359)
                      |+|++....+   ++-|. ....+|+.+.+.|+|   | |.+++ ..+.
T Consensus       142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~  186 (277)
T 3evf_A          142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA  186 (277)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred             cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence            9999987665   12222 223568999999999   8 87776 4443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.16  E-value=2.3e-06  Score=84.98  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             hhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHH----C---------CCCeEE
Q 043623          156 IWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA----F---------PSIKCS  222 (359)
Q Consensus       156 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~---------p~~~~~  222 (359)
                      .|+-+++|+-.-..|.+++...      +...+. ...+...|||||||+|-++...+++    .         ...+++
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~a------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy  450 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVGA------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY  450 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHH------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             HHHHHcCChhhHHHHHHHHHHH------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence            4677777877777777765421      111111 0123468999999999997543222    1         234899


Q ss_pred             Eeec-hHHHhcCC-----C-CCCceEEeCCCCC-CC------C-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCC
Q 043623          223 VLEL-PHVIADLP-----E-TDNLKFIAGDMNQ-SI------P-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR  287 (359)
Q Consensus       223 ~~D~-~~~i~~a~-----~-~~rv~~~~~d~~~-~~------~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g  287 (359)
                      ++|- +.++..++     . .++|+++.+|+.+ ..      + .+|+|++-..=.....|-....|..+.+.|+|   |
T Consensus       451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~  527 (745)
T 3ua3_A          451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---T  527 (745)
T ss_dssp             EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---T
T ss_pred             EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---C
Confidence            9998 43332221     1 6889999999998 44      3 49999988765444555556778888899999   7


Q ss_pred             ceEE
Q 043623          288 EKVI  291 (359)
Q Consensus       288 G~ll  291 (359)
                      |.++
T Consensus       528 Gi~i  531 (745)
T 3ua3_A          528 TISI  531 (745)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            7543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.13  E-value=2.5e-06  Score=75.95  Aligned_cols=71  Identities=10%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCceEEeCCCCC--C-C---
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P-------HVIADLPE-------TDNLKFIAGDMNQ--S-I---  250 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~i~~a~~-------~~rv~~~~~d~~~--~-~---  250 (359)
                      ..++.+|||+|||+|..+..+++.  +.+++++|+ +       ++++.+++       .+||+++.+|+.+  + +   
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            445679999999999999999986  568999999 7       66766653       3579999999876  2 3   


Q ss_pred             -CCccEEEecchhcc
Q 043623          251 -PSADAFLFKLIFHD  264 (359)
Q Consensus       251 -~~~D~i~~~~vlh~  264 (359)
                       ..||+|++.-.+++
T Consensus       159 ~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HCCCSEEEECCCC--
T ss_pred             CCCccEEEECCCCCC
Confidence             35999999755543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.00  E-value=3.9e-05  Score=71.19  Aligned_cols=149  Identities=15%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH----------------CCCCeEEEeechH-----HHhcCCC---CCCceE---EeCCC
Q 043623          194 GLSSLVEVGGGTGSFARIISEA----------------FPSIKCSVLELPH-----VIADLPE---TDNLKF---IAGDM  246 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-----~i~~a~~---~~rv~~---~~~d~  246 (359)
                      ...+|+|+||++|..+..+...                .|..+++.-|+|.     .......   ..+-.|   +.+.|
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            4468999999999877654333                5778899999852     1222211   113334   55677


Q ss_pred             CC-CCC--CccEEEecchhccCCh-------------------------------hHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          247 NQ-SIP--SADAFLFKLIFHDYDD-------------------------------EVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       247 ~~-~~~--~~D~i~~~~vlh~~~d-------------------------------~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .. .+|  ++|+++++.+||-.++                               .+...+|+..++.|+|   ||++++
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl  207 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL  207 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence            76 566  4999999999986543                               1234569999999999   999988


Q ss_pred             EeeecCCCCCCc----h-HH-HHHHHhhhhhhhh----------cCCcccCHHHHHHHHHhcCC-ceeeE
Q 043623          293 VDIVVNEKKDKP----E-IT-EAKLLYDALMMTC----------VPGIERSEKEWERLFFDAGF-TSYKI  345 (359)
Q Consensus       293 ~e~~~~~~~~~~----~-~~-~~~~~~~~~~~~~----------~~g~~~t~~e~~~ll~~aGf-~~~~~  345 (359)
                      .-...++.....    . .. ....+.++.....          ..-..++.+|+++++++.|+ ++.+.
T Consensus       208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~  277 (359)
T 1m6e_X          208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence            776665532110    0 00 1111111111110          11234689999999999965 66554

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.93  E-value=2.1e-06  Score=80.55  Aligned_cols=88  Identities=15%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-C--------------
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-I--------------  250 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~--------------  250 (359)
                      +.+|||+|||+|.++..+++..  .+++++|. +.+++.+++      .++++|+.+|+++  + +              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            4789999999999999998853  48999999 778877653      3589999999865  1 1              


Q ss_pred             --CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          251 --PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       251 --~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                        ..||+|++.-     |.   ..+...+.+.|++   +|+++++..
T Consensus       292 ~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~---~g~ivyvsc  327 (369)
T 3bt7_A          292 KSYQCETIFVDP-----PR---SGLDSETEKMVQA---YPRILYISC  327 (369)
T ss_dssp             GGCCEEEEEECC-----CT---TCCCHHHHHHHTT---SSEEEEEES
T ss_pred             ccCCCCEEEECc-----Cc---cccHHHHHHHHhC---CCEEEEEEC
Confidence              1589998642     11   1234455566677   788887765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.92  E-value=1.8e-05  Score=80.32  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=70.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC------------------------------------------CCCeEEEeec-hH
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF------------------------------------------PSIKCSVLEL-PH  228 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~~~~~~D~-~~  228 (359)
                      +.+...|||.+||+|.++++.+...                                          +..+++++|+ +.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            4567899999999999999887642                                          3468999999 78


Q ss_pred             HHhcCCC-------CCCceEEeCCCCC-CCC----CccEEEecchhcc-C-ChhHHHHHHHHHHHh---cCCCCCCceEE
Q 043623          229 VIADLPE-------TDNLKFIAGDMNQ-SIP----SADAFLFKLIFHD-Y-DDEVCLKLLKNCREA---VASSDGREKVI  291 (359)
Q Consensus       229 ~i~~a~~-------~~rv~~~~~d~~~-~~~----~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~~---L~p~~~gG~ll  291 (359)
                      +++.|+.       .++|++..+|+.+ ..|    .||+|+++--... + ..++...+.+.+.+.   +.|   ||+++
T Consensus       268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~---g~~~~  344 (703)
T 3v97_A          268 VIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFG---GWNLS  344 (703)
T ss_dssp             HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCT---TCEEE
T ss_pred             HHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCC---CCeEE
Confidence            8877664       4569999999987 222    5999999843321 2 233444555555444   457   89998


Q ss_pred             EEee
Q 043623          292 IVDI  295 (359)
Q Consensus       292 i~e~  295 (359)
                      |+-.
T Consensus       345 ilt~  348 (703)
T 3v97_A          345 LFSA  348 (703)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            8743

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.91  E-value=2.7e-05  Score=71.13  Aligned_cols=67  Identities=12%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-----CCccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-----PSADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-----~~~D~i~  257 (359)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++      ..+|+++.+|+.+ +.     ..||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4567899999999999999999875 5679999999 666665543      3579999999876 21     2499998


Q ss_pred             e
Q 043623          258 F  258 (359)
Q Consensus       258 ~  258 (359)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.89  E-value=7.1e-06  Score=77.10  Aligned_cols=92  Identities=9%  Similarity=0.053  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCceEEeCCCCCC--
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T-----------------DNLKFIAGDMNQS--  249 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~-----------------~rv~~~~~d~~~~--  249 (359)
                      ++.+|||+|||+|.+++.++++.+..+++++|+ +++++.+++    .                 .+++++.+|..+.  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            468999999999999999999988889999999 666655442    1                 2388999998761  


Q ss_pred             -CC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          250 -IP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       250 -~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                       .+ .||+|++.- .   ..  ...++..+.+.|+|   ||.+++..
T Consensus       127 ~~~~~fD~I~lDP-~---~~--~~~~l~~a~~~lk~---gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP-F---GS--PMEFLDTALRSAKR---RGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC-S---SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             hccCCCCEEEeCC-C---CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence             22 499999542 2   11  14678999999999   88776654

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.89  E-value=0.00018  Score=66.09  Aligned_cols=146  Identities=12%  Similarity=0.209  Sum_probs=103.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCceEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEA-FPSIKCSVLELPHVIADLP-----------------------------ETDNLKFIA  243 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~i~~a~-----------------------------~~~rv~~~~  243 (359)
                      +...|+-+|||.=.....+... .++++++-+|.|++++.-+                             ..++.+++.
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            5689999999999999988875 3678999999998865311                             157889999


Q ss_pred             CCCCC--C---------CC-C-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHH
Q 043623          244 GDMNQ--S---------IP-S-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK  310 (359)
Q Consensus       244 ~d~~~--~---------~~-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~  310 (359)
                      .|+.+  .         +. + .=++++-.+|.+++.+++.++|+.+.+..++    |.+++.|++.++.    ++.. .
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d----~fg~-~  240 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGD----RFGQ-I  240 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTS----HHHH-H
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCC----HHHH-H
Confidence            99976  1         11 1 4477888999999999999999999998865    7888889985432    1211 0


Q ss_pred             HHhhhhhhhh-cCC--cccCHHHHHHHHHhcCCceeeEEec
Q 043623          311 LLYDALMMTC-VPG--IERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       311 ~~~~~~~~~~-~~g--~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      ....+..... ..+  ...+.++..+.|.++||+.+++..+
T Consensus       241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence            0111111100 011  2347899999999999999887765

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.88  E-value=1.3e-05  Score=70.88  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEe-C-CCCC-CCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIA-G-DMNQ-SIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~-~-d~~~-~~~~~  253 (359)
                      .++.+++.  +.+..+|||+|||.|.++...++..+-.+++++|+ ......+..    ..++.... . |+.. +...+
T Consensus        80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence            45566654  77788999999999999999888777667888887 222222211    22333332 2 3333 22249


Q ss_pred             cEEEecchhccCC----hh-HHHHHHHHHHHhcCCCCCC--ceEEE
Q 043623          254 DAFLFKLIFHDYD----DE-VCLKLLKNCREAVASSDGR--EKVII  292 (359)
Q Consensus       254 D~i~~~~vlh~~~----d~-~~~~iL~~~~~~L~p~~~g--G~lli  292 (359)
                      |+|++-...+ -.    |+ ....+|.-+.+.|+|   |  |.+++
T Consensus       158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~  199 (282)
T 3gcz_A          158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI  199 (282)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred             CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence            9999987775 22    22 233578888999999   7  77766

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.77  E-value=9.2e-05  Score=67.50  Aligned_cols=144  Identities=15%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCceEEeCCCCCCCC-----------C
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP---------ETDNLKFIAGDMNQSIP-----------S  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~---------~~~rv~~~~~d~~~~~~-----------~  252 (359)
                      .+...||++|||-=.....+.. .++++++-+|.|.+++..+         ..++.+++..|+.+.+.           .
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  179 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence            3457899999998887666542 2247999999998876433         26778899999876211           1


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-h-hhhhh-----h-cCCc
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-D-ALMMT-----C-VPGI  324 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~-~~g~  324 (359)
                      .=++++..+||+++++++.++|+.+.+.+.|    |..+++|...++.. .. ........ . +.-..     . .+-.
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~  253 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGD-EW-REQMQLRFRRVSDALGFEQAVDVQELI  253 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCS-HH-HHHHHHHHHHHHC-----------CCT
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCc-ch-hHHHHHHHHHHHHHcCCcCCCCccccc
Confidence            4577888999999999999999999999888    45666676655431 10 00001011 1 00000     0 1112


Q ss_pred             c-cC-HHHHHHHHHhcCCcee
Q 043623          325 E-RS-EKEWERLFFDAGFTSY  343 (359)
Q Consensus       325 ~-~t-~~e~~~ll~~aGf~~~  343 (359)
                      . ++ .++..++|.+.||+.+
T Consensus       254 ~~~~~~~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          254 YHDENRAVVADWLNRHGWRAT  274 (310)
T ss_dssp             TCCTTCCCHHHHHTTTTEEEE
T ss_pred             cCCCChHHHHHHHHHCcCccc
Confidence            2 25 7899999999999987

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.76  E-value=1.6e-05  Score=74.84  Aligned_cols=93  Identities=8%  Similarity=0.021  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-ceEEeCCCCC--C--CC-CccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-------TDN-LKFIAGDMNQ--S--IP-SADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-------~~r-v~~~~~d~~~--~--~~-~~D~i~  257 (359)
                      .++.+|||++||+|.+++.++.+.++ .+++++|+ +.+++.+++       .++ ++++.+|.++  .  .+ .||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35689999999999999999998665 57999999 777766653       345 9999999865  2  22 499998


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +.-    +..  ...++..+.+.|+|   ||.|++..
T Consensus       131 lDP----~g~--~~~~l~~a~~~Lk~---gGll~~t~  158 (392)
T 3axs_A          131 LDP----FGT--PVPFIESVALSMKR---GGILSLTA  158 (392)
T ss_dssp             ECC----SSC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ECC----CcC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence            864    111  13578899999999   78666654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.75  E-value=4.4e-05  Score=75.13  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------CC-----CceEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP------------------SIKCSVLEL-PHVIADLPE------TD-----NLKFI  242 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~i~~a~~------~~-----rv~~~  242 (359)
                      .+..+|+|.+||+|.++..+.+...                  ..+++|+|+ +.+++.|+.      ..     ++.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            4467999999999999998876531                  247999999 666665542      22     27889


Q ss_pred             eCCCCC-C---CCCccEEEecchhccCCh------------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          243 AGDMNQ-S---IPSADAFLFKLIFHDYDD------------EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       243 ~~d~~~-~---~~~~D~i~~~~vlh~~~d------------~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .+|.+. +   .+.||+|+++--+.....            ..-..++.++.+.|+|   ||++.++-+
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p  313 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP  313 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence            999987 3   235999999754433211            1123689999999999   899987744

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.63  E-value=3.9e-05  Score=68.06  Aligned_cols=77  Identities=19%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             HHHhcccccCCC--CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHH-------HhcCC----C-C---CCceEEeCC
Q 043623          184 IIKDCKHIFDGL--SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHV-------IADLP----E-T---DNLKFIAGD  245 (359)
Q Consensus       184 l~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------i~~a~----~-~---~rv~~~~~d  245 (359)
                      +++.+.  +.++  .+|||+|||+|..+..++.+  +.+++++|. +.+       ++.++    . .   .|++++.+|
T Consensus        78 l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            444443  4455  79999999999999999998  458999999 543       33222    1 1   579999999


Q ss_pred             CCC---CCC-CccEEEecchhcc
Q 043623          246 MNQ---SIP-SADAFLFKLIFHD  264 (359)
Q Consensus       246 ~~~---~~~-~~D~i~~~~vlh~  264 (359)
                      ..+   ..+ .||+|++.-.+++
T Consensus       154 ~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          154 SLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHHHhCcccCCEEEEcCCCCC
Confidence            875   233 4999999866654

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.61  E-value=0.00021  Score=66.12  Aligned_cols=69  Identities=9%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      +.++.++||+||++|.++..++++  +.+|+++|..++-......++|+++.+|.++ ..+  .+|+|++-.+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            567899999999999999999987  5799999974443333447899999999998 322  49999987764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.52  E-value=0.00023  Score=63.38  Aligned_cols=106  Identities=12%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HHHhcCC--C--CCCc-eEEeC-CCCC-CCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HVIADLP--E--TDNL-KFIAG-DMNQ-SIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~i~~a~--~--~~rv-~~~~~-d~~~-~~~~~  253 (359)
                      .++.+. . .+.++.+|||+||++|.++..+++..+-..++++|+. .......  .  ..++ .+..+ |+.. +...+
T Consensus        71 ~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~  148 (300)
T 3eld_A           71 RWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS  148 (300)
T ss_dssp             HHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence            344444 2 3577889999999999999999987665578888873 2111111  0  2223 33333 4444 22359


Q ss_pred             cEEEecchhccCCh----h-HHHHHHHHHHHhcCCCCCC-ceEEEE
Q 043623          254 DAFLFKLIFHDYDD----E-VCLKLLKNCREAVASSDGR-EKVIIV  293 (359)
Q Consensus       254 D~i~~~~vlh~~~d----~-~~~~iL~~~~~~L~p~~~g-G~lli~  293 (359)
                      |+|++....+ -..    + ....+|.-+.+.|+|   | |.+++-
T Consensus       149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K  190 (300)
T 3eld_A          149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV---NTENFCVK  190 (300)
T ss_dssp             SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred             CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence            9999976665 221    1 224568888999999   8 877764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.49  E-value=8.3e-05  Score=66.15  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-C-------C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-S-------I  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~-------~  250 (359)
                      ..+++.+.  ..++..+||++||.|.++..++++  +.+++++|. |.+++.+++  .+|++++.+|+.+ +       .
T Consensus        12 ~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~   87 (285)
T 1wg8_A           12 QEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   87 (285)
T ss_dssp             HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCC
Confidence            67777776  667889999999999999999998  679999999 777755432  2699999999976 2       1


Q ss_pred             CCccEEEec
Q 043623          251 PSADAFLFK  259 (359)
Q Consensus       251 ~~~D~i~~~  259 (359)
                      ..+|.|++.
T Consensus        88 ~~vDgIL~D   96 (285)
T 1wg8_A           88 ERVDGILAD   96 (285)
T ss_dssp             SCEEEEEEE
T ss_pred             CCcCEEEeC
Confidence            348988874

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.49  E-value=0.00024  Score=71.86  Aligned_cols=100  Identities=10%  Similarity=0.114  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC---CCeEEEeec-hHHHhcC--C----C------CCCceEEeCCCCCC----CCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP---SIKCSVLEL-PHVIADL--P----E------TDNLKFIAGDMNQS----IPS  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~i~~a--~----~------~~rv~~~~~d~~~~----~~~  252 (359)
                      .++.+|+|.|||+|.++..+++..+   ..+++|+|+ +.+++.|  +    .      .+...+...|+..+    ...
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            3567999999999999999999876   357999999 6665554  1    0      12235555666652    225


Q ss_pred             ccEEEecchhcc-CCh-hH-------------------------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          253 ADAFLFKLIFHD-YDD-EV-------------------------CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       253 ~D~i~~~~vlh~-~~d-~~-------------------------~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ||+|+++=-.-. +.. ..                         ...++.++.+.|+|   ||++.++-+
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP  466 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP  466 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            999998744411 111 11                         22467889999999   899877654

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.45  E-value=9.3e-05  Score=68.74  Aligned_cols=96  Identities=16%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCceEEeCCCCCC-------C
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------------TDNLKFIAGDMNQS-------I  250 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------------~~rv~~~~~d~~~~-------~  250 (359)
                      .++++||-||+|.|..+.++++. |.-+++.+|+ |.+++.+++              .+|++++.+|..+-       .
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            34689999999999999999985 4478999999 778776542              35789999998651       1


Q ss_pred             CCccEEEecchhcc-------CC-hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          251 PSADAFLFKLIFHD-------YD-DEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       251 ~~~D~i~~~~vlh~-------~~-d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      ..||+|+.--.=..       .. ..-...+++.++++|+|   ||.++.
T Consensus       283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~  329 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT  329 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred             CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence            24999987532111       11 11134688999999999   776554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.43  E-value=3.7e-05  Score=72.58  Aligned_cols=66  Identities=12%  Similarity=0.183  Sum_probs=52.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCceEEeCCCCCC--C---CCccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T----DNLKFIAGDMNQS--I---PSADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~----~rv~~~~~d~~~~--~---~~~D~i~  257 (359)
                      +.++.+|||+|||+|..+..+++.  ..+++++|+ +.+++.++.    .    ++|+++.+|+.+.  .   ..||+|+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence            344789999999999999999886  458999999 777776653    1    5799999999872  2   2599999


Q ss_pred             ec
Q 043623          258 FK  259 (359)
Q Consensus       258 ~~  259 (359)
                      +.
T Consensus       169 lD  170 (410)
T 3ll7_A          169 VD  170 (410)
T ss_dssp             EC
T ss_pred             EC
Confidence            84

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.37  E-value=9.4e-05  Score=72.72  Aligned_cols=97  Identities=15%  Similarity=0.090  Sum_probs=67.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-C
Q 043623          196 SSLVEVGGGTGSFARIISEAFP---------------SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-I  250 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~  250 (359)
                      .+|+|.+||+|.++..+.+..+               ..+++|+|+ +.+++.|+.       ..++.+..+|.+. + .
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4999999999999998765432               468999999 666665542       2345558899876 3 2


Q ss_pred             C--CccEEEecchhc--cCChh-------------------------HHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          251 P--SADAFLFKLIFH--DYDDE-------------------------VCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       251 ~--~~D~i~~~~vlh--~~~d~-------------------------~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +  .||+|+++=-+.  .|..+                         .-..+++++.+.|+|   ||++.++-+
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP  396 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA  396 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence            2  499999974332  22211                         012578999999999   899877643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.37  E-value=0.00029  Score=69.17  Aligned_cols=99  Identities=14%  Similarity=0.057  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC-CCC-----CccE
Q 043623          194 GLSSLVEVGGGTGSFARIISEAF---PSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ-SIP-----SADA  255 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~-~~~-----~~D~  255 (359)
                      +..+|+|.+||+|.++..+.+..   +..+++|+|+ +.+...++.        .+++.+..+|.+. ++|     .||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            46799999999999999998875   3578999999 666665542        2467899999887 332     3999


Q ss_pred             EEecchh-ccCChh--------------------HHHHHHHHHHHhcC-CCCCCceEEEEee
Q 043623          256 FLFKLIF-HDYDDE--------------------VCLKLLKNCREAVA-SSDGREKVIIVDI  295 (359)
Q Consensus       256 i~~~~vl-h~~~d~--------------------~~~~iL~~~~~~L~-p~~~gG~lli~e~  295 (359)
                      |+++=-+ ..|...                    .-..++.++.+.|+ |   ||++.++-+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP  359 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP  359 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence            9987322 112100                    01247999999999 9   999877644

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.23  E-value=0.0012  Score=56.73  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=71.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HHHhc--C-CC--CCCceEEeC-CCCC-CCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HVIAD--L-PE--TDNLKFIAG-DMNQ-SIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~i~~--a-~~--~~rv~~~~~-d~~~-~~~~~  253 (359)
                      .++.+.+.  +.+..+|||+||++|.++..++....-.++.++|+- .-.+.  . +.  -+.|+|+.+ |++. +...+
T Consensus        68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~  145 (267)
T 3p8z_A           68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC  145 (267)
T ss_dssp             HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence            45566664  777889999999999999988887655589999982 21111  1 11  477899999 9775 32349


Q ss_pred             cEEEecchhccCC---hh-HHHHHHHHHHHhcCCCCCCceEEE
Q 043623          254 DAFLFKLIFHDYD---DE-VCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       254 D~i~~~~vlh~~~---d~-~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      |.++|--.-..-+   ++ ...++|.-+.+.|++    |.++|
T Consensus       146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~  184 (267)
T 3p8z_A          146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI  184 (267)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE
T ss_pred             cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE
Confidence            9998875542222   11 123467777888987    45555

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.11  E-value=0.0014  Score=55.58  Aligned_cols=90  Identities=12%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCCC-------------
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQS-------------  249 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~~-------------  249 (359)
                      .+..+|||||||  .-+..+++ .++.+++.+|. ++..+.+++         .++|+++.+|..+.             
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred             hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence            456899999985  55555665 45789999997 555444332         46899999985421             


Q ss_pred             -----------C---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          250 -----------I---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       250 -----------~---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                                 .   ..||+|+.-.-.       ....+..+.+.|+|   ||.| |+|.+
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~---GG~I-v~DNv  155 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITR---PVTL-LFDDY  155 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSS---CEEE-EETTG
T ss_pred             hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCC---CeEE-EEeCC
Confidence                       1   249999987621       12446667788999   6765 55543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.10  E-value=0.00014  Score=83.33  Aligned_cols=142  Identities=13%  Similarity=0.125  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCceEEeCCCCCC---CC-CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPS-----IKCSVLEL-PHVIADLPET---DNLKFIAGDMNQS---IP-SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~i~~a~~~---~rv~~~~~d~~~~---~~-~~D~i~~~~  260 (359)
                      +..+||+||.|+|..+..+++....     .+++..|. +...+.+++.   -.++....|..++   .+ .||+|++++
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            4569999999999887777666432     25777787 4555555541   1222222233332   12 499999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF  340 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf  340 (359)
                      +||..++.  .+.|+++++.|+|   ||++++.+......-..     ........  ...+....+.++|.++|+++||
T Consensus      1320 vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A         1320 ALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp             C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred             cccccccH--HHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence            99876654  4679999999999   99999887643110000     00000000  0011233477899999999999


Q ss_pred             ceeeEEe
Q 043623          341 TSYKITP  347 (359)
Q Consensus       341 ~~~~~~~  347 (359)
                      ..+....
T Consensus      1388 ~~~~~~~ 1394 (2512)
T 2vz8_A         1388 HLVALKR 1394 (2512)
T ss_dssp             EEEEEEE
T ss_pred             ceeeecc
Confidence            9876543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.10  E-value=0.0017  Score=56.54  Aligned_cols=105  Identities=11%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHH--HhcCC-CCCCc---eEEeC-CCCCCCC-Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV--IADLP-ETDNL---KFIAG-DMNQSIP-SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~--i~~a~-~~~rv---~~~~~-d~~~~~~-~~  253 (359)
                      .+|-+++  .++++.+|||+||+.|.++...++.-+-..+.+.++.-.  +.-.. ....+   .|+.+ |+++..+ .+
T Consensus        63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~  140 (269)
T 2px2_A           63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS  140 (269)
T ss_dssp             HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence            4555554  378899999999999999999888521112233333111  11111 11455   44447 9987323 59


Q ss_pred             cEEEecchhccCC----hhH-HHHHHHHHHHhcCCCCCCc-eEEE
Q 043623          254 DAFLFKLIFHDYD----DEV-CLKLLKNCREAVASSDGRE-KVII  292 (359)
Q Consensus       254 D~i~~~~vlh~~~----d~~-~~~iL~~~~~~L~p~~~gG-~lli  292 (359)
                      |+|++-..-. -+    |.. ...+|.-+.+.|+|   || .+++
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv  181 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI  181 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence            9999876542 22    222 22357778889999   78 6666

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.07  E-value=0.0018  Score=57.44  Aligned_cols=105  Identities=8%  Similarity=0.147  Sum_probs=68.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHH-Hh---cCCC--CCCceEEeC-CCCC-CCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV-IA---DLPE--TDNLKFIAG-DMNQ-SIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-i~---~a~~--~~rv~~~~~-d~~~-~~~~~  253 (359)
                      ..+.+.+.  +.+..+|||+||++|.++..++....-.+|.++|+-.. .+   ..+.  -.-|+++.+ |++. +...+
T Consensus        84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~  161 (321)
T 3lkz_A           84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC  161 (321)
T ss_dssp             HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence            45555544  67778999999999999998877665557999998211 11   0111  234888888 8766 32348


Q ss_pred             cEEEecchhccCChhH-----HHHHHHHHHHhcCCCCCC-ceEEE
Q 043623          254 DAFLFKLIFHDYDDEV-----CLKLLKNCREAVASSDGR-EKVII  292 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~-----~~~iL~~~~~~L~p~~~g-G~lli  292 (359)
                      |++++--. ---+.+.     ..++|.-+.+.|++   | |.++|
T Consensus       162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~  202 (321)
T 3lkz_A          162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV  202 (321)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred             CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence            98887654 2222222     23467777899988   5 56665

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=97.03  E-value=0.00025  Score=48.98  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=45.0

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      +..|++.|...+.|+|..+||+.+|+   +...+.+.|..|...|++..+.        .+.|+++
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence            44567777653468999999999999   5799999999999999998765        4788765

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=96.75  E-value=0.00065  Score=51.80  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=51.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhc--CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSAL--EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +..|+..|..+ ++.|+.+||+.+  ++   ++..+++-|+.|...|+|...+        .+.|++|+.+..+..
T Consensus        15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~--------rg~Y~LT~~G~~~l~   78 (111)
T 3b73_A           15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA--------NGVYVITEEGEAYLN   78 (111)
T ss_dssp             HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS--------TTCEEECHHHHHHHT
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC--------CceEEECchHHHHHH
Confidence            34567777653 799999999999  99   6899999999999999999876        469999999884443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.74  E-value=0.0044  Score=55.40  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhcCCC-----
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF-----PSIKCSVLEL----PH-----------------------VIADLPE-----  235 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~----~~-----------------------~i~~a~~-----  235 (359)
                      ..+.+|||+|+..|..+..++...     |+.+++++|.    |+                       ..+.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346899999999999998887654     5788999994    11                       0111111     


Q ss_pred             ---CCCceEEeCCCCC--C-CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          236 ---TDNLKFIAGDMNQ--S-IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       236 ---~~rv~~~~~d~~~--~-~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                         .++|+++.||+.+  + .+  .+|++++-.-.    -+.....|..+.+.|+|   || ++|+|-.
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~p---GG-iIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSV---GG-YVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEE---EE-EEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCC---CE-EEEEcCC
Confidence               3899999999976  2 32  38888877522    13346789999999999   55 5555543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.72  E-value=0.0023  Score=58.22  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-C-------
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-S-------  249 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~-------  249 (359)
                      .++++.+.  ..++..+||..||.|..+..++++. |+.+++++|. |++++.++.  .+|++++.+++.+ .       
T Consensus        47 ~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g  124 (347)
T 3tka_A           47 DEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERD  124 (347)
T ss_dssp             HHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence            77888776  6778999999999999999999985 8899999999 778776643  5789999998876 1       


Q ss_pred             CC-CccEEEecchh
Q 043623          250 IP-SADAFLFKLIF  262 (359)
Q Consensus       250 ~~-~~D~i~~~~vl  262 (359)
                      ++ .+|.|++.--+
T Consensus       125 ~~~~vDgILfDLGV  138 (347)
T 3tka_A          125 LIGKIDGILLDLGV  138 (347)
T ss_dssp             CTTCEEEEEEECSC
T ss_pred             CCCcccEEEECCcc
Confidence            22 37777776443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.72  E-value=0.0048  Score=55.59  Aligned_cols=129  Identities=18%  Similarity=0.229  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCchHHHHHH----HHHCCCCeE--EEeechHHHhcC------------------C--CCCCc--eEEeCC
Q 043623          194 GLSSLVEVGGGTGSFARII----SEAFPSIKC--SVLELPHVIADL------------------P--ETDNL--KFIAGD  245 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l----~~~~p~~~~--~~~D~~~~i~~a------------------~--~~~rv--~~~~~d  245 (359)
                      +.-+|+|+|-|+|......    .+..|+.++  +.++.. .++..                  .  ...+|  ++..+|
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~-pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKE-LLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESS-CCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHH-HHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            3468999999999865433    345677654  545421 11100                  0  03444  456788


Q ss_pred             CCC---CCC--CccEEEecch-hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623          246 MNQ---SIP--SADAFLFKLI-FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT  319 (359)
Q Consensus       246 ~~~---~~~--~~D~i~~~~v-lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
                      +.+   .++  .+|++++-.. -..-|+-....+++.+++.++|   ||.+.-..                         
T Consensus       175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt-------------------------  226 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS-------------------------  226 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC-------------------------
T ss_pred             HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe-------------------------
Confidence            765   233  3899887542 1222233345789999999999   77664210                         


Q ss_pred             hcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623          320 CVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY  358 (359)
Q Consensus       320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~  358 (359)
                             ....+++-|+++||++.++...++-.-++.|.
T Consensus       227 -------aag~VRR~L~~aGF~V~k~~G~g~KReml~A~  258 (308)
T 3vyw_A          227 -------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS  258 (308)
T ss_dssp             -------CCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred             -------CcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence                   23455788999999998887666655566554

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=96.57  E-value=0.0013  Score=48.65  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      ++..-.++.|+..| .  ++.|..+||+.+++   ++..+.+.|+.|...|++.+..         +.|++++.+.
T Consensus        27 ~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~---------g~y~l~~~g~   87 (96)
T 1y0u_A           27 AVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG---------ERWVVTDAGK   87 (96)
T ss_dssp             HHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECTTTC
T ss_pred             HhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC---------CEEEECCCch
Confidence            44445566778888 5  78999999999999   6799999999999999999874         5899988654

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.46  E-value=0.0014  Score=46.54  Aligned_cols=59  Identities=10%  Similarity=0.140  Sum_probs=47.0

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcc-hHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRN-CLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      -.|++.|... +|.|+.+||+.+|+   ... .+++.|..|...|+|...+.      +...|.+|+.+.
T Consensus        14 ~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~------gRP~w~LT~~g~   73 (79)
T 1xmk_A           14 EKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT------TPPIWHLTDKKR   73 (79)
T ss_dssp             HHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS------SSCEEEECHHHH
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC------CCCCeEeCHhHH
Confidence            3455566654 79999999999999   466 99999999999999986642      134899998765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.42  E-value=0.046  Score=55.32  Aligned_cols=148  Identities=12%  Similarity=0.149  Sum_probs=102.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFP--------SIKCSVLELPHVIADLPE------------------------------  235 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~i~~a~~------------------------------  235 (359)
                      +...||-+|||.=.....+...+|        +++++-+|+|++++.-++                              
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            457899999999999999988755        778888998888643210                              


Q ss_pred             CCCceEEeCCCCCC--C-----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC
Q 043623          236 TDNLKFIAGDMNQS--I-----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK  301 (359)
Q Consensus       236 ~~rv~~~~~d~~~~--~-----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~  301 (359)
                      +++.+++..|+.+.  +           ++ .=++++-.+|.+++.+++.++|+.+.+ + |   ++.+++.|...+...
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~  261 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP  261 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence            24889999999871  1           12 345677889999999999999999985 5 5   588899998876543


Q ss_pred             CCchHHHHHHHhhhhhhhh---cCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          302 DKPEITEAKLLYDALMMTC---VPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                      ..+ +... ....+.....   ......+.++..+.|.+.||+.+....+
T Consensus       262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence            332 2111 1111111100   0113347999999999999997766543

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.17  E-value=0.0021  Score=57.44  Aligned_cols=56  Identities=13%  Similarity=0.294  Sum_probs=46.3

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|..++++.|+.|||+++|++   ..-+.|+|+.|...|+|.+++        ++.|++++.
T Consensus        33 l~IL~~l~~~~~~ltl~eia~~lgl~---ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~   88 (275)
T 3mq0_A           33 VRILDLVAGSPRDLTAAELTRFLDLP---KSSAHGLLAVMTELDLLARSA--------DGTLRIGPH   88 (275)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHTCC-----CHHHHHHHHHHTTSEEECT--------TSEEEECTH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEECC--------CCcEEehHH
Confidence            44677776655689999999999994   688999999999999999986        478999985

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.14  E-value=0.0093  Score=55.23  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=72.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC------------CCCCCceEEeCCCCC--C-CC-Ccc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL------------PETDNLKFIAGDMNQ--S-IP-SAD  254 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a------------~~~~rv~~~~~d~~~--~-~~-~~D  254 (359)
                      ..++.+|||+.+|.|.=+.+++...++.++++.|+ +.-+..+            +...+|.+...|...  + .+ .||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            56778999999999999999999877778899998 3322221            124678888888776  2 23 499


Q ss_pred             EEEec----c----hh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          255 AFLFK----L----IF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       255 ~i~~~----~----vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      .|++-    .    ++       +.+..++.       .++|.++.+.|||   ||+|+-.-..+...
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~  290 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHL  290 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTT
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchh
Confidence            99852    1    11       12222221       3689999999999   88776555544433

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=95.88  E-value=0.017  Score=43.30  Aligned_cols=47  Identities=9%  Similarity=0.256  Sum_probs=39.2

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .++.|+..|..  ++.|+.+||+.+|+   ++..+.+.|+.|...|++....
T Consensus        27 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~   73 (106)
T 1r1u_A           27 NRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR   73 (106)
T ss_dssp             HHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence            34455555654  68999999999999   6899999999999999999775

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=95.87  E-value=0.0073  Score=45.01  Aligned_cols=60  Identities=22%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      -.++.|+..|..  ++.|+.+||+.+|+   ++..+.+.|+.|...|+|.....     +....|++++.
T Consensus        23 ~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-----g~~~~y~l~~~   82 (102)
T 3pqk_A           23 PVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN-----IKQIFYRLTEA   82 (102)
T ss_dssp             HHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS-----SSCCEEEECSS
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-----CCEEEEEECcH
Confidence            344455556654  78999999999999   57899999999999999987752     11346777764

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=95.84  E-value=0.0034  Score=55.55  Aligned_cols=57  Identities=18%  Similarity=0.308  Sum_probs=48.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|..++++.|..|||+++|+   +..-+.|+|+.|...|+|.+++.       .+.|++++.
T Consensus         9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-------~~~Y~lG~~   65 (260)
T 3r4k_A            9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-------ARSYRLGPQ   65 (260)
T ss_dssp             HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-------SSEEEECTT
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEEcCHH
Confidence            4567777654478999999999999   57899999999999999999862       379999975

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=95.83  E-value=0.0043  Score=45.94  Aligned_cols=64  Identities=22%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.--.++.|+..|.+  ++.|+.+||+.+|+   ++..+.+.|+.|...|++.....     +....|++++.
T Consensus        19 ~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-----g~~~~y~l~~~   82 (98)
T 3jth_A           19 AMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE-----AQTVYYTLKSE   82 (98)
T ss_dssp             HHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC-----TTCCEEEECCH
T ss_pred             HcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-----CCEEEEEECHH
Confidence            3444456667777775  79999999999999   68999999999999999988752     11235777764

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=95.74  E-value=0.0055  Score=43.36  Aligned_cols=58  Identities=16%  Similarity=0.244  Sum_probs=45.0

Q ss_pred             HcCcccccccCC--CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           37 ELGIPDIIHKRG--RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        37 ~lglf~~L~~~~--~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      +..|++.|...+  .+.|+.|||+++|+   +...+++.|..|...|++...+.      .++.|.+++
T Consensus        16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~------~~~~W~i~~   75 (77)
T 1qgp_A           16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS------SSCEEEECC
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCceEecC
Confidence            445666665531  37999999999999   57899999999999999988752      146787765

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.73  E-value=0.011  Score=54.68  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCceEEeCCCCC-C-C----CC------------
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP---ETDNLKFIAGDMNQ-S-I----PS------------  252 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~---~~~rv~~~~~d~~~-~-~----~~------------  252 (359)
                      ...|||||.|.|.++..|+++...-+++++++ +..+...+   ..++++++.+|+++ + +    ..            
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~  138 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSD  138 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTT
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhcccccccccccccc
Confidence            57899999999999999998743347888887 44443322   35799999999976 3 2    11            


Q ss_pred             ---ccEEEecchhccCChhHHHHHHHH
Q 043623          253 ---ADAFLFKLIFHDYDDEVCLKLLKN  276 (359)
Q Consensus       253 ---~D~i~~~~vlh~~~d~~~~~iL~~  276 (359)
                         -.+.+..|.-++.+-+-..++|..
T Consensus       139 ~~~~~~~vvaNLPYnIstpil~~ll~~  165 (353)
T 1i4w_A          139 HINDKFLTVANVTGEGSEGLIMQWLSC  165 (353)
T ss_dssp             SEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred             cCCCceEEEEECCCchHHHHHHHHHHh
Confidence               024566776666655544455554

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.72  E-value=0.0063  Score=43.34  Aligned_cols=59  Identities=12%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      ....|++.|..  .+.|+.|||+++|+   +...+++.|..|...|++.....+      +-.|+++...
T Consensus        18 ~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~~------PP~W~~~~~~   76 (82)
T 1oyi_A           18 IVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDDI------PPRWFMTTEA   76 (82)
T ss_dssp             HHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSSS------SCEEESCC--
T ss_pred             HHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCCC------CCcceeccCc
Confidence            44556677775  34999999999999   579999999999999999988632      5688887653

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=95.68  E-value=0.0051  Score=53.77  Aligned_cols=62  Identities=15%  Similarity=0.229  Sum_probs=49.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.|++.|..++++.|..|||+++|+   +...+.|+|+.|...|+|.+++.       .+.|++++....|.
T Consensus         9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-------~~~Y~lg~~~~~lg   70 (241)
T 2xrn_A            9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-------AGGFRLGPALGQLI   70 (241)
T ss_dssp             HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-------GCEEEECSHHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------CCeEEECHHHHHHH
Confidence            3456666554458999999999999   57899999999999999999852       37899998544333

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=95.66  E-value=0.0099  Score=42.41  Aligned_cols=62  Identities=15%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             HcCcccccccC--CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchh
Q 043623           37 ELGIPDIIHKR--GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKL  107 (359)
Q Consensus        37 ~lglf~~L~~~--~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~  107 (359)
                      +..|++.|.+.  |.+.|+.+||+++|+   +...+++.|..|...|++...+.      .++.|.+.+....
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~------~~~~W~i~~~~~~   75 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAVSTQA   75 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS------SSCEEEEC-----
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCeeEEeCcHHh
Confidence            34455566542  137999999999999   57899999999999999987642      1478888876543

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=95.66  E-value=0.0044  Score=47.12  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=46.8

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      .++.|+..|..  ++.|..+||+.+|+   ++..+.+.|+.|...|++.....     +....|.+++.+.
T Consensus        22 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~-----gr~~~y~l~~~~~   82 (114)
T 2oqg_A           22 TRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV-----GREIRYRALGAEL   82 (114)
T ss_dssp             HHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECSHHH
T ss_pred             HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec-----CCEEEEEechHHH
Confidence            44556666643  78999999999999   68999999999999999987641     0023488887654

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=95.60  E-value=0.0062  Score=46.37  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCC--HHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623           16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVT--LPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR   92 (359)
Q Consensus        16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t--~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~   92 (359)
                      ...+++.+.+.|...+|..         |..  ++.+  +.||++.+ |+   ++..+.+.|+.|...|+|++...    
T Consensus        17 ~~~~l~~l~~~wrl~IL~~---------L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~----   78 (111)
T 3df8_A           17 SESVLHLLGKKYTMLIISV---------LGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG----   78 (111)
T ss_dssp             TSSTHHHHHSTTHHHHHHH---------HTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES----
T ss_pred             HHHHHHHHcCccHHHHHHH---------Hhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec----
Confidence            3445666667776666553         332  6777  99999999 99   68999999999999999998741    


Q ss_pred             CCCCceEecCccchhhh
Q 043623           93 EEENEAYALTSASKLLL  109 (359)
Q Consensus        93 ~~~~~~~~~t~~~~~l~  109 (359)
                        -...|++|+.|+.+.
T Consensus        79 --r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           79 --QITTYALTEKGMNVR   93 (111)
T ss_dssp             --SSEEEEECHHHHHHH
T ss_pred             --CcEEEEECccHHHHH
Confidence              025799999887555

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=95.58  E-value=0.007  Score=46.88  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=50.3

Q ss_pred             HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.+|.--.++.|+..|... ++.|+.+||+.+|+   ++..+.+.|+.|...|++.....     +....|++++.
T Consensus        36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~-----gr~~~y~l~~~  102 (122)
T 1u2w_A           36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-----GKLALYSLGDE  102 (122)
T ss_dssp             HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CCEEEESCH
T ss_pred             HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE-----CCEEEEEECHH
Confidence            3444455567788888743 78999999999999   68999999999999999987752     11235777764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.55  E-value=0.036  Score=49.21  Aligned_cols=92  Identities=12%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             cCCCCeEEEEcC------CchHHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCceEEeCCCCC-CC-CCccEEEecchh
Q 043623          192 FDGLSSLVEVGG------GTGSFARIISEAFPS-IKCSVLELPHVIADLPETDNLKFIAGDMNQ-SI-PSADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~-~~~D~i~~~~vl  262 (359)
                      .+.+.+|||+|+      -.|..  .+.+..|. ..++.+|+.++...+   +  .++.+|..+ .. ..||+|++-..-
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda---~--~~IqGD~~~~~~~~k~DLVISDMAP  179 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA---D--STLIGDCATVHTANKWDLIISDMYD  179 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS---S--EEEESCGGGEEESSCEEEEEECCCC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC---C--eEEEccccccccCCCCCEEEecCCC
Confidence            467899999996      66773  33445786 699999986555322   1  458899766 22 349999875432


Q ss_pred             c---cC------ChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          263 H---DY------DDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       263 h---~~------~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      -   +.      ...-+..++.-+.+.|+|   ||.+++-
T Consensus       180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK  216 (344)
T 3r24_A          180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK  216 (344)
T ss_dssp             TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence            1   11      222466778888999999   8888774

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=95.53  E-value=0.0066  Score=44.74  Aligned_cols=63  Identities=10%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      .-.++.|+..|.. +++.|..+||+.+|+   ++..+.+.|+.|...|++.....     +....|++++.+
T Consensus        23 ~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~-----~r~~~y~l~~~~   85 (99)
T 3cuo_A           23 HPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD-----AQRILYSIKNEA   85 (99)
T ss_dssp             SHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-----SSCEEEEECCHH
T ss_pred             ChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-----CCEEEEEEChHH
Confidence            3445666777765 368999999999999   68999999999999999998752     112357777653

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=95.49  E-value=0.0077  Score=52.87  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=46.8

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|..++++.|..|||+++|+   +...+.|+|+.|...|++.++.        .+.|++++.
T Consensus        11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~--------~~~Y~lg~~   66 (249)
T 1mkm_A           11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYK   66 (249)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC--------CCcEEECHH
Confidence            4456666654458999999999999   5789999999999999999884        478999975

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=95.46  E-value=0.0057  Score=43.20  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |+|.|+.|||+.+|+   ++..+++-|..|...|++.+..
T Consensus        22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~   58 (77)
T 2jt1_A           22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN   58 (77)
T ss_dssp             TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred             CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence            589999999999999   5788999999999999999985

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=95.46  E-value=0.023  Score=42.80  Aligned_cols=57  Identities=12%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|+..|..  ++.|+.|||+.+|+   ++..+.+.|+.|...|+|.....     +....|++++.
T Consensus        28 ~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-----gr~~~y~l~~~   84 (108)
T 2kko_A           28 LQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE-----GTRQYYRIAGE   84 (108)
T ss_dssp             HHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEESCH
T ss_pred             HHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-----CCEEEEEEChH
Confidence            344445554  68999999999999   68999999999999999987752     01125777754

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.45  E-value=0.0082  Score=42.50  Aligned_cols=43  Identities=12%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      |.+.|.++ +.++++|||+.+++   ++.-++|-|+.|...|++.+.
T Consensus         7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence            45667664 79999999999999   689999999999999999998

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=95.44  E-value=0.0086  Score=52.94  Aligned_cols=56  Identities=13%  Similarity=0.304  Sum_probs=46.2

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.|...+++.|+.|||+++|+   +..-+.|+|+.|...|++.++.        .+.|++++.
T Consensus        26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~   81 (260)
T 2o0y_A           26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPE   81 (260)
T ss_dssp             HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHH
T ss_pred             HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHH
Confidence            3456666533378999999999999   5789999999999999999986        348999875

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=95.39  E-value=0.012  Score=46.11  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           15 AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        15 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      +....++++.+-|...+|...         ..  ++.+..||++.+ |+   ++..|.+.|+.|...|+|++.....  +
T Consensus        15 pi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~--d   78 (131)
T 4a5n_A           15 PVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQ--V   78 (131)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS--S
T ss_pred             cHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCC--C
Confidence            567778888888887777643         22  789999999999 99   6899999999999999999885210  0


Q ss_pred             CCCceEecCccchhhhc
Q 043623           94 EENEAYALTSASKLLLK  110 (359)
Q Consensus        94 ~~~~~~~~t~~~~~l~~  110 (359)
                      .-.-.|++|+.|+.|..
T Consensus        79 ~r~v~y~LT~~G~~l~~   95 (131)
T 4a5n_A           79 PPKVEYSLTEFGRTLEP   95 (131)
T ss_dssp             SCEEEEEECTTGGGGHH
T ss_pred             CCeEEEEECHhHHHHHH
Confidence            00136999999886653

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=95.30  E-value=0.015  Score=43.85  Aligned_cols=77  Identities=13%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623           17 AHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE   95 (359)
Q Consensus        17 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~   95 (359)
                      ..+++.+.+-|...+|..         |..  ++.+..+||+.+ ++   ++..+.+.|+.|...|+|.+....  .|.-
T Consensus         5 ~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~--~d~r   68 (107)
T 2hzt_A            5 EATLEVIGGKWKXVILXH---------LTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYN--QVPP   68 (107)
T ss_dssp             HHHHHHHCSTTHHHHHHH---------HTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEEC--SSSC
T ss_pred             HHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecC--CCCC
Confidence            345555556666555543         332  689999999999 99   689999999999999999987521  0011


Q ss_pred             CceEecCccchhhh
Q 043623           96 NEAYALTSASKLLL  109 (359)
Q Consensus        96 ~~~~~~t~~~~~l~  109 (359)
                      .-.|.+|+.|+.+.
T Consensus        69 ~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           69 KVEYELSEYGRSLE   82 (107)
T ss_dssp             EEEEEECTTGGGGH
T ss_pred             eEEEEECccHHHHH
Confidence            13699998876444

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=95.30  E-value=0.012  Score=51.96  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +.|++.|..++++.|..|||+++|+   +...+.|+|+.|...|++.+++         +.|++++....|..
T Consensus        17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~~---------~~Y~Lg~~~~~l~~   77 (257)
T 2g7u_A           17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGSG---------GRWSLTPRVLSIGQ   77 (257)
T ss_dssp             HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECGGGHHHHT
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC---------CEEEEcHHHHHHHH
Confidence            4466777644478999999999999   5789999999999999999873         78999987554543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.27  E-value=0.058  Score=52.69  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF-------------PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP  251 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~  251 (359)
                      ..+.+|+|-.||+|.++....+..             ...++.|+|+ +.+...++.      .+.-.+..+|.+. +..
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR  295 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence            445699999999999998776532             1346899998 555554442      2334567788775 321


Q ss_pred             ------CccEEEecchhcc-CC-------------hhHHHHHHHHHHHhcC-------CCCCCceEEEEee
Q 043623          252 ------SADAFLFKLIFHD-YD-------------DEVCLKLLKNCREAVA-------SSDGREKVIIVDI  295 (359)
Q Consensus       252 ------~~D~i~~~~vlh~-~~-------------d~~~~~iL~~~~~~L~-------p~~~gG~lli~e~  295 (359)
                            .||+|+.+=-+-. +.             .+.-..++..+.+.|+       |   ||++.++-+
T Consensus       296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP  363 (530)
T 3ufb_A          296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP  363 (530)
T ss_dssp             GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred             hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence                  3999998754421 11             1112346778888886       6   899877644

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.25  E-value=0.0082  Score=43.38  Aligned_cols=44  Identities=9%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |.+.|.+. +.++++|||+.+++   ++.-++|.|+.|...|++.+..
T Consensus         7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~   50 (87)
T 2k02_A            7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS   50 (87)
T ss_dssp             HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            45667664 79999999999999   6899999999999999999984

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=95.25  E-value=0.0076  Score=46.35  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=50.9

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      .+|.--.++.|+..|..  +|.++.+||+.+|+   ++..+.+.|+.|...|+|.....     +-.-.|++++.+.
T Consensus        13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~-----gr~~~y~l~~~~~   79 (118)
T 3f6o_A           13 QALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ-----GRVRTCAIEKEPF   79 (118)
T ss_dssp             HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECSHHH
T ss_pred             HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec-----CCEEEEEECHHHH
Confidence            34444556667777764  79999999999999   68999999999999999987752     1124688887543

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=95.20  E-value=0.035  Score=43.71  Aligned_cols=93  Identities=15%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             HhHHHHHHHHHHHHhHHHHHHHH-----HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623           11 ELFQAQAHLYKHVLSYMSSIFLK-----CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST   85 (359)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~~~l~-----~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~   85 (359)
                      +......++...+...+...+-.     ...++.++..|..+ ++.|..+||+.+++   ++..+.+.++.|...|+|.+
T Consensus         8 ~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r   83 (142)
T 3ech_A            8 DLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRR   83 (142)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEee
Confidence            34444444555444443333332     35566778888765 68999999999999   67999999999999999998


Q ss_pred             ccccCCCCCCCceEecCccchhhh
Q 043623           86 TKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        86 ~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .....  |.-.-.+.+|+.|+.+.
T Consensus        84 ~~~~~--DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           84 ERNPS--DQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             ------------CCEECHHHHHHH
T ss_pred             ccCCC--CCCeeeeEECHHHHHHH
Confidence            74200  00012367888777444

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=95.18  E-value=0.015  Score=42.90  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=46.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      |+..+..  + .+..+||..+++   +++.++..++.|...|++....         +.|.+|+.|..+.
T Consensus        13 IL~~i~~--~-~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~---------~~~~LT~kG~~~l   67 (95)
T 1r7j_A           13 ILEACKS--G-SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG---------KQYMLTKKGEELL   67 (95)
T ss_dssp             HHHHHTT--C-BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred             HHHHHHc--C-CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC---------CeeEEChhHHHHH
Confidence            4455543  4 899999999999   6899999999999999999985         6799999998544

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=95.14  E-value=0.0086  Score=48.30  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      .+.+|.--.++.|+..|..  ++.|+.+||+.+|+   ++..+.+.|+.|...|+|.....     +-.-.|++++.+.
T Consensus        51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~-----Gr~~~y~lt~~~~  119 (151)
T 3f6v_A           51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD-----GRFRYYRLDPQGL  119 (151)
T ss_dssp             HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-----CCEEEEEEChHHH
Confidence            4566777778889999975  79999999999999   68999999999999999998752     1123688887643

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=94.96  E-value=0.013  Score=52.00  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=46.8

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS  105 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~  105 (359)
                      +.|++.|..++++.|+.|||+++|+   +...+.|+|+.|...|++.+++         +.|++++..
T Consensus        24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~~---------~~Y~Lg~~~   79 (265)
T 2ia2_A           24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATDG---------SAFWLTPRV   79 (265)
T ss_dssp             HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEESS---------SEEEECGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecC---------CEEEEcHHH
Confidence            4466777543478999999999999   5789999999999999999873         789998853

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=94.89  E-value=0.014  Score=46.11  Aligned_cols=50  Identities=18%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   ++..+.+.|+.|...|+|.+..        ...|.+|+.|..+.
T Consensus        21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~   70 (142)
T 1on2_A           21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG   70 (142)
T ss_dssp             SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence            68999999999999   6899999999999999999886        46899999887554

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=94.85  E-value=0.028  Score=43.77  Aligned_cols=47  Identities=17%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ++.|.++||+++++   ++..++++|+.|...|++.....      .++.|+++..
T Consensus        25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g------~~ggy~L~~~   71 (129)
T 2y75_A           25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG------AYGGYVLGSE   71 (129)
T ss_dssp             CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred             CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC------CCCceEeCCC
Confidence            78999999999999   57999999999999999987741      1367887653

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=94.81  E-value=0.035  Score=44.10  Aligned_cols=69  Identities=12%  Similarity=0.154  Sum_probs=47.6

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|...+++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~  108 (150)
T 3fm5_A           40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPS--DRRNKLIAATEEGRRLR  108 (150)
T ss_dssp             HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-------------CEECHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCcc--ccchheeeECHHHHHHH
Confidence            345566677544467899999999999   6899999999999999999874200  00011377888877554

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=94.78  E-value=0.026  Score=40.10  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      .|++.|... ++.|..|||+.+|+   ++..+++.|+.|...|++...
T Consensus         4 ~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~   47 (81)
T 2htj_A            4 EILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS   47 (81)
T ss_dssp             HHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence            355666553 68999999999999   689999999999999999854

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=94.65  E-value=0.017  Score=41.23  Aligned_cols=48  Identities=19%  Similarity=0.380  Sum_probs=40.8

Q ss_pred             HcCcccccccCC-CCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRG-RPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~-~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +..|++.|..++ ++.|++||++.+     ++   +..-+.|.|+.|...|+|.+..
T Consensus        19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~   72 (83)
T 2fu4_A           19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN   72 (83)
T ss_dssp             HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence            455777776544 689999999999     88   6899999999999999999874

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=94.60  E-value=0.039  Score=44.81  Aligned_cols=46  Identities=15%  Similarity=0.400  Sum_probs=39.5

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      ++.|.++||+.+++   ++..++++|..|...|+|.....      .+|.|+++.
T Consensus        43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG------~~GGy~Lar   88 (159)
T 3lwf_A           43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG------AHGGYVLNG   88 (159)
T ss_dssp             CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS------TTCEEEECS
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC------CCCceEecC
Confidence            68999999999999   58999999999999999997752      246788764

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=94.58  E-value=0.021  Score=44.17  Aligned_cols=49  Identities=14%  Similarity=0.232  Sum_probs=41.9

Q ss_pred             HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      --.++.|+..|..  ++.++.+||+.+|+   ++..+.+.|+.|...|++....
T Consensus        45 ~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~   93 (122)
T 1r1t_A           45 DPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK   93 (122)
T ss_dssp             CHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence            3346677777864  68999999999999   6899999999999999998765

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=94.57  E-value=0.081  Score=41.29  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.|.+|+.|..+.
T Consensus        32 ~~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~--~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           32 TRYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNP--DNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS--SSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC--CCCCeeEEEECHHHHHHH
Confidence            345567777654 68999999999999   689999999999999999987521  011123588899888555

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=94.53  E-value=0.015  Score=50.76  Aligned_cols=62  Identities=13%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|+..|... ++.|..+||+.+++   +...+.|.|+.|...|++.+.+.       ...|.+|+.+..+.
T Consensus       154 ~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-------~~~~~LT~~G~~l~  215 (244)
T 2wte_A          154 EMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-------DRKVELNELGLNVI  215 (244)
T ss_dssp             HHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-------TTEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------ccEEEECHHHHHHH
Confidence            34455565443 68999999999999   68999999999999999998742       46899999887554

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=94.52  E-value=0.045  Score=41.06  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623           14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR   92 (359)
Q Consensus        14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~   92 (359)
                      -+...+++.+.+.|...+|..         |..  ++.+..+|++.+ |+   ++..+.+.|+.|...|+|.+.....  
T Consensus        13 c~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~--   76 (107)
T 2fsw_A           13 CPVRKSMQIFAGKWTLLIIFQ---------INR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPE--   76 (107)
T ss_dssp             CHHHHHHHHHTSSSHHHHHHH---------HTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECS--
T ss_pred             CCHHHHHHHHcCccHHHHHHH---------HHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCC--
Confidence            345666777777777665543         332  689999999999 49   6899999999999999999875210  


Q ss_pred             CCCCceEecCccchhhh
Q 043623           93 EEENEAYALTSASKLLL  109 (359)
Q Consensus        93 ~~~~~~~~~t~~~~~l~  109 (359)
                      +.-.-.|.+|+.|+.+.
T Consensus        77 d~r~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           77 VPPRVEYSLTPLGEKVL   93 (107)
T ss_dssp             SSCEEEEEECHHHHTTH
T ss_pred             CCCeeEEEECccHHHHH
Confidence            00113699999876444

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=94.43  E-value=0.022  Score=44.66  Aligned_cols=80  Identities=16%  Similarity=0.261  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623           14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR   92 (359)
Q Consensus        14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~   92 (359)
                      -+...+++++.+.|...+|..         |..  ++.+..+|++.+ |+   ++..+.+.|+.|...|+|.+....+  
T Consensus        23 c~~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~--   86 (131)
T 1yyv_A           23 CPSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPV--   86 (131)
T ss_dssp             CTHHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECS--
T ss_pred             CCHHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCC--
Confidence            356667777777777665544         333  689999999999 79   6899999999999999999875210  


Q ss_pred             CCCCceEecCccchhhh
Q 043623           93 EEENEAYALTSASKLLL  109 (359)
Q Consensus        93 ~~~~~~~~~t~~~~~l~  109 (359)
                      +.-.-.|.+|+.|+.+.
T Consensus        87 d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           87 VPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             SSCEEEEEECHHHHHHH
T ss_pred             CCCeEEEEECccHHHHH
Confidence            00013699999887554

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=94.39  E-value=0.017  Score=43.88  Aligned_cols=79  Identities=14%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           15 AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        15 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      +...+++++.+.|...+|..         |..  ++.+..+||+.+ ++   ++..+.+.|+.|...|+|.+....  .|
T Consensus        11 ~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~--~d   74 (112)
T 1z7u_A           11 SINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFN--EL   74 (112)
T ss_dssp             HHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEEC--CS
T ss_pred             CHHHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecC--CC
Confidence            45556666666666555543         333  689999999999 99   689999999999999999987521  00


Q ss_pred             CCCceEecCccchhhh
Q 043623           94 EENEAYALTSASKLLL  109 (359)
Q Consensus        94 ~~~~~~~~t~~~~~l~  109 (359)
                      .-.-.|.+|+.|..+.
T Consensus        75 ~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           75 PPRVEYTLTPEGYALY   90 (112)
T ss_dssp             SCEEEEEECHHHHHHH
T ss_pred             CCeEEEEECHhHHHHH
Confidence            0113599999887544

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=94.24  E-value=0.025  Score=45.18  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623           16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE   95 (359)
Q Consensus        16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~   95 (359)
                      ..+.++.+.+.|...+|...         ..  ++.+..||++.+++   ++..+.+.|+.|...|++++....  .+. 
T Consensus        14 ~~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~--~d~-   76 (146)
T 2f2e_A           14 VARPLDVIGDGWSMLIVRDA---------FE--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE--SGS-   76 (146)
T ss_dssp             TTTTHHHHCSSSHHHHHHHH---------HT--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS--SSS-
T ss_pred             HHHHHHHhCCchHHHHHHHH---------Hh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecC--CCC-
Confidence            34456666666666655443         22  68999999999999   689999999999999999987521  111 


Q ss_pred             CceEecCccchhhh
Q 043623           96 NEAYALTSASKLLL  109 (359)
Q Consensus        96 ~~~~~~t~~~~~l~  109 (359)
                      .-.|++|+.|+.+.
T Consensus        77 ~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           77 HQEYRLTDKGRALF   90 (146)
T ss_dssp             CEEEEECHHHHTTH
T ss_pred             eEEEEECchHHHHH
Confidence            24799999876544

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=94.14  E-value=0.046  Score=43.50  Aligned_cols=46  Identities=13%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      ++.|.++||+.+++   ++..++++|..|...|+|....      |.+|.|+++.
T Consensus        27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~r------G~~GGy~Lar   72 (143)
T 3t8r_A           27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVR------GAKGGYQLRV   72 (143)
T ss_dssp             CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECS------SSSSEEEESS
T ss_pred             CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecC------CCCCCeeecC
Confidence            58999999999999   5899999999999999998764      1246788865

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=94.11  E-value=0.014  Score=43.03  Aligned_cols=71  Identities=23%  Similarity=0.334  Sum_probs=51.4

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK  106 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~  106 (359)
                      .++..-.++.|+..|... ++.|..+||+.+++   ++..+.+.|+.|...|++......  .++....|++|+.+.
T Consensus        11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~--~~~r~~~~~lt~~g~   81 (100)
T 1ub9_A           11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI--ADRPRTVVEITDFGM   81 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC--SSSCEEEEEECHHHH
T ss_pred             cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC--CCcceEEEEECHHHH
Confidence            344455566677777532 68999999999999   689999999999999999965310  011124688888765

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=94.09  E-value=0.1  Score=41.45  Aligned_cols=66  Identities=14%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.|+..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+.....  |.-.-.+.+|+.|..+.
T Consensus        40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~--d~R~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTK--DRRVIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCC--CCceEEEEECHHHHHHH
Confidence            4466677653 68999999999999   6899999999999999999875200  00112477888776544

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=94.06  E-value=0.03  Score=43.99  Aligned_cols=50  Identities=10%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +++.|..+||+.+++   ++..+.+.++.|...|+|.+..         ..|.+|+.+..+.
T Consensus        29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~---------~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE---------DGVWITNNGTRSI   78 (139)
T ss_dssp             TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC---------CeEEEChhHHHHH
Confidence            378999999999999   6899999999999999999874         5799998876443

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=93.97  E-value=0.1  Score=41.78  Aligned_cols=68  Identities=12%  Similarity=0.150  Sum_probs=48.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|...+++.|..+||+.+++   ++..+.++++.|...|+|.+....  .|.-.-.+.+|+.|..+.
T Consensus        49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~--~d~R~~~~~lT~~G~~~~  116 (160)
T 3boq_A           49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSA--DDRRSFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC--CCCCeEEEEEChhHHHHH
Confidence            45677788322478999999999999   578999999999999999987410  000012377888877544

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=93.96  E-value=0.038  Score=44.31  Aligned_cols=60  Identities=17%  Similarity=0.182  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      .+|++.+.+...   .  +++.|.++||+.+++   ++..++++|..|...|+|....      | .|.|+++..
T Consensus        15 yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r------G-~GGy~L~~~   74 (149)
T 1ylf_A           15 IAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR------G-PGGAGLLKD   74 (149)
T ss_dssp             HHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred             HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc------C-CCceEeCCC
Confidence            455555555432   2  268999999999999   5799999999999999998775      2 567888754

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=93.95  E-value=0.06  Score=43.81  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      .+|++.+.|..-   .  ++++|.++||+.+++   ++..+++++..|...|+|....      |-+|.|++...
T Consensus        13 yAlr~l~~La~~---~--~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~r------G~~GGy~Lar~   73 (162)
T 3k69_A           13 VAVHSILYLDAH---R--DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTV------GKNGGYQLDLA   73 (162)
T ss_dssp             HHHHHHHHHHTT---T--TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEEC------STTCEEECCSC
T ss_pred             HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec------CCCCCeEecCC
Confidence            455555544432   2  368999999999999   5799999999999999998764      22467988753

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=93.94  E-value=0.036  Score=44.05  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|..+ ++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           42 SQYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQS--DKRQLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCC--CcceeeeeECHHHHHHH
Confidence            345667777654 78999999999999   6899999999999999999874210  00113588888877554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.92  E-value=0.033  Score=50.09  Aligned_cols=40  Identities=15%  Similarity=0.005  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP  234 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~  234 (359)
                      .++..|||++||+|..+..+++.  +.+++++|+ +.+++.++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~  274 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK  274 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            46789999999999999998886  468999999 77776655

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=93.90  E-value=0.028  Score=41.40  Aligned_cols=63  Identities=13%  Similarity=0.173  Sum_probs=47.9

Q ss_pred             cCcccccccCCCCCCHHHH----HhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPEL----VSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~L----A~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|... ++.|..+|    |+.+++   ++..+.+.++.|...|++.+....     ....|.+|+.|+.+.
T Consensus        11 ~~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-----r~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           11 AIVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-----GEKRLYLTEKGKLFA   77 (99)
T ss_dssp             HHHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-----CceEEEECHHHHHHH
Confidence            3445555543 68999999    999999   689999999999999999986410     124688888887554

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=93.89  E-value=0.16  Score=40.14  Aligned_cols=67  Identities=9%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..| . +++.|..+||+.+++   ++..+.+.++.|...|++.+....+..|.-.-.+.+|+.|..+.
T Consensus        41 ~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~  107 (151)
T 3kp7_A           41 SHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI  107 (151)
T ss_dssp             HHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence            4477777 4 379999999999999   67999999999999999997310000000112467787777544

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=93.84  E-value=0.15  Score=40.38  Aligned_cols=67  Identities=21%  Similarity=0.349  Sum_probs=49.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+....  .|.-.-.+.+|+.|+.+.
T Consensus        42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~--~d~R~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNP--EHARSHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCS--SSTTSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc--ccccceeeEEChhhHHHH
Confidence            44567777654 68999999999999   689999999999999999987420  001112578888777444

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=93.83  E-value=0.04  Score=44.51  Aligned_cols=67  Identities=10%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+ ++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPT--HGRRILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCS--SSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCC--cCCeeEeEECHhHHHHH
Confidence            34567777664 68999999999999   6799999999999999999875210  00012588898887555

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=93.81  E-value=0.033  Score=38.58  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=46.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      +-.|++.|.++|.|++..+||+.+|+   +...+.+.|..|-..|.+....        .-.|.++
T Consensus        21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk--------RCyw~~~   75 (80)
T 2lnb_A           21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS--------PATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEES
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC--------CceeeCC
Confidence            34566777766799999999999999   6899999999999999999886        3567765

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=93.78  E-value=0.084  Score=41.49  Aligned_cols=67  Identities=9%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++ |..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|+.+.
T Consensus        38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~  104 (144)
T 3f3x_A           38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSK--DRRIVIVEITPKGRQVL  104 (144)
T ss_dssp             HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCC--CCceEEEEECHHHHHHH
Confidence            456677778764 45 99999999999   6899999999999999999875200  00001488898887554

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=93.67  E-value=0.089  Score=42.32  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=49.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+ ++.|..+||+.+++   ++..+.++++.|...|+|.+....  .|.-.-.+.+|+.|+.+.
T Consensus        55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~--~DrR~~~~~LT~~G~~~~  121 (161)
T 3e6m_A           55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISD--ADQRKRTVVLTRKGKKKL  121 (161)
T ss_dssp             HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC-----CCCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCc--ccCCeeEeeECHHHHHHH
Confidence            34467777654 68999999999999   689999999999999999987521  001113578888877554

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=93.53  E-value=0.15  Score=41.37  Aligned_cols=68  Identities=15%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        46 ~~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~~~LT~~G~~~~  113 (168)
T 2nyx_A           46 PQFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPT--SRRELLAALTKRGRDVV  113 (168)
T ss_dssp             HHHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCC--CCCeeEEEECHHHHHHH
Confidence            345667777654 68999999999999   6899999999999999999864210  00112478888877544

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=93.40  E-value=0.088  Score=38.68  Aligned_cols=55  Identities=20%  Similarity=0.351  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +++.+..+||+.+++   +...+.|.|..|...|+|.....   . .+-+...+|+.|+.+.
T Consensus        34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~---~-D~R~~v~LT~~G~~~l   88 (96)
T 2obp_A           34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE---A-DGRGHASLTQEGAALA   88 (96)
T ss_dssp             CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---T-TSCEEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC---C-CCceeEEECHHHHHHH
Confidence            378999999999999   68999999999999999998641   1 2234578888877444

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=93.39  E-value=0.085  Score=41.69  Aligned_cols=67  Identities=7%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|..+.
T Consensus        44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~d~R~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDE--HDRRVVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC--C---CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC--CCcceeEeEECHhHHHHH
Confidence            34566677654 68999999999999   689999999999999999986410  000112478888877544

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=93.36  E-value=0.08  Score=45.16  Aligned_cols=52  Identities=17%  Similarity=0.248  Sum_probs=46.1

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +++.+..+||+.+++   ++..+.+.++.|...|++.+..        ...+.+|+.|+.+..
T Consensus        18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~~   69 (214)
T 3hrs_A           18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLVS   69 (214)
T ss_dssp             CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHHH
T ss_pred             CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHHH
Confidence            378999999999999   6899999999999999999986        478999998875553

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=93.31  E-value=0.034  Score=45.27  Aligned_cols=68  Identities=18%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|...+++.|..+||+.+++   +...+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~  122 (166)
T 3deu_A           55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCAS--DRRAKRIKLTEKAEPLI  122 (166)
T ss_dssp             HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCC--CCCeeEEEECHHHHHHH
Confidence            45566667653468999999999999   6899999999999999999874200  00013578888887555

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=93.29  E-value=0.074  Score=42.36  Aligned_cols=59  Identities=8%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ..+|++.+.+..-    .  ++ |.++||++.++   ++..++++|..|...|||....      | .|.|+++..
T Consensus         9 ~yAl~~L~~La~~----~--~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r------G-~GGy~Lar~   67 (145)
T 1xd7_A            9 AVAIHILSLISMD----E--KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA------G-VPGASLKKD   67 (145)
T ss_dssp             HHHHHHHHHHHTC----S--CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS------S-SSSCEESSC
T ss_pred             HHHHHHHHHHHhC----C--CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec------C-CCCceecCC
Confidence            3455555554321    1  35 99999999999   5799999999999999998775      2 567888653

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=93.22  E-value=0.032  Score=43.62  Aligned_cols=68  Identities=12%  Similarity=0.130  Sum_probs=49.6

Q ss_pred             HcCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..++ ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|+.+.
T Consensus        33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~--~D~R~~~~~LT~~G~~~~  101 (139)
T 3eco_A           33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDA--QDTRRKNIGLTTSGIKLV  101 (139)
T ss_dssp             HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC--C--CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCC--CCCCeeeeEECHHHHHHH
Confidence            445566665543 48999999999999   689999999999999999987420  000113577888887555

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=93.15  E-value=0.052  Score=43.55  Aligned_cols=50  Identities=12%  Similarity=0.189  Sum_probs=43.6

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   ++..+++.|+.|...|+|.+..        +..+.+|+.|..+.
T Consensus        53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~~  102 (155)
T 2h09_A           53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKLA  102 (155)
T ss_dssp             SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHHH
Confidence            67999999999999   6899999999999999999875        46788998877544

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=93.12  E-value=0.034  Score=40.68  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=44.6

Q ss_pred             ccccccCCCCCCHHHHHhhcCCCCCCcch-HHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           41 PDIIHKRGRPVTLPELVSALEFQPNKRNC-LRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +..|...+.+.|..+||+.+++   ++.. +.+.++.|...|++..+..    |.-.-.+.+|+.|+.+.
T Consensus        21 L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~----drR~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           21 LLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETL----SYRVKTLKLTEKGRRLA   83 (95)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEE----ETTEEEEEECHHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCC----CCCeEEEEECHhHHHHH
Confidence            3344443237999999999999   6788 9999999999999994421    00013578888877554

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=93.12  E-value=0.041  Score=43.55  Aligned_cols=68  Identities=13%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+....  .|.-.-.+.+|+.|+.+.
T Consensus        41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCC--CCcceeEeEECHhHHHHH
Confidence            445566777664 68999999999999   689999999999999999987410  000113577888776544

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=93.11  E-value=0.033  Score=43.05  Aligned_cols=48  Identities=10%  Similarity=0.237  Sum_probs=39.6

Q ss_pred             HcCcccccccCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRP-VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~-~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +..|+..|..+++| .|+.+||+.+++   +...+.|.|+.|...|+|.+..
T Consensus        28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~   76 (123)
T 3r0a_A           28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ   76 (123)
T ss_dssp             HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence            44456666554456 999999999999   6899999999999999999863

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=93.06  E-value=0.044  Score=42.71  Aligned_cols=67  Identities=13%  Similarity=0.295  Sum_probs=49.3

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|+.+.
T Consensus        35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~--~d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNP--NDQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECS--SCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCC--CCCceeEEEECHHHHHHH
Confidence            45566677654 68999999999999   578999999999999999986410  001112477888877544

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=93.05  E-value=0.041  Score=43.05  Aligned_cols=68  Identities=13%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             HcCcccccccCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGR-PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~-~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|...++ +.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|..+.
T Consensus        36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~--~d~R~~~i~lT~~G~~~~  104 (141)
T 3bro_A           36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSG--KDSRQKCLKLTKKANKLE  104 (141)
T ss_dssp             HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS--SCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCC--cCCCeeeeEECHHHHHHH
Confidence            3445666665422 8999999999999   689999999999999999987420  000112577888776444

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=93.01  E-value=0.037  Score=43.48  Aligned_cols=67  Identities=15%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+ ++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEK--DERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCC--CcceeeeeEChHHHHHH
Confidence            35566677653 78999999999999   6899999999999999999874210  00113578888887554

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=93.01  E-value=0.2  Score=39.74  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=49.5

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee--ccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST--TKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+ ++.|..+||+.+++   ++..+.+.++.|...|+|.+  ....  .|.-.-.+.+|+.|..+.
T Consensus        43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~--~d~R~~~~~LT~~G~~~~  111 (154)
T 2qww_A           43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIP--NDSMDLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--C--TTCTTCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCC--CCCceeEeEECHHHHHHH
Confidence            45567777664 68999999999999   68999999999999999998  4310  001112588898887544

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=92.98  E-value=0.049  Score=42.94  Aligned_cols=68  Identities=9%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|..+ ++.|..+||+.+++   ++..+.++++.|...|+|.+....  .|.-.-.+.+|+.|+.+.
T Consensus        32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGE--QDRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCS--SCGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCC--CCCceeeeeEChhHHHHH
Confidence            345567777554 68999999999999   689999999999999999986420  000113588898887554

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.96  E-value=0.034  Score=43.54  Aligned_cols=68  Identities=12%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|+.+.
T Consensus        37 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~--d~R~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           37 QQWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPK--DQRRVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCC--CCCeeEEEECHHHHHHH
Confidence            345566677654 68999999999999   6899999999999999999874100  00012377888777544

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=92.92  E-value=0.05  Score=41.55  Aligned_cols=48  Identities=17%  Similarity=0.372  Sum_probs=40.7

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      -.++.|+..|..  ++.|..+||+.+++   ++..+.+.|+.|...|++....
T Consensus        32 ~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~   79 (119)
T 2lkp_A           32 PSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR   79 (119)
T ss_dssp             HHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            445666677765  58999999999999   6899999999999999998764

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.92  E-value=0.066  Score=42.20  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=50.6

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ..++.++..|..++++.|..+||+.+++   ++..+.+.++.|...|+|.+....  .|.-.-.+.+|+.|..+.
T Consensus        35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~--~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           35 FSQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP--QDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCC--CCCCceeeEECHHHHHHH
Confidence            3456677777651278999999999999   689999999999999999987410  001112478888877544

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=92.86  E-value=0.094  Score=41.92  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|...+++.+..+||+.+++   ++..+.++++.|...|+|.+.....  |.=.-.+.+|+.|+.+.
T Consensus        34 ~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~--DrR~~~l~LT~~G~~~~  100 (151)
T 4aik_A           34 WVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSAN--DRRAKRIKLTEQSSPII  100 (151)
T ss_dssp             HHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCC--CCcchhhhcCHHHHHHH
Confidence            3345555544466788999999999   6899999999999999999875210  00012478898887555

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=92.83  E-value=0.07  Score=38.98  Aligned_cols=52  Identities=10%  Similarity=0.133  Sum_probs=40.4

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.|..+||+.+++   ++..+.++++.|...|+|.....     .-...+++|+.|..+.
T Consensus        30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~d-----~R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECELE-----GRTKIIRLTDKGQKIA   81 (95)
T ss_dssp             CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCCC-----CCeEEEEEChhHHHHH
Confidence            4899999999999   68999999999999999943320     0012588998887554

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=92.81  E-value=0.039  Score=43.43  Aligned_cols=68  Identities=12%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.++++.|...|+|.+....  .|.-.-.+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~  105 (143)
T 3oop_A           38 EQWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREIST--EDRRISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC------CCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCC--ccCceeeeeECHHHHHHH
Confidence            345566777654 78999999999999   689999999999999999987421  001123578888877554

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=92.72  E-value=0.049  Score=42.48  Aligned_cols=68  Identities=12%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|..+.
T Consensus        39 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~--d~R~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           39 TQWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPD--DGRRLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCC--CCCeeeeEECHhHHHHH
Confidence            356677777654 68999999999999   6899999999999999999863100  00012478888877544

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=92.59  E-value=0.085  Score=41.71  Aligned_cols=67  Identities=9%  Similarity=0.146  Sum_probs=41.8

Q ss_pred             cCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|..++ ++.|..+||+.+++   ++..+.+.++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        44 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~--DrR~~~~~LT~~G~~~~  111 (148)
T 3jw4_A           44 GRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPEN--NARQKNIYVLPKGAALV  111 (148)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCC--CchhheeeECHHHHHHH
Confidence            44566665532 68999999999999   6789999999999999999874200  00012467787777544

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=92.56  E-value=0.088  Score=41.32  Aligned_cols=66  Identities=9%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|. . ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|..+.
T Consensus        39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~--~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDR--EDRRKILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS--SCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCC--CCCceEEEEECHHHHHHH
Confidence            455666776 3 79999999999999   689999999999999999987420  001112478888777444

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=92.54  E-value=0.077  Score=42.30  Aligned_cols=67  Identities=13%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|+|.+....  .|.-.-.+.+|+.|+.+.
T Consensus        45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~--~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADA--KDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC--CcCCeeEeEECHHHHHHH
Confidence            45567777654 68999999999999   689999999999999999986410  000113478888877544

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=92.51  E-value=0.053  Score=42.20  Aligned_cols=67  Identities=16%  Similarity=0.292  Sum_probs=48.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|..+.
T Consensus        31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~--d~R~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPE--NRRRYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHTH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCC--CceeEEeeECHhHHHHH
Confidence            34456666553 78999999999999   6899999999999999999864100  00012377888776444

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.41  E-value=0.11  Score=40.81  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             cCccccc-ccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDII-HKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L-~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..| .. +++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|..+.
T Consensus        40 ~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~--~d~R~~~~~lT~~G~~~~  106 (146)
T 2fbh_A           40 WLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA--EDRRAKHIVLTPKADVLI  106 (146)
T ss_dssp             HHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB--TTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCC--cccCeeeeEECHhHHHHH
Confidence            4456666 43 378999999999999   689999999999999999987410  001112477888776444

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=92.32  E-value=0.069  Score=41.55  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=48.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+ ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|+.+.
T Consensus        36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~--d~R~~~~~lT~~G~~~~  102 (138)
T 1jgs_A           36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPN--DKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTT--CSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcc--cCceeEeEEChhHHHHH
Confidence            34455666543 68999999999999   6899999999999999999864200  00112478888877554

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=92.31  E-value=0.058  Score=42.37  Aligned_cols=67  Identities=15%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|+.+.
T Consensus        35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~--d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPA--DRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCC--CCceEEEEECHHHHHHH
Confidence            45566677553 68999999999999   6899999999999999999874100  00012477888877544

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=92.20  E-value=0.056  Score=42.38  Aligned_cols=68  Identities=12%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~--~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           38 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSE--VDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECS--SSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC--CCcceEEEEEChHHHHHH
Confidence            345566777654 68999999999999   578999999999999999987520  001112577888877444

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=92.13  E-value=0.059  Score=42.30  Aligned_cols=66  Identities=11%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|..+.
T Consensus        32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~--d~R~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDAS--NKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS--CTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCC--CCceeeeEEChhHHHHH
Confidence            4456666654 68999999999999   6899999999999999999874210  00112478888877544

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=92.12  E-value=0.15  Score=41.32  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             HHcCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|..+ +++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~  116 (168)
T 3u2r_A           47 QQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPE--NRRVVEVALTDAGLKLL  116 (168)
T ss_dssp             HHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCC--CCCeeEeEECHHHHHHH
Confidence            345566667654 268999999999999   6789999999999999999874200  00001477888877554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=92.10  E-value=0.37  Score=44.18  Aligned_cols=121  Identities=11%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C---CC--CccEEEecchhccCC
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSI-KCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---IP--SADAFLFKLIFHDYD  266 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~~--~~D~i~~~~vlh~~~  266 (359)
                      .+|+|+-||.|.++..+..+.-+. .+.++|. +.+++..+. .+...++.+|+.+ .   ++  .+|+++...-...++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            589999999999999999885322 4778888 555554443 3445677888876 2   22  589999886654443


Q ss_pred             hh--------HHHHHHHHHH---HhcC--CCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          267 DE--------VCLKLLKNCR---EAVA--SSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       267 d~--------~~~~iL~~~~---~~L~--p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      ..        ..-.++.++.   +.++  |     +++++|.+..-..                     +  .+.+.+.+
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P-----~~~~~ENV~~l~~---------------------~--~~~~~i~~  134 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRLQKLP-----KYILLENVKGFEV---------------------S--STRDLLIQ  134 (343)
T ss_dssp             -------------CHHHHHHHHGGGCSSCC-----SEEEEEEETTGGG---------------------S--HHHHHHHH
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHhcCCC-----CEEEEeCCccccC---------------------H--HHHHHHHH
Confidence            21        1112333333   3444  5     5777777642110                     0  14567888


Q ss_pred             HHHhcCCceee
Q 043623          334 LFFDAGFTSYK  344 (359)
Q Consensus       334 ll~~aGf~~~~  344 (359)
                      .|++.||.+..
T Consensus       135 ~l~~~GY~v~~  145 (343)
T 1g55_A          135 TIENCGFQYQE  145 (343)
T ss_dssp             HHHHTTEEEEE
T ss_pred             HHHHCCCeeEE
Confidence            88999988654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=92.08  E-value=0.22  Score=43.67  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH-------CCCCeEEEeec----hHH------------------------Hh-------
Q 043623          194 GLSSLVEVGGGTGSFARIISEA-------FPSIKCSVLEL----PHV------------------------IA-------  231 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------i~-------  231 (359)
                      -+..|+|+|+-.|..+..++..       .++.++.++|.    |+.                        ++       
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            3579999999999988886652       46789999994    321                        00       


Q ss_pred             cCCC----CCCceEEeCCCCC--C-----CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          232 DLPE----TDNLKFIAGDMNQ--S-----IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       232 ~a~~----~~rv~~~~~d~~~--~-----~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      +.+.    .++|+++.|++.+  +     .+  .+|++.+-.=.    -+.....+..+...|+|   ||.|++-|
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~---GGvIv~DD  217 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTK---GSIVAFDE  217 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCC---CcEEEEcC
Confidence            0011    4789999999876  2     22  37888776521    23356789999999999   55554444

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=92.05  E-value=0.072  Score=42.78  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+....  .|.-...+.+|+.|+.+.
T Consensus        51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~--~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHG--DDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCC--CCCCeeEEEECHHHHHHH
Confidence            45567777654 78999999999999   689999999999999999986410  000113477888776444

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=92.05  E-value=0.069  Score=42.46  Aligned_cols=68  Identities=16%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ++.++..|... ++.|..+||+.+++   +...+.+.++.|...|+|.+....  .|.-.-.+.+|+.|+.+..
T Consensus        49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~--~d~R~~~~~lT~~G~~~~~  116 (153)
T 2pex_A           49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAA--SDERQVIIALTETGRALRS  116 (153)
T ss_dssp             HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGGG
T ss_pred             HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCc--ccCCeeEeeECHHHHHHHH
Confidence            45566777654 78999999999999   689999999999999999987410  0000125888988875553

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=92.02  E-value=0.089  Score=38.48  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             HcCcccccccCCCCCCHHHHHh-hcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVS-ALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~-~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ++.|+-.|... ++.|..+||+ ..++   +...+.|=++.|...|+|+.++        ++ +.+|+.|+.+..
T Consensus        18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~--------~D-l~LT~~G~~~l~   79 (95)
T 1bja_A           18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG--------DG-LIITGEAQDIIS   79 (95)
T ss_dssp             HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET--------TE-EEECHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC--------CC-eeeCHhHHHHHH
Confidence            34556667665 5999999999 9999   7889999999999999999433        34 999998885553

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=91.98  E-value=0.05  Score=40.94  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=37.5

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +.|+..|...|.+.|..+||+.+|+   +...+++.|..|...|+|...
T Consensus        21 l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           21 IDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             HHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            3455555322348999999999999   689999999999999999877

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=91.97  E-value=0.098  Score=41.08  Aligned_cols=67  Identities=18%  Similarity=0.283  Sum_probs=46.7

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.|+..|... + .|..+||+.+++   ++..+.+.++.|...|+|.+....  .|.-.-.+.+|+.|..+.
T Consensus        39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~--~d~R~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           39 TQEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDS--KDARVIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC------------CCEECGGGHHHH
T ss_pred             HHHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCC--CCCceeEEEECHhHHHHH
Confidence            445566777653 4 999999999999   689999999999999999986410  001123577888776444

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=91.72  E-value=0.064  Score=43.07  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|... ++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEK--DRRSYRVFLTEKGKKLE  118 (159)
T ss_dssp             HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC-----CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC--CCCeeEEEECHHHHHHH
Confidence            3346666554 78999999999999   6899999999999999999875210  00012577888877554

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=91.72  E-value=0.05  Score=40.23  Aligned_cols=59  Identities=8%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      .++.|+..|... ++.++.+||+.+|+   ++..+.+.|+.|... ++.....     |-.-.|++++.
T Consensus        28 ~Rl~IL~~l~~~-~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~-----gr~~~y~l~~~   86 (99)
T 2zkz_A           28 MRLKIVNELYKH-KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ-----GLEIYYSINNP   86 (99)
T ss_dssp             HHHHHHHHHHHH-SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE-----TTEEEEECCCH
T ss_pred             HHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe-----CcEEEEEEChH
Confidence            344455333222 78999999999999   689999999999999 9986642     11235777764

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=91.62  E-value=0.12  Score=40.62  Aligned_cols=69  Identities=13%  Similarity=0.256  Sum_probs=50.9

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+....  .|.-.-.+.+|+.|..+..
T Consensus        41 ~~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~--~d~R~~~~~LT~~G~~~~~  109 (147)
T 1z91_A           41 PQYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSE--EDERSVLISLTEDGALLKE  109 (147)
T ss_dssp             HHHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCS--SCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCC--CCCCeeEEEECHhHHHHHH
Confidence            345566666553 68999999999999   689999999999999999987421  0011134888998885554

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=91.61  E-value=0.1  Score=41.52  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|+.+.
T Consensus        45 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~--~d~R~~~~~lT~~G~~~~  112 (154)
T 2eth_A           45 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP--VDRRTYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT--TTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC--CCcceeEEEECHHHHHHH
Confidence            355667777654 68999999999999   689999999999999999986410  000112477888877544

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=91.59  E-value=0.072  Score=42.82  Aligned_cols=67  Identities=13%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.+.++.|...|++.+.....  |.-.-.+.+|+.|+.+.
T Consensus        54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~--d~R~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSD--DQRSSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC----CCSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCC--CCCeeEEEECHHHHHHH
Confidence            45567777664 68999999999999   6899999999999999999864100  00113478888776444

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=91.35  E-value=0.079  Score=39.20  Aligned_cols=47  Identities=17%  Similarity=0.371  Sum_probs=39.0

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|+..|... ++.|..+||+.+++   ++..+.+.|+.|...|+|....
T Consensus        22 ~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~   68 (109)
T 1sfx_A           22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence            34455555442 68999999999999   6899999999999999999875

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=90.94  E-value=0.37  Score=40.67  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~  116 (207)
T 2fxa_A           50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLN--DKRNTYVQLTEEGTEVF  116 (207)
T ss_dssp             HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC--------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC--CCceEEEEECHHHHHHH
Confidence            34556667554 68999999999999   6899999999999999999875200  00012578899887554

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=90.88  E-value=0.059  Score=46.60  Aligned_cols=51  Identities=10%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST   85 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~   85 (359)
                      .+|.--.++.|+..|..  +|.|+.+||+.+|+   ++..+.+.|+.|...|+|..
T Consensus         7 kaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~   57 (232)
T 2qlz_A            7 YILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQS   57 (232)
T ss_dssp             HHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEE
Confidence            34444556667777874  79999999999999   68999999999999999998

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=90.82  E-value=0.17  Score=42.70  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC-CCCceEecCccc
Q 043623           31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE-EENEAYALTSAS  105 (359)
Q Consensus        31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~-~~~~~~~~t~~~  105 (359)
                      +|.--.++.|+..|..  +|.|..+||+.+++   ++..+.+.|+.|...|+|...... ... +..-.|++++.+
T Consensus        11 aL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~-~~~g~~~~~Y~Lt~~~   80 (202)
T 2p4w_A           11 VLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEK-IPRGRPRKYYMIKKGL   80 (202)
T ss_dssp             HHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC-BTTBCCCEEEEECTTE
T ss_pred             HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeec-cCCCCceEEEEEChHH
Confidence            3333444555556654  79999999999999   689999999999999999986421 001 112357776643

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=90.69  E-value=0.24  Score=39.60  Aligned_cols=101  Identities=17%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcccccccCC-CCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeeccccC--C
Q 043623           16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRG-RPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTTKVHN--S   91 (359)
Q Consensus        16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~   91 (359)
                      ..+....+.+.....+|         ..|..++ +..|+++|++.++ +   ++..+.+-|+.|...|+|.......  .
T Consensus        19 ~~~~~~~l~~~tR~~IL---------~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~   86 (151)
T 3u1d_A           19 ELERRRFVLHETRLDVL---------HQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKS   86 (151)
T ss_dssp             HHHHHHHHCCHHHHHHH---------HHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTT
T ss_pred             HHHHHHHhcchHHHHHH---------HHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcc
Confidence            44445544555444444         4443221 4689999999998 8   6899999999999999999663211  0


Q ss_pred             CCCC-CceEecCccch-hhhcCCCCChhHHHHHhcCccccchhhhHHHHHc
Q 043623           92 REEE-NEAYALTSASK-LLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLR  140 (359)
Q Consensus        92 ~~~~-~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~  140 (359)
                      ..+. ...|++|+.|+ .|....  .+.          ....|..|.+.+.
T Consensus        87 ~rGrP~k~Y~LT~~Gr~~l~~y~--~la----------~~~alr~l~~~v~  125 (151)
T 3u1d_A           87 VDDPPTTFYAVTGEGIALLRAVS--MYE----------EAAVWRSVYEQME  125 (151)
T ss_dssp             SSSCCCEEEEECHHHHHHHHHTT--CST----------HHHHTHHHHHHSC
T ss_pred             cCCCCceEEEECHHHHHHHHHhH--HHh----------HHHHHHHHHHHhh
Confidence            0111 12799999988 443322  111          1245666777764

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=90.60  E-value=0.33  Score=31.39  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=39.1

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +++|+-|+|..+++   +.+..+.-|+.|...|-+.+..         .+|++.|-
T Consensus        17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs---------SRYrlkph   60 (68)
T 3i71_A           17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS---------SRYRLKPH   60 (68)
T ss_dssp             TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECC-
T ss_pred             ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc---------cccccCcc
Confidence            68999999999999   5788999999999999999885         68998874

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=90.51  E-value=0.088  Score=43.67  Aligned_cols=73  Identities=22%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             HHHHHHHcCcccccccCCCCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhh
Q 043623           31 FLKCAVELGIPDIIHKRGRPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLL  108 (359)
Q Consensus        31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l  108 (359)
                      +|.-=.++.|+..|..  +|.|+.+||+.++ +   ++..+.+.|+.|...|+|+...+..+...-...|++++.+..+
T Consensus        19 ~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~   92 (182)
T 4g6q_A           19 LLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA   92 (182)
T ss_dssp             HTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred             HhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence            3334456777788865  7999999999996 8   4688999999999999998664211000012357777654433

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=90.23  E-value=0.17  Score=39.02  Aligned_cols=67  Identities=10%  Similarity=0.329  Sum_probs=48.4

Q ss_pred             cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|..+ +++.|..+||+.+++   ++..+.++++.|...|++.+....  .|.-.-.+.+|+.|+.+.
T Consensus        40 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~i~LT~~G~~~~  107 (127)
T 2frh_A           40 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNE--HDERTVLILVNAQQRKKI  107 (127)
T ss_dssp             HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCS--SSSCCCEEECCSHHHHHH
T ss_pred             HHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC--CCCCeeEEEECHHHHHHH
Confidence            4455555442 267999999999999   679999999999999999986421  011123578898887554

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=90.21  E-value=0.35  Score=35.65  Aligned_cols=52  Identities=12%  Similarity=0.254  Sum_probs=40.1

Q ss_pred             HHHHHHcCccc-ccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           32 LKCAVELGIPD-IIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        32 l~~a~~lglf~-~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +.-.++..|.+ .+.. |..+ |..+||+.+|+   +...+++-|+.|...|++....
T Consensus        16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~   69 (102)
T 1v4r_A           16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG   69 (102)
T ss_dssp             HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred             HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence            34444555665 3433 3555 99999999999   6799999999999999998875

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=89.82  E-value=0.31  Score=33.77  Aligned_cols=52  Identities=8%  Similarity=0.042  Sum_probs=40.6

Q ss_pred             ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      ++.|.. ++..|+.+||+++|+   ....+.|.|--|...|.|.....+      +-.|+.+
T Consensus        21 i~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~~~------PP~W~~~   72 (75)
T 1sfu_A           21 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPSN------PPKWFKN   72 (75)
T ss_dssp             HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECCS------SCEEEEC
T ss_pred             HHhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCCCC------CCCccCC
Confidence            346665 345999999999999   468899999999999999888532      4566654

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=89.53  E-value=0.077  Score=43.69  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=48.3

Q ss_pred             HcCcccccccCCCC--CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRP--VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~--~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|+..|..+++|  .|..+||+.+++   ++..+.+.++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDER--DRRSASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCC--CCCeeEEEECHHHHHHH
Confidence            45567777654333  999999999999   5789999999999999999874100  00012477888877544

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=89.42  E-value=0.75  Score=40.74  Aligned_cols=130  Identities=16%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             hChHHHHHHHHHhhc---CccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--
Q 043623          162 QNHEFNNLFNQGLAS---DSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--  235 (359)
Q Consensus       162 ~~~~~~~~f~~~~~~---~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--  235 (359)
                      +.+|+.....+.+..   .......+++.+.. + ....+||+=+|||.++++.+..  .-+++.+|. +..++..++  
T Consensus        58 ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl  133 (283)
T 2oo3_A           58 KTEEYKEGINPVWLDRENLPSLFLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLP  133 (283)
T ss_dssp             -CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSC
T ss_pred             hcHHHHHHHHHHHhcccCCcHHHHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHh
Confidence            455555555555441   11111344444331 2 3467899999999999999883  468999998 666554443  


Q ss_pred             --CCCceEEeCCCCC--C--CC---CccEEEecchhccCChhHHHHHHHHHHHh--cCCCCCCceEEEEeeecCCC
Q 043623          236 --TDNLKFIAGDMNQ--S--IP---SADAFLFKLIFHDYDDEVCLKLLKNCREA--VASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       236 --~~rv~~~~~d~~~--~--~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~--L~p~~~gG~lli~e~~~~~~  300 (359)
                        .++++++..|.++  .  .|   .||+|++-=-...-  .+..++++.+.+.  +.|   +|.++|.=++....
T Consensus       134 ~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k--~~~~~vl~~L~~~~~r~~---~Gi~v~WYPi~~~~  204 (283)
T 2oo3_A          134 HFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK--EEYKEIPYAIKNAYSKFS---TGLYCVWYPVVNKA  204 (283)
T ss_dssp             CTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST--THHHHHHHHHHHHHHHCT---TSEEEEEEEESSHH
T ss_pred             CcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCC--cHHHHHHHHHHHhCccCC---CeEEEEEEeccchH
Confidence              5789999999765  1  12   49999887544321  2344556555553  345   79999988876543

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=89.22  E-value=0.13  Score=36.35  Aligned_cols=50  Identities=18%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCC-CCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQP-NKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|+..|.. .++.|..+|++.++.++ -++..+.++|+.|...|+|.+..
T Consensus        11 e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~   61 (82)
T 1p6r_A           11 ELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK   61 (82)
T ss_dssp             HHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence            3445556654 27899999999997310 05789999999999999999885

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=89.02  E-value=0.23  Score=41.23  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             HHHcCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           35 AVELGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        35 a~~lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ..++.++..|..+ +++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.-.-.+.+|+.|..+..
T Consensus        41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~~  112 (189)
T 3nqo_A           41 SRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPH--DKRAINVKVTDLGKKVMV  112 (189)
T ss_dssp             HHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCC--CCCeeEEEECHHHHHHHH
Confidence            3456666677542 268999999999999   6899999999999999999875210  001135888998875553

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=89.02  E-value=0.27  Score=41.11  Aligned_cols=50  Identities=12%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             HHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +....+..|+..|..  ++.|..+||+.+|+   ++..+.+.|+.|...|++...
T Consensus        17 l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           17 MLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             hCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            334556677788873  78999999999999   689999999999999999987

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=88.97  E-value=0.19  Score=39.93  Aligned_cols=46  Identities=17%  Similarity=0.319  Sum_probs=39.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      ++.|+..|.. +++.|..+||+.+|+   ++..+.+.++.|...|++.+.
T Consensus         5 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   50 (150)
T 2pn6_A            5 DLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY   50 (150)
T ss_dssp             HHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence            4567777865 378999999999999   689999999999999999874

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=88.91  E-value=0.22  Score=39.38  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|++.|... ++.|..+||+++|+   ++..+.+.++.|...|++.+.
T Consensus         7 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   52 (144)
T 2cfx_A            7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY   52 (144)
T ss_dssp             HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            34566777653 78999999999999   689999999999999999865

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=88.90  E-value=0.21  Score=39.69  Aligned_cols=46  Identities=15%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|... ++.|..+||+++|+   ++..+.+.++.|...|++.+.
T Consensus         9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   54 (150)
T 2w25_A            9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY   54 (150)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            34566667653 78999999999999   689999999999999999765

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=88.59  E-value=0.24  Score=41.11  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=45.8

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCc-eeeccccCCCCCCCceEecCcc
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGF-FSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      .....|++.|.+.+++.|..+||+++|+   +.+.+++-++.|...|+ +....         +.|.+.+.
T Consensus        21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~~---------~Gy~l~~~   79 (187)
T 1j5y_A           21 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVATP---------RGYVLAGG   79 (187)
T ss_dssp             HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEET---------TEEECCTT
T ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEC---------CEEEECCc
Confidence            3455677778643367999999999999   68999999999999999 76643         56877753

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=88.45  E-value=1.9  Score=39.98  Aligned_cols=118  Identities=11%  Similarity=0.099  Sum_probs=75.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCceEEeCCCCC-C---C-------CCccEEEecch
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---I-------PSADAFLFKLI  261 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~-------~~~D~i~~~~v  261 (359)
                      .+++|+-||.|.++..+.++.  .+ +.++|. +.+++..+. .+...++.+|+.+ .   +       +.+|+++..--
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            589999999999999999884  44 458888 555544332 3456778888876 1   1       35899998776


Q ss_pred             hccCC--------hhHHHHHHH---HHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          262 FHDYD--------DEVCLKLLK---NCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       262 lh~~~--------d~~~~~iL~---~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                      +..++        |+. -.++.   ++.+.++|     +++|+|.+..-....                    .....++
T Consensus        81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P-----~~~v~ENV~gl~s~~--------------------~~~~~~~  134 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP-----LFFLAENVPGIMQEK--------------------YSGIRNK  134 (376)
T ss_dssp             CCTTC-------CHHH-HHHHHHHHHHHHHHCC-----SEEEEEECTTTTCGG--------------------GHHHHHH
T ss_pred             CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC-----CEEEEecchHhhccC--------------------cHHHHHH
Confidence            55554        222 22332   34445677     688888875432111                    0013556


Q ss_pred             HHHHHHhcCCce
Q 043623          331 WERLFFDAGFTS  342 (359)
Q Consensus       331 ~~~ll~~aGf~~  342 (359)
                      +. .|++.||.+
T Consensus       135 i~-~l~~~GY~v  145 (376)
T 3g7u_A          135 AF-NLVSGDYDI  145 (376)
T ss_dssp             HH-HHHHTTEEE
T ss_pred             HH-HHHcCCCcc
Confidence            66 788888887

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=88.40  E-value=0.099  Score=39.95  Aligned_cols=59  Identities=19%  Similarity=0.415  Sum_probs=44.0

Q ss_pred             cccccccCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHHhccCceeeccccCCCCCCCce---EecCccchhhh
Q 043623           40 IPDIIHKRGRPVTLPELVSALE----FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEA---YALTSASKLLL  109 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~---~~~t~~~~~l~  109 (359)
                      ++..|... ++.|..+||+.++    +   ++..+.++|+.|...|+|.+...       +..   +.+|+.++.+.
T Consensus        15 vL~~l~~~-~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~-------~rr~~~~~lT~~g~~~~   80 (123)
T 1okr_A           15 VMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD-------NKIFQYYSLVEESDIKY   80 (123)
T ss_dssp             HHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE-------TTEEEEEESSCHHHHHH
T ss_pred             HHHHHHhC-CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec-------CCeEEEEEecCHHHHHH
Confidence            34444332 6899999999999    6   47899999999999999998852       222   35777766554

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=88.37  E-value=0.13  Score=38.12  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCC-CCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQP-NKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|+..|-+. ++.|..||++.++.++ -++.-+.++|+.|...|+|.+..
T Consensus        37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~   87 (99)
T 2k4b_A           37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK   87 (99)
T ss_dssp             CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence            34566666543 6899999999998521 14678999999999999999886

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=88.36  E-value=0.21  Score=39.61  Aligned_cols=56  Identities=11%  Similarity=0.176  Sum_probs=43.0

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   ++..+.++++.|...|+|.+.....  |.=.-...+|+.|+.+.
T Consensus        50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~  105 (147)
T 4b8x_A           50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPN--DGRGTLATITDKGREVV  105 (147)
T ss_dssp             GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC------CEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCC--cCceeEEEECHHHHHHH
Confidence            68999999999999   6899999999999999999885210  00012477888887554

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=88.32  E-value=0.29  Score=35.99  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=33.8

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|..+||+.+|+   +...+.+.|+.|...|++.+..
T Consensus        35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~   70 (109)
T 2d1h_A           35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence            78999999999999   6899999999999999999875

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=88.22  E-value=0.58  Score=42.57  Aligned_cols=122  Identities=13%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCe-E-EEeec-hHHHhcCCC-CCCceEEeCCCCC-C---CC--CccEEEecchhc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIK-C-SVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---IP--SADAFLFKLIFH  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~~--~~D~i~~~~vlh  263 (359)
                      ...+++|+-||.|.+...+.++.-+.+ + .++|+ +.+++..+. .+.. ++.+|+.+ .   ++  .+|+++.+.-..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ   87 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ   87 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence            346899999999999999988753234 4 58888 555443332 1111 55677776 2   23  489999876655


Q ss_pred             cC-----------ChhHHHHHHHHHHH----hc--CCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623          264 DY-----------DDEVCLKLLKNCRE----AV--ASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER  326 (359)
Q Consensus       264 ~~-----------~d~~~~~iL~~~~~----~L--~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (359)
                      .+           .|+. -.++..+.+    .+  +|     +++++|.+..-..                     +  .
T Consensus        88 ~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P-----~~~~lENV~gl~~---------------------~--~  138 (327)
T 3qv2_A           88 PYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKP-----KHIFIENVPLFKE---------------------S--L  138 (327)
T ss_dssp             TCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCC-----SEEEEEECGGGGG---------------------S--H
T ss_pred             CcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCC-----CEEEEEchhhhcC---------------------h--H
Confidence            55           2332 244555555    34  45     6888887642110                     0  1


Q ss_pred             CHHHHHHHHHhcCCceeeE
Q 043623          327 SEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~  345 (359)
                      +.+.+.+.|++.||.+...
T Consensus       139 ~~~~i~~~l~~~GY~v~~~  157 (327)
T 3qv2_A          139 VFKEIYNILIKNQYYIKDI  157 (327)
T ss_dssp             HHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEE
Confidence            4677888899999986543

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=88.05  E-value=0.26  Score=39.79  Aligned_cols=46  Identities=15%  Similarity=0.266  Sum_probs=38.9

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|... ++.|..+||+++|+   ++..+.+.++.|...|++.+.
T Consensus        12 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   57 (162)
T 2p5v_A           12 DIKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY   57 (162)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence            34566667653 78999999999999   689999999999999999865

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=87.98  E-value=1.7  Score=39.16  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             CeEEEEcCCch--HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCCCccEEEecchhccCChhHHH
Q 043623          196 SSLVEVGGGTG--SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVCL  271 (359)
Q Consensus       196 ~~vlDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~  271 (359)
                      .+|.=||+|.=  .++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ...++|+|+++-     +.....
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~~  108 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR  108 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHHH
Confidence            68999998752  34444555433338999998 5555544332222222233333 344689998873     444567


Q ss_pred             HHHHHHHHhcCC
Q 043623          272 KLLKNCREAVAS  283 (359)
Q Consensus       272 ~iL~~~~~~L~p  283 (359)
                      ++++++...++|
T Consensus       109 ~vl~~l~~~l~~  120 (314)
T 3ggo_A          109 EIAKKLSYILSE  120 (314)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             HHHHHHhhccCC
Confidence            789999999998

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=87.68  E-value=0.26  Score=39.15  Aligned_cols=46  Identities=20%  Similarity=0.319  Sum_probs=39.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|.. +++.|..+||+.+|+   ++..+.+.++.|...|++.+.
T Consensus        11 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   56 (151)
T 2dbb_A           11 DMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF   56 (151)
T ss_dssp             HHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence            4456677765 378999999999999   689999999999999999865

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=87.58  E-value=0.26  Score=39.30  Aligned_cols=46  Identities=11%  Similarity=0.244  Sum_probs=39.1

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|... ++.|..+||+++|+   ++..+.+.++.|...|++...
T Consensus        10 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   55 (152)
T 2cg4_A           10 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA   55 (152)
T ss_dssp             HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence            34566677653 78999999999999   689999999999999999965

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=87.57  E-value=0.26  Score=41.27  Aligned_cols=39  Identities=15%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             cCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           46 KRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        46 ~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++|.|.|..|||+.+|++   ...+.+.|+.|...|++.+..
T Consensus        20 ~~g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~   58 (196)
T 3k2z_A           20 KNGYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN   58 (196)
T ss_dssp             HHSSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred             HhCCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence            334689999999999994   568999999999999999875

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=87.21  E-value=2.2  Score=38.61  Aligned_cols=120  Identities=13%  Similarity=0.124  Sum_probs=72.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCceEEeCCCCC----CCCCccEEEecchhccCC-
Q 043623          195 LSSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-TDNLKFIAGDMNQ----SIPSADAFLFKLIFHDYD-  266 (359)
Q Consensus       195 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~----~~~~~D~i~~~~vlh~~~-  266 (359)
                      ..+++|+-||.|.++..+..+.  .+ +.++|. +.+++..+. .+...  .+|+.+    ..+.+|+++...-+..++ 
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~   86 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI   86 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence            4689999999999999998864  44 566787 555443322 11111  567665    245689998876554443 


Q ss_pred             --------hhH---HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623          267 --------DEV---CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF  335 (359)
Q Consensus       267 --------d~~---~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll  335 (359)
                              |+.   ...+++ +.+.++|     +++++|.+..-...                    ....+.+.+.+.|
T Consensus        87 ag~~~g~~d~r~~L~~~~~r-~i~~~~P-----~~~~~ENV~gl~~~--------------------~~~~~~~~i~~~l  140 (327)
T 2c7p_A           87 SGKQKGFEDSRGTLFFDIAR-IVREKKP-----KVVFMENVKNFASH--------------------DNGNTLEVVKNTM  140 (327)
T ss_dssp             TSCCCGGGSTTSCHHHHHHH-HHHHHCC-----SEEEEEEEGGGGTG--------------------GGGHHHHHHHHHH
T ss_pred             hcccCCCcchhhHHHHHHHH-HHHhccC-----cEEEEeCcHHHHhc--------------------cccHHHHHHHHHH
Confidence                    221   122333 4445677     68888876432110                    0112467788889


Q ss_pred             HhcCCceee
Q 043623          336 FDAGFTSYK  344 (359)
Q Consensus       336 ~~aGf~~~~  344 (359)
                      ++.||.+..
T Consensus       141 ~~~GY~v~~  149 (327)
T 2c7p_A          141 NELDYSFHA  149 (327)
T ss_dssp             HHTTBCCEE
T ss_pred             HhCCCEEEE
Confidence            999988644

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=87.08  E-value=0.24  Score=38.82  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|+..|.. +++.|..+||+.+|+   ++..+.+.|+.|...|++.+..
T Consensus         7 ~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~   52 (141)
T 1i1g_A            7 KIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT   52 (141)
T ss_dssp             HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred             HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence            445666654 368999999999999   6899999999999999997653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=87.00  E-value=1  Score=45.07  Aligned_cols=95  Identities=20%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHC-------CC-----CeEEEeec----hHHHhc-CC-----------------C----
Q 043623          194 GLSSLVEVGGGTGSFARIISEAF-------PS-----IKCSVLEL----PHVIAD-LP-----------------E----  235 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~i~~-a~-----------------~----  235 (359)
                      +.-+|+|+|-|+|.......+.+       |+     ++++.++.    ++.+.. ..                 .    
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34699999999998888765542       32     46888885    233321 11                 0    


Q ss_pred             -------C--CCceEEeCCCCC---CC-----CCccEEEecchh-ccCChhHHHHHHHHHHHhcCCCCCCceEE
Q 043623          236 -------T--DNLKFIAGDMNQ---SI-----PSADAFLFKLIF-HDYDDEVCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       236 -------~--~rv~~~~~d~~~---~~-----~~~D~i~~~~vl-h~~~d~~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                             .  -+++..-+|+.+   .+     ..+|++++-..- ..-++.-...+++.+.+.++|   ||.+.
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~  216 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLA  216 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEEE
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEEE
Confidence                   1  123455677654   12     238998874421 111121234678999999999   77655

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=86.84  E-value=0.25  Score=39.38  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|... ++.|..+||+++|+   ++..+.+.++.|...|++...
T Consensus         9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~   54 (151)
T 2cyy_A            9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF   54 (151)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            34566677653 78999999999999   689999999999999999865

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=86.74  E-value=0.34  Score=39.60  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|... ++.|..+||+++|+   ++..+.+.++.|...|++.+.
T Consensus        19 d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~   64 (171)
T 2ia0_A           19 DRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY   64 (171)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence            34567777653 78999999999999   689999999999999999865

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=86.74  E-value=0.56  Score=39.27  Aligned_cols=49  Identities=20%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +|++..+||+.+++   .+..++..++.|...|+++...         +...+|+.|+.++
T Consensus        29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~---------~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ---------RGHFLTLKGKEIR   77 (200)
T ss_dssp             SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred             CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC---------CCeEECHHHHHHH
Confidence            58999999999999   6899999999999999999885         6799999887444

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=86.68  E-value=0.69  Score=39.61  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ++.|..++|+++++   ++..+.+.++.|...|+|.+...     .....+++|+.|+.+..
T Consensus        26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~-----~R~~~v~LT~~G~~l~~   79 (230)
T 3cta_A           26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT-----KRGQILNITEKGLDVLY   79 (230)
T ss_dssp             EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHHHHHH
T ss_pred             CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEc-----CCeEEEEECHHHHHHHH
Confidence            57999999999999   68999999999999999999821     00257899999885553

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=86.49  E-value=0.33  Score=39.19  Aligned_cols=47  Identities=11%  Similarity=0.269  Sum_probs=40.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      .+..|++.|.. +++.|..+||+++|+   ++..+++-++.|...|++.+-
T Consensus         4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~   50 (162)
T 3i4p_A            4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR   50 (162)
T ss_dssp             HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence            34567788876 489999999999999   689999999999999999854

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=86.31  E-value=1.3  Score=34.49  Aligned_cols=36  Identities=17%  Similarity=0.458  Sum_probs=33.4

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +|.|..+||+.+|+   ++..+.+.|+.|...|++.+..
T Consensus        40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~   75 (152)
T 1ku9_A           40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW   75 (152)
T ss_dssp             SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            68999999999999   6789999999999999999863

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=86.14  E-value=0.74  Score=34.06  Aligned_cols=43  Identities=9%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             ccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           41 PDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        41 f~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +..|.. |+.. |..+||+.+|+   +..-+++-|+.|...|+|....
T Consensus        34 ~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~   77 (102)
T 2b0l_A           34 FEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS   77 (102)
T ss_dssp             TTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            344443 3445 99999999999   6899999999999999999775

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=86.05  E-value=0.34  Score=42.32  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=49.9

Q ss_pred             HcCcccccccCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGR-PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~-~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+++ +.|..+||+.+++   ++..+.++++.|...|+|.+....+  |.=.-...+|+.|+.+.
T Consensus       160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~--DrR~~~i~LT~~G~~~~  228 (250)
T 1p4x_A          160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTE--DERKILIHMDDAQQDHA  228 (250)
T ss_dssp             HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSS--STTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCC--CCCeEEEEECHHHHHHH
Confidence            3556777765432 5999999999999   6899999999999999999985210  00012577788877554

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=85.87  E-value=0.42  Score=37.12  Aligned_cols=51  Identities=16%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             HHHHcCcccccccCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623           34 CAVELGIPDIIHKRGRPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        34 ~a~~lglf~~L~~~~~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +.-+.-|++.|...+++.|++||.+.+     ++   +..-+-|.|+.|+..|++.+..
T Consensus        10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~   65 (131)
T 2o03_A           10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLH   65 (131)
T ss_dssp             HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEE
Confidence            344566677776545799999999998     67   6789999999999999999875

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=85.55  E-value=0.3  Score=31.57  Aligned_cols=47  Identities=13%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +-.|++.+..+||-..++..|+..|+   +...+-.+|+.|.+.|++.-+
T Consensus        12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le   58 (59)
T 2xvc_A           12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE   58 (59)
T ss_dssp             HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence            34567778777899999999999999   578999999999999998754

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=85.51  E-value=0.47  Score=37.58  Aligned_cols=55  Identities=18%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   ++..+.++++.|...|+|....+   .|.=.-...+|+.|+.+.
T Consensus        51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~---~DrR~~~v~LT~~G~~~~  105 (148)
T 4fx0_A           51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAG---ADARCKRIELTAKGRAAL  105 (148)
T ss_dssp             ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred             CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC---CCCCeeEEEECHHHHHHH
Confidence            46899999999999   68999999999999999954321   011012467787777444

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=85.51  E-value=0.74  Score=39.37  Aligned_cols=49  Identities=10%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.+..+||+.+++   ++..+.+.++.|...|++.+..        ...+.+|+.|+.+.
T Consensus        24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~   72 (226)
T 2qq9_A           24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLA   72 (226)
T ss_dssp             CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHH
T ss_pred             CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHH
Confidence            3456999999999   6899999999999999999986        46799999987554

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=85.36  E-value=0.74  Score=36.38  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      --+.-|++.|...+++.|++||.+.+     ++   +..-+-|.|+.|...|++.+..
T Consensus        22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~   76 (145)
T 2fe3_A           22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELT   76 (145)
T ss_dssp             HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEe
Confidence            34455777775545799999999998     66   6789999999999999999875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=85.27  E-value=0.67  Score=46.66  Aligned_cols=119  Identities=19%  Similarity=0.212  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHC-------CC-----CeEEEeec-h---HHHhcC-C----------------------
Q 043623          194 GLSSLVEVGGGTGSFARIISEAF-------PS-----IKCSVLEL-P---HVIADL-P----------------------  234 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~i~~a-~----------------------  234 (359)
                      +.-+|+|+|.|+|.......+.+       |+     ++++.++. |   +.+..+ .                      
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44699999999999888776642       33     56888885 2   222210 0                      


Q ss_pred             ------CCC--CceEEeCCCCC--C-C-----CCccEEEecchh-ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          235 ------ETD--NLKFIAGDMNQ--S-I-----PSADAFLFKLIF-HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       235 ------~~~--rv~~~~~d~~~--~-~-----~~~D~i~~~~vl-h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                            ...  ++++..||+.+  + +     ..+|++++-..- ..-++.-...+++.+.+.++|   ||++.-.-   
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~---  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT---  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence                  012  34567788765  2 2     238888874321 111111124678888888998   67654211   


Q ss_pred             CCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623          298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  347 (359)
                                                   .....++.|.++||.+.++..
T Consensus       212 -----------------------------~~~~vr~~l~~aGf~~~~~~~  232 (689)
T 3pvc_A          212 -----------------------------AAGFVRRGLQQAGFNVTKVKG  232 (689)
T ss_dssp             -----------------------------CCHHHHHHHHHTTCEEEEEEC
T ss_pred             -----------------------------CcHHHHHHHHhCCeEEEeccC
Confidence                                         123457778889998776553

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=85.15  E-value=1.1  Score=41.92  Aligned_cols=56  Identities=9%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHH-HHCCC-CeEEEeec-hHHHhcCCC---------C-CCceEEeCCCCC
Q 043623          193 DGLSSLVEVGGGTGSFARIIS-EAFPS-IKCSVLEL-PHVIADLPE---------T-DNLKFIAGDMNQ  248 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~i~~a~~---------~-~rv~~~~~d~~~  248 (359)
                      +++..|+|||++.|.++..++ +..+. .+++.++. |...+.+++         . ++|+++..-..+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            577899999999999999988 66665 79999997 655443321         2 567766554443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.02  E-value=3.3  Score=36.39  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=52.2

Q ss_pred             CeEEEEcCCch--HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHH
Q 043623          196 SSLVEVGGGTG--SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLK  272 (359)
Q Consensus       196 ~~vlDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~  272 (359)
                      .+|.=||+|.=  .++..+.+..++.++++.|. ++..+.+.+...+.....|..+...+.|+|+++-     ++.....
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~   81 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID   81 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence            57888998873  34445556555678999997 5444433221111122233333334589998874     4444567


Q ss_pred             HHHHHHHh-cCCCCCCceEEE
Q 043623          273 LLKNCREA-VASSDGREKVII  292 (359)
Q Consensus       273 iL~~~~~~-L~p~~~gG~lli  292 (359)
                      +++.+.+. +++    +.+++
T Consensus        82 v~~~l~~~~l~~----~~ivi   98 (290)
T 3b1f_A           82 FIKILADLDLKE----DVIIT   98 (290)
T ss_dssp             HHHHHHTSCCCT----TCEEE
T ss_pred             HHHHHHhcCCCC----CCEEE
Confidence            78888887 887    45554

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=84.98  E-value=0.65  Score=39.82  Aligned_cols=48  Identities=10%  Similarity=0.215  Sum_probs=41.5

Q ss_pred             CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           51 VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        51 ~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .+..+||+.+++   ++..+.+.|+.|...|++.+..        +..+.+|+.|+.+.
T Consensus        25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~   72 (230)
T 1fx7_A           25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALA   72 (230)
T ss_dssp             CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHH
T ss_pred             CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHH
Confidence            344999999999   6899999999999999999986        46799999887554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=84.93  E-value=0.75  Score=40.20  Aligned_cols=39  Identities=8%  Similarity=0.079  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL  233 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a  233 (359)
                      .++..|||..||+|..+....+.  +.+++++|+ +..++.+
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~  250 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA  250 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence            56789999999999999998876  568999999 6666544

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=84.64  E-value=0.65  Score=35.90  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|.++||+.+++   ++..+.+.++.|...|++.+..
T Consensus        51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~   85 (128)
T 2vn2_A           51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE   85 (128)
T ss_dssp             SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred             CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            3799999999999   6899999999999999999975

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=84.16  E-value=0.59  Score=36.59  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=32.9

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ...|.++||+++|+   ++..+.++|+.|...|++....
T Consensus        50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~~   85 (135)
T 2v79_A           50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIEE   85 (135)
T ss_dssp             CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence            45899999999999   6899999999999999999853

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=83.65  E-value=1.3  Score=33.48  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=49.8

Q ss_pred             HHHHHcCcccccccCCCCCCHHHHHhhcC--------CCCCCc-chHHHHHHHHhccCceeeccccCCCCC-CCceEecC
Q 043623           33 KCAVELGIPDIIHKRGRPVTLPELVSALE--------FQPNKR-NCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALT  102 (359)
Q Consensus        33 ~~a~~lglf~~L~~~~~~~t~~~LA~~~~--------~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t  102 (359)
                      .-..++-|+..|..  +|.+.-+|++.++        +   ++ ..+.+.|+.|...|+|+......  ++ ..-.|++|
T Consensus        11 ~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~--~~~~r~~Y~LT   83 (118)
T 2esh_A           11 GWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTT--VSPPRKIYRIT   83 (118)
T ss_dssp             HHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECS--SSSCEEEEEEC
T ss_pred             cchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecC--CCCCceEEEEC
Confidence            33445556666665  7899999999883        5   67 89999999999999998774210  11 12368999


Q ss_pred             ccchhhh
Q 043623          103 SASKLLL  109 (359)
Q Consensus       103 ~~~~~l~  109 (359)
                      +.|+.+.
T Consensus        84 ~~G~~~l   90 (118)
T 2esh_A           84 PQGKLYL   90 (118)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            9988444

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=82.84  E-value=0.41  Score=34.70  Aligned_cols=46  Identities=13%  Similarity=0.216  Sum_probs=36.9

Q ss_pred             CcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           39 GIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        39 glf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|+..|..++ .+++..+||+++++   +..-+.++|+.|...|++.+..
T Consensus        24 ~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~   70 (91)
T 2dk5_A           24 LVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK   70 (91)
T ss_dssp             HHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            3444554321 47999999999999   6899999999999999999654

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=82.08  E-value=1.3  Score=33.61  Aligned_cols=72  Identities=24%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             HHHHHHcCcccccccCCCCCCHHHHHhhc------CCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCcc
Q 043623           32 LKCAVELGIPDIIHKRGRPVTLPELVSAL------EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSA  104 (359)
Q Consensus        32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~  104 (359)
                      ++-.+++=|+..|..  +|.+.-+|++.+      ++   ++..+-..|+.|...|+|+..... .+.+ ..-.|++|+.
T Consensus         8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~-~~~g~~rk~Y~LT~~   81 (117)
T 4esf_A            8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKP-SDMGPPRKFYSLNEA   81 (117)
T ss_dssp             HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC------CEEEEEECHH
T ss_pred             HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeec-CCCCCCceEEEECHH
Confidence            333444444555665  789999999887      56   678999999999999999976310 0000 1235999999


Q ss_pred             chhhh
Q 043623          105 SKLLL  109 (359)
Q Consensus       105 ~~~l~  109 (359)
                      |+...
T Consensus        82 G~~~l   86 (117)
T 4esf_A           82 GRQEL   86 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88443

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=81.92  E-value=0.57  Score=36.58  Aligned_cols=48  Identities=17%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALE----FQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++.|+..|...+++.|..+|++.++    +   +...+.++|+-|...|+|.+..
T Consensus        11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~   62 (138)
T 2g9w_A           11 ERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR   62 (138)
T ss_dssp             HHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence            3445555654226899999999998    6   5789999999999999999885

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=81.89  E-value=0.28  Score=45.03  Aligned_cols=63  Identities=16%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcC
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKD  111 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~  111 (359)
                      -+..|+..|... +++|..+||+.+++   ++.-++|.|+.|...|++....         ....+|+.|+.+...
T Consensus        21 r~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~---------~gi~LT~~G~~~~~~   83 (345)
T 2o0m_A           21 ERFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK---------SGMTLTERGLEVYQG   83 (345)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe---------cceEEcHHHHHHHHH
Confidence            356677888764 78999999999999   6799999999999999998553         458899888866543

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=81.73  E-value=1.1  Score=34.28  Aligned_cols=55  Identities=11%  Similarity=0.166  Sum_probs=43.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      .-.|.+.+..  .|.++.+||+.+++   ++..++.||+.|...|.+..-.        .+.|.++..
T Consensus         9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~--------~~~~~~~~~   63 (121)
T 2pjp_A            9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV--------KDRYYRNDR   63 (121)
T ss_dssp             HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEHHH
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec--------CCceECHHH
Confidence            3345566643  57799999999999   6789999999999999888886        466766643

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=81.63  E-value=1.8  Score=39.28  Aligned_cols=121  Identities=10%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCceEEeCCCCC-C---CC--CccEEEecchhccCC
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---IP--SADAFLFKLIFHDYD  266 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~~--~~D~i~~~~vlh~~~  266 (359)
                      .+++|+=||.|.+...+.++.-+.+ +.++|. +.+++..+. .+...++.+|+.+ .   ++  .+|+++...-...++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            4799999999999999998754333 567887 444443322 2344566777765 2   23  489998765554442


Q ss_pred             ---------hhHHHHHHHHHH---HhcC-CCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          267 ---------DEVCLKLLKNCR---EAVA-SSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       267 ---------d~~~~~iL~~~~---~~L~-p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                               |+. -.++..+.   +.++ |     +++++|.+..-..                     +  .+.+.+.+
T Consensus        84 ~ag~~~~~~d~r-~~L~~~~~r~i~~~~~P-----~~~vlENV~gl~~---------------------~--~~~~~i~~  134 (333)
T 4h0n_A           84 RNGKYLDDNDPR-TNSFLYLIGILDQLDNV-----DYILMENVKGFEN---------------------S--TVRNLFID  134 (333)
T ss_dssp             ETTEECCTTCTT-SCCHHHHHHHGGGCTTC-----CEEEEEECTTGGG---------------------S--HHHHHHHH
T ss_pred             hhhhccCCcCcc-cccHHHHHHHHHHhcCC-----CEEEEecchhhhh---------------------h--hHHHHHHH
Confidence                     221 12333333   3444 6     6888887642110                     0  13567888


Q ss_pred             HHHhcCCceeeE
Q 043623          334 LFFDAGFTSYKI  345 (359)
Q Consensus       334 ll~~aGf~~~~~  345 (359)
                      .|++.||.+...
T Consensus       135 ~l~~~GY~v~~~  146 (333)
T 4h0n_A          135 KLKECNFIYQEF  146 (333)
T ss_dssp             HHHHTTEEEEEE
T ss_pred             HHHhCCCeEEEE
Confidence            899999987544

>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}

Probab=81.16  E-value=1.4  Score=33.01  Aligned_cols=49  Identities=8%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             HHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           32 LKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        32 l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |...+..|-+.  +  |..+ |..+||+.+|+   +..-+++-|+.|...|++....
T Consensus        18 i~~~I~~g~~~--~--G~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~   67 (113)
T 3tqn_A           18 IVEAIIDGSYV--E--GEMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR   67 (113)
T ss_dssp             HHHHHHHTSSC--T--TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHcCCCC--C--CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence            34444444443  1  3455 89999999999   6899999999999999999876

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*

Probab=80.54  E-value=1  Score=40.78  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=43.8

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      ..|++.|.+ ++++|.++||+++++   ++..++|-|+.|...|++.....       +..|++.+.
T Consensus         8 ~~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-------g~GY~l~~~   63 (321)
T 1bia_A            8 LKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-------GKGYSLPEP   63 (321)
T ss_dssp             HHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-------TTEEECSSC
T ss_pred             HHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-------CCCcEEeec
Confidence            345666654 478999999999999   68999999999999999865432       346888653

>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A

Probab=80.19  E-value=2.4  Score=32.69  Aligned_cols=50  Identities=16%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             HHHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           31 FLKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        31 ~l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|...+..|-+.  +  |..+ |..+||+.+|+   +..-+++-|+.|...|++....
T Consensus        12 ~i~~~I~~g~l~--~--G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~   62 (129)
T 2ek5_A           12 LIEDSIVDGTLS--I--DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR   62 (129)
T ss_dssp             HHHHHHHTTSSC--T--TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred             HHHHHHHhCCCC--C--CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence            344444455443  2  3556 89999999999   6889999999999999999886

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=80.15  E-value=1.5  Score=33.09  Aligned_cols=74  Identities=14%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhc--------CCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEe
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSAL--------EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYA  100 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~  100 (359)
                      +.++-..++=|+..|..  +|.+.-+|.+.+        ++   ++..+...|+.|...|+++..... .+.+ ..-.|+
T Consensus         7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~-~~~~~~rk~Y~   80 (116)
T 3f8b_A            7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGD-ESQGGRRKYYR   80 (116)
T ss_dssp             HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC-----CCEEEEE
T ss_pred             HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeec-cCCCCCceEEE
Confidence            34444455555666665  789999998887        45   688999999999999999976310 0001 113599


Q ss_pred             cCccchhhh
Q 043623          101 LTSASKLLL  109 (359)
Q Consensus       101 ~t~~~~~l~  109 (359)
                      +|+.|+...
T Consensus        81 LT~~G~~~l   89 (116)
T 3f8b_A           81 LTEIGHENM   89 (116)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            999988443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-80
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	6e-69
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	3e-57
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	1e-31
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	2e-30
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	8e-26
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	4e-25
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	1e-23
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	5e-16
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	1e-13
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	1e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  243 bits (621), Expect = 3e-80
 Identities = 109/244 (44%), Positives = 161/244 (65%), Gaps = 2/244 (0%)

Query: 115 CLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL 174
           CL+P V  V D       H L +W+   +    F    G   W + ++N E+N  FN  +
Sbjct: 2   CLAPMVECVLDPTLSGSYHELKKWIYEED-LTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60

Query: 175 ASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP 234
           ASDS++  L ++DC  +FDGL S+V+VGGGTG+ A+II E FP +KC V + P V+ +L 
Sbjct: 61  ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120

Query: 235 ETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294
            ++NL ++ GDM  SIP+ADA L K I H++ D+ CL++LK C+EAV +   R KV I+D
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180

Query: 295 IVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSF 354
           +V+++KKD+ ++T+ KLL D + M C+ G ER+E+EW++LF +AGF  YKI+PL G  S 
Sbjct: 181 MVIDKKKDENQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239

Query: 355 IEVY 358
           IE+Y
Sbjct: 240 IEIY 243

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  214 bits (546), Expect = 6e-69
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 116 LSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLA 175
           L+ F   +   A +         +   +  D F   HG+  + +  ++ + N +FN+ + 
Sbjct: 4   LASFTTFLCYPALLQVWMNFKEAVVDED-IDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62

Query: 176 SDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE 235
                    + +    F+G+S+LV+VGGG+G    +I   +P IK    +LP VI + P 
Sbjct: 63  DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122

Query: 236 TDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295
              ++ + GDM  S+P  DA + K + H++ DE C++ L NC +A++ +    KVIIV+ 
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG---KVIIVEF 179

Query: 296 VVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT-PLLGLRSF 354
           ++ E+ +  E ++     D LM   V G ER+EK++E+L   +GF+ +++          
Sbjct: 180 ILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239

Query: 355 IEVY 358
           +E Y
Sbjct: 240 MEFY 243

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  184 bits (467), Expect = 3e-57
 Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 115 CLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL 174
            +S   L+  D   +   ++L   +       PF   +G+  + Y   +  FN +FN+G+
Sbjct: 4   SISALNLMNQDKVLMESWYHLKDAVLDGG--IPFNKAYGMTAFEYHGTDPRFNKVFNKGM 61

Query: 175 ASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP 234
           +  S +    I +    F+GL SLV+VGGGTG+    I   +P+IK    +LPHVI D P
Sbjct: 62  SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP 121

Query: 235 ETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294
               ++ + GDM  SIP ADA   K I HD+ DE CLK LKNC EA+       KVI+ +
Sbjct: 122 SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL---PDNGKVIVAE 178

Query: 295 IVVNEKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKITPLLGLRS 353
            ++    D    T+  +  D +M+   P G ER++KE+E L   AGF  +K+        
Sbjct: 179 CILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238

Query: 354 FIE 356
            +E
Sbjct: 239 IME 241

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score =  117 bits (294), Expect = 1e-31
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 21/239 (8%)

Query: 133 HYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIF 192
             L   +R       +   +G   W     +    + F+  ++ D  +A     D    +
Sbjct: 23  TGLLDVVRTGR--PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-W 79

Query: 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV-------IADLPETDNLKFIAGD 245
             +  +++VGGG G     I+   P ++ +++EL           AD    D +    GD
Sbjct: 80  SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD 139

Query: 246 -MNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP 304
                  +AD  L   +  ++ DE  L +L+ C  A+       +++++D    E     
Sbjct: 140 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD 196

Query: 305 EITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLR-----SFIEVY 358
                  L D  M+T + G  R+  E   L   AG                  S +E  
Sbjct: 197 RFFST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  109 bits (274), Expect = 2e-30
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 6/103 (5%)

Query: 9   ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRN 68
            +E+F+AQA LYKH+ +++ S+ LK AVE+ IP+II   G+P++L  LVS L+   +K  
Sbjct: 3   PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIG 62

Query: 69  CLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKD 111
            +RR+MR L H+GFF          +E E+YALT AS+LL++ 
Sbjct: 63  NVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRG 99

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score =  102 bits (253), Expect = 8e-26
 Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 22/239 (9%)

Query: 133 HYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIF 192
             L   +R       + + +G   +       +    F+  LA D  +A        + +
Sbjct: 22  TRLPDAIRTGR--PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAA-YDW 78

Query: 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--------TDNLKFIAG 244
             +  +++VGGG G FA  I+   P +  +VLE+   +                      
Sbjct: 79  TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138

Query: 245 DMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP 304
                   ADA +   +  ++ D   +++L  C EA+       +++I +        + 
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDL---HEN 192

Query: 305 EITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLG-----LRSFIEVY 358
              E     D  M+  + G  R+ ++W+ L   AG    ++  L         S + + 
Sbjct: 193 SFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 251

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 95.7 bits (238), Expect = 4e-25
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 14  QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRP---VTLPELVSALEF---QPNKR 67
            A         + +    L  A++L + +II K   P   ++  E+ S L       +  
Sbjct: 5   SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLP 64

Query: 68  NCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDK 112
           N L R++RLL      ++T            Y L+   K L+ D+
Sbjct: 65  NRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 91.8 bits (228), Expect = 1e-23
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 15  AQAHLYKHVLSYMSSIF---LKCAVELGIPDIIHKRGRPVTLPELVSALEF---QPNKRN 68
            +A+L+   L+  +S+    LK A+EL + +II K G    +  +  A +     P+   
Sbjct: 5   EEANLFAMQLA-SASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPV 63

Query: 69  CLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDK 112
            L R++RLL      + +       +    Y L + +K L+K++
Sbjct: 64  MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 14  QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRI 73
           Q    L K++ + ++ + L+ A  L + D +       TL  L    +  P     L R+
Sbjct: 6   QDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHP---QALSRL 60

Query: 74  MRLLDHSGFFSTTKVHNSREEENEAYALTSASKLL 108
           +R L   G           E++      T    LL
Sbjct: 61  VRHLTVVGVLEG------GEKQGRPLRPTRLGMLL 89

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 25  SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFS 84
           S  + + ++ A  L + D I       T+  L +  + +P       R++R L   G   
Sbjct: 11  SLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEAL---LRLIRHLVAIGLL- 64

Query: 85  TTKVHNSREEENEAYALTSASKLLLKD 111
                   E+    +  T   +LL  D
Sbjct: 65  -------EEDAPGEFVPTEVGELLADD 84

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 21/195 (10%), Positives = 55/195 (28%), Gaps = 20/195 (10%)

Query: 170 FNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV 229
            +     D + ++  I        G S  ++ G G G   + +     +    +  + H+
Sbjct: 71  MDHVHDVDIEGSRNFIASLPG--HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHM 128

Query: 230 IADL----PETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSD 285
           + +           KFI   M  +    + +   +I            +K  +    +  
Sbjct: 129 LEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT 188

Query: 286 GREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI 345
               +   +      +   +  +               + RS+  ++RLF ++G    K 
Sbjct: 189 PNGYIFFKENCSTGDRFLVDKED-------------SSLTRSDIHYKRLFNESGVRVVKE 235

Query: 346 TPLLGL-RSFIEVYL 359
                       + +
Sbjct: 236 AFQEEWPTDLFPLKM 250

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 27/159 (16%), Positives = 44/159 (27%), Gaps = 21/159 (13%)

Query: 198 LVEVGGGTGSFARIISEAFPSI--------KCSVLELPHVIADLPETDNLKFIAGDMNQS 249
           ++++G G G  A   S                 V         +      +  A  +   
Sbjct: 20  VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79

Query: 250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEA 309
             S D    +   H + D    K ++     +   DGR   ++VD         PE    
Sbjct: 80  DDSFDIITCRYAAHHFSD--VRKAVREVARVLK-QDGR--FLLVDHY------APEDPVL 128

Query: 310 KLLYDALMMTCVPGIER--SEKEWERLFFDAGFTSYKIT 346
               + L     P   R  S  EW+ +F         I 
Sbjct: 129 DEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.85
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.81
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.78
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.77
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.77
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.76
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.73
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.69
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.67
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.65
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.64
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.63
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.62
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.59
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.58
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.56
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.53
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.5
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.49
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.49
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.48
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.47
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.47
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.44
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.44
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.43
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.42
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.41
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.33
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.31
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.31
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.31
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.3
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.27
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.27
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.26
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.21
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.2
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.1
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.09
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.09
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.05
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.03
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.03
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.97
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.87
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.87
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.85
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.8
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.79
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.71
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.49
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.47
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.37
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.35
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.34
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.33
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.29
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.17
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.16
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.16
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.15
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.12
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.09
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.09
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.07
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.06
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.01
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.01
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.0
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.0
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.99
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.94
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.81
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.75
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.75
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.75
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.72
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.71
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.48
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.41
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.39
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.3
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.28
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.22
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.94
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.48
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.39
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.38
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	96.28
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	96.27
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	95.71
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	95.69
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.48
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	95.38
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	95.27
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.16
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	95.06
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.98
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	94.96
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	94.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.65
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	94.64
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	94.44
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	94.42
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	94.25
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	94.16
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	94.13
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	94.03
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	94.02
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	93.99
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	93.99
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.98
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	93.96
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	93.71
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	93.52
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	93.26
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	93.14
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.84
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	92.54
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	92.42
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	92.4
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.34
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	92.33
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.28
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	92.21
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	92.14
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	92.01
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	92.01
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	91.61
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	91.48
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.45
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	91.18
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	91.05
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	90.99
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.78
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	90.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.4
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	90.35
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.12
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.02
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	89.91
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	89.84
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.83
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	89.81
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.7
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	89.64
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	89.44
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	89.2
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	88.74
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	88.65
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	88.52
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	88.44
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	88.43
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.16
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	87.88
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	87.55
d1zyba1	73	Probable transcription regulator BT4300, C-termina	87.43
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	87.37
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.22
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.13
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	87.08
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	86.8
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	86.26
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.93
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	85.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	85.76
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	85.71
d2p8ta1	69	Hypothetical protein PH0730 {Pyrococcus horikoshii	85.64
d3bwga1	78	Transcriptional regulator YydK {Bacillus subtilis	85.49
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	85.2
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.06
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.93
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	84.33
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	84.0
d1hw1a1	74	Fatty acid responsive transcription factor FadR, N	83.87
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.78
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	83.56
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.3
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	83.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.97
d1stza1	87	Heat-inducible transcription repressor HrcA, N-ter	82.76
d1s6la1	60	Alkylmercury lyase MerB {Escherichia coli [TaxId:	82.17
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	81.95
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	81.84
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	81.25
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.99
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	80.79
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.24

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=6.3e-45  Score=322.18  Aligned_cols=240  Identities=29%  Similarity=0.538  Sum_probs=206.6

Q ss_pred             ChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhcccccC
Q 043623          115 CLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFD  193 (359)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~  193 (359)
                      |+++++.+++.+.++++|.+|.++++ ++++++|+..+|.++|+|+.++|+..+.|+++|...+... +.+++.++ .++
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~-~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~   80 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVV-DEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFE   80 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHH-SCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTT
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHh-cCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc
Confidence            78999999988889999999999999 7887889999999999999999999999999999877766 88888887 367


Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHH
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKL  273 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~i  273 (359)
                      +..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|++|+|+++++||+|+|+++.++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~i  160 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEF  160 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHH
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHH
Confidence            88999999999999999999999999999999999999998899999999999999899999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec-CCcc
Q 043623          274 LKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL-LGLR  352 (359)
Q Consensus       274 L~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~  352 (359)
                      |++++++|+|   ||+|+|+|.+.++....+........+|+.|+..++|++||.+||.++|++|||+.++|++. .+..
T Consensus       161 L~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~  237 (244)
T d1fp1d2         161 LSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL  237 (244)
T ss_dssp             HHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTE
T ss_pred             HHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCE
Confidence            9999999999   99999999999887665433333456788888888999999999999999999999999866 5778


Q ss_pred             eEEEEEC
Q 043623          353 SFIEVYL  359 (359)
Q Consensus       353 ~~i~~~~  359 (359)
                      +|||++|
T Consensus       238 ~viE~~K  244 (244)
T d1fp1d2         238 GVMEFYK  244 (244)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999998

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.4e-43  Score=310.51  Aligned_cols=238  Identities=45%  Similarity=0.852  Sum_probs=212.4

Q ss_pred             ChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhcccccC
Q 043623          115 CLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFD  193 (359)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~  193 (359)
                      ++.+++.++.++.++.+|..|.++++ ++.+++|+..+|.++|+|+.++|+..+.|+++|...+... ..+.. +.+.++
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~-~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~   79 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIY-EEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFD   79 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHT-CSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHh-cCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hccccc
Confidence            57788888888888999999999999 7877899999999999999999999999999999887665 44433 222367


Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHH
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKL  273 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~i  273 (359)
                      +..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|++++.|++|+|+++++||+|+|++++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i  159 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI  159 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence            78899999999999999999999999999999999999999899999999999998889999999999999999999999


Q ss_pred             HHHHHHhcCCCCCC---ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCC
Q 043623          274 LKNCREAVASSDGR---EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLG  350 (359)
Q Consensus       274 L~~~~~~L~p~~~g---G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~  350 (359)
                      |++++++|+|   |   |+++|+|...++....+........+++.|+. .+|++||.+||+++|++|||+++++++.++
T Consensus       160 L~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~  235 (244)
T d1fp2a2         160 LKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTG  235 (244)
T ss_dssp             HHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred             HHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence            9999999999   7   89999999998876654333334567777764 689999999999999999999999999999


Q ss_pred             cceEEEEE
Q 043623          351 LRSFIEVY  358 (359)
Q Consensus       351 ~~~~i~~~  358 (359)
                      ..++||+|
T Consensus       236 ~~svIE~~  243 (244)
T d1fp2a2         236 FLSLIEIY  243 (244)
T ss_dssp             TEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99999997

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1e-41  Score=302.35  Aligned_cols=238  Identities=34%  Similarity=0.562  Sum_probs=215.4

Q ss_pred             CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhccccc
Q 043623          114 YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIF  192 (359)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~  192 (359)
                      .++++++.+..++.++..|.+|.+++| +|+ ++|+..+|.++|+|+.++|+..+.|+++|...+... +.++..+++ .
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avr-tG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~   79 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVL-DGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-F   79 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHH-HCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-T
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHh-hCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-c
Confidence            378999988888888999999999999 898 689999999999999999999999999999877666 788888872 4


Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHH
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLK  272 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~  272 (359)
                      ++..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|++++.++||+|+++++.+
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~  159 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK  159 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc-CCcccCHHHHHHHHHhcCCceeeEEecCCc
Q 043623          273 LLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV-PGIERSEKEWERLFFDAGFTSYKITPLLGL  351 (359)
Q Consensus       273 iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~  351 (359)
                      +|++++++|+|   ||+++|+|...++....+........+|+.|+..+ +|++||.+||+++|++|||+.+++++.++.
T Consensus       160 iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~  236 (243)
T d1kyza2         160 FLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFN  236 (243)
T ss_dssp             HHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETT
T ss_pred             HHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            99999999999   99999999998876655433334457888888764 899999999999999999999999999988


Q ss_pred             ceEEEE
Q 043623          352 RSFIEV  357 (359)
Q Consensus       352 ~~~i~~  357 (359)
                      .+|||.
T Consensus       237 ~~viE~  242 (243)
T d1kyza2         237 TYIMEF  242 (243)
T ss_dssp             EEEEEE
T ss_pred             CEEEEe
Confidence            999984

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=6.6e-39  Score=286.51  Aligned_cols=237  Identities=19%  Similarity=0.277  Sum_probs=200.9

Q ss_pred             CCChhHHHHHhcCccc-cchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhccc
Q 043623          113 PYCLSPFVLLVTDAAF-ITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKH  190 (359)
Q Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~  190 (359)
                      |.++++|+.+...... ..+|.+|.+++| +|+ ++|+..+|.++|+|++++|+....|+++|...+... +.+++.++ 
T Consensus         2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~r-tG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-   78 (256)
T d1qzza2           2 PAQQRAWLDLNGAVSHADLAFTGLLDVVR-TGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-   78 (256)
T ss_dssp             TTCHHHHHCTTSHHHHHHGGGGGHHHHHH-HSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-
T ss_pred             cHHHHHHHhhcCchhhhHhhHHHHHHHHH-hCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-
Confidence            5577777765522211 236999999999 888 578888999999999999999999999999887777 89999998 


Q ss_pred             ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCCCCC-CccEEEecchh
Q 043623          191 IFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQSIP-SADAFLFKLIF  262 (359)
Q Consensus       191 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~~~~-~~D~i~~~~vl  262 (359)
                       +++..+|||||||+|.++..+++++|+++++++|+|++++.+++       .+|++++.+|++++.| +||+|++.++|
T Consensus        79 -~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vL  157 (256)
T d1qzza2          79 -WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL  157 (256)
T ss_dssp             -CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCG
T ss_pred             -CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccc
Confidence             88899999999999999999999999999999999888776543       6899999999999776 59999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                      |+|+++++.++|++++++|||   ||+++|+|...++.....  +.....+|+.|+...+|+.||.++|.++|+++||++
T Consensus       158 h~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~  232 (256)
T d1qzza2         158 LNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL  232 (256)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred             cccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCccc--HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCce
Confidence            999999999999999999999   999999998766544332  133457899999888999999999999999999999


Q ss_pred             eeEEecCC-----cceEEEEE
Q 043623          343 YKITPLLG-----LRSFIEVY  358 (359)
Q Consensus       343 ~~~~~~~~-----~~~~i~~~  358 (359)
                      +++++.+.     ..+|+|++
T Consensus       233 ~~~~~~~~~~~~~~~~v~E~~  253 (256)
T d1qzza2         233 ASERTSGSTTLPFDFSILEFT  253 (256)
T ss_dssp             EEEEEECCSSCSSCEEEEEEE
T ss_pred             eEEEEeCCcCccCceEEEEEE
Confidence            99988643     46899875

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=9.4e-37  Score=272.35  Aligned_cols=211  Identities=20%  Similarity=0.363  Sum_probs=187.9

Q ss_pred             cchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchH
Q 043623          129 ITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGS  207 (359)
Q Consensus       129 ~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~  207 (359)
                      ..+|.+|++++| +|+ ++|...+|.++|+|+.++|+....|+++|....... +.+++.++  +.+..+|||||||+|.
T Consensus        18 ~~~~~~L~~~vr-~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~   93 (253)
T d1tw3a2          18 DISFTRLPDAIR-TGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGG   93 (253)
T ss_dssp             GGGGGGHHHHHH-HCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSH
T ss_pred             cccHHHHHHHHH-hCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCH
Confidence            457899999999 788 568888999999999999999999999999887777 89999999  8889999999999999


Q ss_pred             HHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCCCCC-CccEEEecchhccCChhHHHHHHHHHHH
Q 043623          208 FARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCRE  279 (359)
Q Consensus       208 ~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~  279 (359)
                      ++..+++++|+++++++|+|++++.+++       .+||+++.+|++++.| +||+|+++++||+|+++++.++|+++++
T Consensus        94 ~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~  173 (253)
T d1tw3a2          94 FAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAE  173 (253)
T ss_dssp             HHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHH
Confidence            9999999999999999999888776653       6899999999998655 5999999999999999999999999999


Q ss_pred             hcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623          280 AVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       280 ~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      +|||   ||+|+|.|....+.....   .....+++.|+...+|+.||.++|.++|+++||+++++..++
T Consensus       174 ~LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~  237 (253)
T d1tw3a2         174 ALEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLP  237 (253)
T ss_dssp             TEEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hcCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence            9999   999999998766554433   234567888888889999999999999999999999988763

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=8.8e-21  Score=165.00  Aligned_cols=164  Identities=10%  Similarity=0.066  Sum_probs=124.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEA--FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~  260 (359)
                      .+++.+|||||||+|..+..+++.  .|+.+++++|+ ++|++.|++       ..++++..+|+.+ +.+.+|++++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            467789999999999999999986  48999999999 889988763       5567888888887 666799999999


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-c-------------CCccc
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-V-------------PGIER  326 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~g~~~  326 (359)
                      ++|++++++..++|++++++|+|   ||.+++.|...++....... .......+..... .             .-..+
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTD  192 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred             eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence            99999988888999999999999   99999999887665322100 0001111101000 0             01235


Q ss_pred             CHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623          327 SEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL  359 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  359 (359)
                      +.+++.++|+++||+.++++........+.|+|
T Consensus       193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            889999999999999999875544455666665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=4.5e-20  Score=160.82  Aligned_cols=151  Identities=13%  Similarity=0.294  Sum_probs=117.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--  251 (359)
                      ..+++..+  ++++.+|||||||+|.++..+++..+  +++++|+ +++++.|++      .++++|+.+|+.+ +++  
T Consensus         5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~   80 (231)
T d1vl5a_           5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE   80 (231)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence            34555555  78889999999999999999998864  7999999 788877653      5889999999998 766  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh--hhhcCCcccCHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM--MTCVPGIERSEK  329 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~t~~  329 (359)
                      .||+|++.+++||++|.+  ++|++++++|+|   ||+++|.++..+....      ....++...  ......+.++.+
T Consensus        81 ~fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  149 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKS  149 (231)
T ss_dssp             CEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred             ccccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHH
Confidence            499999999999998864  779999999999   9999999987665421      111222111  111234567899


Q ss_pred             HHHHHHHhcCCceeeEEe
Q 043623          330 EWERLFFDAGFTSYKITP  347 (359)
Q Consensus       330 e~~~ll~~aGf~~~~~~~  347 (359)
                      +|.++|+++||+++++..
T Consensus       150 ~~~~~l~~aGf~~~~~~~  167 (231)
T d1vl5a_         150 DWLKMLEEAGFELEELHC  167 (231)
T ss_dssp             HHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHCCCEEEEEEE
Confidence            999999999999887654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.81  E-value=8.8e-20  Score=164.07  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=119.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-  251 (359)
                      ..+....+  ++++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++       .++|+++.+|+.+ +++ 
T Consensus        57 ~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~  133 (282)
T d2o57a1          57 SELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED  133 (282)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence            44444445  7888999999999999999999875 579999998 778877664       5799999999998 766 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE  330 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e  330 (359)
                       .||+|++..++||+++..  ++|++++++|||   ||++++.++...+.......   ....+..    ......+.++
T Consensus       134 ~sfD~V~~~~~l~h~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~s~~~  201 (282)
T d2o57a1         134 NSYDFIWSQDAFLHSPDKL--KVFQECARVLKP---RGVMAITDPMKEDGIDKSSI---QPILDRI----KLHDMGSLGL  201 (282)
T ss_dssp             TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEECTTCCGGGG---HHHHHHH----TCSSCCCHHH
T ss_pred             cccchhhccchhhhccCHH--HHHHHHHHhcCC---CcEEEEEEeecCCCCchhHH---HHHHHHh----ccCCCCCHHH
Confidence             399999999999998764  789999999999   99999999887765443211   1112111    1123458899


Q ss_pred             HHHHHHhcCCceeeEEec
Q 043623          331 WERLFFDAGFTSYKITPL  348 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~~  348 (359)
                      |.++++++||+.+.+...
T Consensus       202 ~~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         202 YRSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             HHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHcCCceEEEEEC
Confidence            999999999998888765

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.78  E-value=2.8e-19  Score=158.19  Aligned_cols=148  Identities=19%  Similarity=0.298  Sum_probs=117.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~  253 (359)
                      ..+++.++  ..+..+|||||||+|.++..++..+++ +++++|. +.+++.|++    .++++|+.+|+.+ +++  .|
T Consensus        83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            45566665  567789999999999999999887665 8999998 788887764    4668999999987 544  39


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER  333 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~  333 (359)
                      |+|++..++||+++++..++|++++++|+|   ||.++|.+.........         .+.    ..+...|+.++|++
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~  223 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKR  223 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHH
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHH
Confidence            999999999999999989999999999999   99999988765443211         010    12334579999999


Q ss_pred             HHHhcCCceeeEEec
Q 043623          334 LFFDAGFTSYKITPL  348 (359)
Q Consensus       334 ll~~aGf~~~~~~~~  348 (359)
                      +|+++||++++....
T Consensus       224 l~~~aGf~ii~~~~q  238 (254)
T d1xtpa_         224 LFNESGVRVVKEAFQ  238 (254)
T ss_dssp             HHHHHTCCEEEEEEC
T ss_pred             HHHHcCCEEEEEEee
Confidence            999999999887664

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=7e-19  Score=153.70  Aligned_cols=150  Identities=19%  Similarity=0.306  Sum_probs=117.2

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--S  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~  252 (359)
                      .+++..+  ++++.+|||||||+|.++..+++..+  +++++|+ +.+++.|++      .+++.++.+|+.+ +++  .
T Consensus         7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence            4566666  88999999999999999999999864  7999999 788887764      4789999999998 766  3


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh--hhhcCCcccCHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM--MTCVPGIERSEKE  330 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~t~~e  330 (359)
                      ||+|++.+++|+++|.  .++|++++++|||   ||++++.+...+....      ...+++...  ......+.++..+
T Consensus        83 fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
T d1xxla_          83 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSE  151 (234)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred             cceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEEEcCCCCCHH------HHHHHHHHHhhCCCcccccCCHHH
Confidence            9999999999999885  4789999999999   9999998886554321      111222111  1113456678999


Q ss_pred             HHHHHHhcCCceeeEEe
Q 043623          331 WERLFFDAGFTSYKITP  347 (359)
Q Consensus       331 ~~~ll~~aGf~~~~~~~  347 (359)
                      |..+++++||.+..+..
T Consensus       152 ~~~~~~~~gf~~~~~~~  168 (234)
T d1xxla_         152 WQAMFSANQLAYQDIQK  168 (234)
T ss_dssp             HHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHCCCceeEEEE
Confidence            99999999998766544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.2e-18  Score=153.16  Aligned_cols=151  Identities=10%  Similarity=0.051  Sum_probs=117.7

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--S  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~  252 (359)
                      .+.+.+.  +.++.+|||||||+|.++..++++++ ++++++|+ +.+++.+++       .+||+|+.+|+.+..+  .
T Consensus        24 ~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          24 TLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            4556665  78899999999999999999998865 79999999 788876653       5789999999998433  4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE  332 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~  332 (359)
                      ||+|++..++||++|.+  ++|+++++.|||   ||++++.++.........   ..   .... .........+..++.
T Consensus       101 fD~v~~~~~~~~~~d~~--~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~---~~---~~~~-~~~~~~~~~~~~~~~  168 (245)
T d1nkva_         101 CDVAACVGATWIAGGFA--GAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EI---AQAC-GVSSTSDFLTLPGLV  168 (245)
T ss_dssp             EEEEEEESCGGGTSSSH--HHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HH---HHTT-TCSCGGGSCCHHHHH
T ss_pred             eeEEEEEehhhccCCHH--HHHHHHHHHcCc---CcEEEEEeccccCCCChH---HH---HHHh-ccCCCcccCCHHHHH
Confidence            99999999999998864  789999999999   999999998876654432   11   1110 011123456899999


Q ss_pred             HHHHhcCCceeeEEec
Q 043623          333 RLFFDAGFTSYKITPL  348 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~  348 (359)
                      .+++++||.++.....
T Consensus       169 ~~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         169 GAFDDLGYDVVEMVLA  184 (245)
T ss_dssp             HHHHTTTBCCCEEEEC
T ss_pred             HHHHHcCCEEEEEEeC
Confidence            9999999998876544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.5e-19  Score=154.40  Aligned_cols=140  Identities=12%  Similarity=0.218  Sum_probs=114.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.|++      ..+++|+++|+.+ +.+  .||+|++..+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            345689999999999999999877664 8999999 888887764      3567999999988 544  4999999999


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      +||+++++..++|+++++.|+|   ||.+++.+....+.....              .......++.++|.++|+++||+
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~aGf~  199 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVILD--------------DVDSSVCRDLDVVRRIICSAGLS  199 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEEE--------------TTTTEEEEBHHHHHHHHHHTTCC
T ss_pred             cccchhhhhhhHHHHHHHhcCC---cceEEEEEcccccccccc--------------cCCceeeCCHHHHHHHHHHcCCE
Confidence            9999999888999999999999   999999988765532110              01223446899999999999999


Q ss_pred             eeeEEecC
Q 043623          342 SYKITPLL  349 (359)
Q Consensus       342 ~~~~~~~~  349 (359)
                      +++.....
T Consensus       200 ii~~~~q~  207 (222)
T d2ex4a1         200 LLAEERQE  207 (222)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99887653

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.76  E-value=2.6e-19  Score=134.02  Aligned_cols=98  Identities=47%  Similarity=0.806  Sum_probs=87.6

Q ss_pred             hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623            9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV   88 (359)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~   88 (359)
                      +.+..+++..++++++||+.+++|++|++|||||.|..+++|+|++|||++++++|.+++.+.|+||+|++.|+|.++..
T Consensus         3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~   82 (101)
T d1fp2a1           3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK   82 (101)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC
Confidence            67888999999999999999999999999999999976668999999999999976566789999999999999987642


Q ss_pred             cCCCCCCCceEecCccchhhhcCC
Q 043623           89 HNSREEENEAYALTSASKLLLKDK  112 (359)
Q Consensus        89 ~~~~~~~~~~~~~t~~~~~l~~~~  112 (359)
                            ++++|.+|+.|++|++++
T Consensus        83 ------~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          83 ------EEESYALTVASELLVRGS  100 (101)
T ss_dssp             ------SSEEEEECHHHHTTSTTS
T ss_pred             ------CCCeEecCHHHHHhhcCC
Confidence                  147899999999998775

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=9.4e-18  Score=143.62  Aligned_cols=137  Identities=18%  Similarity=0.116  Sum_probs=103.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE  268 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~  268 (359)
                      .+..+|||||||+|.++..+.      +++++|+ +.+++.+++ .++.++.+|+.+ +++  .||+|++.++|||+++.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~  107 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP  107 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence            345689999999999988773      4689999 888888774 479999999988 665  49999999999999875


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh-hhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL-MMTCVPGIERSEKEWERLFFDAGFTSYKITP  347 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  347 (359)
                        .++|++++++|+|   ||++++.++.....     . ......... .....+...++.++|.++|+++||+++++..
T Consensus       108 --~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         108 --ERALKEAYRILKK---GGYLIVGIVDRESF-----L-GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             --HHHHHHHHHHEEE---EEEEEEEEECSSSH-----H-HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             --ccchhhhhhcCCC---CceEEEEecCCcch-----h-HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence              4789999999999   99999988754221     0 000011111 0111234567999999999999999888765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.6e-16  Score=141.90  Aligned_cols=162  Identities=15%  Similarity=0.155  Sum_probs=121.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~  253 (359)
                      ..+++.+.  ++++.+|||||||.|.++..++++++ ++++++|+ ++.++.+++       ..++.+...|..+....|
T Consensus        42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f  118 (280)
T d2fk8a1          42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  118 (280)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence            56777776  88999999999999999999988765 69999999 666665542       567788888876543469


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCc----hHH-HHHHHhhh-hhhhhcCCcccC
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP----EIT-EAKLLYDA-LMMTCVPGIERS  327 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~----~~~-~~~~~~~~-~~~~~~~g~~~t  327 (359)
                      |.|++..+++|++++....+|++++++|||   ||+++|...+..+.....    ... ......++ .....+||..++
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS  195 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS  195 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence            999999999999988777899999999999   999999876544321100    000 00011121 122346888899


Q ss_pred             HHHHHHHHHhcCCceeeEEecC
Q 043623          328 EKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      .+++.+.++++||.+..+..++
T Consensus       196 ~~~l~~~~e~aGf~v~~~~~~~  217 (280)
T d2fk8a1         196 TEMMVEHGEKAGFTVPEPLSLR  217 (280)
T ss_dssp             HHHHHHHHHHTTCBCCCCEECH
T ss_pred             hHhhhhhHHhhccccceeeecc
Confidence            9999999999999999887753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=7.2e-16  Score=137.64  Aligned_cols=162  Identities=14%  Similarity=0.107  Sum_probs=122.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~~~~~~  253 (359)
                      ..+++++.  +.++.+|||||||.|.++..+++.+ +++++++++ ++.++.++       ..+++++..+|+.+.-..|
T Consensus        52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            56677776  8899999999999999999999998 589999999 55554433       2789999999987632359


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC-----CCchHHHHHHHhh-hhhhhhcCCcccC
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK-----DKPEITEAKLLYD-ALMMTCVPGIERS  327 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~g~~~t  327 (359)
                      |.|++...+.|+....-..++++++++|+|   ||+++|.........     ..+.........+ +.....+||..++
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs  205 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS  205 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence            999999999998766566899999999999   999999887643321     1110001111111 1222346888899


Q ss_pred             HHHHHHHHHhcCCceeeEEecC
Q 043623          328 EKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       328 ~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      ..++..+++++||++.++..++
T Consensus       206 l~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         206 IPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHHHHHTTTCEEEEEEECH
T ss_pred             hhhHHHHHHHhchhhcccccch
Confidence            9999999999999999987764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.67  E-value=8.1e-17  Score=144.31  Aligned_cols=152  Identities=14%  Similarity=0.177  Sum_probs=108.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vl  262 (359)
                      +.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++     ..+++|+.+|+.+ +++ .||+|++.+++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL  104 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence            567899999999999999999998874 78999999 788887764     4478999999988 655 49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC-----chHHHH---HHHhhhh-hhhhcCCcc-cCHHHHH
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK-----PEITEA---KLLYDAL-MMTCVPGIE-RSEKEWE  332 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~-----~~~~~~---~~~~~~~-~~~~~~g~~-~t~~e~~  332 (359)
                      ||++++.  ++|+++++.|||   ||++++.++........     ......   ....... ......+.. .-..++.
T Consensus       105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  179 (281)
T d2gh1a1         105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP  179 (281)
T ss_dssp             GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHH
T ss_pred             hcCCCHH--HHHHHHHHHcCc---CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9999865  689999999999   99999998642211000     000000   0011111 111112222 2235678


Q ss_pred             HHHHhcCCceeeEEec
Q 043623          333 RLFFDAGFTSYKITPL  348 (359)
Q Consensus       333 ~ll~~aGf~~~~~~~~  348 (359)
                      .+|+++||+.+++.-.
T Consensus       180 ~~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         180 IYLSELGVKNIECRVS  195 (281)
T ss_dssp             HHHHHTTCEEEEEEEC
T ss_pred             HHHHHcCCeEEEEEEe
Confidence            8999999999887543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=9.7e-16  Score=137.19  Aligned_cols=161  Identities=13%  Similarity=0.133  Sum_probs=121.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCCCCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQSIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~~~~~~  253 (359)
                      ..+++...  ++++.+|||||||.|.++..++++++ ++++++++ ++.++.++       ..+++++...|+..+-..|
T Consensus        51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f  127 (291)
T d1kpia_          51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  127 (291)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence            56777777  88999999999999999999999886 69999999 55554443       2678899888876543469


Q ss_pred             cEEEecchhccCChh-------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC------chHHHHHHHhhh-hhhh
Q 043623          254 DAFLFKLIFHDYDDE-------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK------PEITEAKLLYDA-LMMT  319 (359)
Q Consensus       254 D~i~~~~vlh~~~d~-------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~------~~~~~~~~~~~~-~~~~  319 (359)
                      |.|++..++.|+++.       .-..++++++++|||   ||++++...+.++....      .+. ......++ ....
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~-~~~~~~~fi~kyi  203 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPM-SLLRFIKFILTEI  203 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCH-HHHHHHHHHHHHT
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCch-hhcccchHHHHHh
Confidence            999999999888762       346899999999999   99999988876553211      000 00111111 1223


Q ss_pred             hcCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623          320 CVPGIERSEKEWERLFFDAGFTSYKITPLL  349 (359)
Q Consensus       320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~  349 (359)
                      .+||...+..++..+++++||++..+..++
T Consensus       204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         204 FPGGRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             cCCCCCCCHHHHHhhhcccccccceeeecc
Confidence            468899999999999999999999888764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=1.4e-16  Score=137.43  Aligned_cols=100  Identities=17%  Similarity=0.314  Sum_probs=86.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      +++..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++     ..++.++.+|+.+ +++  .||+|++.+++
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence            356789999999999999999985  568999999 788887764     5678899999998 665  49999999999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ||+++++..++|+++.++|||   ||+++|..+.
T Consensus       113 ~~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~  143 (226)
T d1ve3a1         113 VHFEPLELNQVFKEVRRVLKP---SGKFIMYFTD  143 (226)
T ss_dssp             GGCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             hhCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence            999988888999999999999   9999887654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.64  E-value=5.5e-16  Score=134.20  Aligned_cols=139  Identities=20%  Similarity=0.242  Sum_probs=104.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCC-CccEEEecchhccCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYD  266 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~  266 (359)
                      ..++.+|||||||+|.++..+++..  .+++++|+ +++++.++.  .+++.++.+|+.+ +.+ .||+|++.++|||++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence            3456799999999999999998875  47999999 788888764  5689999999887 444 499999999999998


Q ss_pred             hhHHHHHHHHHH-HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-------------hhcCCcccCHHHHH
Q 043623          267 DEVCLKLLKNCR-EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-------------TCVPGIERSEKEWE  332 (359)
Q Consensus       267 d~~~~~iL~~~~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~t~~e~~  332 (359)
                      ++.  ++|++++ ++|+|   ||.++|.-+.....     .    ......+.             .....+.++.++++
T Consensus        96 d~~--~~l~~i~~~~Lk~---gG~l~i~~pn~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~  161 (225)
T d2p7ia1          96 DPV--ALLKRINDDWLAE---GGRLFLVCPNANAV-----S----RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE  161 (225)
T ss_dssp             SHH--HHHHHHHHTTEEE---EEEEEEEEECTTCH-----H----HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred             CHH--HHHHHHHHHhcCC---CceEEEEeCCcccH-----H----HHHHHHhhhhhhhhhcCccccceeeeeccCHHHHH
Confidence            864  6799998 68999   89888865532110     0    00111100             01123457899999


Q ss_pred             HHHHhcCCceeeEE
Q 043623          333 RLFFDAGFTSYKIT  346 (359)
Q Consensus       333 ~ll~~aGf~~~~~~  346 (359)
                      ++++++||++++..
T Consensus       162 ~~l~~~Gf~i~~~~  175 (225)
T d2p7ia1         162 RDASRAGLQVTYRS  175 (225)
T ss_dssp             HHHHHTTCEEEEEE
T ss_pred             HHHHHCCCEEEEEE
Confidence            99999999988754

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=1.2e-15  Score=132.02  Aligned_cols=142  Identities=15%  Similarity=0.133  Sum_probs=110.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCCC--CC--CccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQS--IP--SADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~~--~~--~~D~i~~~~vl  262 (359)
                      +.++.+|||+|||+|..+..+++..|+.+++++|+ |.+++.++    ..+++.++.+|...+  +.  .+|++++.+.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            67889999999999999999999999999999999 77776544    478888899988873  22  37887888888


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                      |++.+.  ..+++++++.|||   ||.++|.+.........++    .               ...+++.+.|+++||++
T Consensus       152 ~~~~~~--~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~~----~---------------~~~~e~~~~L~~aGF~i  207 (230)
T d1g8sa_         152 AQPNQA--EILIKNAKWFLKK---GGYGMIAIKARSIDVTKDP----K---------------EIFKEQKEILEAGGFKI  207 (230)
T ss_dssp             CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSCH----H---------------HHHHHHHHHHHHHTEEE
T ss_pred             cchHHH--HHHHHHHHHhccc---CceEEEEeeccccCCCCCH----H---------------HHHHHHHHHHHHcCCEE
Confidence            777654  5679999999999   9999998876655443321    0               12467899999999999


Q ss_pred             eeEEecCCc---ceEEEE
Q 043623          343 YKITPLLGL---RSFIEV  357 (359)
Q Consensus       343 ~~~~~~~~~---~~~i~~  357 (359)
                      ++...+.++   +.++++
T Consensus       208 ve~idL~py~~~H~~vvg  225 (230)
T d1g8sa_         208 VDEVDIEPFEKDHVMFVG  225 (230)
T ss_dssp             EEEEECTTTSTTEEEEEE
T ss_pred             EEEecCCCCcCCeEEEEE
Confidence            999988543   444443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=1.2e-15  Score=129.37  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=89.0

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-Cc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-SA  253 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~~  253 (359)
                      .++....  ...+.+|||||||+|..+..++++.  .+++++|+ +.+++.+++      .+++++...|+.+ +.+ .|
T Consensus        21 ~~~~~~~--~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f   96 (198)
T d2i6ga1          21 DVLAAAK--VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY   96 (198)
T ss_dssp             HHHHHHT--TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred             HHHHHcc--cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence            4444443  3445799999999999999999984  58999999 778876653      4779999999988 444 49


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|++..++|++++++..++|++++++|+|   ||.+++.....
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~  137 (198)
T d2i6ga1          97 DFILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMD  137 (198)
T ss_dssp             EEEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC
T ss_pred             cEEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence            999999999999988888999999999999   89888876653

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.60  E-value=6.6e-16  Score=111.97  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=73.8

Q ss_pred             HHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceE
Q 043623           20 YKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAY   99 (359)
Q Consensus        20 ~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~   99 (359)
                      +....+++.+.+|++|+++||||+|..  +|+|++|||+++|+   ++..+.|+||+|++.|+|++++        ++.|
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~---~~~~l~rlLr~l~a~gl~~e~~--------~~~y   72 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA--------PGEF   72 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE--------TTEE
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCc---ChhHHHHHHHHHHHCCCeEecC--------CCeE
Confidence            455688999999999999999999985  89999999999999   6899999999999999999887        6899


Q ss_pred             ecCccchhhhcCC
Q 043623          100 ALTSASKLLLKDK  112 (359)
Q Consensus       100 ~~t~~~~~l~~~~  112 (359)
                      .+|+.|+.|.+|+
T Consensus        73 ~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          73 VPTEVGELLADDH   85 (85)
T ss_dssp             EECTTGGGGSTTS
T ss_pred             ecCHHHHHhhcCC
Confidence            9999999998874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.59  E-value=3.4e-15  Score=130.85  Aligned_cols=95  Identities=13%  Similarity=0.171  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEec-chhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFK-LIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~-~vlh  263 (359)
                      .++.+|||||||+|.++..+++...  +++|+|+ +++++.|++     ..+++++.+|+.+ +.+ .||+|++. ++++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            4468999999999999999999854  7999999 888888764     5689999999987 544 49998865 6776


Q ss_pred             cC-ChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          264 DY-DDEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       264 ~~-~d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      ++ +.++..++|+++++.|+|   ||.+++
T Consensus       114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~  140 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF  140 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence            65 566778899999999999   887765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=2.8e-15  Score=131.59  Aligned_cols=105  Identities=19%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCCC-c
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIPS-A  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~~-~  253 (359)
                      ..+++...  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.|++     ..+++++.+|+.+ ++++ |
T Consensus        31 ~~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          31 EEIFKEDA--KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHTC--SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHhc--CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence            34455544  5667899999999999999999974  58999999 789988775     4589999999998 6664 9


Q ss_pred             cEEEec-chhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          254 DAFLFK-LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       254 D~i~~~-~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      |+|++. +++|+++.++..++|+++++.|+|   ||.+++.
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~  144 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence            999986 688888878888999999999999   8888764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.56  E-value=9.9e-15  Score=122.92  Aligned_cols=109  Identities=7%  Similarity=0.045  Sum_probs=90.2

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCceEEeC
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------------------TDNLKFIAG  244 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------------------~~rv~~~~~  244 (359)
                      ++..+.  ++++.+|||||||+|..+..|+++  +.+++++|+ +.+++.+++                  ...+++..+
T Consensus        12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_          12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             HHHHHC--CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHcC--CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence            344444  678899999999999999999997  679999999 788877653                  355688889


Q ss_pred             CCCCCCC----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          245 DMNQSIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       245 d~~~~~~----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      |+++..+    .||+|++..++|+++++....+++++.+.|||   ||++++.......
T Consensus        88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~  143 (201)
T d1pjza_          88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ  143 (201)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred             cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence            9888322    49999999999999998888999999999999   8998887665443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=6.9e-15  Score=128.30  Aligned_cols=97  Identities=13%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEe-cchhccCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLF-KLIFHDYD  266 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~-~~vlh~~~  266 (359)
                      .+++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++.....++.+|+.+ +++  .||+|++ ..++||++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~  117 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  117 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence            456789999999999999999886  569999999 8899988764444577889888 665  3999987 47899998


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          267 DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      |.+  ++|+++++.|+|   ||.+++..+
T Consensus       118 d~~--~~l~~i~r~Lk~---gG~~ii~~~  141 (246)
T d2avna1         118 NKD--KAFSEIRRVLVP---DGLLIATVD  141 (246)
T ss_dssp             CHH--HHHHHHHHHEEE---EEEEEEEEE
T ss_pred             hHH--HHHHHHHhhcCc---CcEEEEEEC
Confidence            865  689999999999   888887654

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.50  E-value=1e-14  Score=106.83  Aligned_cols=86  Identities=21%  Similarity=0.241  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      .....+++++.|++.+++|++|++||||++|.+  +|.|++|||+++|+   +++.+.|+|++|++.|+|++++.     
T Consensus         6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~---~~~~l~rLlr~L~a~gll~~~~d-----   75 (92)
T d1qzza1           6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGEK-----   75 (92)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCCC-----
T ss_pred             hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCc---CchHHHHHHHHHHHCCCeeeecC-----
Confidence            456788999999999999999999999999986  89999999999999   68999999999999999998862     


Q ss_pred             CCCceEecCccchhhhc
Q 043623           94 EENEAYALTSASKLLLK  110 (359)
Q Consensus        94 ~~~~~~~~t~~~~~l~~  110 (359)
                       +.+.|++|+.|+.|++
T Consensus        76 -~~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          76 -QGRPLRPTRLGMLLAD   91 (92)
T ss_dssp             --CCCCEECTTGGGGST
T ss_pred             -CCceecccHHHHhccC
Confidence             1357888999888764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.9e-14  Score=121.10  Aligned_cols=131  Identities=9%  Similarity=-0.017  Sum_probs=102.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCceEEeCCCC
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------------------TDNLKFIAGDMN  247 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------------------~~rv~~~~~d~~  247 (359)
                      .+++.+|||+|||+|..+..|++.  +.+++++|+ +.+++.+++                       ..++++..+|++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            457789999999999999999996  668999999 778765321                       468999999998


Q ss_pred             C--CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623          248 Q--SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG  323 (359)
Q Consensus       248 ~--~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (359)
                      +  +.+  .||+|+...++|++++++...+++++.++|+|   ||++++.....+......                 .-
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~g-----------------pp  180 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHPG-----------------PP  180 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCCC-----------------SS
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCCC-----------------CC
Confidence            7  222  49999999999999998899999999999999   998888776654322110                 00


Q ss_pred             cccCHHHHHHHHHhcCCceeeE
Q 043623          324 IERSEKEWERLFFDAGFTSYKI  345 (359)
Q Consensus       324 ~~~t~~e~~~ll~~aGf~~~~~  345 (359)
                      ...+.+++.++|+. +|.+..+
T Consensus       181 ~~~~~~el~~lf~~-~~~i~~l  201 (229)
T d2bzga1         181 FYVPHAEIERLFGK-ICNIRCL  201 (229)
T ss_dssp             CCCCHHHHHHHHTT-TEEEEEE
T ss_pred             CCCCHHHHHHHhcC-CCEEEEE
Confidence            12378999999965 6765443

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.49  E-value=2.3e-14  Score=107.22  Aligned_cols=100  Identities=23%  Similarity=0.306  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCC---CCHHHHHhhcCCCCCC---cchHHHHHHHHhccCceee
Q 043623           12 LFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRP---VTLPELVSALEFQPNK---RNCLRRIMRLLDHSGFFST   85 (359)
Q Consensus        12 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~---~t~~~LA~~~~~~~~~---~~~l~~~L~~L~~~g~l~~   85 (359)
                      ..++....++++.+++..++|++|++|||+|+|..+|+|   +|.+|||.++.+++.+   +..|.|+||.|++.|+|..
T Consensus         3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~   82 (110)
T d1fp1d1           3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS   82 (110)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcccc
Confidence            355677789999999999999999999999999887644   7999999998863323   3469999999999999986


Q ss_pred             ccccCCCCC-CCceEecCccchhhhcCC
Q 043623           86 TKVHNSREE-ENEAYALTSASKLLLKDK  112 (359)
Q Consensus        86 ~~~~~~~~~-~~~~~~~t~~~~~l~~~~  112 (359)
                      ..... +++ ....|.+||.+++|++++
T Consensus        83 ~~~~~-~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          83 TTRTI-EDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEEEC-TTSCEEEEEEECTTGGGGSTTC
T ss_pred             ccccC-CCCCeeeEEecchhhHhhcCCC
Confidence            63211 111 234699999999999875

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.48  E-value=2.3e-14  Score=106.93  Aligned_cols=98  Identities=24%  Similarity=0.368  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCC--CCCCHHHHHhhcCCC-CCCcchHHHHHHHHhccCceeeccccC
Q 043623           14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRG--RPVTLPELVSALEFQ-PNKRNCLRRIMRLLDHSGFFSTTKVHN   90 (359)
Q Consensus        14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~--~~~t~~~LA~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~~~~   90 (359)
                      ++....++++.+++..++|++|++|||||+|..+|  .+.|..|||.+++.+ |..+..++|+||.|++.|+|...... 
T Consensus         6 e~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~-   84 (107)
T d1kyza1           6 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRT-   84 (107)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeec-
Confidence            34446678899999999999999999999998765  467999999999884 43355799999999999999876321 


Q ss_pred             CCCC-CCceEecCccchhhhcCC
Q 043623           91 SREE-ENEAYALTSASKLLLKDK  112 (359)
Q Consensus        91 ~~~~-~~~~~~~t~~~~~l~~~~  112 (359)
                      .++| ....|.+||.|++|++|+
T Consensus        85 ~~dg~~~~~Y~LTpvsk~Lv~de  107 (107)
T d1kyza1          85 QQDGKVQRLYGLATVAKYLVKNE  107 (107)
T ss_dssp             CTTSCEEEEEEECHHHHHHSCCT
T ss_pred             CCCCCeeeEEecchhHHhhcCCC
Confidence            1112 234799999999999764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.47  E-value=4e-14  Score=124.44  Aligned_cols=106  Identities=16%  Similarity=0.059  Sum_probs=84.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC--
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI--  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~--  250 (359)
                      ..+++.+   .+++.+|||||||+|..+..+++..+ .+++|+|+ +.+++.|++       ..++.+..+|+.. +.  
T Consensus        15 ~~lI~~~---~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~   90 (252)
T d1ri5a_          15 ACLIRLY---TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL   90 (252)
T ss_dssp             HHHHHHH---CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC
T ss_pred             HHHHHHh---CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc
Confidence            3455554   35778999999999999999988754 37999999 788877653       4579999999976 43  


Q ss_pred             C-CccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          251 P-SADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       251 ~-~~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      . .||+|++..++|++  +.+...++|+++++.|+|   ||.+++.-
T Consensus        91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~  134 (252)
T d1ri5a_          91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTV  134 (252)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEe
Confidence            2 49999999999986  345677899999999999   89887753

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=2.2e-13  Score=115.93  Aligned_cols=142  Identities=14%  Similarity=0.116  Sum_probs=100.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--CccEE-Eecchh
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SADAF-LFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~D~i-~~~~vl  262 (359)
                      ++++.+|||||||+|..+..+++..|+.+++++|+ |.+++.+++    .+++.++.+|... +.+  .+|.+ ++.+.+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~  133 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  133 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence            78899999999999999999999999889999999 888887654    6899999999887 222  23222 223345


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS  342 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~  342 (359)
                      +++.+  ...+++++++.|||   ||+++|...........++.   . .               .++..+.+ ++||++
T Consensus       134 ~~~~~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~~~---~-~---------------~~~~~~~l-~~gf~i  188 (209)
T d1nt2a_         134 AQKNQ--IEILKANAEFFLKE---KGEVVIMVKARSIDSTAEPE---E-V---------------FKSVLKEM-EGDFKI  188 (209)
T ss_dssp             CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSCHH---H-H---------------HHHHHHHH-HTTSEE
T ss_pred             cChhh--HHHHHHHHHHHhcc---CCeEEEEEEccccCCCCCHH---H-H---------------HHHHHHHH-HcCCEE
Confidence            55544  35789999999999   99999887543333222110   0 1               12222333 379999


Q ss_pred             eeEEecCC---cceEEEEE
Q 043623          343 YKITPLLG---LRSFIEVY  358 (359)
Q Consensus       343 ~~~~~~~~---~~~~i~~~  358 (359)
                      .+...+.+   .+.+|.+|
T Consensus       189 ~E~i~L~P~~~~H~~v~~~  207 (209)
T d1nt2a_         189 VKHGSLMPYHRDHIFIHAY  207 (209)
T ss_dssp             EEEEECTTTCTTEEEEEEE
T ss_pred             EEEEccCCCccCcEEEEEE
Confidence            99988854   35577665

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5e-13  Score=119.04  Aligned_cols=139  Identities=17%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHH----HCCCC--eEEEeec-hHHHhcCCC-------CCCceE--EeCCCC-------CCC
Q 043623          194 GLSSLVEVGGGTGSFARIISE----AFPSI--KCSVLEL-PHVIADLPE-------TDNLKF--IAGDMN-------QSI  250 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~i~~a~~-------~~rv~~--~~~d~~-------~~~  250 (359)
                      +..+|||||||+|.++..+++    .+|+.  +++++|. +.+++.+++       ..++.+  ...++.       .+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            345899999999999877755    45554  5799998 677776542       233443  333332       122


Q ss_pred             --CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh-hh-hhcCCccc
Q 043623          251 --PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL-MM-TCVPGIER  326 (359)
Q Consensus       251 --~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~~~  326 (359)
                        ..||+|++.++||+++|..  ++|+++++.|+|   ||.++|.......   .  .  ......+. .. .......+
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~Lkp---gG~l~i~~~~~~~---~--~--~~l~~~~~~~~~~~~~~~~~  187 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSGSS---G--W--DKLWKKYGSRFPQDDLCQYI  187 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECTTS---H--H--HHHHHHHGGGSCCCTTSCCC
T ss_pred             CCCceeEEEEccceecCCCHH--HHHHHHHhhCCC---CCEEEEEEecCcc---h--H--HHHHHHHHHhcCCCcccccC
Confidence              2499999999999998864  789999999999   8988887653211   1  1  11111111 11 11234567


Q ss_pred             CHHHHHHHHHhcCCceee
Q 043623          327 SEKEWERLFFDAGFTSYK  344 (359)
Q Consensus       327 t~~e~~~ll~~aGf~~~~  344 (359)
                      +.++|.++|++.||+...
T Consensus       188 ~~~~~~~~L~~~G~~~~~  205 (280)
T d1jqea_         188 TSDDLTQMLDNLGLKYEC  205 (280)
T ss_dssp             CHHHHHHHHHHHTCCEEE
T ss_pred             CHHHHHHHHHHCCCceEE
Confidence            899999999999998543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=2.7e-13  Score=114.20  Aligned_cols=104  Identities=12%  Similarity=0.299  Sum_probs=83.3

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCCCC-
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQSIP-  251 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~~~-  251 (359)
                      ..+++.++  ..++.+|||||||+|.++..+++..|  +++++|+ +.+++.+++        ..+++++.+|++++.+ 
T Consensus        42 ~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~  117 (194)
T d1dusa_          42 KILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhcc
Confidence            34566666  66789999999999999999999876  6888898 777776653        4579999999988544 


Q ss_pred             -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                       .||+|++..++|+. .+...++++++.+.|+|   ||.+++.
T Consensus       118 ~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~  156 (194)
T d1dusa_         118 RKYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVV  156 (194)
T ss_dssp             SCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEE
Confidence             49999998887654 44456899999999999   8988764

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-14  Score=126.39  Aligned_cols=140  Identities=12%  Similarity=0.046  Sum_probs=94.9

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCc--------------------------
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNL--------------------------  239 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv--------------------------  239 (359)
                      ..++.+|||||||+|.++..++.... .+++++|+ +.+++.+++     ...+                          
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            34567999999999998877766532 37999999 778876653     1110                          


Q ss_pred             ----e-EEeC----CCCC-CCC--CccEEEecchhccCCh--hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch
Q 043623          240 ----K-FIAG----DMNQ-SIP--SADAFLFKLIFHDYDD--EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE  305 (359)
Q Consensus       240 ----~-~~~~----d~~~-~~~--~~D~i~~~~vlh~~~d--~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~  305 (359)
                          . ....    +... +.+  .||+|++..++|+.+.  ++...+++++.+.|||   ||.+++.+.......... 
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~~~-  203 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMVG-  203 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEET-
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccccceec-
Confidence                0 1111    1111 333  4999999999999753  4567899999999999   999998877533221100 


Q ss_pred             HHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623          306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL  348 (359)
Q Consensus       306 ~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  348 (359)
                              +.    ......++.++|+++|++|||+++++...
T Consensus       204 --------~~----~~~~~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         204 --------KR----EFSCVALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             --------TE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --------cc----cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence                    00    01122358999999999999998887543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.4e-13  Score=122.00  Aligned_cols=92  Identities=17%  Similarity=0.255  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCCh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDD  267 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d  267 (359)
                      .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ +++  .||+|++.+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            4668999999999999999999999999999999 888888765 7889999999998 765  3999999888876   


Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          268 EVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                            +++++++|||   ||.+++..+.
T Consensus       160 ------~~e~~rvLkp---gG~l~~~~p~  179 (268)
T d1p91a_         160 ------AEELARVVKP---GGWVITATPG  179 (268)
T ss_dssp             ------HHHHHHHEEE---EEEEEEEEEC
T ss_pred             ------HHHHHHHhCC---CcEEEEEeeC
Confidence                  4678899999   9999998764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=4.4e-13  Score=117.21  Aligned_cols=122  Identities=16%  Similarity=0.240  Sum_probs=95.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC--CCCccEEEecchhc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS--IPSADAFLFKLIFH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~--~~~~D~i~~~~vlh  263 (359)
                      ..++.+|||+|||+|.+++.+++.  +.+++++|+ +.+++.+++     .-+++++.+|+.+.  ...||+|+++...+
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence            467899999999999999988875  468999999 888887764     44677888988763  33599999864443


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY  343 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  343 (359)
                           ...++++.++++|||   ||++++.+....                            ..+++.+.++++||++.
T Consensus       196 -----~l~~l~~~~~~~Lkp---GG~lilSgil~~----------------------------~~~~v~~~~~~~Gf~~~  239 (254)
T d2nxca1         196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred             -----cHHHHHHHHHHhcCC---CcEEEEEecchh----------------------------hHHHHHHHHHHCCCEEE
Confidence                 346788999999999   999988654310                            35677889999999998


Q ss_pred             eEEecCCc
Q 043623          344 KITPLLGL  351 (359)
Q Consensus       344 ~~~~~~~~  351 (359)
                      +.......
T Consensus       240 ~~~~~~~W  247 (254)
T d2nxca1         240 EEAAEGEW  247 (254)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCE
Confidence            88776653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.4e-13  Score=117.79  Aligned_cols=138  Identities=10%  Similarity=0.142  Sum_probs=93.8

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC---------------------------
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDN---------------------------  238 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~r---------------------------  238 (359)
                      ...+.+|||||||+|.+....+..... +++++|. +.+++.+++     ...                           
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            345789999999999876544444333 7999999 778776542     111                           


Q ss_pred             ---c-eEEeCCCCCC-------CC--CccEEEecchhccCC--hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC
Q 043623          239 ---L-KFIAGDMNQS-------IP--SADAFLFKLIFHDYD--DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK  303 (359)
Q Consensus       239 ---v-~~~~~d~~~~-------~~--~~D~i~~~~vlh~~~--d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~  303 (359)
                         + .....|..++       .+  .||+|++.++||+.+  .++..++|+++++.|||   ||.+++.+.........
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~~  207 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYLA  207 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEEE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCccccc
Confidence               1 2334455541       11  399999999999875  23567899999999999   99998887754321110


Q ss_pred             chHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEE
Q 043623          304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT  346 (359)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  346 (359)
                      .          ..   .......+.++++++|+++||+++++.
T Consensus       208 ~----------~~---~~~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         208 G----------EA---RLTVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             T----------TE---EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             C----------Cc---ccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence            0          00   001123599999999999999987654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.31  E-value=1.6e-12  Score=113.19  Aligned_cols=101  Identities=19%  Similarity=0.191  Sum_probs=79.1

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--  251 (359)
                      .++...+  +.++.+|||+|||+|.++..+++. .|+.+++++|. +++++.|++       ..+|++..+|+.+..+  
T Consensus        76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~  153 (250)
T d1yb2a1          76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  153 (250)
T ss_dssp             -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence            4555555  788999999999999999999987 68889999999 677776653       5789999999988544  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .||+|++     +++++.  .+|.++.++|||   ||++++..+
T Consensus       154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~P  187 (250)
T d1yb2a1         154 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYLP  187 (250)
T ss_dssp             CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEES
T ss_pred             eeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEEeC
Confidence            4999986     345443  669999999999   999988644

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=1.2e-11  Score=106.18  Aligned_cols=141  Identities=19%  Similarity=0.129  Sum_probs=100.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCCC--C----CCccEEEec
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQS--I----PSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~~--~----~~~D~i~~~  259 (359)
                      +.++.+|||+|||+|.++..+++.. |+.+++++|+ +.+++.++    ...++..+..|...+  +    +.+|+++. 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~-  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE-  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence            6789999999999999999999974 8889999999 77776654    367788888887662  2    23676654 


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                       .+++.++  ...+++++++.|||   ||+++|+..........++   . .               -..+.++++ +.|
T Consensus       150 -d~~~~~~--~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~~---~-~---------------v~~~v~~l~-~~g  203 (227)
T d1g8aa_         150 -DVAQPTQ--AKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKEP---E-Q---------------VFREVEREL-SEY  203 (227)
T ss_dssp             -CCCSTTH--HHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSCH---H-H---------------HHHHHHHHH-HTT
T ss_pred             -Eccccch--HHHHHHHHHHhccc---CCeEEEEEECCccCCCCCH---H-H---------------HHHHHHHHH-HcC
Confidence             3333333  45789999999999   9998887654433332221   0 0               122334444 569


Q ss_pred             CceeeEEecCC---cceEEEEEC
Q 043623          340 FTSYKITPLLG---LRSFIEVYL  359 (359)
Q Consensus       340 f~~~~~~~~~~---~~~~i~~~~  359 (359)
                      |++.+...+.+   .+.++.++|
T Consensus       204 f~iie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         204 FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             CEEEEEEcCCCCCCceEEEEEEe
Confidence            99999988754   378888886

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-13  Score=118.30  Aligned_cols=134  Identities=16%  Similarity=0.098  Sum_probs=89.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEE----
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFL----  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~----  257 (359)
                      ..+.+|||||||+|..+..+++..| .+++++|+ +.+++.+++     ..++.++.+|...   +++  .||.|+    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            4568999999999999999998765 48999999 788887754     5567777776543   333  377776    


Q ss_pred             -ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHH
Q 043623          258 -FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFF  336 (359)
Q Consensus       258 -~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~  336 (359)
                       ....++|+.+.  ..++++++++|||   ||.+++.+......           ...   ...........+.+...|.
T Consensus       131 ~~~~~~~~~~~~--~~~~~~~~r~Lkp---GG~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~l~  191 (229)
T d1zx0a1         131 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWGE-----------LMK---SKYSDITIMFEETQVPALL  191 (229)
T ss_dssp             CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHHH-----------HTT---TTCSCHHHHHHHHTHHHHH
T ss_pred             ccccccccccCH--HHHHHHHHHHcCC---CcEEEEEecCCcch-----------hhh---hhhhhcchhhhhHHHHHHH
Confidence             46677776664  4789999999999   89887643221100           000   0000001112456677888


Q ss_pred             hcCCceeeEE
Q 043623          337 DAGFTSYKIT  346 (359)
Q Consensus       337 ~aGf~~~~~~  346 (359)
                      ++||+...+.
T Consensus       192 ~agF~~~~i~  201 (229)
T d1zx0a1         192 EAGFRRENIR  201 (229)
T ss_dssp             HTTCCGGGEE
T ss_pred             HCCCeeEEEE
Confidence            9999876664

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.30  E-value=1.2e-12  Score=109.49  Aligned_cols=101  Identities=20%  Similarity=0.298  Sum_probs=81.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~  251 (359)
                      .++..+.  ..++.+|||||||+|.++..+++..  .+++++|. +++++.+++       .+||+++.+|+.+   +.+
T Consensus        24 ~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~   99 (186)
T d1l3ia_          24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (186)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence            4555555  6788999999999999999998864  48999999 788887764       5799999999877   334


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .||+|++....++     ...+++.+.+.|+|   ||++++...
T Consensus       100 ~~D~v~~~~~~~~-----~~~~~~~~~~~Lkp---gG~lvi~~~  135 (186)
T d1l3ia_         100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAI  135 (186)
T ss_dssp             CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CcCEEEEeCcccc-----chHHHHHHHHHhCc---CCEEEEEee
Confidence            6999999876654     24679999999999   898887543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=2.3e-12  Score=112.84  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SI  250 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~  250 (359)
                      .++...+  ..++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++         .+++.++.+|+.+ ++
T Consensus        87 ~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~  164 (264)
T d1i9ga_          87 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  164 (264)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence            4566666  789999999999999999999997 69999999999 778777653         5799999999987 55


Q ss_pred             C--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          251 P--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       251 ~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      +  .||+|++     +++++.  .++.+++++|||   ||++++..++.
T Consensus       165 ~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~i  203 (264)
T d1i9ga_         165 PDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVATV  203 (264)
T ss_dssp             CTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESSH
T ss_pred             cCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCcc
Confidence            5  4999976     466654  669999999999   99999877653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.9e-12  Score=115.67  Aligned_cols=111  Identities=11%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCceEEeCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------------TDNLKFIAGD  245 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------------~~rv~~~~~d  245 (359)
                      ..+++.+.  +.++.+|||||||+|.++..+++.++..+++|+|+ +.+++.|+.               ..+|+++.+|
T Consensus       141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            45677666  78889999999999999999999999889999999 777665532               4689999999


Q ss_pred             CCC-CCC----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          246 MNQ-SIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       246 ~~~-~~~----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      +.+ ++.    ++|+|++.+.+| ++  +..+.|+++.+.|||   ||++++.+...+..
T Consensus       219 ~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~~  272 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPLN  272 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             ccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCC---CcEEEEecccCCCC
Confidence            998 543    367888766554 33  346789999999999   99999988765543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=3.6e-12  Score=112.11  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=97.2

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--  251 (359)
                      .++...+  +.++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++       .+++.+...|+...++  
T Consensus        94 ~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~  171 (266)
T d1o54a_          94 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  171 (266)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence            4566666  8899999999999999999999875 8899999999 788877764       5788888888776443  


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW  331 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~  331 (359)
                      .+|.|+     ++++++.  ++|+++.++|||   ||++++..++..                            ..++.
T Consensus       172 ~~D~V~-----~d~p~p~--~~l~~~~~~LKp---GG~lv~~~P~~~----------------------------Qv~~~  213 (266)
T d1o54a_         172 DVDALF-----LDVPDPW--NYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQET  213 (266)
T ss_dssp             SEEEEE-----ECCSCGG--GTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred             ceeeeE-----ecCCCHH--HHHHHHHhhcCC---CCEEEEEeCccc----------------------------HHHHH
Confidence            478765     4567654  679999999999   999998655310                            23455


Q ss_pred             HHHHHhcCCceeeEEe
Q 043623          332 ERLFFDAGFTSYKITP  347 (359)
Q Consensus       332 ~~ll~~aGf~~~~~~~  347 (359)
                      .+.+++.||...++..
T Consensus       214 ~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         214 LKKLQELPFIRIEVWE  229 (266)
T ss_dssp             HHHHHHSSEEEEEEEC
T ss_pred             HHHHHHCCceeEEEEE
Confidence            6777888998777654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.2e-11  Score=107.17  Aligned_cols=134  Identities=11%  Similarity=0.152  Sum_probs=100.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchhc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIFH  263 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vlh  263 (359)
                      ..+.+|||+|||+|..+..++..+|+.+++++|+ +.+++.|++      ..||+++.+|++++.+  .||+|+++--.-
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            4567899999999999999999999999999999 788877764      4689999999999654  499999873221


Q ss_pred             -------------cCCh----------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623          264 -------------DYDD----------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC  320 (359)
Q Consensus       264 -------------~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (359)
                                   +-+.          ....++++.+.+.|+|   ||.+++ |..     ..                 
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig-----~~-----------------  240 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHG-----WQ-----------------  240 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECC-----SS-----------------
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EEC-----ch-----------------
Confidence                         1010          2245688899999999   776655 321     00                 


Q ss_pred             cCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEEEE
Q 043623          321 VPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIEVY  358 (359)
Q Consensus       321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~  358 (359)
                            ..+.+.+++++.||+.+++.. +.+...++.++
T Consensus       241 ------q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         241 ------QGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             ------CHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             ------HHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence                  356678899999999777654 46777777765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=9.7e-12  Score=111.27  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC-----CC-CCcc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ-----SI-PSAD  254 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~-----~~-~~~D  254 (359)
                      ..+..+|||||||+|.++..++++  +.+++++|+ +.+++.|++          ..+..+...|+..     +. ..||
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            455689999999999999999987  578999999 888887753          1233455566543     22 2499


Q ss_pred             EEEec-chhccCCh-----hHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          255 AFLFK-LIFHDYDD-----EVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       255 ~i~~~-~vlh~~~d-----~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +|++. ++++|+++     ++..++|++++++|||   ||.+++.
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~  173 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVID  173 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEEe
Confidence            88865 58887754     4567899999999999   8877663

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=9e-12  Score=106.18  Aligned_cols=98  Identities=19%  Similarity=0.292  Sum_probs=79.7

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP---  251 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~---  251 (359)
                      .++..+.  ++++.+|||||||+|..+..+++.. ++.+++++|. +++++.+++      ..++.++.+|..+..+   
T Consensus        66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            4455555  7889999999999999999999865 6789999998 778777664      6789999999887332   


Q ss_pred             CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .||+|++...+++.+++        +.+.|||   ||++++.
T Consensus       144 ~fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p  174 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP  174 (213)
T ss_dssp             CEEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred             chhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence            49999999999988753        4567999   9998873

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=2.3e-11  Score=102.72  Aligned_cols=95  Identities=19%  Similarity=0.253  Sum_probs=75.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEecchhc
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLFKLIFH  263 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~~~vlh  263 (359)
                      -.|||||||+|.++..+++.+|+..++|+|+ +.++..+.+      .+||.++.+|+.. .  ++  .+|.|++.+...
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            4799999999999999999999999999998 666655432      6789999999876 2  44  489988877664


Q ss_pred             cCChhH------HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          264 DYDDEV------CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       264 ~~~d~~------~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ......      ...+|+.++++|||   ||.|+|.
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~  143 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFK  143 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence            333221      13689999999999   9998885

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.3e-10  Score=107.46  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=84.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCceE-EeC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------------TDNLKF-IAG  244 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------------~~rv~~-~~~  244 (359)
                      ..+++.++  +.++.+|||||||+|..+..+++.++..+++|+|+ +.+++.|++               ...+.+ ..+
T Consensus       206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            45667666  88899999999999999999999998778999999 777776653               233444 456


Q ss_pred             CCCC-C-----CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623          245 DMNQ-S-----IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK  300 (359)
Q Consensus       245 d~~~-~-----~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~  300 (359)
                      ++.. +     ++.+|++++.+.+| .  ++..+.|+++.+.|||   ||+|++.+...+..
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~  339 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKV---GCKIISLKSLRSLT  339 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             chhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence            6665 2     23488898876543 2  3456889999999999   99999988765543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.09  E-value=2.4e-10  Score=96.23  Aligned_cols=94  Identities=16%  Similarity=0.285  Sum_probs=73.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC--CccEEEecchhc
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP--SADAFLFKLIFH  263 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh  263 (359)
                      -.|||||||+|.++..+++.+|+..++|+|+ +.++..+.+      ..+|.++.+|+..   .++  .+|.|++.+. .
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP-d  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-D  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-C
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-c
Confidence            4799999999999999999999999999998 666665532      5789999999876   244  3888876543 2


Q ss_pred             cCChhH-------HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          264 DYDDEV-------CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       264 ~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .|+...       ...+|+.+.+.|+|   ||.|.+.
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~  145 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK  145 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence            344321       14789999999999   9998774

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.6e-11  Score=100.65  Aligned_cols=100  Identities=11%  Similarity=0.125  Sum_probs=78.1

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQS  249 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~  249 (359)
                      .++..+...++++.+|||||||+|..+..+++. .|..+++++|. +++++.+++           .+++.++.+|....
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            344444212578899999999999999999885 57889999998 778776643           47899999998873


Q ss_pred             CC---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          250 IP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       250 ~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .+   .||+|++...+++.+++        +.+.|||   ||++++.
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp---GG~LV~p  180 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVPQA--------LIDQLKP---GGRLILP  180 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             cchhhhhhhhhhhcchhhcCHH--------HHhhcCC---CcEEEEE
Confidence            32   49999999999887652        5677999   9999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-10  Score=105.11  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             HHHHhhcCccch-----HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------
Q 043623          170 FNQGLASDSQMA-----KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------  235 (359)
Q Consensus       170 f~~~~~~~~~~~-----~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------  235 (359)
                      |...|...++..     ..|+..++  +.++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++       
T Consensus        71 ~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~  148 (324)
T d2b25a1          71 YVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD  148 (324)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhh
Confidence            444455544443     35666666  889999999999999999999986 58899999999 677665542       


Q ss_pred             ----------CCCceEEeCCCCCC---CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          236 ----------TDNLKFIAGDMNQS---IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       236 ----------~~rv~~~~~d~~~~---~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                                .++|.++.+|+.+.   ++  .||+|++     +++++.  .+|.++.++|||   ||++++.-++.
T Consensus       149 ~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P~i  215 (324)
T d2b25a1         149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVVNI  215 (324)
T ss_dssp             HHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEESSH
T ss_pred             hhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeCCH
Confidence                      57899999998762   22  4999876     455543  469999999999   99999876543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=2.4e-10  Score=103.17  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC-------CCCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP-------ETDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~-------~~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      .++++|||||||+|.++..+++..+. +++++|..+....++       ..++|+++.+|+.+ +.+  .+|+|++..+.
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            35689999999999999988887554 899999843332222       27889999999998 555  49999988777


Q ss_pred             ccCChh-HHHHHHHHHHHhcCCCCCCceEE
Q 043623          263 HDYDDE-VCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       263 h~~~d~-~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      |....+ ....++..+.+.|+|   ||+++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp---~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAP---DGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence            765544 356789999999999   88776

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=2.7e-10  Score=103.41  Aligned_cols=95  Identities=14%  Similarity=0.182  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLIF  262 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~vl  262 (359)
                      .++++|||||||+|.++..++++... +++++|..+++..+++       .++|+++.+|+.+ +.|  .||+|++..+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            35789999999999999988886543 8999998655544432       7889999999998 665  49999998777


Q ss_pred             ccCChh-HHHHHHHHHHHhcCCCCCCceEE
Q 043623          263 HDYDDE-VCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       263 h~~~d~-~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      +....+ ....++..+.+.|||   ||.++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVE---GGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence            665433 345678888999999   78765

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.2e-10  Score=99.33  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC-------CCCCceEEeCCCCC-CCC--CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP-------ETDNLKFIAGDMNQ-SIP--SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~-------~~~rv~~~~~d~~~-~~~--~~D~i~~~~v  261 (359)
                      ..++++|||||||+|.++..++++.+. +++++|..+....++       ..++|+++.+|+.+ +.+  .||+|++..+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~-~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCC-EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            446789999999999999999987664 899999843322221       27889999999998 554  4999999888


Q ss_pred             hccCChhH-HHHHHHHHHHhcCCCCCCceEEE
Q 043623          262 FHDYDDEV-CLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       262 lh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      .|....+. ...++....+.|+|   ||+++-
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~iip  140 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAK---GGSVYP  140 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEE---EEEEES
T ss_pred             eeecccccccHHHHHHHHhcCCC---CcEEec
Confidence            77766554 34667777889999   887763

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.97  E-value=4.5e-10  Score=95.79  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCCCC---Ccc
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQSIP---SAD  254 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~~~---~~D  254 (359)
                      .++..++  +.++.+|||||||+|.++..+++..  .+++.+|. ++.++.+++    ..++.++.+|....++   +||
T Consensus        61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            4566666  7889999999999999999888874  47999998 666665543    6899999999887433   499


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +|++...+++.++.        +.+.|+|   ||+|++.
T Consensus       137 ~Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTLLCK--------PYEQLKE---GGIMILP  164 (224)
T ss_dssp             EEEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             HHHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence            99999988877652        4467999   9998873

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=1.8e-09  Score=89.84  Aligned_cols=111  Identities=16%  Similarity=0.272  Sum_probs=86.6

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C-----
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S-----  249 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~-----  249 (359)
                      .+++..+.  ..++..+||++||+|.++..+++++|+.+++++|. +++++.+++     .+|+.++.++|.+ .     
T Consensus        13 ~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          13 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            66777766  67789999999999999999999999999999999 888887764     6799999999875 1     


Q ss_pred             --CCCccEEEecchhcc--C-----ChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          250 --IPSADAFLFKLIFHD--Y-----DDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       250 --~~~~D~i~~~~vlh~--~-----~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                        ...+|.|++-..+..  +     .-....+.|..+.+.|+|   ||+++|+.+..
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s  144 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHS  144 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSH
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeecccc
Confidence              235888876533311  0     112234779999999999   99999987653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.87  E-value=1.7e-09  Score=90.33  Aligned_cols=98  Identities=12%  Similarity=0.160  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCCchHH----HHHHHHHC----CCCeEEEeec-hHHHhcCCC----------------------------
Q 043623          193 DGLSSLVEVGGGTGSF----ARIISEAF----PSIKCSVLEL-PHVIADLPE----------------------------  235 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~----~~~l~~~~----p~~~~~~~D~-~~~i~~a~~----------------------------  235 (359)
                      .+..+|+++|||+|.-    ++.+.+..    +++++++.|+ +.+++.|+.                            
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3457999999999973    33344332    3457999999 677765541                            


Q ss_pred             ---------CCCceEEeCCCCC-C---CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          236 ---------TDNLKFIAGDMNQ-S---IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       236 ---------~~rv~~~~~d~~~-~---~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                               ...+.+...+... .   ...||+|+|.++|++++++...+++++++++|+|   ||.|+|-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence                     1235566666665 2   2249999999999999999989999999999999   8877764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=3.3e-09  Score=92.58  Aligned_cols=120  Identities=14%  Similarity=0.127  Sum_probs=88.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CCCccEEEecch
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IPSADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~~~D~i~~~~v  261 (359)
                      ..++.+|||+|||+|.++..++++ +..+++++|+ |.+++.+++       .++|+++.+|+.+ . ...||.|++...
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            457899999999999999999987 4569999999 777766653       6789999999988 3 224999987632


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT  341 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~  341 (359)
                      -      ....+|..+.+.|+|   ||.|.+.+....+....                      ...+.+.++.++.||+
T Consensus       184 ~------~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~~~~----------------------~~~e~~~~~~~~~g~~  232 (260)
T d2frna1         184 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMPR----------------------EPFETFKRITKEYGYD  232 (260)
T ss_dssp             S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTTT----------------------TTHHHHHHHHHHTTCE
T ss_pred             C------chHHHHHHHHhhcCC---CCEEEEEeccccccchh----------------------hHHHHHHHHHHHcCCc
Confidence            1      123568888899999   88887766543322111                      1356677888889998


Q ss_pred             ee
Q 043623          342 SY  343 (359)
Q Consensus       342 ~~  343 (359)
                      +.
T Consensus       233 v~  234 (260)
T d2frna1         233 VE  234 (260)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.80  E-value=3.7e-09  Score=90.06  Aligned_cols=100  Identities=15%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH------CCCCeEEEeec-hHHHhcCCC-----------CCCceEEeC
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA------FPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAG  244 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~------~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~  244 (359)
                      .++..+...+.++.+|||||||+|+.+..+++.      .+..+++.+|. ++.++.+++           ..+|.++.+
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            344444212678899999999999999888775      34568999998 677766543           468999999


Q ss_pred             CCCCCCC---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          245 DMNQSIP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       245 d~~~~~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      |..+.++   .||.|++...+.+.++.        +.+.|+|   ||++++.
T Consensus       149 d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p  189 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP  189 (223)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             ccccccccccceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence            9988333   49999999999877652        4567999   8998773

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.79  E-value=3e-09  Score=89.94  Aligned_cols=97  Identities=22%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---C
Q 043623          183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP---S  252 (359)
Q Consensus       183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~---~  252 (359)
                      .++..++  +.++.+|||||||+|+.+..+++.. +.+++++|. ++.++.+++      .+++.++.+|....++   .
T Consensus        69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            4455555  7888999999999999999888754 356888988 667766653      6899999999988433   4


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||.|++...+...++.        +.+.|+|   ||++++.
T Consensus       146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p  175 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP  175 (215)
T ss_dssp             EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence            9999999999877653        3456899   8988863

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8.1e-08  Score=83.06  Aligned_cols=73  Identities=11%  Similarity=0.135  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC----CC-----CCccE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ----SI-----PSADA  255 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~----~~-----~~~D~  255 (359)
                      ....++||||||+|..+..++++.|+++++++|+ +++++.|++       .+|+.++..+...    ..     ..||+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            4457999999999999999999999999999999 788877764       7888887755433    11     13999


Q ss_pred             EEecchhccC
Q 043623          256 FLFKLIFHDY  265 (359)
Q Consensus       256 i~~~~vlh~~  265 (359)
                      |+++--.+.-
T Consensus       140 ivsNPPY~~~  149 (250)
T d2h00a1         140 CMCNPPFFAN  149 (250)
T ss_dssp             EEECCCCC--
T ss_pred             EEecCccccc
Confidence            9988776543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.49  E-value=7.5e-08  Score=79.89  Aligned_cols=67  Identities=16%  Similarity=0.290  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCCCCCccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQSIPSADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~~~~~D~i~~~~v  261 (359)
                      .+++|||+|||+|.++..++...+. +++++|+ +.+++.+++ ..++.++.+|+.+....||+|+++=-
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP  116 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP  116 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence            3689999999999999888876554 8999999 778887776 67899999999874345999998743

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.47  E-value=2.4e-08  Score=79.82  Aligned_cols=95  Identities=8%  Similarity=0.129  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C--CCCccEEEecch
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S--IPSADAFLFKLI  261 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~--~~~~D~i~~~~v  261 (359)
                      .+.+|||+|||+|.++.+.+.+... +++++|. +.+++.+++       .++++++.+|..+  +  ...||+|++.--
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            4689999999999999999888765 9999999 777765442       5789999999876  2  235999988532


Q ss_pred             hccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeee
Q 043623          262 FHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIV  296 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~  296 (359)
                      .   .......+|..+..  .|+|   +|. +++|..
T Consensus        93 y---~~~~~~~~l~~i~~~~~L~~---~g~-iiiE~~  122 (152)
T d2esra1          93 Y---AKETIVATIEALAAKNLLSE---QVM-VVCETD  122 (152)
T ss_dssp             S---HHHHHHHHHHHHHHTTCEEE---EEE-EEEEEE
T ss_pred             h---ccchHHHHHHHHHHCCCcCC---CeE-EEEEeC
Confidence            1   22334456666654  5888   555 455543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=5.3e-07  Score=80.24  Aligned_cols=97  Identities=10%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC---CCC-CccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ---SIP-SADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~---~~~-~~D~i  256 (359)
                      +.+++||.||+|.|..+..+++..|..+++++|+ |++++.+++           .+|++++.+|..+   ..+ .||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            5678999999999999999999888889999999 788876542           6799999999887   223 49999


Q ss_pred             EecchhccCC---h---hHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          257 LFKLIFHDYD---D---EVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       257 ~~~~vlh~~~---d---~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ++-.. ..+.   .   --..++++.+++.|+|   ||.+++.
T Consensus       156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~  194 (312)
T d1uira_         156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ  194 (312)
T ss_dssp             EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEeCC-CcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence            96432 1111   1   1124789999999999   7766553

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.37  E-value=1.3e-07  Score=85.09  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=73.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-------CCCccEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-------IPSADAF  256 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-------~~~~D~i  256 (359)
                      ..++.+|||+|||+|.++..++..... +++++|+ +.+++.+++       .++++++.+|+++.       -..||+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~-~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCc-EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            456899999999999999999987543 8999999 777776653       46889999998761       1249999


Q ss_pred             Eecchh---ccCChhH----HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          257 LFKLIF---HDYDDEV----CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       257 ~~~~vl---h~~~d~~----~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ++.--.   +.-....    -.+++..+.+.|+|   ||.|+.+..
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s~  264 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC  264 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence            985322   1111111    23578888999999   887777654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=3.4e-07  Score=79.64  Aligned_cols=66  Identities=14%  Similarity=0.328  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC----CccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP----SADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~----~~D~i~~~  259 (359)
                      .+..+|+|+|||+|..+..+++ +|+.+++++|+ +++++.|++       .+++.+..+|++++.+    .||+|+++
T Consensus       109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            3457899999999999999875 69999999999 778777653       5788899999988432    49999987

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=1.7e-07  Score=79.11  Aligned_cols=98  Identities=17%  Similarity=0.191  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC---------CCCcc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS---------IPSAD  254 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~---------~~~~D  254 (359)
                      .++++|||||||+|..+..+++..+ +.+++.+|. ++..+.++.       .++|+++.||..+-         ...||
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            4578999999999999999999875 689999998 667666553       67899999998651         12489


Q ss_pred             EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      +|++-+   ..........+.++.+.|+|   || ++|+|.+.
T Consensus       135 ~ifiD~---~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl  170 (214)
T d2cl5a1         135 MVFLDH---WKDRYLPDTLLLEKCGLLRK---GT-VLLADNVI  170 (214)
T ss_dssp             EEEECS---CGGGHHHHHHHHHHTTCEEE---EE-EEEESCCC
T ss_pred             eeeecc---cccccccHHHHHHHhCccCC---Cc-EEEEeCcC
Confidence            998763   22222223346677788999   66 55555543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.33  E-value=5e-07  Score=75.33  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchhc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIFH  263 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vlh  263 (359)
                      .+.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.+++     ..+++++.+|..+....||+|+++--..
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG  120 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence            468999999999999998887644 48999999 677766553     5678889999877444699999875543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.2e-07  Score=77.52  Aligned_cols=98  Identities=12%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCC--C-------CCCc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQ--S-------IPSA  253 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~--~-------~~~~  253 (359)
                      ..++++|||||||+|.-+..+++..| +.+++.+|. ++..+.|+       ..++++++.||..+  +       ...|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            34679999999999999999999886 689999998 55555444       37899999999765  1       1249


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      |+|+.-.     +...-...+..+.+.|+|   ||.|++-+..+
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---GGvii~Dn~l~  172 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRP---GGILAVLRVLW  172 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcC---CcEEEEeCCcc
Confidence            9998863     223346788999999999   66655544443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=5.5e-07  Score=73.06  Aligned_cols=95  Identities=11%  Similarity=0.064  Sum_probs=60.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-----CCCCccEEEe
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-----SIPSADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-----~~~~~D~i~~  258 (359)
                      ...+.+|||+|||+|.++++.+.+.  .+++++|. +.+++.+++       .+++....+|.+.     ....||+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            4567899999999999999988874  57889998 777776653       4455555555432     2235999987


Q ss_pred             cchhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          259 KLIFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       259 ~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .=- ++.+..+ ...++.  ...|+|   || ++++|.
T Consensus       117 DPP-Y~~~~~~~l~~l~~--~~ll~~---~g-~ivie~  147 (171)
T d1ws6a1         117 APP-YAMDLAALFGELLA--SGLVEA---GG-LYVLQH  147 (171)
T ss_dssp             CCC-TTSCTTHHHHHHHH--HTCEEE---EE-EEEEEE
T ss_pred             ccc-cccCHHHHHHHHHH--cCCcCC---Ce-EEEEEe
Confidence            532 2233222 222222  246888   66 455554

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=7e-07  Score=79.83  Aligned_cols=97  Identities=7%  Similarity=0.001  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-------CCCccEEEec
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-------IPSADAFLFK  259 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-------~~~~D~i~~~  259 (359)
                      .+.+|||++||+|.++..++..  ..+++++|. +.+++.+++      -++++++.+|.++.       -..||+|++.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4689999999999999998864  448999999 778877764      46799999998751       1249999985


Q ss_pred             chhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          260 LIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       260 ~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ---...+.       ..-.++++.+.+.|+|   ||.|+....
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~sc  262 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC  262 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence            32211111       1123688899999999   887776544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=6.2e-07  Score=78.89  Aligned_cols=98  Identities=12%  Similarity=0.148  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CCC-CccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SIP-SADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~~-~~D~i~  257 (359)
                      +.+++||-||+|.|..+.++++..|..+++++|+ |.+++.+++          .+|++++.+|..+   ..+ .||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4679999999999999999999877789999999 788877653          6899999999876   222 499999


Q ss_pred             ecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +-..-..-...   -..++++.+++.|+|   ||.+++.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q  203 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  203 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence            75322111110   024789999999999   7766554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.15  E-value=1.2e-06  Score=75.18  Aligned_cols=89  Identities=19%  Similarity=0.307  Sum_probs=69.0

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC-cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS-AD  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~-~D  254 (359)
                      ..+++...  ..+..+|||||||+|.++..|++..  .+++++|. +.+++.+++    .++++++.+|+++ +++. .+
T Consensus        19 ~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence            56777666  6778899999999999999999984  47999998 566666654    5789999999999 7664 45


Q ss_pred             EEEecchhccCChhHHHHHH
Q 043623          255 AFLFKLIFHDYDDEVCLKLL  274 (359)
Q Consensus       255 ~i~~~~vlh~~~d~~~~~iL  274 (359)
                      ..+.++.-++.+-+-..+++
T Consensus        95 ~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          95 YKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             EEEEEECCSSSCHHHHHHHH
T ss_pred             eeEeeeeehhhhHHHHHHHh
Confidence            56778888888875444443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.12  E-value=1.9e-06  Score=73.46  Aligned_cols=83  Identities=17%  Similarity=0.338  Sum_probs=61.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCC-CCCC-cc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQ-SIPS-AD  254 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~-~~~~-~D  254 (359)
                      ..+++..+  ..++.+|||||||+|.++..+++..  .+++++|+ +..++.++    ..++++++.+|+.+ +++. ..
T Consensus        11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~   86 (235)
T d1qama_          11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS   86 (235)
T ss_dssp             HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence            44555555  6788999999999999999999974  37888888 55555443    37899999999998 6664 34


Q ss_pred             EEEecchhccCChh
Q 043623          255 AFLFKLIFHDYDDE  268 (359)
Q Consensus       255 ~i~~~~vlh~~~d~  268 (359)
                      ..+.++.-++.+-+
T Consensus        87 ~~vv~NLPYnIss~  100 (235)
T d1qama_          87 YKIFGNIPYNISTD  100 (235)
T ss_dssp             CEEEEECCGGGHHH
T ss_pred             ceeeeeehhhhhHH
Confidence            55667776666553

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.2e-06  Score=76.68  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CCC-CccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SIP-SADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~~-~~D~i~  257 (359)
                      +.+++||-||+|.|..+..+++..+..+++++|+ |.+++.+++          .+|++++.+|..+   ..+ .||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            5678999999999999999998777889999999 888887753          6899999999876   223 499999


Q ss_pred             ecchhccCChhH---HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDDEV---CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d~~---~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +-. .+......   ..++++.+++.|+|   ||.+++.
T Consensus       157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q  191 (285)
T d2o07a1         157 TDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ  191 (285)
T ss_dssp             EEC-C-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence            763 22222111   23679999999999   7766554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=1.8e-06  Score=75.32  Aligned_cols=97  Identities=13%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CCC-CccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SIP-SADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~~-~~D~i~  257 (359)
                      +.+++||-||+|.|..+..+++..|..+++++|+ |++++.+++          .+|++++.+|...   ..+ .||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4678999999999999999999777789999999 778776642          6899999999876   222 499998


Q ss_pred             ecchhccCCh-h--HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDD-E--VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d-~--~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .-..= .... .  -..++++.+++.|+|   +|.++..
T Consensus       154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~q  188 (274)
T d1iy9a_         154 VDSTE-PVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (274)
T ss_dssp             ESCSS-CCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCC-CCCcchhhccHHHHHHHHhhcCC---CceEEEe
Confidence            76421 1111 0  124789999999999   7765543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.07  E-value=1.2e-06  Score=76.49  Aligned_cols=96  Identities=14%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCceEEeCCCCC---CCCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------------TDNLKFIAGDMNQ---SIPS  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------------~~rv~~~~~d~~~---~~~~  252 (359)
                      +++++||.||+|.|..+.++++ +|..+++++|+ |.+++.+++                .+|++++.+|..+   .-..
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            5679999999999999999987 45568999999 788876642                5799999999875   2245


Q ss_pred             ccEEEecchhccCChhH---HHHHHHHHHHhcCCCCCCceEEEE
Q 043623          253 ADAFLFKLIFHDYDDEV---CLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~---~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ||+|++-.. ...+...   ..++++.+++.|+|   ||.+++.
T Consensus       150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q  189 (276)
T d1mjfa_         150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ  189 (276)
T ss_dssp             EEEEEEECC-CCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence            999987432 2222111   24789999999999   7766544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=2.1e-06  Score=70.28  Aligned_cols=95  Identities=11%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C--CCCccEEEecchh
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S--IPSADAFLFKLIF  262 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~--~~~~D~i~~~~vl  262 (359)
                      .+.+|||++||+|.++.+.+.+... +++.+|. +.+++.+++      ..+++++.+|.++  .  ...||+|++.--.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            3579999999999999999988765 8999998 667665543      5678899999876  2  2249999997543


Q ss_pred             ccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeee
Q 043623          263 HDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIV  296 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~  296 (359)
                      ..   ....+++..+.+  .|++   +| ++++|..
T Consensus       122 ~~---~~~~~~l~~l~~~~~L~~---~~-iIiiE~~  150 (183)
T d2fpoa1         122 RR---GLLEETINLLEDNGWLAD---EA-LIYVESE  150 (183)
T ss_dssp             ST---TTHHHHHHHHHHTTCEEE---EE-EEEEEEE
T ss_pred             cc---chHHHHHHHHHHCCCCCC---Ce-EEEEEec
Confidence            22   223455666655  5888   55 5555543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=2.4e-06  Score=75.06  Aligned_cols=97  Identities=14%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CCC--CccEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SIP--SADAF  256 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~~--~~D~i  256 (359)
                      +.+++||-||+|.|..+.++++..|-.+++++|+ +++++.+++          .+|++++.+|..+   ..+  .||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            5678999999999999999999777778999999 788877653          7999999999775   222  49999


Q ss_pred             EecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          257 LFKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       257 ~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      +.-.. ......   -..++++.+++.|+|   ||.+++.
T Consensus       159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q  194 (290)
T d1xj5a_         159 IVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQ  194 (290)
T ss_dssp             EECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence            97432 111111   124689999999999   7766654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.01  E-value=3.5e-06  Score=74.29  Aligned_cols=100  Identities=15%  Similarity=0.155  Sum_probs=71.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCC-------CCCccE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQS-------IPSADA  255 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~-------~~~~D~  255 (359)
                      ..++.+|||+.||+|.++..++..  +.+++.+|. +.+++.+++        ..+++|+.+|+++-       -..||+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            456789999999999999998876  458999999 777777663        45799999999862       124999


Q ss_pred             EEec---chhc----cCC-hhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          256 FLFK---LIFH----DYD-DEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       256 i~~~---~vlh----~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      |++.   +.-.    .+. ......+++.+.+.|+|   ||.++++...
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~~  253 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY  253 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEecC
Confidence            9983   1110    111 12234567788889999   7876666543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=4e-06  Score=69.74  Aligned_cols=92  Identities=12%  Similarity=0.229  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCceEEeCCCCCC--CCCccEEEecchhcc
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQS--IPSADAFLFKLIFHD  264 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~~--~~~~D~i~~~~vlh~  264 (359)
                      +..+|+|||+|.|..++-++-.+|+.+++.+|. .   ..++.+..   -++|+++....++.  ...||+|++..+-  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence            357999999999999999999999999999997 2   22332221   46899999988882  3359999887652  


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          265 YDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                        +  ...++.-+...+++   +|+++..-
T Consensus       143 --~--~~~ll~~~~~~l~~---~g~~~~~K  165 (207)
T d1jsxa_         143 --S--LNDMVSWCHHLPGE---QGRFYALK  165 (207)
T ss_dssp             --S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred             --C--HHHHHHHHHHhcCC---CcEEEEEC
Confidence              2  34678888888999   89888765

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.00  E-value=3.7e-06  Score=71.13  Aligned_cols=96  Identities=15%  Similarity=0.047  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C--------CCCc
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S--------IPSA  253 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~--------~~~~  253 (359)
                      .++++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++       .++|+++.+|..+  +        ...|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4579999999999999999999987 679999998 655554442       7889999999875  1        1249


Q ss_pred             cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      |+|+.-.    +. ..-...+..+.+.|+|   ||.|++-+..
T Consensus       138 D~iFiDa----~k-~~y~~~~e~~~~ll~~---gGiii~DNvl  172 (227)
T d1susa1         138 DFIFVDA----DK-DNYLNYHKRLIDLVKV---GGVIGYDNTL  172 (227)
T ss_dssp             SEEEECS----CS-TTHHHHHHHHHHHBCT---TCCEEEETTT
T ss_pred             eEEEecc----ch-hhhHHHHHHHHhhcCC---CcEEEEccCC
Confidence            9999863    22 3356789999999999   7766555443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.99  E-value=2.4e-06  Score=75.44  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---C-CCCccEEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---S-IPSADAFL  257 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~-~~~~D~i~  257 (359)
                      +.+++||-||+|.|..+.++++..|-.+++++|+ +.+++.+++          .+|++++.+|..+   . -..||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            5678999999999999999999777679999999 778776653          5899999999876   2 22499999


Q ss_pred             ecchhccCCh---hHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          258 FKLIFHDYDD---EVCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       258 ~~~vlh~~~d---~~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      .-..- ....   --..++++.+++.|+|   ||.++..
T Consensus       185 ~D~~d-p~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q  219 (312)
T d2b2ca1         185 TDSSD-PVGPAESLFGQSYYELLRDALKE---DGILSSQ  219 (312)
T ss_dssp             ECCC--------------HHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCC-CCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence            75321 1111   1134679999999999   6765554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.94  E-value=3.2e-06  Score=75.24  Aligned_cols=99  Identities=11%  Similarity=0.057  Sum_probs=69.6

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCC------C-CCccE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQS------I-PSADA  255 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~------~-~~~D~  255 (359)
                      ..++.+|||+.||+|.+++..+.... .+++++|+ +..++.+++        ..+++++.+|.++-      . ..||+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            34678999999999999998777533 37999998 666665542        46899999999761      1 24999


Q ss_pred             EEecch---h---ccCC-hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          256 FLFKLI---F---HDYD-DEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       256 i~~~~v---l---h~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      |++---   -   ..+. -..-.++++.+.+.|+|   ||.|++..
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~s  263 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST  263 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence            997411   0   0011 11234689999999999   78776644

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=3.5e-05  Score=62.53  Aligned_cols=108  Identities=18%  Similarity=0.227  Sum_probs=79.7

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-C-------C
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-S-------I  250 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~-------~  250 (359)
                      .+++..+.  ..++..++|..+|.|+++..++++  +.+++++|. |+++..++.  .+|+.++.+++.+ .       .
T Consensus         8 ~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2           8 QEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence            56676665  577899999999999999999997  568999999 778776653  6799999998876 1       2


Q ss_pred             CCccEEEecchh-----ccCCh--hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          251 PSADAFLFKLIF-----HDYDD--EVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       251 ~~~D~i~~~~vl-----h~~~d--~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ..+|.|++---+     .+...  ......|......|+|   ||+++|+.+.
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fh  133 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFH  133 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecc
Confidence            247877764322     21111  1133478888999999   9999988763

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=7.6e-06  Score=56.41  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|++.+..+++|.|..|||+.+|+   +...+.|+|..|...|++.+++        ++.|++++.
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~---~~st~~rll~tL~~~g~l~~~~--------~g~y~lG~~   63 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYK   63 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCCEeecHH
Confidence            4566777766689999999999999   5789999999999999999986        578999975

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=2.4e-05  Score=66.25  Aligned_cols=121  Identities=16%  Similarity=0.235  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCceEEeCCCCC-----CC-CCccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ-----SI-PSADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~-----~~-~~~D~i~~~  259 (359)
                      ....+++|||+|.|..++-++-.+|+.+++.+|. .   ..++.+..   -.++.++....++     +. ..||+|++.
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence            4567999999999999999999999999999997 2   23332221   4678887776653     12 249999998


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG  339 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG  339 (359)
                      .+-    +  ...++.-+...+++   ||++++.-.-.    ..    .                  ..++.++.++..|
T Consensus       149 Ava----~--l~~ll~~~~~~l~~---~g~~i~~KG~~----~~----~------------------El~~a~~~~~~~~  193 (239)
T d1xdza_         149 AVA----R--LSVLSELCLPLVKK---NGLFVALKAAS----AE----E------------------ELNAGKKAITTLG  193 (239)
T ss_dssp             CCS----C--HHHHHHHHGGGEEE---EEEEEEEECC-----CH----H------------------HHHHHHHHHHHTT
T ss_pred             hhh----C--HHHHHHHHhhhccc---CCEEEEECCCC----hH----H------------------HHHHHHHHHHHcC
Confidence            643    2  34678889999999   89888765321    00    0                  2345566778888


Q ss_pred             CceeeEEec
Q 043623          340 FTSYKITPL  348 (359)
Q Consensus       340 f~~~~~~~~  348 (359)
                      ++..++...
T Consensus       194 ~~~~~v~~~  202 (239)
T d1xdza_         194 GELENIHSF  202 (239)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            887766543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.75  E-value=1.4e-05  Score=71.50  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHH-----CCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC--CCCccEEEec
Q 043623          193 DGLSSLVEVGGGTGSFARIISEA-----FPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS--IPSADAFLFK  259 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~--~~~~D~i~~~  259 (359)
                      .++.+|+|.+||+|.++..+.++     .++.+++|+|+ +.++..|+.     .....+..+|....  ...||+|+++
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            44578999999999999998764     34557999999 666666553     66778888888773  3359999998


Q ss_pred             chhccC-ChhH---------------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          260 LIFHDY-DDEV---------------CLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       260 ~vlh~~-~d~~---------------~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      --+... .++.               -..++..+.+.|+|   ||++.++-+
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p  244 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP  244 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence            554222 1111               12368999999999   898876544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.72  E-value=6e-05  Score=62.85  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=70.8

Q ss_pred             HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCCCCCceEEeCCCCC-C-CCCccEEEec
Q 043623          184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-S-IPSADAFLFK  259 (359)
Q Consensus       184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~-~~~~D~i~~~  259 (359)
                      ++..+.  ...+.+|||.|||+|.++..+.++.+. .+++++|+ +..+..   ..+..++.+|++. . ...||+++.+
T Consensus        11 m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---~~~~~~~~~~~~~~~~~~~fd~ii~n   85 (223)
T d2ih2a1          11 MVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---PPWAEGILADFLLWEPGEAFDLILGN   85 (223)
T ss_dssp             HHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---CTTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred             HHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---cccceeeeeehhccccccccceeccc
Confidence            344443  456789999999999999999887665 56999998 444333   3345777888877 3 3359999987


Q ss_pred             chhccCC--hh-------------------------HHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          260 LIFHDYD--DE-------------------------VCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       260 ~vlh~~~--d~-------------------------~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      -......  ..                         --..++.++.+.|+|   ||++.++-+
T Consensus        86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~p  145 (223)
T d2ih2a1          86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP  145 (223)
T ss_dssp             CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEEe
Confidence            5542210  00                         123567888899999   899876643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.71  E-value=1.9e-05  Score=64.33  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-----CCCccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-----IPSADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-----~~~~D~i~~  258 (359)
                      .+.+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++       .++++++.+|.++  .     ...||+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            5689999999999999999998654 7999998 666665543       5689999999875  1     124999987


Q ss_pred             cchhccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623          259 KLIFHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV  297 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~  297 (359)
                      -=-.+   .....++|..+.+  .|+|   +| ++|+|...
T Consensus       120 DPPY~---~~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~  153 (182)
T d2fhpa1         120 DPPYA---KQEIVSQLEKMLERQLLTN---EA-VIVCETDK  153 (182)
T ss_dssp             CCCGG---GCCHHHHHHHHHHTTCEEE---EE-EEEEEEET
T ss_pred             chhhh---hhHHHHHHHHHHHCCCCCC---CE-EEEEEcCC
Confidence            64322   2224566777755  5898   55 66677643

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00026  Score=61.15  Aligned_cols=89  Identities=22%  Similarity=0.330  Sum_probs=61.5

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~  252 (359)
                      ..+++...  ..+...|||||+|.|.++..|++..+  ++++++. +..++..++       .++++++.+|+.+ +++.
T Consensus        11 ~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~   86 (278)
T d1zq9a1          11 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   86 (278)
T ss_dssp             HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence            45555554  56778999999999999999999854  6777777 444444332       4689999999999 6666


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHH
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCRE  279 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~  279 (359)
                      ++.++ ++.-++.    ...++.++..
T Consensus        87 ~~~vV-~NLPY~I----ss~il~~~~~  108 (278)
T d1zq9a1          87 FDTCV-ANLPYQI----SSPFVFKLLL  108 (278)
T ss_dssp             CSEEE-EECCGGG----HHHHHHHHHH
T ss_pred             hhhhh-cchHHHH----HHHHHHHHHh
Confidence            55544 4444443    3455665544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.41  E-value=0.00025  Score=59.59  Aligned_cols=96  Identities=11%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCC-CCCCceEEeCCCCCC-----CC--CccEEEecc
Q 043623          194 GLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLP-ETDNLKFIAGDMNQS-----IP--SADAFLFKL  260 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~-~~~rv~~~~~d~~~~-----~~--~~D~i~~~~  260 (359)
                      ++++||+||++.|.-+..++..    .++.+++++|+ +....... ..+||+++.+|..++     ..  .+|.|+.-.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            3689999999999877655532    46789999998 33333322 278999999997652     11  378777654


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      . |....  +..-+ .....|+|   ||.++|-|..
T Consensus       160 ~-H~~~~--v~~~~-~~~~lLk~---GG~iIveD~i  188 (232)
T d2bm8a1         160 A-HANTF--NIMKW-AVDHLLEE---GDYFIIEDMI  188 (232)
T ss_dssp             S-CSSHH--HHHHH-HHHHTCCT---TCEEEECSCH
T ss_pred             C-cchHH--HHHHH-HHhcccCc---CCEEEEEcCC
Confidence            3 55322  23334 35678999   8877776653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00037  Score=56.22  Aligned_cols=106  Identities=13%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-C----------
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S----------  249 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~----------  249 (359)
                      .+|.++++ .+++..+|||+||+.|.++..+.+.. +..+++++|+.++    ...+++.++.+|+.+ .          
T Consensus        11 ~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             HHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence            45666665 35788999999999999999888754 5578999997432    236778999999986 2          


Q ss_pred             CCCccEEEecchhccCChh---------HHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          250 IPSADAFLFKLIFHDYDDE---------VCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       250 ~~~~D~i~~~~vlh~~~d~---------~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ...+|+|++-.......+.         -+...|.-+.+.|++   ||.+++=-+
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~K~F  137 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF  137 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEEEEe
Confidence            1139999887765433211         123456667789999   787766433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.30  E-value=0.00058  Score=57.25  Aligned_cols=106  Identities=9%  Similarity=0.050  Sum_probs=67.8

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-H--HHhcCCC---CCCceEEeCCCCC--CCCCc
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-H--VIADLPE---TDNLKFIAGDMNQ--SIPSA  253 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~--~i~~a~~---~~rv~~~~~d~~~--~~~~~  253 (359)
                      ..+.+++.  +.+..+|+|+|||.|.++..++.+.+..++.++++- .  ......+   .+-+++...+...  +...+
T Consensus        56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~  133 (257)
T d2p41a1          56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC  133 (257)
T ss_dssp             HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence            34555554  677789999999999999999988766677777761 1  0111111   2334665554333  22249


Q ss_pred             cEEEecchhccCC----hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          254 DAFLFKLIFHDYD----DEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       254 D~i~~~~vlh~~~----d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      |+|++-..-+.-+    .+...++|.-+.+.|+|   ||.+++
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv  173 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  173 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence            9999876543221    12244678888899999   887665

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=5.8e-05  Score=64.52  Aligned_cols=82  Identities=17%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC---
Q 043623          182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS---  252 (359)
Q Consensus       182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~---  252 (359)
                      ..+++...  ..++..|||||||+|.++..|++...  +++++|+ +..++..+.    .++++++.+|+.+ +++.   
T Consensus        11 ~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~   86 (252)
T d1qyra_          11 DSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccc
Confidence            45566555  56788999999999999999998753  6888888 555554432    5789999999997 4432   


Q ss_pred             ---ccEEEecchhccCCh
Q 043623          253 ---ADAFLFKLIFHDYDD  267 (359)
Q Consensus       253 ---~D~i~~~~vlh~~~d  267 (359)
                         --..+..+.-++.+-
T Consensus        87 ~~~~~~~vvgNlPY~Iss  104 (252)
T d1qyra_          87 KMGQPLRVFGNLPYNIST  104 (252)
T ss_dssp             HHTSCEEEEEECCTTTHH
T ss_pred             ccCCCeEEEecchHHHHH
Confidence               124566776666554

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.22  E-value=0.00073  Score=58.92  Aligned_cols=99  Identities=20%  Similarity=0.204  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCceEEeCCCCCCCC----------C-
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP---------ETDNLKFIAGDMNQSIP----------S-  252 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~---------~~~rv~~~~~d~~~~~~----------~-  252 (359)
                      .+...|+.+|||-=.....+ ...++++++-+|.|++++.-+         ...+..++..|+.+++.          + 
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            45678889999988877766 335788999999998876322         24566778888775321          1 


Q ss_pred             ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      .=++++-.++++++.+++.++|+.+.+...|   |+. ++.|..
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~-l~~d~~  206 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAVETS  206 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEEECC
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCE-EEEEec
Confidence            3466777889999999999999999999988   555 455544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.94  E-value=0.00061  Score=55.06  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC----C--CCCccEEEe
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ----S--IPSADAFLF  258 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~----~--~~~~D~i~~  258 (359)
                      .+.+|||+-||||.++.+.+.+... +++.+|. ..+++.+++        .....++..|..+    .  .+.||+|++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            3579999999999999999998765 8999998 555543332        3456666666543    1  224999977


Q ss_pred             cchhccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeecC
Q 043623          259 KLIFHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~~  298 (359)
                      -=-. ...  ...++|..+..  .|++    +.++|+|....
T Consensus       122 DPPY-~~~--~~~~~l~~l~~~~~L~~----~~liiiE~~~~  156 (183)
T d2ifta1         122 DPPF-HFN--LAEQAISLLCENNWLKP----NALIYVETEKD  156 (183)
T ss_dssp             CCCS-SSC--HHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred             chhH-hhh--hHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence            5432 222  24466777655  6888    45667676543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.48  E-value=0.0019  Score=59.20  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHCC-------------CCeEEEeec-hHHHhcCC--------CCCCceEEeCCCCCCC
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAFP-------------SIKCSVLEL-PHVIADLP--------ETDNLKFIAGDMNQSI  250 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~i~~a~--------~~~rv~~~~~d~~~~~  250 (359)
                      ....+|+|-.||+|.++..+.++..             .....++|. +.+...++        ...+..+..+|.+...
T Consensus       161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~  240 (425)
T d2okca1         161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  240 (425)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh
Confidence            4568999999999999998877532             234788888 55544333        1456678888988733


Q ss_pred             C--CccEEEecchhccCC---------------hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          251 P--SADAFLFKLIFHDYD---------------DEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       251 ~--~~D~i~~~~vlh~~~---------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      +  .||+|+++=-+....               ...-..++.++.+.|++   ||++.++=+
T Consensus       241 ~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p  299 (425)
T d2okca1         241 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  299 (425)
T ss_dssp             CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence            3  499999886552211               01123589999999999   898877644

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.026  Score=49.41  Aligned_cols=104  Identities=12%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC---------------------------CCCCceEEeCCC
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP---------------------------ETDNLKFIAGDM  246 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~---------------------------~~~rv~~~~~d~  246 (359)
                      +...|+-+|||.=.....+...+|+++++-+|.|++++.-+                           ..++.+.+..|+
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            45689999999999999998889999999999988865211                           056788899998


Q ss_pred             CC-CC----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC
Q 043623          247 NQ-SI----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK  301 (359)
Q Consensus       247 ~~-~~----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~  301 (359)
                      .+ ..          ++ .=++++-.+|.+++.+++.++|+.+.+.++.    +.+++.|++.+..+
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~p  238 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQP  238 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCST
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCCC
Confidence            86 21          11 3468888999999999999999999998865    88999999865443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0023  Score=57.09  Aligned_cols=84  Identities=11%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC-------CCccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI-------PSADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~-------~~~D~i~  257 (359)
                      ..+..+|||+-||+|.++..|++..  -+++++|. +++++.|++      ..+++|+.+|..+..       ..+|+|+
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            4567899999999999999998864  47999998 777777654      678999999987732       1379887


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCC
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVAS  283 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p  283 (359)
                      +-     -|..-+.+.++.+.+ ++|
T Consensus       288 lD-----PPR~G~~~~~~~l~~-~~~  307 (358)
T d1uwva2         288 LD-----PARAGAAGVMQQIIK-LEP  307 (358)
T ss_dssp             EC-----CCTTCCHHHHHHHHH-HCC
T ss_pred             eC-----CCCccHHHHHHHHHH-cCC
Confidence            65     232223344555554 356

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.002  Score=42.37  Aligned_cols=58  Identities=21%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCc-eeeccccCCCCCCCceEecCc
Q 043623           34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGF-FSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .--...|+..|.++++++|.++||+.+++   +.+-++|-+..|...|+ +..+.         +.|++.+
T Consensus         6 ~eR~~~Il~~L~~~~~~vs~~~La~~l~V---S~~TI~rdi~~L~~~G~~I~~~~---------gGY~L~~   64 (65)
T d1j5ya1           6 QERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVATP---------RGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEET---------TEEECCT
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEEeC---------CCEEeCC
Confidence            33445677778654478999999999999   68999999999999997 55543         6798864

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0017  Score=42.43  Aligned_cols=55  Identities=18%  Similarity=0.237  Sum_probs=43.5

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      ++.|+..|.+ ++.+|.+|||+.+|+   +...+++-++.|...|+......       +..|++.
T Consensus         7 ~~~iL~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~i~~L~~~G~~I~~~~-------g~GY~L~   61 (63)
T d1biaa1           7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-------GKGYSLP   61 (63)
T ss_dssp             HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-------TTEEECS
T ss_pred             HHHHHHHHHH-CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCcEEEeC-------CCeEEeC
Confidence            4557777865 478999999999999   68999999999999998444431       3468875

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.71  E-value=0.002  Score=45.82  Aligned_cols=53  Identities=9%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .+|.--.++.|+..|..  ++.++.|||+.+|+   ++..+.+-|+.|...|+|....
T Consensus        13 kaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~---s~~~vS~HL~~L~~~glv~~~r   65 (94)
T d1r1ua_          13 KALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR   65 (94)
T ss_dssp             HHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHHc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCceEEEE
Confidence            44555566777788876  79999999999999   6899999999999999999886

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=95.69  E-value=0.0025  Score=45.63  Aligned_cols=53  Identities=15%  Similarity=0.233  Sum_probs=44.9

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .+|.--.++.|+..|..  ++.++.+||+.+|+   ++..+.+.|+.|...|+|....
T Consensus        18 kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~i---s~stvS~HL~~L~~aglV~~~r   70 (98)
T d1r1ta_          18 AVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK   70 (98)
T ss_dssp             HHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence            34555566677777865  79999999999999   6899999999999999999876

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.016  Score=50.72  Aligned_cols=55  Identities=18%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCceEEeCCCCC
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP---ETDNLKFIAGDMNQ  248 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~---~~~rv~~~~~d~~~  248 (359)
                      ...+|||||.|.|.++..+++...--+++++|. +...+..+   ..++++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            457899999999999999998742237888988 44433332   36789999999874

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=95.38  E-value=0.0043  Score=41.41  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=39.6

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|+..|..+ +|+|..|||+.+|+   ++..+.++++.|...|++.+.+
T Consensus         9 ~~Il~~l~~~-g~~sr~eLa~~~gl---S~~Tv~~~l~~L~~~Glv~e~~   54 (71)
T d1z05a1           9 GRVYKLIDQK-GPISRIDLSKESEL---APASITKITRELIDAHLIHETT   54 (71)
T ss_dssp             HHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            3466677664 79999999999999   6899999999999999998764

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=95.27  E-value=0.015  Score=44.22  Aligned_cols=66  Identities=12%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      .++..|... +|.|..+||+.+++   ++..+.+.++.|...|++.+....+  |.=.-.+.+|+.|+.+..
T Consensus        39 ~iL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~l~~L~~~glv~r~~~~~--D~R~~~v~lT~~G~~~~~  104 (143)
T d1s3ja_          39 FVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTK--DRRVIDLSLTDEGDIKFE  104 (143)
T ss_dssp             HHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CTTSEEEEECHHHHHHHH
T ss_pred             HHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHhhhheeeeecC--CCCceEEEECHHHHHHHH
Confidence            456667654 68999999999999   6899999999999999999775211  000124888988875553

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.16  E-value=0.056  Score=46.83  Aligned_cols=103  Identities=7%  Similarity=0.048  Sum_probs=66.7

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCC----C--CCCceEEeCCCCC-C--CCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLP----E--TDNLKFIAGDMNQ-S--IPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~----~--~~rv~~~~~d~~~-~--~~~~D~i~~~~  260 (359)
                      ..++.+|||+.+|.|.=+..++.... +..+++.|. +.-+..++    .  ..++.+...|... +  ...||.|++--
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            45678999999999999999988764 457899998 43333322    1  5667777777665 2  22489987621


Q ss_pred             -------------hhccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          261 -------------IFHDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       261 -------------vlh~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                                   +...+..++.       .++|.++.+.|||   ||+|+-.-..+
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl  247 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL  247 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccC
Confidence                         1122222221       2578899999999   78766554443

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.06  E-value=0.0032  Score=45.13  Aligned_cols=67  Identities=22%  Similarity=0.340  Sum_probs=50.8

Q ss_pred             HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchh
Q 043623           35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKL  107 (359)
Q Consensus        35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~  107 (359)
                      -.++.|+..|... ++.|+.+||+.+++   ++..+.+.|+.|...|+++.....  .+.-.-.|++|+.|+.
T Consensus        16 p~r~~IL~~L~~~-~~~~~~eLa~~l~i---s~~~vs~~l~~L~~~glV~~~~~~--~d~r~~~~~LT~~G~~   82 (100)
T d1ub9a_          16 PVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI--ADRPRTVVEITDFGME   82 (100)
T ss_dssp             HHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC--SSSCEEEEEECHHHHH
T ss_pred             HHHHHHHHHhccC-CCeeHHHHHHHHhh---ccccccHHHHHHhhhceeEEEEcC--cCCccccccCCHHHHH
Confidence            3466777888553 78999999999999   689999999999999999977420  0001125999988763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.98  E-value=0.043  Score=42.78  Aligned_cols=82  Identities=16%  Similarity=0.128  Sum_probs=57.8

Q ss_pred             eEEEEcCCc-h-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCCCccEEEecchhccCChhHHHH
Q 043623          197 SLVEVGGGT-G-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVCLK  272 (359)
Q Consensus       197 ~vlDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~~  272 (359)
                      +|+=||||. | .++..+.+..+..+++++|. ++.++.+++...+.....+... .....|+|+++-     +......
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~   77 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE   77 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence            588899986 3 45566777777889999998 6777776654444433333333 223589998874     5566788


Q ss_pred             HHHHHHHhcCC
Q 043623          273 LLKNCREAVAS  283 (359)
Q Consensus       273 iL~~~~~~L~p  283 (359)
                      ++..+.+.+++
T Consensus        78 vl~~l~~~~~~   88 (171)
T d2g5ca2          78 IAKKLSYILSE   88 (171)
T ss_dssp             HHHHHHHHSCT
T ss_pred             hhhhhhccccc
Confidence            99999999988

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.96  E-value=0.0049  Score=44.85  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .+.+|.--.++.|+..|... ++.++.+||+.+|+   ++..+.+-|+.|...|+|.....     |-.-.|++++
T Consensus        24 ~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~---s~s~vS~HL~~L~~aGlv~~~r~-----G~~~~Y~l~~   90 (108)
T d1u2wa1          24 ILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-----GKLALYSLGD   90 (108)
T ss_dssp             HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred             HHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHcc---ChhHHHHHHHHHHHCCeeEEEEE-----CCEEEEEECH
Confidence            45667777788888888642 78999999999999   68999999999999999998862     1123577765

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.0076  Score=38.99  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=39.2

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|+..|.+  +|+|..|||+.+|+   +...+.++++.|...|++.+.+
T Consensus         3 ~Il~~i~~--~pisr~eLa~~~gl---s~~TVs~~v~~L~~~GlV~e~~   46 (62)
T d2hoea1           3 RILKRIMK--SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK   46 (62)
T ss_dssp             CSHHHHHH--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHH--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC
Confidence            46677765  79999999999999   6899999999999999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.018  Score=45.12  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=57.2

Q ss_pred             cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe-CCCCC---C-CCCccEEEecch-hc
Q 043623          192 FDGLSSLVEVGGG-TGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA-GDMNQ---S-IPSADAFLFKLI-FH  263 (359)
Q Consensus       192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~-~d~~~---~-~~~~D~i~~~~v-lh  263 (359)
                      .+++.+||-+|+| .|.++..+++.. +++++++|. ++-++.+++..--.++. .+..+   . ...+|+++..-. -+
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~  103 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT  103 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence            6788999999988 677777888764 689999997 55555554411012221 11111   1 224898776422 11


Q ss_pred             cCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ...       +..+.+.|+|   +|+++++-.
T Consensus       104 ~~~-------~~~~~~~l~~---~G~iv~~G~  125 (168)
T d1piwa2         104 DID-------FNIMPKAMKV---GGRIVSISI  125 (168)
T ss_dssp             TCC-------TTTGGGGEEE---EEEEEECCC
T ss_pred             cch-------HHHHHHHhhc---cceEEEecc
Confidence            111       3456778999   899998763

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.012  Score=39.08  Aligned_cols=47  Identities=11%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +..|+..|..+ +|.|..+||+.+|+   +...+.++++.|...|+|.+.+
T Consensus         7 ~~~Il~~i~~~-g~~sr~eLa~~~gL---S~~Tvs~iv~~L~~~glv~e~g   53 (70)
T d1z6ra1           7 AGAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE   53 (70)
T ss_dssp             HHHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence            34467777765 89999999999999   6899999999999999998764

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=94.44  E-value=0.012  Score=44.60  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS  103 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~  103 (359)
                      .+.|.++||+.+++   ++..++++|+.|...|+|.....       .|.|++..
T Consensus        22 ~~vss~~IA~~~~i---~~~~l~kil~~L~~aGlv~S~rG-------~GG~~L~~   66 (138)
T d1ylfa1          22 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-------PGGAGLLK   66 (138)
T ss_dssp             GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred             CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeecC-------CCCceecC
Confidence            68999999999999   57999999999999999998862       57787763

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.42  E-value=0.013  Score=47.04  Aligned_cols=53  Identities=11%  Similarity=0.178  Sum_probs=45.3

Q ss_pred             HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      ..+|.--.++.|+..|..  +|.|+.|||+.+|+   ++..+.+.|+.|...|+|...
T Consensus        13 ~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~---s~~~v~~hl~~L~~~glv~~~   65 (190)
T d1ulya_          13 IKVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK   65 (190)
T ss_dssp             HHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence            445555667788888875  89999999999999   689999999999999999755

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.25  E-value=0.017  Score=44.09  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=50.4

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++.++..|...+++.|..+||+.+++   +...+.++++.|...|+|.+.....  |.-.-.+.+|+.|+.+.
T Consensus        35 ~q~~vL~~L~~~~g~~t~~~La~~~~~---~~~~vs~~i~~L~~~glv~r~~~~~--DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          35 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQ--DGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeeeCcc--chhHHHhccCHHHHHHH
Confidence            345556666544578999999999999   6899999999999999999875210  00113588898887554

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.16  E-value=0.0064  Score=44.21  Aligned_cols=37  Identities=22%  Similarity=0.395  Sum_probs=34.4

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++|.|..+||+.+++   ++..+.+.|+.|...|+|.+..
T Consensus        34 ~~~~t~~eLa~~~~i---~~~tvs~~l~~L~~~GlV~r~~   70 (109)
T d2d1ha1          34 EKPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             CSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCHHHHHHHHCc---cHhHHHHHHHHHHHCCCEEEee
Confidence            478999999999999   6899999999999999999875

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.13  E-value=0.015  Score=40.52  Aligned_cols=48  Identities=15%  Similarity=0.189  Sum_probs=42.4

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.+...|...+++   +...+...|..|...|++...+         +.|.+|+.|.-+.
T Consensus        18 g~~kT~i~~~aNL---s~~~~~kyl~~L~~~GLI~~~~---------~~Y~iT~kG~~~L   65 (90)
T d1r7ja_          18 GSPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG---------KQYMLTKKGEELL   65 (90)
T ss_dssp             CBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred             CCCccHHHHHcCC---CHHHHHHHHHHHHHCCCeeecC---------CEEEECccHHHHH
Confidence            4678999999999   6899999999999999998774         7999999998443

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.03  E-value=0.016  Score=46.74  Aligned_cols=65  Identities=17%  Similarity=0.288  Sum_probs=47.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCccch
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSASK  106 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~~~  106 (359)
                      .++.|+..|..  +|.|+.|||+.+|+   ++..+++.|+.|...|+|+...... ..| -...|+++..+.
T Consensus        16 ~R~~Il~~L~~--~~~~~~ela~~l~~---s~~~v~~HL~~L~~~Glv~~~~~~~-~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          16 TRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKI-PRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCB-TTBCCCEEEEECTTEE
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeec-CCCCceEEEEecccce
Confidence            44556666765  79999999999999   6899999999999999998653211 111 112688877654

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.02  E-value=0.046  Score=41.29  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++-++..|... ++.|..+||+.+++   +...+.+.++.|+..|+|++....  .|.-.-.+.+|+.|..+.
T Consensus        37 ~q~~vL~~l~~~-~~~t~~~la~~l~~---~~~~vsr~l~~L~~~G~v~r~~~~--~D~R~~~l~lT~~G~~~~  104 (141)
T d1lnwa_          37 PDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNP--SDQRSFQLFLTDEGLAIH  104 (141)
T ss_dssp             HHHHHHHHHHSS-TTCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS--SSSSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHCc---cHhHHHHHHHHHHHhhceeeeccC--CCCcchhhccCHHHHHHH
Confidence            344556666554 67999999999999   689999999999999999988521  111123478888876443

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.99  E-value=0.028  Score=41.85  Aligned_cols=36  Identities=11%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +++|.++||+.+++   ++..++++|+.|...|+|.-.+
T Consensus        17 ~~~ss~~IA~~~~~---~~~~v~kIl~~L~~aglV~s~r   52 (127)
T d1xd7a_          17 EKTSSEIIADSVNT---NPVVVRRMISLLKKADILTSRA   52 (127)
T ss_dssp             SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS
T ss_pred             CCCCHHHHHHHhCc---CHHHHHHHHHHHHHhCcccccC
Confidence            68999999999999   5799999999999999999775

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.019  Score=53.72  Aligned_cols=99  Identities=14%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHC----CC--------------CeEEEeec-hHHHhcCCC-----------CCCceEE
Q 043623          193 DGLSSLVEVGGGTGSFARIISEAF----PS--------------IKCSVLEL-PHVIADLPE-----------TDNLKFI  242 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~i~~a~~-----------~~rv~~~  242 (359)
                      ....+|+|-.||+|.++....+..    ..              ..+.++|+ +.+...++.           ...-.+.
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~  242 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  242 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence            446799999999999998876542    11              24788888 555443321           1122345


Q ss_pred             eCCCCC-C---CCCccEEEecchhcc-C------------ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          243 AGDMNQ-S---IPSADAFLFKLIFHD-Y------------DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       243 ~~d~~~-~---~~~~D~i~~~~vlh~-~------------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      .++.+. +   .+.||+|+++=-+-. +            ++.+ ..++.++.+.|+|   ||++.++=+
T Consensus       243 ~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~---gGr~aiIlP  308 (524)
T d2ar0a1         243 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHP---GGRAAVVVP  308 (524)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             hhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccc---cCcEEEEEe
Confidence            566654 2   235999988754311 1            1112 3589999999999   899877644

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.98  E-value=1.3  Score=38.57  Aligned_cols=150  Identities=15%  Similarity=0.162  Sum_probs=89.6

Q ss_pred             CCCCeEEEEcCCchHHHH-------HHHH-H--------CCCCeEEEeechH-----HHhcCCC---CCC---ceEEeCC
Q 043623          193 DGLSSLVEVGGGTGSFAR-------IISE-A--------FPSIKCSVLELPH-----VIADLPE---TDN---LKFIAGD  245 (359)
Q Consensus       193 ~~~~~vlDvG~G~G~~~~-------~l~~-~--------~p~~~~~~~D~~~-----~i~~a~~---~~r---v~~~~~d  245 (359)
                      +..-+|+|+||.+|..+.       ...+ .        -|..++..=|+|.     .......   ..+   +.-+.|.
T Consensus        50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence            344679999999998873       2221 1        3567788888852     2333322   121   3347789


Q ss_pred             CCC-CCC--CccEEEecchhccCCh-------------------h------------HHHHHHHHHHHhcCCCCCCceEE
Q 043623          246 MNQ-SIP--SADAFLFKLIFHDYDD-------------------E------------VCLKLLKNCREAVASSDGREKVI  291 (359)
Q Consensus       246 ~~~-~~~--~~D~i~~~~vlh~~~d-------------------~------------~~~~iL~~~~~~L~p~~~gG~ll  291 (359)
                      |.. -+|  +.++++++..||-++.                   +            +...+|+.=.+-|.|   ||+++
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mv  206 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV  206 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred             hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEE
Confidence            988 566  4899999999986541                   1            233477777778999   99999


Q ss_pred             EEeeecCCCCCCc----hH-H-HHHHHhhhhhhhhcC----------CcccCHHHHHHHHHhcC-CceeeE
Q 043623          292 IVDIVVNEKKDKP----EI-T-EAKLLYDALMMTCVP----------GIERSEKEWERLFFDAG-FTSYKI  345 (359)
Q Consensus       292 i~e~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~~----------g~~~t~~e~~~ll~~aG-f~~~~~  345 (359)
                      ++-...++.....    .. . ...++.++.......          --.++.+|+++.+++.| |++.++
T Consensus       207 l~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~  277 (359)
T d1m6ex_         207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             EEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence            9887776543221    00 0 001111211111111          12368999999999876 555444

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.96  E-value=0.03  Score=49.94  Aligned_cols=93  Identities=8%  Similarity=0.059  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------------CCCceEEeCCCCC---
Q 043623          194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------------------TDNLKFIAGDMNQ---  248 (359)
Q Consensus       194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------------------~~rv~~~~~d~~~---  248 (359)
                      ++.+|||..||+|..++..++..+.-+++..|+ +.+++.+++                     ...+.+...|...   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            468999999999999999998887778999999 677665542                     1234555666543   


Q ss_pred             CCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          249 SIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       249 ~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                      ..+ .||+|.+--    +.-.  ..+|..+.++++.   ||.|.|.-+
T Consensus       125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~---~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKR---RGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCCc--HHHHHHHHHHhcc---CCEEEEEec
Confidence            122 399887764    3322  4689999999998   788877644

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=93.71  E-value=0.018  Score=39.78  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=43.2

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +++|..+||+.+++   ++..+.++|+.|...|++.+...     +-.-.+.+|+.|..+.
T Consensus        20 ~~lt~~eLa~~l~i---~~~~vs~~l~~Le~~GlV~r~~D-----~R~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          20 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT-----KRGQILNITEKGLDVL   72 (85)
T ss_dssp             EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeecc-----cccccceECHHHHHHH
Confidence            68999999999999   68999999999999999998741     1123578898877443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.15  Score=43.33  Aligned_cols=104  Identities=10%  Similarity=0.069  Sum_probs=66.4

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc----CCC--CCCceEEeCCCCC---CCC-CccEEEec-
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD----LPE--TDNLKFIAGDMNQ---SIP-SADAFLFK-  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~----a~~--~~rv~~~~~d~~~---~~~-~~D~i~~~-  259 (359)
                      ..++.+|||+.+|.|.=+..++....+.++++.|. +.-+..    ++.  ...+..+..|...   ..+ .||.|++- 
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            45678999999999999999999888889999997 322222    211  3344444444443   122 48998752 


Q ss_pred             -----chh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          260 -----LIF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       260 -----~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                           .++       ..++..+.       .++|.++.+.|+|   ||+|+-.-..+.
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~~  234 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL  234 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecCc
Confidence                 223       22332211       3578888899999   777665544433

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=93.26  E-value=0.017  Score=43.69  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++-++..|..+ ++.|..+||+.+++   +...+.+.++.|...|++.+....+  |.-.-...+|+.|..+.
T Consensus        33 ~q~~iL~~l~~~-~~~t~~~La~~l~i---~~~~vs~~v~~L~~~gli~r~~~~~--D~R~~~l~lT~~G~~~~  100 (140)
T d2etha1          33 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPV--DRRTYRVVLTEKGKEIF  100 (140)
T ss_dssp             HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTT--TSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeeeccc--ccchhhhhcCHHHHHHH
Confidence            345566777665 68999999999999   6899999999999999999885211  00113688898887554

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=93.14  E-value=0.056  Score=34.90  Aligned_cols=36  Identities=14%  Similarity=0.376  Sum_probs=34.1

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|-++.|||+.+|+   ++..++.+|+.|...|.+.+-.
T Consensus        22 ~PP~vrdl~~~l~~---~e~~~~~lL~~l~~~G~lvkI~   57 (64)
T d1lvaa3          22 QPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN   57 (64)
T ss_dssp             SCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS
T ss_pred             CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence            79999999999999   6899999999999999999886

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.84  E-value=0.13  Score=40.97  Aligned_cols=105  Identities=17%  Similarity=0.121  Sum_probs=66.1

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe---CCCCC------CCCCccEEEecc
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA---GDMNQ------SIPSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~---~d~~~------~~~~~D~i~~~~  260 (359)
                      .+++.+||.+|||. |.++..+++.....++++.|. ++-++.+++..--.++.   .|+.+      .-..+|+++-+-
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            67889999999998 667778888877778999998 66666655422111211   11111      011478887543


Q ss_pred             hh-------ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          261 IF-------HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       261 vl-------h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      -.       +........+.|+.+.+.++|   ||+++++-...++
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~~  145 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVTE  145 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCSC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCCC
Confidence            21       111111123579999999999   9999988754443

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=92.54  E-value=0.062  Score=37.71  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCc
Q 043623           19 LYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENE   97 (359)
Q Consensus        19 l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~   97 (359)
                      .++++.+-|...+|..         |..  |+....||.+.+ |+   ++..|.+=|+.|...|++.+......+  -.-
T Consensus         4 ~l~ilg~kW~l~Il~~---------L~~--g~~rF~el~~~l~gi---s~~~Ls~rLk~Le~~glv~r~~~~~~p--~~v   67 (95)
T d2hzta1           4 TLEVIGGKWKCVILCH---------LTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVP--PKV   67 (95)
T ss_dssp             HHHHHCSTTHHHHHHH---------HTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSS--CEE
T ss_pred             HHHHHcCCCHHHHHHH---------HHc--CCCCHHHHHHHhhcC---ChhHHHHHHHHHHHhHHHhheeccccc--cch
Confidence            4455556666665554         222  789999999997 89   689999999999999999987421000  012


Q ss_pred             eEecCccchhhh
Q 043623           98 AYALTSASKLLL  109 (359)
Q Consensus        98 ~~~~t~~~~~l~  109 (359)
                      .|++|+.|..|.
T Consensus        68 eY~LT~~G~~L~   79 (95)
T d2hzta1          68 EYELSEYGRSLE   79 (95)
T ss_dssp             EEEECTTGGGGH
T ss_pred             hhhhhhhHHHHH
Confidence            499999988665

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.42  E-value=0.024  Score=41.01  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=37.0

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++..|... ++.|+.+||+.+|+   +...+.+.|+.|...|+|.+..
T Consensus        25 v~~~L~~~-g~~t~~eia~~~~i---~~~~v~~~l~~L~~~GlV~r~~   68 (109)
T d1sfxa_          25 IYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHhc-CCCCHHHHHHHhCC---CcchHHHHHHHHHhCCCEEEEe
Confidence            44455443 79999999999999   6899999999999999998763

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=92.40  E-value=0.09  Score=34.49  Aligned_cols=55  Identities=20%  Similarity=0.371  Sum_probs=45.8

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      |+|-|...|+++.++|   -..|||.|..|.+.|+++..=    +++|.+.=++|+.++.|.
T Consensus        22 g~~WSLaklsKra~~P---MS~LRR~LTqL~~aGl~~t~~----~edG~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          22 ATPWSLPKIAKRAQLP---MSVLRRVLTQLQAAGLADVSV----EADGRGHASLTQEGAALA   76 (81)
T ss_dssp             CCCCBHHHHHHHHTCC---HHHHHHHHHHHHHTTSEEEEE----CTTSCEEEEECHHHHHHH
T ss_pred             CCCccHHHHHhhcCCc---HHHHHHHHHHHhhcCceeeee----ccCCcceeeccHHHHHHH
Confidence            4799999999999995   689999999999999998763    233567888998887665

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.34  E-value=0.19  Score=38.74  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             cCCCCeEEEEcC--CchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC--------CCC-CccEEEec
Q 043623          192 FDGLSSLVEVGG--GTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ--------SIP-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~--------~~~-~~D~i~~~  259 (359)
                      ..++.+||-+||  |.|.++..+++.....++++.|. ++-.+.+++..--.++..+-.+        ..+ .+|+++-+
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~  104 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL  104 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence            677889999996  46677788888776678999997 5444444431111222222111        012 38888765


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHH
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFF  336 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~  336 (359)
                      ..     .   ...++.+.+.++|   ||+++++-....+. ..+   .....+  .-....|...++.+++.++++
T Consensus       105 ~g-----~---~~~~~~a~~~l~~---~G~iv~~G~~~~~~-~~~---~~~~~~--k~i~i~Gs~~~~~~d~~~~l~  164 (170)
T d1jvba2         105 NN-----S---EKTLSVYPKALAK---QGKYVMVGLFGADL-HYH---APLITL--SEIQFVGSLVGNQSDFLGIMR  164 (170)
T ss_dssp             CC-----C---HHHHTTGGGGEEE---EEEEEECCSSCCCC-CCC---HHHHHH--HTCEEEECCSCCHHHHHHHHH
T ss_pred             cc-----c---chHHHhhhhhccc---CCEEEEeccccCcc-ccC---HHHHHh--CCcEEEEEecCCHHHHHHHHH
Confidence            32     2   2456777889999   99999886543322 222   111111  111123444457777776664

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=92.33  E-value=0.052  Score=40.53  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +.++..|..+ +++.|..+||+.+++   +...+.++++.|...|++.+....+  |.-.-.+.+|+.|+.+..
T Consensus        32 ~~vL~~l~~~~~~~it~~ela~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~--D~R~~~i~lT~~G~~~~~  100 (135)
T d3broa1          32 MTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGK--DSRQKCLKLTKKANKLET  100 (135)
T ss_dssp             HHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS--CTTSEEEEECHHHHTTHH
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHCc---CHhHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhcccHHHHHHHH
Confidence            3444455443 257999999999999   6899999999999999999875211  001136889998775543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.28  E-value=0.26  Score=38.45  Aligned_cols=93  Identities=12%  Similarity=0.013  Sum_probs=61.0

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-C---------CCCccEEEec
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-S---------IPSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~---------~~~~D~i~~~  259 (359)
                      .+++.+||-+|||. |.++..+++..--.++++.|. ++-.+.+++-.-..++...-.+ .         -..+|+++-+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            67789999999988 888889999876667888898 4445555442222222111111 0         1248888765


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCC-ceEEEEee
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGR-EKVIIVDI  295 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~g-G~lli~e~  295 (359)
                      -     ..+   ..+..+.+.++|   | |+++++-.
T Consensus       106 ~-----G~~---~~~~~a~~~~~~---g~G~~v~vG~  131 (174)
T d1e3ia2         106 A-----GTA---QTLKAAVDCTVL---GWGSCTVVGA  131 (174)
T ss_dssp             S-----CCH---HHHHHHHHTBCT---TTCEEEECCC
T ss_pred             c-----ccc---hHHHHHHHHhhc---CCeEEEecCC
Confidence            3     222   458889999998   6 89988764

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.21  E-value=0.052  Score=40.68  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +-.|..++++.|..+||+.+++   ++..+.++++.|...|++.+....  .|.=.-.+.+|+.|+.+.
T Consensus        34 L~~l~~~~~~~t~~~la~~~~~---~~~~vs~~v~~L~~~gli~r~~~~--~D~R~~~i~lT~~G~~~~   97 (137)
T d2fbha1          34 LLHLARHRDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA--EDRRAKHIVLTPKADVLI   97 (137)
T ss_dssp             HHHHHHCSSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB--TTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHcCCccccCCC--CCCCchhhhcCHHHHHHH
Confidence            3445433456899999999999   689999999999999999988521  001012578888877554

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.14  E-value=0.095  Score=33.61  Aligned_cols=37  Identities=8%  Similarity=0.205  Sum_probs=34.3

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +++++..+||+.+|+   .+..+.+.++-|...|++...+
T Consensus        21 ~~~v~~~~iA~~L~v---s~~SVt~mvkrL~~~Glv~~~~   57 (63)
T d2isya1          21 GVTPLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG   57 (63)
T ss_dssp             TCCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred             CCCCcHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcC
Confidence            478999999999999   6799999999999999999886

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.01  E-value=0.038  Score=33.48  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=44.8

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYAL  101 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~  101 (359)
                      |-.|+..|.++|+|+-+.+|++++++|   ..-+.++|..|...+=++..+        ++.|.+
T Consensus         3 EQkILQVL~dagspvk~~ql~k~cqVp---kk~lNqVL~rlkke~kVsl~~--------patW~l   56 (57)
T d1j75a_           3 EQKILQVLSDDGGPVKIGQLVKKCQVP---KKTLNQVLYRLKKEDRVSSPE--------PATWSI   56 (57)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCSC---HHHHHHHHHHHHHTTSEEEEE--------TTEEEE
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHCCC---HHHHHHHHHHHHhccccccCC--------CccccC
Confidence            344566676668999999999999995   689999999999999888886        577775

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.01  E-value=0.1  Score=37.92  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           15 AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        15 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      |....++++.+-|...+|..         |..  |+....||.+.+ |+   +++.|.+=|+.|...|+|.+......+ 
T Consensus        13 pv~~~l~~ig~kW~l~Il~~---------L~~--g~~RF~el~~~l~gi---s~~~Ls~rL~~Le~~glv~R~~~~~~p-   77 (114)
T d1yyva1          13 PSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRKMGGV---SEKMLAQSLQALEQDGFLNRVSYPVVP-   77 (114)
T ss_dssp             THHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSS-
T ss_pred             CHHHHHHHHcCCCHHHHHHH---------Hhc--CCCCHHHHHHHcccc---chhHHHHHHHHHHHHHHHhhcccCCCC-
Confidence            56678888899998887764         222  789999999998 78   678999999999999999988521000 


Q ss_pred             CCCceEecCccchhhhc
Q 043623           94 EENEAYALTSASKLLLK  110 (359)
Q Consensus        94 ~~~~~~~~t~~~~~l~~  110 (359)
                       -.-.|.+|+.|+.|.+
T Consensus        78 -~~veY~LT~~G~~L~~   93 (114)
T d1yyva1          78 -PHVEYSLTPLGEQVSD   93 (114)
T ss_dssp             -CEEEEEECHHHHHHHH
T ss_pred             -chhHhHhhHhHHHHHH
Confidence             0135999999886663

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.61  E-value=0.036  Score=42.28  Aligned_cols=45  Identities=16%  Similarity=0.382  Sum_probs=37.8

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |+..|..+++|+|+.+||+.+|+   +...+.+.|+.|...|+|.+..
T Consensus        31 i~~~L~~~~~plt~~ela~~l~v---sk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          31 VYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             HHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHhCCCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCEEEEE
Confidence            44455434578999999999999   6899999999999999998774

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=91.48  E-value=0.035  Score=41.88  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      +-++..|..+ ++.|..+||+.+++   +...+.+.++.|...|++.+....  .|.-.-.+.+|+.|+.+..
T Consensus        33 ~~iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~gli~r~~~~--~D~R~~~i~LT~~G~~~~~   99 (139)
T d2a61a1          33 FDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDP--ADRRAYFLVITRKGEEVIE   99 (139)
T ss_dssp             HHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHhCC---CcccchHHHHHHHhcCeeeeeecc--CCCCeEEEEECHHHHHHHH
Confidence            3344455444 68999999999999   689999999999999999987521  0000135888988875553

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.45  E-value=1.1  Score=34.07  Aligned_cols=92  Identities=11%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C-----------CC-CccE
Q 043623          192 FDGLSSLVEVGGG-TGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S-----------IP-SADA  255 (359)
Q Consensus       192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~-----------~~-~~D~  255 (359)
                      .+++.+||-+||| .|.++..+++.. +.+++++|. ++-.+.+++ .....+. .+... .           .+ .+|+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~-~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLV-VDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEE-CCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEe-ccccccccchhhhhhhcccccCCce
Confidence            6678899999987 677777788775 579999998 555555554 1112222 22111 1           12 3788


Q ss_pred             EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ++-+-     ..+   ..+..+.+.++|   +|+++++-..
T Consensus       102 vid~~-----g~~---~~~~~a~~~~~~---~G~iv~~G~~  131 (170)
T d1e3ja2         102 TIDCS-----GNE---KCITIGINITRT---GGTLMLVGMG  131 (170)
T ss_dssp             EEECS-----CCH---HHHHHHHHHSCT---TCEEEECSCC
T ss_pred             eeecC-----CCh---HHHHHHHHHHhc---CCceEEEecC
Confidence            87553     222   457788889999   9999988754

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=91.18  E-value=0.051  Score=34.74  Aligned_cols=36  Identities=14%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++++..+||+.+|+   ++..+...++-|...|+++...
T Consensus        20 ~~v~~~~iA~~L~v---s~~SVs~mikrL~~~GlV~~~~   55 (61)
T d2ev0a1          20 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK   55 (61)
T ss_dssp             SSCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred             CCccHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcc
Confidence            78999999999999   6799999999999999999885

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.05  E-value=0.054  Score=40.58  Aligned_cols=67  Identities=12%  Similarity=0.291  Sum_probs=49.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|... ++.|..+||+.+++   +...+.++++.|+..|++.+....+  |.-.-.+.+|+.|..+.
T Consensus        36 q~~vL~~i~~~-~~~t~~~la~~l~~---~~~~~s~~l~~L~~~Gli~r~~~~~--D~R~~~l~lT~~G~~~~  102 (136)
T d2bv6a1          36 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEV--DQREVFIHLTDKSETIR  102 (136)
T ss_dssp             HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSS--STTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEEeecCC--cccchhhccCHHHHHHH
Confidence            34555667654 68999999999999   5789999999999999999875211  11112578888887444

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.055  Score=40.67  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.++..|..+ ++.|..+||+.+++   ++..+.+++..|...|++++....+  |+-.-.+++|+.|+.+.
T Consensus        36 q~~vL~~l~~~-~~~t~~ela~~~~i---~~~~vs~~v~~L~~~glv~r~~~~~--D~R~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPN--DKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTT--CSSCEEEEECHHHHHHH
T ss_pred             HHHHHHhHHhC-cCCCHHHHHHHHCC---CHhHHHHHHHHHhhCCCEEEeeccC--CCCeeEEEECHHHHHHH
Confidence            34445555444 68999999999999   6899999999999999999875210  00112688898887554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.78  E-value=0.26  Score=37.77  Aligned_cols=92  Identities=10%  Similarity=0.090  Sum_probs=56.0

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchh
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vl  262 (359)
                      .+++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++..-..++..+-.+.       ...+|.++.... 
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~-  102 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV-  102 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence            66788899999765 56666777766 579999998 55556555422222332221111       123444443321 


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                         .    ...+..+.+.|+|   +|+++++-.
T Consensus       103 ---~----~~~~~~~~~~l~~---~G~iv~~G~  125 (166)
T d1llua2         103 ---S----NSAFGQAIGMARR---GGTIALVGL  125 (166)
T ss_dssp             ---C----HHHHHHHHTTEEE---EEEEEECCC
T ss_pred             ---c----chHHHHHHHHhcC---CcEEEEEEe
Confidence               1    1347788899999   999988753

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.71  E-value=0.16  Score=36.36  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCC
Q 043623           13 FQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNS   91 (359)
Q Consensus        13 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~   91 (359)
                      .-+....++.+.+-|...+|...         ..  |+....||.+.+ |+   ++.-|.+=|+.|...|+|.+......
T Consensus         6 ~c~i~~al~iig~kW~~~Il~~L---------~~--g~~RF~el~~~l~gI---S~~~Ls~rLk~L~~~glv~R~~~~~~   71 (108)
T d1z7ua1           6 QTSINLALSTINGKWKLSLMDEL---------FQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNEL   71 (108)
T ss_dssp             HHHHHHHHHTTCSTTHHHHHHHH---------HH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHH---------Hc--CCCCHHHHHHHCcCC---ChhHHHHHHHHHHHCCcceeeccCCC
Confidence            34566777888888888777643         22  689999999997 78   68999999999999999998742000


Q ss_pred             CCCCCceEecCccchhhhc
Q 043623           92 REEENEAYALTSASKLLLK  110 (359)
Q Consensus        92 ~~~~~~~~~~t~~~~~l~~  110 (359)
                      +  -.-.|.+|+.|..|.+
T Consensus        72 p--~~veY~LT~~G~~L~p   88 (108)
T d1z7ua1          72 P--PRVEYTLTPEGYALYD   88 (108)
T ss_dssp             S--CEEEEEECHHHHHHHH
T ss_pred             c--ceehhhhchhHHHHHH
Confidence            0  0124999999886663

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=0.27  Score=37.83  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=56.3

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC----CCCCccEEEecchhccC
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ----SIPSADAFLFKLIFHDY  265 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~----~~~~~D~i~~~~vlh~~  265 (359)
                      .+++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++..--.++...-..    ....+|+++-.-.    
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g----  102 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA----  102 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee----
Confidence            67889999999764 77888888876 577788886 4444444431111222111111    1224898876532    


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          266 DDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                       .+   ..+....+.++|   +|+++++-.
T Consensus       103 -~~---~~~~~~~~~l~~---~G~iv~~G~  125 (168)
T d1uufa2         103 -AP---HNLDDFTTLLKR---DGTMTLVGA  125 (168)
T ss_dssp             -SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred             -cc---hhHHHHHHHHhc---CCEEEEecc
Confidence             11   226677788999   899998754

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.14  Score=31.67  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=38.0

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++|..|.. +...|+.+||.+++++   .+.+.++|-.|...|.+.+.+
T Consensus         6 ~~l~~lg~-~~~~tA~~LA~kl~vp---Kk~iNr~LYsL~~kgkl~k~~   50 (59)
T d2gxba1           6 KFLEELGE-GKATTAHDLSGKLGTP---KKEINRVLYSLAKKGKLQKEA   50 (59)
T ss_dssp             HHHHHHCT-TCCBCHHHHHHHHTCC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHhcCC-ccchhHHHHHHHhCCc---HHHHHHHHHHHHHccchhhcC
Confidence            34555654 4789999999999995   689999999999999999886

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=1.5  Score=33.38  Aligned_cols=95  Identities=11%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             cCCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC----------CC-CccEEEe
Q 043623          192 FDGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS----------IP-SADAFLF  258 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~----------~~-~~D~i~~  258 (359)
                      .+++.+|+-+|+|.. .++..+++...-.++++.|. ++-++.+++..--.++..+-.++          .+ .+|+++-
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            567789999998765 55556666655448999998 66666555421112222211110          11 3788776


Q ss_pred             cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623          259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV  297 (359)
Q Consensus       259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~  297 (359)
                      +-     ..+   ..++.+.+.+++   ||+++++-...
T Consensus       104 ~~-----G~~---~~~~~a~~~~~~---gG~iv~~G~~~  131 (171)
T d1pl8a2         104 CT-----GAE---ASIQAGIYATRS---GGTLVLVGLGS  131 (171)
T ss_dssp             CS-----CCH---HHHHHHHHHSCT---TCEEEECSCCC
T ss_pred             cc-----CCc---hhHHHHHHHhcC---CCEEEEEecCC
Confidence            54     222   458888899999   99999987543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.02  E-value=0.19  Score=39.29  Aligned_cols=96  Identities=17%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeC---CCC-------C-CCC-CccEEE
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAG---DMN-------Q-SIP-SADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~---d~~-------~-~~~-~~D~i~  257 (359)
                      .+++.+||-+|+|. |.++..+++..---+++++|. ++-.+.+++..--.++..   |..       + ..+ ++|+|+
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            56778999999874 788888998764337899997 555555543111112211   110       1 111 389887


Q ss_pred             ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623          258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN  298 (359)
Q Consensus       258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~  298 (359)
                      -.-     ..+   ..++.+.+.|+|   ||+++++-...+
T Consensus       106 d~v-----G~~---~~~~~a~~~l~~---~G~iv~~G~~~~  135 (182)
T d1vj0a2         106 EAT-----GDS---RALLEGSELLRR---GGFYSVAGVAVP  135 (182)
T ss_dssp             ECS-----SCT---THHHHHHHHEEE---EEEEEECCCCSC
T ss_pred             ecC-----Cch---hHHHHHHHHhcC---CCEEEEEeecCC
Confidence            442     112   347788889999   999988875433

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.91  E-value=0.081  Score=39.70  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++..|...+++.|..+||+.+++   +...+.++++.|...|++.+....+  |.-.-.+.+|+.|..+.
T Consensus        36 ~L~~l~~~~~~~t~~~la~~l~i---~~~~vs~~l~~L~~~glI~~~~~~~--D~R~~~l~lT~~G~~~~  100 (140)
T d3deua1          36 TLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCAS--DRRAKRIKLTEKAEPLI  100 (140)
T ss_dssp             HHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred             HHHHHHHcCCCccHHHHHHHHCC---CHhHHHHHHHHHHhCCCEEecccCC--CCCceeeEECHHHHHHH
Confidence            44445433357999999999999   6899999999999999999775210  00012588999887555

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=89.84  E-value=0.082  Score=37.57  Aligned_cols=79  Identities=14%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623           15 AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE   93 (359)
Q Consensus        15 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~   93 (359)
                      +....++++.+-|...+|...         ..  |+....||.+.+ |+   ++..|.+=|+.|.+.|+|.+......+ 
T Consensus         9 pv~~~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gI---s~~~Ls~rLkeL~~~glv~r~~~~~~p-   73 (102)
T d2fswa1           9 PVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP-   73 (102)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS-
T ss_pred             CHHHHHHHHcCCCHHHHHHHH---------cc--CCCCHHHHHhhCccc---chhHHHHHHHHHHHCCceeecccCCCC-
Confidence            566788888888888776652         22  689999999997 89   689999999999999999987421000 


Q ss_pred             CCCceEecCccchhhh
Q 043623           94 EENEAYALTSASKLLL  109 (359)
Q Consensus        94 ~~~~~~~~t~~~~~l~  109 (359)
                       -.-.|++|+.|..|.
T Consensus        74 -~~veY~LT~~G~~L~   88 (102)
T d2fswa1          74 -PRVEYSLTPLGEKVL   88 (102)
T ss_dssp             -CEEEEEECHHHHTTH
T ss_pred             -CeehhhhhHhHHHHH
Confidence             012599999887655

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.83  E-value=0.066  Score=34.02  Aligned_cols=46  Identities=17%  Similarity=0.338  Sum_probs=38.6

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|.. ++..|..+||+++|+   ++..+.+=++.|...|++..-
T Consensus         5 D~kIl~~L~~-n~r~s~~~lA~~~gl---s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           5 DKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence            4456677766 378999999999999   679999999999999999754

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.17  Score=33.14  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           47 RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        47 ~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      +|-|-|..|||+.+|+.  ++..+.+.|..|...|++.+..
T Consensus        21 ~G~~Ps~rei~~~~g~~--S~stv~~~l~~Le~kG~I~r~~   59 (71)
T d1jhfa1          21 TGMPPTRAEIAQRLGFR--SPNAAEEHLKALARKGVIEIVS   59 (71)
T ss_dssp             HSSCCCHHHHHHHTTCS--SHHHHHHHHHHHHHTTSEEECS
T ss_pred             hCCCCCHHHHHHHcCCC--CHHHHHHHHHHHHHCcCeecCC
Confidence            35789999999999995  5788999999999999999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.70  E-value=0.41  Score=37.04  Aligned_cols=93  Identities=14%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             cCCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CC-CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IP-SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~-~~D~i~~~~v  261 (359)
                      .+++.+||-+|||.- .++..+++.....++++.|. +.-++.+++..-.+++..+-.+.       .+ .+|+++-+- 
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~-  104 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST-  104 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC-
Confidence            677889999998754 45667777766557788886 55555554422122332221110       12 388877553 


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                          ..   ...++.+.+.++|   +|+++++-.
T Consensus       105 ----G~---~~~~~~~~~~~~~---~G~i~~~G~  128 (174)
T d1f8fa2         105 ----GS---PEILKQGVDALGI---LGKIAVVGA  128 (174)
T ss_dssp             ----CC---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred             ----Cc---HHHHHHHHhcccC---ceEEEEEee
Confidence                22   2457888899999   999988754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=89.64  E-value=0.069  Score=44.51  Aligned_cols=76  Identities=22%  Similarity=0.361  Sum_probs=50.8

Q ss_pred             HHHHhcccccCC--CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC--------CCCceEEeC
Q 043623          183 LIIKDCKHIFDG--LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-------DLPE--------TDNLKFIAG  244 (359)
Q Consensus       183 ~l~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-------~a~~--------~~rv~~~~~  244 (359)
                      .+.+++.  ++.  ..+|||.-||.|.-+..++..  +++|++++. |.+..       ++..        ..|++++.+
T Consensus        77 ~l~kA~g--l~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~  152 (250)
T d2oyra1          77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_dssp             HHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHHhc--CCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence            3455554  333  348999999999999999988  468999997 33322       1111        347899999


Q ss_pred             CCCC---CC-CCccEEEecchh
Q 043623          245 DMNQ---SI-PSADAFLFKLIF  262 (359)
Q Consensus       245 d~~~---~~-~~~D~i~~~~vl  262 (359)
                      |..+   .. +.||+|++--.+
T Consensus       153 Ds~~~L~~~~~~~DvIYlDPMF  174 (250)
T d2oyra1         153 SSLTALTDITPRPQVVYLDPMF  174 (250)
T ss_dssp             CHHHHSTTCSSCCSEEEECCCC
T ss_pred             cHHHHHhccCCCCCEEEECCCC
Confidence            8655   22 248888775443

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.44  E-value=0.08  Score=33.56  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=39.8

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      ++..|+..|.. ++..|..+||+++|+   ++..+.+=++.|...|++..-
T Consensus         4 ~D~~Il~~L~~-n~r~s~~eiA~~l~l---s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           4 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence            45567778876 378999999999999   679999999999999998855

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.20  E-value=0.059  Score=36.87  Aligned_cols=46  Identities=30%  Similarity=0.491  Sum_probs=38.3

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      .|++.|.+.++-+|=++||+.+|+   +..-+|+.|-.|...|+++...
T Consensus        22 ~v~~~L~~~~~evtDe~iA~~tgi---~in~VRk~Ly~L~~~~L~~y~R   67 (88)
T d1q1ha_          22 DVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYRK   67 (88)
T ss_dssp             HHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHhccCcCCHHHHHHHhCC---cHHHHHHHHHHHHhCCceEEEE
Confidence            366666432357999999999999   7899999999999999998764

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=88.74  E-value=0.21  Score=32.43  Aligned_cols=51  Identities=22%  Similarity=0.315  Sum_probs=40.7

Q ss_pred             HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..|...+..|-|..    |..++..+||+.+|+   +..-+++-|+.|.+.|+++...
T Consensus         9 ~~l~~~I~~g~~~~----G~~l~~~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~   59 (69)
T d2hs5a1           9 GILRDAIIDGTFRP----GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL   59 (69)
T ss_dssp             HHHHHHHHHTSSCT----TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHcCCCCC----cCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence            34555555565542    356788999999999   6899999999999999999886

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=88.65  E-value=0.13  Score=32.87  Aligned_cols=46  Identities=17%  Similarity=0.307  Sum_probs=39.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|++.|.. ++..|..+||+.+|+   ++..+.+=++.|...|++...
T Consensus         7 D~~IL~~L~~-n~r~s~~~iA~~lgi---s~~tv~~Ri~~L~~~giI~~~   52 (63)
T d2cfxa1           7 DLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY   52 (63)
T ss_dssp             HHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence            4567778876 379999999999999   578999999999999999764

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=0.11  Score=33.18  Aligned_cols=46  Identities=11%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623           37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT   86 (359)
Q Consensus        37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~   86 (359)
                      +..|+..|... +..|..+||+++|+   ++..+.+=++.|...|++...
T Consensus         7 D~~IL~~L~~~-~r~s~~eiA~~l~l---s~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1           7 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence            45567778764 78999999999999   678999999999999999855

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=88.44  E-value=0.073  Score=39.86  Aligned_cols=65  Identities=14%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK  110 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~  110 (359)
                      ++..|... ++.|..+||+.+++   ++..+.+.++.|...|+|.+....+  |.-.-..++|+.|..+..
T Consensus        38 vL~~l~~~-~~~t~~~La~~~~i---~~~~vsr~i~~L~~~glv~r~~~~~--D~R~~~i~lT~~G~~~~~  102 (137)
T d1z91a1          38 ALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEE--DERSVLISLTEDGALLKE  102 (137)
T ss_dssp             HHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSS--CTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHhhccceEEeecCC--CCCeEEEEECHHHHHHHH
Confidence            34455443 68999999999999   6899999999999999999885311  111135788998885543

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.43  E-value=0.11  Score=39.14  Aligned_cols=63  Identities=11%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +..|..+ ++.|..+||+.+++   ++..+.++++.|...|++.+.....  |.=.-...+|+.|..+.
T Consensus        35 L~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~glI~r~~~~~--D~R~~~l~LT~~G~~~~   97 (144)
T d1lj9a_          35 LVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDAS--NKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS--CTTCEEEEECHHHHHHH
T ss_pred             HHHHHhC-CCCCHHHHHHHHCc---cHhhHHHHHHHHHhhhcccccCCCC--CCCccccccCHHHHHHH
Confidence            3445554 57999999999999   6899999999999999999885210  00012577888777544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.16  E-value=0.78  Score=34.81  Aligned_cols=125  Identities=10%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             cCCCCeEEEEcCCchHH-HHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---C----CCCccEEEecchh
Q 043623          192 FDGLSSLVEVGGGTGSF-ARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---S----IPSADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~----~~~~D~i~~~~vl  262 (359)
                      .+++.+||-+|+|.-.+ +..+++. .+.++++.+. ++-.+.+++..-..++.-.-.+   .    .+++|.++...+ 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  102 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-  102 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence            66788999999776544 4455555 5568999987 5555544431111111111111   0    123555444322 


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh--hhcCCcccCHHHHHHHHH
Q 043623          263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM--TCVPGIERSEKEWERLFF  336 (359)
Q Consensus       263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~t~~e~~~ll~  336 (359)
                         .    ...+..+.+.|+|   +|+++++-....+. ..+       .+++.+.  ...|...++.++|+++++
T Consensus       103 ---~----~~~~~~a~~~l~~---~G~i~~~g~~~~~~-~~~-------~~~~~~~~~~i~gs~~~~~~~~~~~l~  160 (168)
T d1rjwa2         103 ---S----KPAFQSAYNSIRR---GGACVLVGLPPEEM-PIP-------IFDTVLNGIKIIGSIVGTRKDLQEALQ  160 (168)
T ss_dssp             ---C----HHHHHHHHHHEEE---EEEEEECCCCSSEE-EEE-------HHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             ---C----HHHHHHHHHHhcc---CCceEecccccCCC-CCC-------HHHHHHCCcEEEEEeeCCHHHHHHHHH
Confidence               2    2458889999999   89998875432211 111       1111111  113445567888888776

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.88  E-value=0.17  Score=38.21  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623           16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE   95 (359)
Q Consensus        16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~   95 (359)
                      ..+.++++.+-|...+|+.+.         .  |+.+..||.+.+|+   ++..|.+=|+.|...|++.+... +.  .-
T Consensus        10 v~~~l~ilg~kW~l~Il~~l~---------~--G~~rf~el~~~lgi---s~~vLs~rL~~L~~~gLv~r~~~-~~--p~   72 (142)
T d2f2ea1          10 VARPLDVIGDGWSMLIVRDAF---------E--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPA-ES--GS   72 (142)
T ss_dssp             TTTTHHHHCSSSHHHHHHHHH---------T--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-SS--SS
T ss_pred             HHHHHHHHcCCCHHHHHHHHH---------c--CCCCHHHHHHHhhc---cHHHHHHHHHHHHHhcceeeecC-CC--CC
Confidence            344566777778887777642         2  78999999999999   67899999999999999987421 11  01


Q ss_pred             CceEecCccchhhh
Q 043623           96 NEAYALTSASKLLL  109 (359)
Q Consensus        96 ~~~~~~t~~~~~l~  109 (359)
                      ...|++|+.|.-|.
T Consensus        73 r~~Y~LT~~G~~L~   86 (142)
T d2f2ea1          73 HQEYRLTDKGRALF   86 (142)
T ss_dssp             CEEEEECHHHHTTH
T ss_pred             eeEEecCcCcchHH
Confidence            23699999887555

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.55  E-value=0.21  Score=36.13  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=43.4

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   +...+.++++.|...|++.+....+  |.=.-...+|+.|+.+.
T Consensus        47 ~~~t~~ela~~l~~---~~~~vs~~i~~Le~~gli~r~~~~~--D~R~~~i~LT~~G~~~~  102 (115)
T d1hsja1          47 NEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQ--DERTVIVYVTDTQKANI  102 (115)
T ss_dssp             SEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCS--SSSCCEEECCSSHHHHH
T ss_pred             CCcCHHHHHHHHCC---ChhhHHHHHHHHHHcCCeEEEeecC--CCceEEEEECHHHHHHH
Confidence            68999999999999   6899999999999999999885211  11113577888776444

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=87.43  E-value=0.31  Score=32.04  Aligned_cols=43  Identities=16%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      +.|-++||+.+|+   ....+.|.|..|...|++....         +.+.+.+.
T Consensus        27 ~lt~~elA~~lg~---sr~tvsr~l~~l~~~g~I~~~~---------~~i~I~d~   69 (73)
T d1zyba1          27 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELHR---------KEILIPDA   69 (73)
T ss_dssp             ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEET---------TEEEESCG
T ss_pred             ecCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC---------CEEEEccH
Confidence            5799999999999   6899999999999999999774         66766543

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.37  E-value=0.17  Score=36.63  Aligned_cols=56  Identities=11%  Similarity=0.351  Sum_probs=43.6

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      ++.|..+||+.+++   ++..+.+.++.|...|++.+....  .|.-.-.+.+|+.|+...
T Consensus        48 ~~~t~~~la~~l~~---~~~tvs~~i~~Le~~gli~r~~~~--~D~R~~~i~LT~~G~~~~  103 (115)
T d2frha1          48 KEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNE--HDERTVLILVNAQQRKKI  103 (115)
T ss_dssp             SEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCS--SSSCCCEEECCSHHHHHH
T ss_pred             CCCCHHHHHHHHCC---CHhHHHHHHHHHHhhhhheeeecc--cCCceEEEEECHHHHHHH
Confidence            56899999999999   689999999999999999988621  111123578898877433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.22  E-value=0.89  Score=34.51  Aligned_cols=79  Identities=13%  Similarity=0.035  Sum_probs=50.6

Q ss_pred             eEEEEcCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHH
Q 043623          197 SLVEVGGGT--GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKL  273 (359)
Q Consensus       197 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~i  273 (359)
                      +|.=||+|.  +.++..+.++  +.+++++|. ++.++.+++...+... .+..+.....|+|+++     .++....++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIila-----vp~~~~~~v   73 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLC-----TPIQLILPT   73 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcccee-eeeccccccccccccc-----CcHhhhhhh
Confidence            567788773  3444555443  568999998 6666665543323222 2222334569999875     356777889


Q ss_pred             HHHHHHhcCC
Q 043623          274 LKNCREAVAS  283 (359)
Q Consensus       274 L~~~~~~L~p  283 (359)
                      ++++...+++
T Consensus        74 l~~l~~~l~~   83 (165)
T d2f1ka2          74 LEKLIPHLSP   83 (165)
T ss_dssp             HHHHGGGSCT
T ss_pred             hhhhhhhccc
Confidence            9999999988

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.22  Score=38.60  Aligned_cols=90  Identities=16%  Similarity=0.077  Sum_probs=58.1

Q ss_pred             cCCCCeEEEEcC--CchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe---CCCCC------CCCCccEEEec
Q 043623          192 FDGLSSLVEVGG--GTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA---GDMNQ------SIPSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~---~d~~~------~~~~~D~i~~~  259 (359)
                      +.++.+||-.|+  |.|..+..+++.. ++++++.+. ++-.+.+++..--.++.   .|+.+      .-..+|+++.+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence            667889999985  7888899999876 568888775 55455544311112221   12211      11238988865


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD  294 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e  294 (359)
                      .     .    ...+..+.+.|+|   +|+++.+-
T Consensus       105 ~-----g----~~~~~~~~~~l~~---~G~iv~~G  127 (174)
T d1yb5a2         105 L-----A----NVNLSKDLSLLSH---GGRVIVVG  127 (174)
T ss_dssp             C-----H----HHHHHHHHHHEEE---EEEEEECC
T ss_pred             c-----c----HHHHHHHHhccCC---CCEEEEEe
Confidence            3     1    1347888899999   99999874

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.08  E-value=0.078  Score=39.63  Aligned_cols=66  Identities=12%  Similarity=0.178  Sum_probs=47.7

Q ss_pred             cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      +.++..|... ++.|..+||+.+++   +...+.++++.|...|++++....+  |.-.-.+.+|+.|..+.
T Consensus        33 ~~vL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~i~~L~~~gli~r~~~~~--D~R~~~l~lT~~G~~~~   98 (136)
T d2fbia1          33 WRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPK--DQRRVYVNLTEKGQQCF   98 (136)
T ss_dssp             HHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeecCc--cCchhhhccCHHHHHHH
Confidence            3344555553 68999999999999   6899999999999999999875210  00012477888877444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=86.80  E-value=0.36  Score=37.38  Aligned_cols=83  Identities=14%  Similarity=0.198  Sum_probs=50.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceE------EeCCCCCCCCCccEEEecch
Q 043623          196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKF------IAGDMNQSIPSADAFLFKLI  261 (359)
Q Consensus       196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~------~~~d~~~~~~~~D~i~~~~v  261 (359)
                      ++|.-||+|.-..+....-...+..++++|. ++-++..+.       .+....      +..|..+..+++|+|++.- 
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v-   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV-   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence            5788899998766665433334568999998 554444332       111111      1122222245689998863 


Q ss_pred             hccCChhHHHHHHHHHHHhcCC
Q 043623          262 FHDYDDEVCLKLLKNCREAVAS  283 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p  283 (359)
                          +......+++.+.+.+++
T Consensus        81 ----~~~~~~~~~~~i~~~l~~   98 (184)
T d1bg6a2          81 ----PAIHHASIAANIASYISE   98 (184)
T ss_dssp             ----CGGGHHHHHHHHGGGCCT
T ss_pred             ----chhHHHHHHHHhhhccCC
Confidence                334456789999999998

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=86.26  E-value=0.11  Score=40.15  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=47.8

Q ss_pred             CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .++..|... ++.|..+||+.+++   +...+.++++.|...|++.+....+  |.=.-...+|+.|..+.
T Consensus        45 ~vL~~l~~~-~~~t~~~la~~~~l---~~~tvs~~i~rL~~~gli~r~~~~~--D~R~~~l~lT~~G~~~~  109 (162)
T d2fxaa1          45 HILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLN--DKRNTYVQLTEEGTEVF  109 (162)
T ss_dssp             HHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC--------CEEEECHHHHHHH
T ss_pred             HHHhhhccC-CCcCHHHHHHHHcC---CchhhHHHHHHHHHCCCceeecccc--cCeeeeeccCHhHHHHH
Confidence            355566554 68999999999999   6899999999999999999875211  11113588888887444

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.93  E-value=2.8  Score=31.86  Aligned_cols=94  Identities=12%  Similarity=0.001  Sum_probs=55.0

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe-CCCCCC---------CCCccEEEec
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA-GDMNQS---------IPSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~-~d~~~~---------~~~~D~i~~~  259 (359)
                      .+++.+||-+|+|- |..+..+++..-..++++.|. ++-.+.+++..-...+. .+..+.         ...+|+++-.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            67888999998754 456667777777779999998 44444444322222221 111111         1248988776


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      ..-     +   ..+..+...+++   +|..+++-..
T Consensus       106 ~G~-----~---~~~~~a~~~~~~---~~g~~~~~~~  131 (176)
T d2jhfa2         106 IGR-----L---DTMVTALSCCQE---AYGVSVIVGV  131 (176)
T ss_dssp             SCC-----H---HHHHHHHHHBCT---TTCEEEECSC
T ss_pred             CCc-----h---hHHHHHHHHHhc---CCcceEEecC
Confidence            432     2   336667777887   5545444443

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.85  E-value=0.27  Score=36.07  Aligned_cols=66  Identities=12%  Similarity=0.237  Sum_probs=46.6

Q ss_pred             cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhh
Q 043623           38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLL  108 (359)
Q Consensus        38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l  108 (359)
                      +-++..|... ++++|..+||+.+++   +...+.+.++.|...|+|.+....+.++  .-...+|+.|+-.
T Consensus        37 ~~iL~~l~~~~~~~~t~~eia~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R--~~~i~lT~~G~~~  103 (125)
T d1p4xa1          37 FILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDER--NTYISISEEQREK  103 (125)
T ss_dssp             HHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTT--SEEEECCHHHHHH
T ss_pred             HHHHHHHHHhccCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCceeecccCCCC--eEEEEECHHHHHH
Confidence            3344445332 257999999999999   6799999999999999999885311011  1247778877633

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.76  E-value=2.3  Score=30.73  Aligned_cols=80  Identities=11%  Similarity=0.161  Sum_probs=51.4

Q ss_pred             eEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhccCC
Q 043623          197 SLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHDYD  266 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~~~  266 (359)
                      +|+=+|+  |.++..+++..  .+..++++|. ++.++.+.+...+.++.||..++       ...+|+++..     .+
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~   74 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG   74 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence            5666676  66666666543  3568999998 77776655434678899999872       2358888774     23


Q ss_pred             hhHHHHHHHHHHHhcCC
Q 043623          267 DEVCLKLLKNCREAVAS  283 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p  283 (359)
                      +++.-.+.....+.+.+
T Consensus        75 ~d~~N~~~~~~~k~~~~   91 (132)
T d1lssa_          75 KEEVNLMSSLLAKSYGI   91 (132)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            33333355556666777

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.18  Score=33.06  Aligned_cols=60  Identities=12%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623           36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA  104 (359)
Q Consensus        36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~  104 (359)
                      .+-.|.+.|... +|.++-.||+.+|++  ...-+.+.|-.|...|.|.+.+.+      +..|.++..
T Consensus         6 ~eekI~~~L~~~-g~~~Al~iak~lGl~--kakeVN~~LY~L~k~g~v~k~~~t------PP~W~L~~~   65 (73)
T d1xmka1           6 IKEKICDYLFNV-SDSSALNLAKNIGLT--KARDINAVLIDMERQGDVYRQGTT------PPIWHLTDK   65 (73)
T ss_dssp             HHHHHHHHHHHT-CCEEHHHHHHHHCGG--GHHHHHHHHHHHHHTTSEEEECSS------SCEEEECHH
T ss_pred             HHHHHHHHHHHc-CCchHHHHHHHhCCC--cHHHHhHHHHHHHHCCCeecCCCC------CCceeeecc
Confidence            345667778665 789999999999994  224699999999999999988532      457888864

>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PH0730 N-terminal domain-like
domain: Hypothetical protein PH0730
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.64  E-value=0.32  Score=31.45  Aligned_cols=49  Identities=20%  Similarity=0.329  Sum_probs=41.9

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      .|+....||+.+++   .++.+|..++.|...|+++...         ..-.+|+.|+.+.
T Consensus        16 qPiGRr~La~~L~l---~Er~vRte~~~Lk~~gLI~~~~---------~Gm~lTe~G~~~l   64 (69)
T d2p8ta1          16 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ---------RGHFLTLKGKEIR   64 (69)
T ss_dssp             SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred             CCccHHHHHHHcCC---cHHHHHHHHHHHHHCCCeeeeC---------CCCEECHhHHHHH
Confidence            69999999999999   6899999999999999999996         4578888877443

>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Transcriptional regulator YydK
species: Bacillus subtilis [TaxId: 1423]

Probab=85.49  E-value=0.56  Score=31.07  Aligned_cols=45  Identities=16%  Similarity=0.366  Sum_probs=37.6

Q ss_pred             CCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623           48 GRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT  102 (359)
Q Consensus        48 ~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t  102 (359)
                      |..+ |..+||+.+++   +..-+++-|+.|...|++.....       .|.|...
T Consensus        19 G~~LPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~g-------~G~~V~~   64 (78)
T d3bwga1          19 GDKLPVLETLMAQFEV---SKSTITKSLELLEQKGAIFQVRG-------SGIFVRK   64 (78)
T ss_dssp             TCBCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEETT-------TEEEECC
T ss_pred             cCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEcC-------cEEEEcc
Confidence            3566 89999999999   68999999999999999998863       4666543

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.20  E-value=0.31  Score=35.70  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             CcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623           39 GIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL  109 (359)
Q Consensus        39 glf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~  109 (359)
                      -++..|... +++.|..+||+.+++   +...+.+.++.|...|+|.+....+  |.=.-...+|+.|+-+.
T Consensus        37 ~vL~~l~~~~~~~~~~~~ia~~l~~---~~~~vs~~v~~L~~~glV~r~~~~~--D~R~v~i~LT~~G~~~~  103 (125)
T d1p4xa2          37 TILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTE--DERKILIHMDDAQQDHA  103 (125)
T ss_dssp             HHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSS--STTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHccCCCccHHHHHHHHCC---CcchHHHHHHHHHhccCEeeeecCC--CCCeEEEEECHHHHHHH
Confidence            345555322 257899999999999   6899999999999999999875211  11113577788776433

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.06  E-value=0.41  Score=37.18  Aligned_cols=94  Identities=11%  Similarity=0.031  Sum_probs=59.2

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeC---CCCC---C--C-CCccEEEecc
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAG---DMNQ---S--I-PSADAFLFKL  260 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~---d~~~---~--~-~~~D~i~~~~  260 (359)
                      .+++.+||-+|||. |.++..+++..--.++++.|. ++-.+.+++..-.+++.-   +..+   .  . ..+|+++-+-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            67788999999887 788888888654447999998 544555443111122211   1111   0  1 1389877653


Q ss_pred             hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      -     .+   ..+..+.+.++|   +|+++++-..
T Consensus       105 g-----~~---~~~~~a~~~~~~---~G~iv~~G~~  129 (174)
T d1jqba2         105 G-----GS---ETLSQAVKMVKP---GGIISNINYH  129 (174)
T ss_dssp             S-----CT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred             C-----CH---HHHHHHHHHHhc---CCEEEEEeec
Confidence            2     11   347778889999   8999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.93  E-value=3.2  Score=31.45  Aligned_cols=93  Identities=9%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             cCCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCC--C-----CCC-CccEEEecch
Q 043623          192 FDGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMN--Q-----SIP-SADAFLFKLI  261 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~--~-----~~~-~~D~i~~~~v  261 (359)
                      .+++.+||-+|+|.. ..+..+++.....++++.|. ++-.+.+++..-..++..+-.  +     ..+ .+|+++-+- 
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~-  108 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV-  108 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS-
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec-
Confidence            467789999998765 44467777666668888888 544555444222233322211  0     011 388877653 


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623          262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI  295 (359)
Q Consensus       262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~  295 (359)
                          ...   ..+..+.+.+++   +|+++++-.
T Consensus       109 ----g~~---~~~~~a~~~l~~---~G~iv~~G~  132 (172)
T d1h2ba2         109 ----GSQ---ATVDYTPYLLGR---MGRLIIVGY  132 (172)
T ss_dssp             ----CCH---HHHHHGGGGEEE---EEEEEECCC
T ss_pred             ----Ccc---hHHHHHHHHHhC---CCEEEEEeC
Confidence                222   457888899999   999998764

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=84.33  E-value=0.62  Score=30.91  Aligned_cols=36  Identities=8%  Similarity=0.029  Sum_probs=33.4

Q ss_pred             CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      -|.|-++||..+|+   ....+.|.|..|...|++...+
T Consensus        28 ~~lt~~eLA~~~G~---sretvsr~L~~l~~~glI~~~~   63 (81)
T d2gaua1          28 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG   63 (81)
T ss_dssp             CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence            47999999999999   6899999999999999999875

>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Fatty acid responsive transcription factor FadR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=0.6  Score=30.63  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=38.8

Q ss_pred             HHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           32 LKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        32 l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |...+.-|-+..    |..+ |..+||+.+++   +..-+++-++.|...|++....
T Consensus        12 i~~~I~~g~~~~----G~~LPs~~eLa~~~~v---Sr~tvr~Al~~L~~~G~i~~~~   61 (74)
T d1hw1a1          12 IIESIWNNRFPP----GTILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQH   61 (74)
T ss_dssp             HHHHHHTTSSCT----TSBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHcCCCCC----cCCCccHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEe
Confidence            444444454442    3566 89999999999   6899999999999999999986

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.78  E-value=1.1  Score=30.82  Aligned_cols=68  Identities=18%  Similarity=0.278  Sum_probs=44.8

Q ss_pred             cCCCCeEEEEc-CCchHHH--HHHHHHCCCCeEEEeec--hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchh
Q 043623          192 FDGLSSLVEVG-GGTGSFA--RIISEAFPSIKCSVLEL--PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIF  262 (359)
Q Consensus       192 ~~~~~~vlDvG-~G~G~~~--~~l~~~~p~~~~~~~D~--~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vl  262 (359)
                      ....++|.=|| ||+|--+  ..+.++  +.+|+|.|.  ....+...+ ..+.+..+...+..++.|+|+.+..+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI   77 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAI   77 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCc
Confidence            45667888888 7777554  344444  678999997  344444332 45666666555455679999999876

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=0.92  Score=38.32  Aligned_cols=68  Identities=10%  Similarity=0.107  Sum_probs=49.1

Q ss_pred             cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CC----CCccEEE
Q 043623          192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SI----PSADAFL  257 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~----~~~D~i~  257 (359)
                      ..++.+|||+.+|.|.=+..++... ++.+++++|. +.-++.+++      ..++.+...|+..  +.    ..||.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            4567899999999999999988754 5678999998 443433322      5778888888765  21    2489887


Q ss_pred             ec
Q 043623          258 FK  259 (359)
Q Consensus       258 ~~  259 (359)
                      +-
T Consensus       172 ~D  173 (293)
T d2b9ea1         172 LD  173 (293)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.30  E-value=2.3  Score=32.19  Aligned_cols=94  Identities=15%  Similarity=0.070  Sum_probs=56.0

Q ss_pred             cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCC-CCCC--------C-CCccEEEec
Q 043623          192 FDGLSSLVEVGGG-TGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGD-MNQS--------I-PSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d-~~~~--------~-~~~D~i~~~  259 (359)
                      .+++.+||-+||| .|.++..+++..-..++++.|. ++-.+.+++-.--.++.-+ -.++        . ..+|+++-+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~  105 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence            6778899988865 4567777888776667888887 4445555441111222111 1111        1 248888875


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV  296 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~  296 (359)
                      -     ..+   ..++.+...+++   ||.++++-..
T Consensus       106 ~-----G~~---~~~~~~~~~~~~---g~~~~~v~~~  131 (176)
T d2fzwa2         106 I-----GNV---KVMRAALEACHK---GWGVSVVVGV  131 (176)
T ss_dssp             S-----CCH---HHHHHHHHTBCT---TTCEEEECSC
T ss_pred             C-----CCH---HHHHHHHHhhcC---CceeEEEEee
Confidence            3     222   457788888988   7777655433

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.00  E-value=0.58  Score=30.13  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=32.8

Q ss_pred             CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      |.|-++||..+|+   ....+.|.|+.|...|+++..+
T Consensus        29 ~lt~~~lA~~~G~---sRetvsr~L~~l~~~glI~~~~   63 (69)
T d1i5za1          29 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG   63 (69)
T ss_dssp             ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred             CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence            6999999999999   6899999999999999999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.97  E-value=1.8  Score=33.31  Aligned_cols=134  Identities=11%  Similarity=0.034  Sum_probs=71.4

Q ss_pred             cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEE---eCCCCC-C-----CC-CccEEEec
Q 043623          192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFI---AGDMNQ-S-----IP-SADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~---~~d~~~-~-----~~-~~D~i~~~  259 (359)
                      .+++.+|+=+|+|. |.++..+++.+...+++++|. ++-++.+++..-..++   ..|... .     .+ ++|+++-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            67788999999765 456667777766678999998 6777776651112222   122111 0     11 48877766


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD  337 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~  337 (359)
                      ..     ..   ..+......+.++  +|+++++-..........+  .........+.....|......++.++++.
T Consensus       107 ~g-----~~---~~~~~a~~~~~~~--~G~~v~vG~~~~~~~~~~~--~~~~~~~~~i~Gs~~G~~~~~~dip~li~~  172 (176)
T d1d1ta2         107 IG-----HL---ETMIDALASCHMN--YGTSVVVGVPPSAKMLTYD--PMLLFTGRTWKGCVFGGLKSRDDVPKLVTE  172 (176)
T ss_dssp             SC-----CH---HHHHHHHTTSCTT--TCEEEECSCCCTTCCEEEC--THHHHTTCEEEECSGGGCCHHHHHHHHHHH
T ss_pred             CC-----ch---HHHHHHHHHhhcC--CeEEEEEEccccccccCCC--HHHHhCCCEEEEEEEeCCCcHHHHHHHHHH
Confidence            42     12   2344444555440  5888887654333321110  111122222222233445557777777654

>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-inducible transcription repressor HrcA, N-terminal domain
domain: Heat-inducible transcription repressor HrcA, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.76  E-value=0.76  Score=31.21  Aligned_cols=40  Identities=15%  Similarity=0.299  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623           48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV   88 (359)
Q Consensus        48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~   88 (359)
                      |.|.+..+|++.+++.- ++.-++..|..|...|+|.....
T Consensus        21 g~Pv~s~~i~~~~~l~~-S~aTIRn~m~~LE~~G~l~~~h~   60 (87)
T d1stza1          21 KKPVSSQRVLEVSNIEF-SSATIRNDMKKLEYLGYIYQPHT   60 (87)
T ss_dssp             CSCBCHHHHHHHSCCCS-CHHHHHHHHHHHHHTTSEECCSS
T ss_pred             CCccCHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcccCCCC
Confidence            68999999999977732 47899999999999999998753

>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MerB N-terminal domain-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=82.17  E-value=0.22  Score=30.89  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=27.7

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ++..|+. |.|+|+++||..+|.+   ...++..   |.++-=.++++
T Consensus         7 LLr~LA~-G~PVs~~~LA~alg~~---~~eV~~a---L~~~p~tEyD~   47 (60)
T d1s6la1           7 LLRELAK-GRPVSRTTLAGILDWP---AERVAAV---LEQATSTEYDK   47 (60)
T ss_dssp             HHHHHHT-TCCBCHHHHHHHHTCC---HHHHHHH---HTTCCSSCEET
T ss_pred             HHHHHhC-CCCcCHHHHHHHhCCC---HHHHHHH---HHhCCCceecC
Confidence            3456665 7999999999999994   5555544   44444444443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=81.95  E-value=0.68  Score=40.51  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=37.8

Q ss_pred             hChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-------CCCeEEEeech
Q 043623          162 QNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-------PSIKCSVLELP  227 (359)
Q Consensus       162 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~  227 (359)
                      +.|+....|.+..+..   ...+.....  .++..+|||+|+|+|.++..+++..       -.+++..++..
T Consensus        52 Tsp~is~~Fg~~ia~~---~~~~~~~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s  119 (365)
T d1zkda1          52 TSPEISQMFGELLGLW---SASVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN  119 (365)
T ss_dssp             SHHHHCHHHHHHHHHH---HHHHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred             CCCchHHHHHHHHHHH---HHHHHHHhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccc
Confidence            4455666666665321   122223332  3455689999999999999887653       23467888873

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=81.84  E-value=3.3  Score=29.76  Aligned_cols=85  Identities=7%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             eEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhccCC
Q 043623          197 SLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHDYD  266 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~~~  266 (359)
                      +++=+|+|  .++..+++..  -+..++++|. ++.++.++. .....+.+|..++       ...+|++++..    -+
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~----~~   74 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAI----GA   74 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-TCSEEEECCTTCTTHHHHHTGGGCSEEEECC----CS
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-hCCcceeeecccchhhhccCCccccEEEEEc----Cc
Confidence            45556664  5555555433  3567899998 788888765 3346677888773       22477766653    12


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623          267 DEVCLKLLKNCREAVASSDGREKVII  292 (359)
Q Consensus       267 d~~~~~iL~~~~~~L~p~~~gG~lli  292 (359)
                      +.....+...+++.+.    ..++++
T Consensus        75 ~~~~~~~~~~~~~~~~----~~~iia   96 (134)
T d2hmva1          75 NIQASTLTTLLLKELD----IPNIWV   96 (134)
T ss_dssp             CHHHHHHHHHHHHHTT----CSEEEE
T ss_pred             hHHhHHHHHHHHHHcC----CCcEEe
Confidence            3344444555555444    356654

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=81.25  E-value=0.6  Score=30.04  Aligned_cols=44  Identities=9%  Similarity=0.040  Sum_probs=37.7

Q ss_pred             cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623           40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK   87 (359)
Q Consensus        40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~   87 (359)
                      ..+.|.. +...|+-+||+++|+   ..+.+.+.|-.|...|.|.+.+
T Consensus        15 ~l~~L~~-~~~~tA~~LAk~Lg~---~Kk~VNr~LY~L~~~G~v~~~~   58 (70)
T d1sfua_          15 EVLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP   58 (70)
T ss_dssp             HHHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHhcCC-CCCchHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecCC
Confidence            3456765 478999999999999   4689999999999999999886

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.99  E-value=2.1  Score=30.82  Aligned_cols=86  Identities=15%  Similarity=0.175  Sum_probs=54.4

Q ss_pred             eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhccCChh
Q 043623          197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHDYDDE  268 (359)
Q Consensus       197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~~~d~  268 (359)
                      +|+=+  |.|..+..+++..-+..++++|. ++..+.++ ...+.++.||..++       ...++.+++..    -+|.
T Consensus         2 HivI~--G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d~   74 (129)
T d2fy8a1           2 HVVIC--GWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESDS   74 (129)
T ss_dssp             CEEEE--SCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSHH
T ss_pred             EEEEE--CCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec----cchh
Confidence            34444  55778888888877767888887 55555443 45788999999872       23577777643    2344


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623          269 VCLKLLKNCREAVASSDGREKVIIV  293 (359)
Q Consensus       269 ~~~~iL~~~~~~L~p~~~gG~lli~  293 (359)
                      ....+...+ +.+.|   ..++++.
T Consensus        75 ~n~~~~~~~-r~~~~---~~~iia~   95 (129)
T d2fy8a1          75 ETIHCILGI-RKIDE---SVRIIAE   95 (129)
T ss_dssp             HHHHHHHHH-HHHCS---SSCEEEE
T ss_pred             hhHHHHHHH-HHHCC---CceEEEE
Confidence            444444444 45666   5665543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=80.79  E-value=4.4  Score=30.78  Aligned_cols=98  Identities=10%  Similarity=-0.024  Sum_probs=58.6

Q ss_pred             cCCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEE---eCCCCC------CC-CCccEEEec
Q 043623          192 FDGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFI---AGDMNQ------SI-PSADAFLFK  259 (359)
Q Consensus       192 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~---~~d~~~------~~-~~~D~i~~~  259 (359)
                      .+++.+||-+|||.. .++..+++.....++++.|. ++-++.+++..-..++   ..|...      .. ..+|+++-.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            677899999998754 55556777766668999998 5556655542222222   222110      01 148888765


Q ss_pred             chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623          260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE  299 (359)
Q Consensus       260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~  299 (359)
                      -.     .   ...+......+++  ++|+++++-...++
T Consensus       105 ~g-----~---~~~~~~~~~~~~~--~~G~~v~vG~~~~~  134 (174)
T d1p0fa2         105 AG-----R---IETMMNALQSTYC--GSGVTVVLGLASPN  134 (174)
T ss_dssp             SC-----C---HHHHHHHHHTBCT--TTCEEEECCCCCTT
T ss_pred             CC-----C---chHHHHHHHHHHH--hcCceEEEEEecCc
Confidence            32     1   2346666666655  05888887764433

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.24  E-value=2.8  Score=28.27  Aligned_cols=66  Identities=15%  Similarity=0.069  Sum_probs=41.1

Q ss_pred             eEEEEc-CCchHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhc
Q 043623          197 SLVEVG-GGTGSFARIISEAFPSIKCSVLEL--PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFH  263 (359)
Q Consensus       197 ~vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~--~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh  263 (359)
                      +|-=|| ||+|--+.+..-..-+.+|++.|.  ++..+..+ ...+++..+.-.+.+.+.|+|+.+..+-
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~-~~Gi~i~~gh~~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR-KLGIPIFVPHSADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH-HCCCeEEeeecccccCCCCEEEEecCcC
Confidence            444456 777765554444445789999998  34555443 3346665553333455699999998874