Citrus Sinensis ID: 043626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHcccEEEEEEccHHHHHHHHHccccccEEEcccccccccccccccEEEcccHHHHccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHEcccccEEEEEEccHHHHHHHHHccccccEEEHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEcccccccccccccccccccccccccccccHccccEHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
manrpeliappeifyddtearkytsssRIIDIQAKLSERALELlalpddgvprllldigcgsglsgetlsenghqwiglDISQSMLNIALEREVegdlllgdmgqglglrpgvvdGAISISAVQWLCnadkasheprLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGvvvdyphssksrkeflvltcgppsisseapkgkvgdmescsddessgdeenrtvcisdrhrprkkqkitnkgkgreWVLKKKEQmrrkgcavppdtkyTARKRKARF
Flexible Loop (DISEMBL)
manrpeliappeifyddteARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGppsisseapkgkvgdmescsddessgdeenrtvcisdrhrprkkqkitnkgkgrewvlkkkeqmrrkgcavppdtkytarkrkarf
Low Complexity Region (SEG)
MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEgdlllgdmgqglglRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGdmescsddessgdeeNRTVCISDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF
Disordered region (IsUnstruct)
************IFYDDT**RKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS****KEFLVLTC***************************************************************************************
Disordered Region (DISOPRED)
**NR***IAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPP******************************************************VLKKKEQMRRKGCAVPPDTKY**RKR****
Disordered Region (DISEMBL)
MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSIS**************************TVCISDRHRPRKKQKITNKGKGREWVLKK**************************
Disordered Region (DISPRO)
*******IAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGP****************************************************REWVLKKKEQMRRK*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9CY21	281	Uncharacterized methyltra	yes	no	0.951	0.985	0.568	9e-86
O43709	281	Uncharacterized methyltra	yes	no	0.945	0.978	0.545	1e-80
Q55DA6	287	Probable methyltransferas	yes	no	0.972	0.986	0.503	2e-80
Q58DP0	281	Uncharacterized methyltra	yes	no	0.945	0.978	0.538	3e-79
P25627	275	Putative methyltransferas	yes	no	0.938	0.992	0.489	1e-68
Q10162	268	Putative methyltransferas	yes	no	0.910	0.988	0.470	9e-68
P26236	224	Magnesium-protoporphyrin	yes	no	0.319	0.415	0.299	0.0006
P36571	255	Malonyl-CoA O-methyltrans	N/A	no	0.319	0.364	0.314	0.0006
P38892	291	Probable S-adenosylmethio	no	no	0.278	0.278	0.340	0.0006
B9MBN9	258	Trans-aconitate 2-methylt	yes	no	0.450	0.507	0.335	0.0008

>sp|Q9CY21|WBS22_MOUSE Uncharacterized methyltransferase WBSCR22 OS=Mus musculus GN=Wbscr22 PE=2 SV=1

 Score =  317 bits (811), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 165/290 (56%), Positives = 202/290 (69%), Gaps = 13/290 (4%)

Query: 2   ANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCG 61
           + RPE   PPE+FYD  EARKY  +SR+IDIQ K++ERALELL LP+ G P  LLDIGCG
Sbjct: 5   SRRPEHSGPPELFYDQNEARKYVRNSRMIDIQTKMTERALELLCLPE-GQPSYLLDIGCG 63

Query: 62  SGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISIS 121
           SGLSG+ +SE GH W+G+DIS +ML+ AL+R+ EGDLLLGDMGQG+  RPG  DG ISIS
Sbjct: 64  SGLSGDYISEEGHYWVGIDISPAMLDAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISIS 123

Query: 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
           AVQWLCNA+K S  P  RL  FF SLY  L RGARAV Q+YPE+  Q ELI   A RAGF
Sbjct: 124 AVQWLCNANKKSDVPARRLYCFFSSLYSALVRGARAVLQLYPENSEQLELITTQATRAGF 183

Query: 182 AGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCIS 241
            GGVVVD+P+S+K++K +L L  GP   S+  PKG          +    D+ + ++  S
Sbjct: 184 TGGVVVDFPNSAKAKKFYLCLFSGP---STSLPKGLT--------ESQDADQASESMFTS 232

Query: 242 DRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           +R  P KK +     K REWVL+KKE+ RR+G  V PDT+YT RKRK RF
Sbjct: 233 ERA-PHKKARRDLVKKSREWVLEKKERRRRQGKEVRPDTQYTGRKRKPRF 281

Methyltransferase that may act on DNA.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|O43709|WBS22_HUMAN Uncharacterized methyltransferase WBSCR22 OS=Homo sapiens GN=WBSCR22 PE=1 SV=2

 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/288 (54%), Positives = 199/288 (69%), Gaps = 13/288 (4%)

Query: 4   RPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSG 63
           RPE   PPE+FYD+TEARKY  +SR+IDIQ +++ RALELL LP++  P  LLDIGCG+G
Sbjct: 7   RPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENK-PCYLLDIGCGTG 65

Query: 64  LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAV 123
           LSG  LS+ GH W+GLDIS +ML+ A++RE+EGDLLLGDMGQG+  +PG  DG ISISAV
Sbjct: 66  LSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCISISAV 125

Query: 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183
           QWLCNA+K S  P  RL  FF SL+  L RG+RAV Q+YPE+  Q ELI   A +AGF+G
Sbjct: 126 QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKAGFSG 185

Query: 184 GVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDR 243
           G+VVDYP+S+K++K +L L  GP   S+  P+G   + +     ES    E   + +S R
Sbjct: 186 GMVVDYPNSAKAKKFYLCLFSGP---STFIPEGLSENQDEVEPRESVFTNERFPLRMSRR 242

Query: 244 HRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
              RK          R WVL+KKE+ RR+G  V PDT+YT RKRK RF
Sbjct: 243 GMVRKS---------RAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 281

Methyltransferase that may act on DNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q55DA6|WBS22_DICDI Probable methyltransferase WBSCR22 homolog OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1

 Score =  299 bits (765), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 147/292 (50%), Positives = 209/292 (71%), Gaps = 9/292 (3%)

Query: 3   NRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
           +RPE IAPPEIFYDD E++KY+S+SRII+IQ K++ERA ELLA+P+     +LLDIGCGS
Sbjct: 2   SRPEHIAPPEIFYDDVESKKYSSNSRIIEIQTKMAERAYELLAIPETAEGLMLLDIGCGS 61

Query: 63  GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISA 122
           G+SG+ +++ GH WIG DISQ ML++A++REVEGD++L D+GQG   R G  D AISISA
Sbjct: 62  GISGDVITDAGHYWIGCDISQHMLDVAIDREVEGDVMLRDIGQGFPFRAGSFDAAISISA 121

Query: 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA 182
           +QWLCNA+K+ H PR RL  FF SL+  L RG +A+ Q YPE+ AQ E+I  +A+R GF+
Sbjct: 122 IQWLCNAEKSHHNPRKRLHTFFQSLFNVLTRGGKAILQFYPENSAQIEMITASALRCGFS 181

Query: 183 GGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISD 242
           GG+++D+P+SSK++K FLVL  G  +I   A KG  G+     ++E S +     V  S+
Sbjct: 182 GGLLIDFPNSSKAKKYFLVLFTGNNNIMPSA-KGVEGEEYEQQEEEDSNE-----VKYSN 235

Query: 243 RHRPRK---KQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           R R R+   K K + + K +EW++ KK++ R++G  +  D+K++ RKR  +F
Sbjct: 236 RKRDRRRVTKSKGSAQHKTKEWIMNKKDRQRKQGREIKNDSKFSGRKRGPKF 287

Probable DNA methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q58DP0|WBS22_BOVIN Uncharacterized methyltransferase WBSCR22 OS=Bos taurus GN=WBSCR22 PE=2 SV=1

 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/288 (53%), Positives = 195/288 (67%), Gaps = 13/288 (4%)

Query: 4   RPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSG 63
           RPEL  PPE++YD  EARKY  +SR+ID+Q K++ RALELL +P+D  P  +LDIGCG+G
Sbjct: 7   RPELRGPPELYYDKNEARKYVRNSRMIDVQIKMTGRALELLCVPEDK-PCYVLDIGCGTG 65

Query: 64  LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAV 123
           LSG+ LS+ GH W+G+DIS +ML+ AL+RE +GD++LGDMGQG+  +PG  D  ISISAV
Sbjct: 66  LSGDYLSDEGHYWVGIDISPAMLDEALDRETQGDVILGDMGQGIPFKPGTFDACISISAV 125

Query: 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183
           QWLCNA+K S  P  RL  FF SLY  L RG RAV Q+YPE+  Q ELI   A RAGF G
Sbjct: 126 QWLCNANKKSDIPAKRLYCFFSSLYSVLVRGGRAVLQLYPENSEQLELITTQATRAGFTG 185

Query: 184 GVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDR 243
           GVVVDYP+S+K++K +L L  GP   S+  P+G   D E     ES+   +     I+ R
Sbjct: 186 GVVVDYPNSAKAKKFYLCLFSGP---STSLPEGLSEDTEEEKPAESTFTADRIPYRIARR 242

Query: 244 HRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
              R         K REWVL+KK + RR+G  V PDT+YT RKRK RF
Sbjct: 243 GVVR---------KSREWVLEKKARRRRQGKEVCPDTQYTGRKRKPRF 281

Methyltransferase that may act on DNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P25627|BUD23_YEAST Putative methyltransferase BUD23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/290 (48%), Positives = 191/290 (65%), Gaps = 17/290 (5%)

Query: 3   NRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
           +RPE +APPEIFY+D+EA KYT S+R+  IQAK++ RALELL L        +LDIGCGS
Sbjct: 2   SRPEELAPPEIFYNDSEAHKYTGSTRVQHIQAKMTLRALELLNLQP---CSFILDIGCGS 58

Query: 63  GLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISIS 121
           GLSGE L++ G H W GLDIS SML   L RE+EGDL+L DMG G+  R G  D AISIS
Sbjct: 59  GLSGEILTQEGDHVWCGLDISPSMLATGLSRELEGDLMLQDMGTGIPFRAGSFDAAISIS 118

Query: 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
           A+QWLCNAD + ++P+ RL  FF +LY  L +G + V Q YP++  Q + IL +A  AGF
Sbjct: 119 AIQWLCNADTSYNDPKQRLMRFFNTLYAALKKGGKFVAQFYPKNDDQVDDILQSAKVAGF 178

Query: 182 AGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCIS 241
           +GG+VVD P S K++K +LVL+ G P      P+G+    E  + D  + DEEN  +   
Sbjct: 179 SGGLVVDDPESKKNKKYYLVLSSGAP------PQGE----EQVNLDGVTMDEENVNLKKQ 228

Query: 242 DRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
            R R +  +   +K   + ++L+KKE M+R+G  V  D+K+T RKR+ RF
Sbjct: 229 LRQRLKGGK---DKESAKSFILRKKELMKRRGRKVAKDSKFTGRKRRHRF 275

Putative methyltransferase involved in positioning the proximal bud pole signal.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q10162|YAU6_SCHPO Putative methyltransferase C26A3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26A3.06 PE=4 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/291 (47%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 3   NRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
           +RPE IAPPEIFY+D EA KY++++RI  IQ ++SERALELL   D   P  +LDIGCGS
Sbjct: 2   SRPEHIAPPEIFYNDVEAGKYSTNTRIQSIQTEMSERALELL---DAEGPSFILDIGCGS 58

Query: 63  GLSGETLSENGHQWIGLDISQSMLNIALE-REVEGDLLLGDMGQGLGLRPGVVDGAISIS 121
           G+S +     GH  +G+DIS SML++ALE +E+EGDLLL DMG G+  RPG  DG ISIS
Sbjct: 59  GISTQIGESQGHVVVGMDISPSMLSVALESQEIEGDLLLCDMGTGVPFRPGTFDGVISIS 118

Query: 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
           A+QWL NADK  + P+ RL  FF +LY  + RG RAV Q YPE+   +++I+  A +AGF
Sbjct: 119 AIQWLLNADKTCNVPQRRLNRFFQTLYISMKRGGRAVMQYYPETEKSQQMIMDTARKAGF 178

Query: 182 AGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCIS 241
           AGG+VVD+P S + +K +LVL  G           +  D+ S + D+   + + R +   
Sbjct: 179 AGGIVVDHPESKRQKKYYLVLQAGGT---------RTLDISSMTLDQEGTNAKQRKL--- 226

Query: 242 DRHRPRKKQKITNKGKGREWVLKKKEQMRRKG-CAVPPDTKYTARKRKARF 291
                +KKQ ++     RE+++ KKE  R++G   VP D+KY+ R+RKA F
Sbjct: 227 -----KKKQDMST----REYIIHKKELNRKRGRLHVPKDSKYSGRRRKAAF 268

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P26236|BCHM_RHOCA Magnesium-protoporphyrin O-methyltransferase OS=Rhodobacter capsulatus GN=bchM PE=1 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 14/107 (13%)

Query: 12  EIFYDDTEARKY----TSSSRIIDIQAKLSE-----RALELLALPDDGVPRLLLDIGCGS 62
           E ++D T  R +    T+  ++  ++  + E     RA+ L  LPDD     ++D GCG+
Sbjct: 13  EHYFDRTATRAWARLTTADEKVSKVRQTVREGRDTMRAVMLSRLPDDLTGCRVMDAGCGT 72

Query: 63  GLSGETLSENGHQWIGLDISQSMLNIALER---EVEG--DLLLGDMG 104
           GL+   L+  G   + +DIS  +++IA +R   E+ G     +GDM 
Sbjct: 73  GLTTVELARRGADVVAVDISPQLIDIAKDRLPPELRGKVSFHVGDMA 119

Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor.

Rhodobacter capsulatus (taxid: 1061)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P36571|BIOC_SERMA Malonyl-CoA O-methyltransferase BioC OS=Serratia marcescens GN=bioC PE=1 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 12/105 (11%)

Query: 55  LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114
           LLD GCG+G       E G +   LD++  ML++A +R+     LLGD+ Q + L    +
Sbjct: 50  LLDAGCGTGYFSRMWRERGKRVTALDLAPGMLDVARQRQAAHHYLLGDIEQ-VPLPDAAM 108

Query: 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
           D   S   VQW  +           L A    LYR    G   +F
Sbjct: 109 DICFSSLVVQWCSD-----------LPAALAELYRVTRPGGVILF 142

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Serratia marcescens (taxid: 615)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|P38892|CRG1_YEAST Probable S-adenosylmethionine-dependent methyltransferase CRG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRG1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 50  GVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDL-----LLGDMG 104
           G  + L+DIGCG+G +   +     + IG+D S +ML+IA +   E  L      +   G
Sbjct: 37  GTRKSLVDIGCGTGKATFVVEPYFKEVIGIDPSSAMLSIAEKETNERRLDKKIRFINAPG 96

Query: 105 QGL-GLRPGVVDGAISISAVQWLCNADK 131
           + L  +RP  VD  IS  A+ W CN ++
Sbjct: 97  EDLSSIRPESVDMVISAEAIHW-CNLER 123

Probable S-adenosylmethionine-dependent methyltransferase which mediates cantharidin resistance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9MBN9|TAM_ACIET Trans-aconitate 2-methyltransferase OS=Acidovorax ebreus (strain TPSY) GN=tam PE=3 SV=1

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 72/158 (45%), Gaps = 27/158 (17%)

Query: 37  SER---ALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALE 91
           SER   A+ELLA      PR ++D+GCG+G S + L E     Q IGLD S++ML  A +
Sbjct: 14  SERTRPAVELLARVSHPAPRHIVDLGCGNGNSTQLLLERFPQSQLIGLDNSEAMLASARK 73

Query: 92  REVEGDLLLGDMGQGLGLRPGVVDGAISISA-VQWLCNADKASHEPRLRLKAFFGSLYRC 150
           R      +  D+       P V    I  +A +QW+     A H         F  L RC
Sbjct: 74  RLPGVPFVQADIADW---APTVAPDLIFANASLQWV-----AGH------AGLFARLMRC 119

Query: 151 LARGARAVFQIYPESVAQ------RELILGAAMRAGFA 182
           LA G     Q+ P+++ Q      REL   +A R   A
Sbjct: 120 LAPGGVLAVQM-PDNLDQPSHQLMRELASQSAWRDQLA 156

Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.

Acidovorax ebreus (strain TPSY) (taxid: 535289)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
225446283	291	PREDICTED: uncharacterized methyltransfe	1.0	1.0	0.869	1e-148
224060179	289	predicted protein [Populus trichocarpa]	0.993	1.0	0.845	1e-144
449465850	288	PREDICTED: uncharacterized methyltransfe	0.989	1.0	0.828	1e-139
255573584	291	conserved hypothetical protein [Ricinus	1.0	1.0	0.838	1e-137
224141671	289	predicted protein [Populus trichocarpa]	0.993	1.0	0.824	1e-137
356562133	290	PREDICTED: uncharacterized methyltransfe	0.996	1.0	0.800	1e-136
359806069	290	uncharacterized protein LOC100801198 [Gl	0.996	1.0	0.793	1e-135
297793249	289	hypothetical protein ARALYDRAFT_495827 [	0.993	1.0	0.797	1e-134
388496360	291	unknown [Lotus japonicus]	1.0	1.0	0.797	1e-132
15242087	289	S-adenosyl-L-methionine-dependent methyl	0.993	1.0	0.769	1e-130

>gi|225446283|ref|XP_002269268.1| PREDICTED: uncharacterized methyltransferase WBSCR22 [Vitis vinifera] gi|296090305|emb|CBI40124.3| unnamed protein product [Vitis vinifera]

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/291 (86%), Positives = 274/291 (94%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M++RPEL APPEIFYDDTEARKYTSSSRII+IQAKLSERALELLALPDDGVPRLLLDIGC
Sbjct: 1   MSSRPELQAPPEIFYDDTEARKYTSSSRIIEIQAKLSERALELLALPDDGVPRLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETLSENGHQWIGLDIS+SMLNIA ER+V+GDLLLGDMGQGLGLRPGV+DGAISI
Sbjct: 61  GSGLSGETLSENGHQWIGLDISESMLNIASERDVDGDLLLGDMGQGLGLRPGVIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SHEPRLRLKAFF SLYRCLARGARAV Q+YPE+VAQRELILG AMRAG
Sbjct: 121 SAVQWLCNADKSSHEPRLRLKAFFTSLYRCLARGARAVLQVYPENVAQRELILGFAMRAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           F+GGVVVD+PHS++SRKE+ VLTCGPPS+S+  PK K  D ESCSDDESSGDEEN+TV I
Sbjct: 181 FSGGVVVDFPHSTRSRKEYFVLTCGPPSLSTAVPKAKGEDGESCSDDESSGDEENQTVSI 240

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDRHRPRKKQKIT KG+GREW+LK+KE MRRKG  VPPDTKYTARKRKARF
Sbjct: 241 SDRHRPRKKQKITKKGRGREWILKRKEHMRRKGNTVPPDTKYTARKRKARF 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060179|ref|XP_002300071.1| predicted protein [Populus trichocarpa] gi|222847329|gb|EEE84876.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/291 (84%), Positives = 275/291 (94%), Gaps = 2/291 (0%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M+NRPEL+APPEIFYDD+EARKYTSSSRIIDIQA+LSERALELLALP DG+PRLLLDIGC
Sbjct: 1   MSNRPELLAPPEIFYDDSEARKYTSSSRIIDIQARLSERALELLALPVDGIPRLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETL+ENGHQWIGLD+SQSMLNIALEREVEGDLLLGDMGQGL LRPG++DGAISI
Sbjct: 61  GSGLSGETLTENGHQWIGLDVSQSMLNIALEREVEGDLLLGDMGQGLALRPGIIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SHEPRLRLKAFFGSLYRCLARGARAVFQ+YPE++AQRELIL +AM AG
Sbjct: 121 SAVQWLCNADKSSHEPRLRLKAFFGSLYRCLARGARAVFQMYPENIAQRELILRSAMHAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           FAGGVV+DYPHS+KSRKE+LVLTCGPPS+S+  P+GK  D ESCS+DE+S  EEN+ VCI
Sbjct: 181 FAGGVVIDYPHSAKSRKEYLVLTCGPPSLSTAVPRGKGEDGESCSEDENS--EENQMVCI 238

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDR+RP+KKQKIT KGKGR+W+ KKKEQ+RRKG AVPPDT+YT RKRKARF
Sbjct: 239 SDRNRPKKKQKITRKGKGRDWIFKKKEQLRRKGNAVPPDTRYTGRKRKARF 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465850|ref|XP_004150640.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Cucumis sativus] gi|449516429|ref|XP_004165249.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Cucumis sativus]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/291 (82%), Positives = 268/291 (92%), Gaps = 3/291 (1%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M +RPEL APPEIFY+D EARKYTSSSRII+IQAK+++RALELLALPDDGVPRLLLDIGC
Sbjct: 1   MTSRPELQAPPEIFYNDAEARKYTSSSRIIEIQAKITDRALELLALPDDGVPRLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETLSE+GHQWIGLDISQSMLN+ALERE +GDLLLGDMGQGLG+RPGVVDGAISI
Sbjct: 61  GSGLSGETLSEHGHQWIGLDISQSMLNVALERETDGDLLLGDMGQGLGIRPGVVDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SH PRLRLKAFF SLY+CLARGARAV Q+YPE+V QRELILG AMRAG
Sbjct: 121 SAVQWLCNADKSSHNPRLRLKAFFESLYKCLARGARAVLQVYPENVHQRELILGFAMRAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           FAGGVVVDYPHS++SRKE+LVLTCGPPSIS+  PKGK GD ESCSDD+ + D+EN+TV +
Sbjct: 181 FAGGVVVDYPHSARSRKEYLVLTCGPPSISATVPKGKDGDYESCSDDDIAEDDENQTVRM 240

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           +    PRK+QKIT +GKGREWVLKKKEQMRRKG  VPPD+KYTARKRKARF
Sbjct: 241 A---APRKRQKITKRGKGREWVLKKKEQMRRKGNIVPPDSKYTARKRKARF 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573584|ref|XP_002527716.1| conserved hypothetical protein [Ricinus communis] gi|223532906|gb|EEF34675.1| conserved hypothetical protein [Ricinus communis]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/291 (83%), Positives = 273/291 (93%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M+NRPEL+APPEIFYDD+EARKYTSSSRII+IQAKLSERA+ELLALP+DGVPRLLLDIGC
Sbjct: 1   MSNRPELLAPPEIFYDDSEARKYTSSSRIIEIQAKLSERAVELLALPEDGVPRLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETL+ENGHQWIGLDIS+SML+IALEREVEGDLLLGDMGQGL LRPGV+DGAISI
Sbjct: 61  GSGLSGETLTENGHQWIGLDISRSMLDIALEREVEGDLLLGDMGQGLALRPGVIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SHEP+LRLKAFFGSLYRCL RGARAVFQ+YPE++AQRELIL +AM +G
Sbjct: 121 SAVQWLCNADKSSHEPKLRLKAFFGSLYRCLGRGARAVFQVYPENLAQRELILRSAMHSG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           F+GGVVVDYPHS+KSRKE+LVLTCGPPSI++  P+GK  D ESCSD+E+S D EN+TV  
Sbjct: 181 FSGGVVVDYPHSTKSRKEYLVLTCGPPSINTAIPEGKGEDGESCSDEENSEDGENQTVRF 240

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDRHRPRKKQK + KGKGR+WVL+KKEQMR KG  VPPDTKYTARKRKARF
Sbjct: 241 SDRHRPRKKQKFSKKGKGRDWVLRKKEQMRSKGNIVPPDTKYTARKRKARF 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141671|ref|XP_002324188.1| predicted protein [Populus trichocarpa] gi|222865622|gb|EEF02753.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/291 (82%), Positives = 267/291 (91%), Gaps = 2/291 (0%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M+NRPEL+APPEIFYDD+EARKYTSSSRIIDIQA+LSERALELLAL  DG+PRLLLDIGC
Sbjct: 1   MSNRPELLAPPEIFYDDSEARKYTSSSRIIDIQARLSERALELLALSVDGIPRLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETL+ENGHQWIGLD+SQSMLNIALEREVEGDLLLGDMGQGL LRPG++DGAISI
Sbjct: 61  GSGLSGETLTENGHQWIGLDVSQSMLNIALEREVEGDLLLGDMGQGLALRPGIIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SHEPRLRLKAFFGSLYRCLARGARAVFQ+YPE++AQRELIL +AM AG
Sbjct: 121 SAVQWLCNADKSSHEPRLRLKAFFGSLYRCLARGARAVFQVYPENIAQRELILRSAMHAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           FAGGVV+DYPHS+KSRKE+LVLTCG PSIS+  P+GK  D    S  E    EEN+TVCI
Sbjct: 181 FAGGVVIDYPHSAKSRKEYLVLTCGVPSISTAVPRGKGED--GESCSEDESSEENQTVCI 238

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDR+RP+KKQKIT KGKG++W+ KKKEQ+RRKG AVPPDT+YT RKRKARF
Sbjct: 239 SDRNRPKKKQKITRKGKGKDWIFKKKEQLRRKGNAVPPDTRYTGRKRKARF 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562133|ref|XP_003549328.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Glycine max]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/291 (80%), Positives = 261/291 (89%), Gaps = 1/291 (0%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           MA+RPE+IAPPEIFYDD EARKYTSSSRI+ IQA LSERALELLALPDDGVP+LLLDIGC
Sbjct: 1   MASRPEVIAPPEIFYDDAEARKYTSSSRIVQIQATLSERALELLALPDDGVPKLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGET+SENGH WIGLDIS SMLN+A+EREVEGDLLLGDMGQG+G+RPGV+DGAISI
Sbjct: 61  GSGLSGETISENGHHWIGLDISASMLNVAVEREVEGDLLLGDMGQGIGIRPGVMDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SH PRLRLKAFF SLY+CL+ GARAVFQ+YPE++ QRELIL AAM AG
Sbjct: 121 SAVQWLCNADKSSHNPRLRLKAFFTSLYKCLSNGARAVFQVYPENIDQRELILNAAMHAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           FAGG+VVD+PHSSK RKEFLVLTCG  S+++   KGK  D ESCSDD+S  DEEN+TVCI
Sbjct: 181 FAGGIVVDFPHSSKKRKEFLVLTCGQCSVNASISKGKNEDGESCSDDDSE-DEENQTVCI 239

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDRHRPRKKQK    GKG+EW+L+KKEQMRR+G  VPP+TKYT RKRK RF
Sbjct: 240 SDRHRPRKKQKNNKVGKGKEWLLRKKEQMRRRGNVVPPNTKYTGRKRKDRF 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806069|ref|NP_001241182.1| uncharacterized protein LOC100801198 [Glycine max] gi|255642415|gb|ACU21471.1| unknown [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 258/291 (88%), Gaps = 1/291 (0%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           MA+RPE++APPEIFYDD EARKYTSSSRI+ IQA LSERALELLALPDD VP+LLLDIGC
Sbjct: 1   MASRPEVVAPPEIFYDDAEARKYTSSSRIVQIQATLSERALELLALPDDSVPKLLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETLSENGH WIGLDIS SMLN+A+EREVEGDLLLGDMGQGLG+RPGV+DGAISI
Sbjct: 61  GSGLSGETLSENGHHWIGLDISASMLNVAVEREVEGDLLLGDMGQGLGIRPGVIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SH PRLRLKAFF SLY+CL+ GARAVFQ+YPE++ QRELIL AAM AG
Sbjct: 121 SAVQWLCNADKSSHNPRLRLKAFFTSLYKCLSNGARAVFQVYPENIDQRELILNAAMHAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           FAGG+VVD+PHSSK RKEFLVLTCG  S++    KGK  D ESCSD++S  DEE +TVCI
Sbjct: 181 FAGGIVVDFPHSSKKRKEFLVLTCGQRSVNVSISKGKNEDRESCSDEDSE-DEEKQTVCI 239

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDRHRPRKKQK    GKG+EW+L+KKEQMRR+G  VPP+TKYT RKRK RF
Sbjct: 240 SDRHRPRKKQKNNKSGKGKEWLLRKKEQMRRRGNVVPPNTKYTGRKRKDRF 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793249|ref|XP_002864509.1| hypothetical protein ARALYDRAFT_495827 [Arabidopsis lyrata subsp. lyrata] gi|297310344|gb|EFH40768.1| hypothetical protein ARALYDRAFT_495827 [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 261/291 (89%), Gaps = 2/291 (0%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M+NRPEL+APPEIFYD+TEARKYTSSSRI++IQAKLSERALELLALP+DGVPR LLDIGC
Sbjct: 1   MSNRPELLAPPEIFYDETEARKYTSSSRIVEIQAKLSERALELLALPEDGVPRFLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETLSENGH WIGLDIS SMLN+A+EREVEGDLLLGDMGQGLGLR GV+DGAISI
Sbjct: 61  GSGLSGETLSENGHHWIGLDISASMLNVAVEREVEGDLLLGDMGQGLGLRSGVIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SHEPRLRLKAFFGSLYRCL+RGARAVFQ+YPE++AQRELIL  A++AG
Sbjct: 121 SAVQWLCNADKSSHEPRLRLKAFFGSLYRCLSRGARAVFQVYPENIAQRELILRQALQAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           F GG+VVDYPHS+K RKEFLVLTCGP   S +  K +    ESCS+D++S DEEN  V I
Sbjct: 181 FGGGLVVDYPHSTKKRKEFLVLTCGPVQTSIQTGKNEYD--ESCSEDDNSEDEENGEVGI 238

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDR+RPRKK++   +GKGREWVLKKKEQ RRKG  VP D+KYTARKRK+RF
Sbjct: 239 SDRNRPRKKRRTNKQGKGREWVLKKKEQSRRKGNNVPADSKYTARKRKSRF 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496360|gb|AFK36246.1| unknown [Lotus japonicus]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 260/291 (89%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           MA+RPE +APPEIFYDD+EARKYTSSSRII IQA LSERALELLALPDDGVP+LL+DIGC
Sbjct: 1   MASRPEFVAPPEIFYDDSEARKYTSSSRIIQIQASLSERALELLALPDDGVPKLLVDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETLSENGH WIGLDIS SMLN+ALEREVEGDLL+GDMGQGLGLRPGV+DGAISI
Sbjct: 61  GSGLSGETLSENGHHWIGLDISPSMLNVALEREVEGDLLVGDMGQGLGLRPGVIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SH PRLRLKAFF SLYRCL  GARAVFQ+YPE++ QRELIL AAM AG
Sbjct: 121 SAVQWLCNADKSSHNPRLRLKAFFTSLYRCLTNGARAVFQVYPENLDQRELILSAAMHAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           FAGG+VVD+PHSSK RKEFLVLTCG  S+++    GK GD ESCSDD++  DEEN+TVC+
Sbjct: 181 FAGGIVVDFPHSSKRRKEFLVLTCGQRSMNTSLSMGKDGDEESCSDDDNDEDEENQTVCV 240

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDRHRPRKKQK   +GKG+EW+++KK+QMRR+G  VP DTKYT RKRK RF
Sbjct: 241 SDRHRPRKKQKNNKRGKGKEWIMRKKDQMRRRGNVVPRDTKYTGRKRKDRF 291

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242087|ref|NP_200538.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|8777361|dbj|BAA96951.1| protein carboxyl methylase-like [Arabidopsis thaliana] gi|17529048|gb|AAL38734.1| putative protein carboxyl methylase [Arabidopsis thaliana] gi|20465285|gb|AAM20006.1| putative carboxyl methylase [Arabidopsis thaliana] gi|332009493|gb|AED96876.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/291 (76%), Positives = 258/291 (88%), Gaps = 2/291 (0%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M+NRPEL+APPEIFYDDTEARKYTSSSRI++IQAKLSERALELLALP+DGVPR LLDIGC
Sbjct: 1   MSNRPELLAPPEIFYDDTEARKYTSSSRIVEIQAKLSERALELLALPEDGVPRFLLDIGC 60

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI 120
           GSGLSGETLSE+GH WIGLDIS SML++A+EREVEGDLLLGDMGQGLGLR GV+DGAISI
Sbjct: 61  GSGLSGETLSEDGHHWIGLDISASMLHVAVEREVEGDLLLGDMGQGLGLRSGVIDGAISI 120

Query: 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
           SAVQWLCNADK+SHEPRLRLKAFFGSLYRCL+RGARAVFQ+YPE++AQRELIL  A++AG
Sbjct: 121 SAVQWLCNADKSSHEPRLRLKAFFGSLYRCLSRGARAVFQVYPENIAQRELILRQALQAG 180

Query: 181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240
           F GG+VVDYPHS+K RKEFLVLTCG    S +  K +    ESCS+D++S DEE+  V +
Sbjct: 181 FGGGLVVDYPHSTKKRKEFLVLTCGTVQTSIQTSKNEYD--ESCSEDDNSDDEESEEVGV 238

Query: 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
           SDR+RPRK+Q+   K KGREWVL+KKEQ RRKG  VP D+K+T+RKR+ RF
Sbjct: 239 SDRNRPRKRQRTNTKVKGREWVLRKKEQSRRKGKNVPADSKFTSRKRRTRF 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2165610	289	RID2 "root initiation defectiv	0.993	1.0	0.690	5.3e-104
UNIPROTKB|Q5ZI10	282	WBSCR22 "Uncharacterized prote	0.948	0.978	0.527	2.3e-71
FB|FBgn0037543	276	CG10903 [Drosophila melanogast	0.948	1.0	0.518	7.7e-71
MGI|MGI:1913388	281	Wbscr22 "Williams Beuren syndr	0.951	0.985	0.527	1.6e-70
ZFIN|ZDB-GENE-070410-68	282	wbscr22 "Williams Beuren syndr	0.948	0.978	0.524	2.1e-70
RGD|1589742	281	Wbscr22 "Williams Beuren syndr	0.951	0.985	0.527	2.6e-70
RGD|1597085	281	LOC360830 [Rattus norvegicus (	0.951	0.985	0.527	2.6e-70
DICTYBASE|DDB_G0269722	287	DDB_G0269722 "methyltransferas	0.972	0.986	0.472	5.1e-67
UNIPROTKB|C9K060	298	WBSCR22 "Uncharacterized methy	0.975	0.953	0.486	6.7e-65
UNIPROTKB|F1RJN0	281	WBSCR22 "Uncharacterized prote	0.945	0.978	0.503	6.7e-65

TAIR|locus:2165610 RID2 "root initiation defective 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 201/291 (69%), Positives = 232/291 (79%)

Query:     1 MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
             M+NRPEL+APPEIFYDDTEARKYTSSSRI++IQAKLSERALELLALP+DGVPR LLDIGC
Sbjct:     1 MSNRPELLAPPEIFYDDTEARKYTSSSRIVEIQAKLSERALELLALPEDGVPRFLLDIGC 60

Query:    61 GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISI 120
             GSGLSGETLSE+GH WIGLDIS SML++A+EREVE              R GV+DGAISI
Sbjct:    61 GSGLSGETLSEDGHHWIGLDISASMLHVAVEREVEGDLLLGDMGQGLGLRSGVIDGAISI 120

Query:   121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
             SAVQWLCNADK+SHEPRLRLKAFFGSLYRCL+RGARAVFQ+YPE++AQRELIL  A++AG
Sbjct:   121 SAVQWLCNADKSSHEPRLRLKAFFGSLYRCLSRGARAVFQVYPENIAQRELILRQALQAG 180

Query:   181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCI 240
             F GG+VVDYPHS+K RKEFLVLTCG    S +  K +                 +  V +
Sbjct:   181 FGGGLVVDYPHSTKKRKEFLVLTCGTVQTSIQTSKNEYDESCSEDDNSDDEE--SEEVGV 238

Query:   241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
             SDR+RPRK+Q+   K KGREWVL+KKEQ RRKG  VP D+K+T+RKR+ RF
Sbjct:   239 SDRNRPRKRQRTNTKVKGREWVLRKKEQSRRKGKNVPADSKFTSRKRRTRF 289

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=IMP

UNIPROTKB|Q5ZI10 WBSCR22 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 152/288 (52%), Positives = 191/288 (66%)

Query:     4 RPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSG 63
             RPE   PPE+FYD+TEARKYT +SR+ +IQA+++ RA+ELLALP+ G P LLLD+GCGSG
Sbjct:     7 RPEHRGPPELFYDETEARKYTQNSRVAEIQAQMAARAVELLALPE-GRPCLLLDVGCGSG 65

Query:    64 LSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISISAV 123
             LSGE +SE GH WIG+DIS++ML++A+EREVE              RPG  DG ISISAV
Sbjct:    66 LSGEHISEEGHCWIGVDISRAMLDVAVEREVEGDLLLADMGDGIPFRPGTFDGCISISAV 125

Query:   124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183
             QWLCNADK SH P  RL  FF +LY  LARG+RAV Q+YPE+  Q ELI   AMRAGF G
Sbjct:   126 QWLCNADKKSHSPPKRLYRFFSTLYTALARGSRAVLQLYPENSEQLELITAQAMRAGFTG 185

Query:   184 GVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCISDR 243
             G+V+DYP+S+K++K FL L  G    S   PKG +G                  +    R
Sbjct:   186 GMVIDYPNSAKAKKFFLCLFVGA---SGTLPKG-LGTECADGEEIHQAKFTQERI----R 237

Query:   244 HRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
              R  K + +    K R+W+L+KKE+ RR+G  V  DTKYT RKR+ +F
Sbjct:   238 FRNAKGKSVK---KSRDWILEKKERRRRQGKEVRADTKYTGRKRRPQF 282

GO:0008168 "methyltransferase activity" evidence=IEA

FB|FBgn0037543 CG10903 [Drosophila melanogaster (taxid:7227)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 151/291 (51%), Positives = 192/291 (65%)

Query:     1 MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
             MA RPE  APPEIFY+D EA+KY++++RII+IQ +++ERALELLALPDD   RL+LDIGC
Sbjct:     1 MARRPEHSAPPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDDESRLILDIGC 60

Query:    61 GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISI 120
             GSGLSG  L ++ H WIG+DIS+SML+IA+EREV               +PG  DGAISI
Sbjct:    61 GSGLSGSVLEDSEHMWIGIDISKSMLDIAVEREVAGDVILGDMGEGMPFKPGTFDGAISI 120

Query:   121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180
             SA+QWLCNADK+ H P  RL  FF +L+ CL R ARAVFQ YPE+  Q E++   AM+AG
Sbjct:   121 SALQWLCNADKSYHNPHKRLLKFFTTLFSCLTRTARAVFQFYPENSDQIEMVTSQAMKAG 180

Query:   181 FAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCI 240
             F GG+VVDYP+S+K++K +LVL  G    S+E P+  +G                R  C 
Sbjct:   181 FYGGLVVDYPNSAKAKKYYLVLMTGG---SAELPQA-LGSPEEERRVNYIK---KRDACR 233

Query:   241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
               R +  KK         R+W+L KKE+ RR+G    PDTKYTARKR  +F
Sbjct:   234 EARGKAPKKS--------RDWILAKKERRRRQGLETRPDTKYTARKRSGKF 276

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:1913388 Wbscr22 "Williams Beuren syndrome chromosome region 22" [Mus musculus (taxid:10090)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 153/290 (52%), Positives = 187/290 (64%)

Query:     2 ANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCG 61
             + RPE   PPE+FYD  EARKY  +SR+IDIQ K++ERALELL LP+ G P  LLDIGCG
Sbjct:     5 SRRPEHSGPPELFYDQNEARKYVRNSRMIDIQTKMTERALELLCLPE-GQPSYLLDIGCG 63

Query:    62 SGLSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISIS 121
             SGLSG+ +SE GH W+G+DIS +ML+ AL+R+ E              RPG  DG ISIS
Sbjct:    64 SGLSGDYISEEGHYWVGIDISPAMLDAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISIS 123

Query:   122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
             AVQWLCNA+K S  P  RL  FF SLY  L RGARAV Q+YPE+  Q ELI   A RAGF
Sbjct:   124 AVQWLCNANKKSDVPARRLYCFFSSLYSALVRGARAVLQLYPENSEQLELITTQATRAGF 183

Query:   182 AGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCIS 241
              GGVVVD+P+S+K++K +L L  GP   S+  PKG                  + ++  S
Sbjct:   184 TGGVVVDFPNSAKAKKFYLCLFSGP---STSLPKG--------LTESQDADQASESMFTS 232

Query:   242 DRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
             +R  P KK +     K REWVL+KKE+ RR+G  V PDT+YT RKRK RF
Sbjct:   233 ER-APHKKARRDLVKKSREWVLEKKERRRRQGKEVRPDTQYTGRKRKPRF 281

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

ZFIN|ZDB-GENE-070410-68 wbscr22 "Williams Beuren syndrome chromosome region 22" [Danio rerio (taxid:7955)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 151/288 (52%), Positives = 191/288 (66%)

Query:     4 RPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSG 63
             RPE +APPE+FY++ EA+KY+ +SR+I+IQ ++SERA+ELL LP+D  P  LLD+GCGSG
Sbjct:     7 RPEHMAPPEVFYNEEEAKKYSQNSRMIEIQTQMSERAVELLNLPEDQ-PCYLLDVGCGSG 65

Query:    64 LSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISISAV 123
             LSG+ LSE GH W+G+DIS +ML++ALEREVE              RPG+ DG ISISA+
Sbjct:    66 LSGDYLSEAGHYWVGVDISTAMLDVALEREVEGDLLLGDMGEGMPFRPGMFDGCISISAL 125

Query:   124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183
             QWLCNADK +H P  RL  FF +LY  LARGARAVFQIYPE+  Q ELI   AM+AGF G
Sbjct:   126 QWLCNADKKTHSPPKRLYRFFSTLYSSLARGARAVFQIYPENSEQLELITAQAMKAGFTG 185

Query:   184 GVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCISDR 243
             G+VVDYP+SSK++K FL L  G   +S   PKG                  N+    + R
Sbjct:   186 GMVVDYPNSSKAKKFFLCLFAG---VSGVLPKG-------LDSETAVRGVVNQAQFTAQR 235

Query:   244 HRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
              R  K  K  +  K ++W+L KKE+ RR+G  V  DTKYT R RK +F
Sbjct:   236 SR-FKNMKGKSAKKSKDWILDKKERRRRQGKDVRADTKYTGRHRKPKF 282

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1589742 Wbscr22 "Williams Beuren syndrome chromosome region 22" [Rattus norvegicus (taxid:10116)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 153/290 (52%), Positives = 186/290 (64%)

Query:     2 ANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCG 61
             + RPE   PPE+FYD  EARKY  +SR+IDIQ K++ERALELL LP+ G P  LLDIGCG
Sbjct:     5 SRRPEHSGPPELFYDQNEARKYVRNSRMIDIQTKMTERALELLCLPE-GQPSYLLDIGCG 63

Query:    62 SGLSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISIS 121
             SGLSG+ +SE GH W+G+DIS +ML+ AL+R+ E              RPG  DG ISIS
Sbjct:    64 SGLSGDYISEEGHYWVGIDISPAMLDAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISIS 123

Query:   122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
             AVQWLCNA+K S  P  RL  FF SLY  L RGARAV Q+YPE+  Q ELI   A RAGF
Sbjct:   124 AVQWLCNANKKSDIPARRLYCFFSSLYSALVRGARAVLQLYPENSEQLELITTQATRAGF 183

Query:   182 AGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCIS 241
              GGVVVD+P+S+K++K +L L  GP   S+  PKG                  + +   S
Sbjct:   184 TGGVVVDFPNSAKAKKFYLCLFSGP---STSLPKG--------LTESQEADQASESAFTS 232

Query:   242 DRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
             +R  P KK +     K REWVL+KKE+ RR+G  V PDT+YT RKRK RF
Sbjct:   233 ER-APHKKARRDLVKKSREWVLEKKERRRRQGKEVRPDTQYTGRKRKPRF 281

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1597085 LOC360830 [Rattus norvegicus (taxid:10116)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 153/290 (52%), Positives = 186/290 (64%)

Query:     2 ANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCG 61
             + RPE   PPE+FYD  EARKY  +SR+IDIQ K++ERALELL LP+ G P  LLDIGCG
Sbjct:     5 SRRPEHSGPPELFYDQNEARKYVRNSRMIDIQTKMTERALELLCLPE-GQPSYLLDIGCG 63

Query:    62 SGLSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISIS 121
             SGLSG+ +SE GH W+G+DIS +ML+ AL+R+ E              RPG  DG ISIS
Sbjct:    64 SGLSGDYISEEGHYWVGIDISPAMLDAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISIS 123

Query:   122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
             AVQWLCNA+K S  P  RL  FF SLY  L RGARAV Q+YPE+  Q ELI   A RAGF
Sbjct:   124 AVQWLCNANKKSDIPARRLYCFFSSLYSALVRGARAVLQLYPENSEQLELITTQATRAGF 183

Query:   182 AGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCIS 241
              GGVVVD+P+S+K++K +L L  GP   S+  PKG                  + +   S
Sbjct:   184 TGGVVVDFPNSAKAKKFYLCLFSGP---STSLPKG--------LTESQEADQASESAFTS 232

Query:   242 DRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
             +R  P KK +     K REWVL+KKE+ RR+G  V PDT+YT RKRK RF
Sbjct:   233 ER-APHKKARRDLVKKSREWVLEKKERRRRQGKEVRPDTQYTGRKRKPRF 281

GO:0008168 "methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0269722 DDB_G0269722 "methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 138/292 (47%), Positives = 194/292 (66%)

Query:     3 NRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
             +RPE IAPPEIFYDD E++KY+S+SRII+IQ K++ERA ELLA+P+     +LLDIGCGS
Sbjct:     2 SRPEHIAPPEIFYDDVESKKYSSNSRIIEIQTKMAERAYELLAIPETAEGLMLLDIGCGS 61

Query:    63 GLSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISISA 122
             G+SG+ +++ GH WIG DISQ ML++A++REVE              R G  D AISISA
Sbjct:    62 GISGDVITDAGHYWIGCDISQHMLDVAIDREVEGDVMLRDIGQGFPFRAGSFDAAISISA 121

Query:   123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA 182
             +QWLCNA+K+ H PR RL  FF SL+  L RG +A+ Q YPE+ AQ E+I  +A+R GF+
Sbjct:   122 IQWLCNAEKSHHNPRKRLHTFFQSLFNVLTRGGKAILQFYPENSAQIEMITASALRCGFS 181

Query:   183 GGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCISD 242
             GG+++D+P+SSK++K FLVL  G  +I   A KG  G               +  V  S+
Sbjct:   182 GGLLIDFPNSSKAKKYFLVLFTGNNNIMPSA-KGVEGEEYEQQEEED-----SNEVKYSN 235

Query:   243 RHRPRK---KQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
             R R R+   K K + + K +EW++ KK++ R++G  +  D+K++ RKR  +F
Sbjct:   236 RKRDRRRVTKSKGSAQHKTKEWIMNKKDRQRKQGREIKNDSKFSGRKRGPKF 287

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|C9K060 WBSCR22 "Uncharacterized methyltransferase WBSCR22" [Homo sapiens (taxid:9606)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 144/296 (48%), Positives = 187/296 (63%)

Query:     4 RPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSG 63
             RPE   PPE+FYD+TEARKY  +SR+IDIQ +++ RALELL LP++  P  LLDIGCG+G
Sbjct:     7 RPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENK-PCYLLDIGCGTG 65

Query:    64 LSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISISAV 123
             LSG  LS+ GH W+GLDIS +ML+ A++RE+E              +PG  DG ISISAV
Sbjct:    66 LSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCISISAV 125

Query:   124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183
             QWLCNA+K S  P  RL  FF SL+  L RG+RAV Q+YPE+  Q ELI   A +AGF+G
Sbjct:   126 QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKAGFSG 185

Query:   184 GVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCISDR 243
             G+VVDYP+S+K++K +L L  GP   S+  P+G                          R
Sbjct:   186 GMVVDYPNSAKAKKFYLCLFSGP---STFIPEGLSENQDEVEPRESVFTNEREGGAFERR 242

Query:   244 ----HRPRK-KQKITNKG---KGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
                 H+ R+   +++ +G   K R WVL+KKE+ RR+G  V PDT+YT RKRK RF
Sbjct:   243 GIRGHQTRRFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF 298

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1RJN0 WBSCR22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 145/288 (50%), Positives = 179/288 (62%)

Query:     4 RPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSG 63
             RPE   PPE+FYD  EARKY  +SR+ID+Q K++ RALELL LP+D  P  LLDIGCGSG
Sbjct:     7 RPEHSGPPELFYDKNEARKYVRNSRMIDVQTKMAGRALELLHLPEDQ-PCYLLDIGCGSG 65

Query:    64 LSGETLSENGHQWIGLDISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISISAV 123
             LSG+ LS+ GH W+G+DIS +ML+ AL+R+                +PG  DG ISISAV
Sbjct:    66 LSGDYLSDEGHYWVGIDISPAMLDAALDRDTSGDLLLGDMGQGIPFKPGSFDGCISISAV 125

Query:   124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183
             QWLCNA+K S  P  RL  FF SLY  L RGARAV Q+YPE+  Q ELI   A +AGF G
Sbjct:   126 QWLCNANKKSDIPAKRLYCFFSSLYAVLVRGARAVLQLYPENSEQLELITTQATKAGFTG 185

Query:   184 GVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGXXXXXXXXXXXXXXXNRTVCISDR 243
             GVVVDYP+S+K++K +L L  GP   S+  PKG                   R    +  
Sbjct:   186 GVVVDYPNSAKAKKFYLCLFSGP---SAFLPKG---------LSEDNEEEEPRESTFTAE 233

Query:   244 HRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291
               P +  +     K REWVL+KKE+ RR+G  V PDT+YT R+RK RF
Sbjct:   234 RVPFRMARRGVVRKSREWVLEKKERRRRQGKEVRPDTQYTGRRRKPRF 281

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55DA6	WBS22_DICDI	2, ., 1, ., 1, ., -	0.5034	0.9725	0.9860	yes	no
Q58DP0	WBS22_BOVIN	2, ., 1, ., 1, ., -	0.5381	0.9450	0.9786	yes	no
P25627	BUD23_YEAST	2, ., 1, ., 1, ., -	0.4896	0.9381	0.9927	yes	no
O43709	WBS22_HUMAN	2, ., 1, ., 1, ., -	0.5451	0.9450	0.9786	yes	no
Q10162	YAU6_SCHPO	No assigned EC number	0.4707	0.9106	0.9888	yes	no
Q9CY21	WBS22_MOUSE	2, ., 1, ., 1, ., -	0.5689	0.9518	0.9857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_I2221	hypothetical protein (289 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.523
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.495
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.489
	grail3.0101007501	hypothetical protein (229 aa)				•					0.480
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•					0.468
	eugene3.00090493	hypothetical protein (840 aa)				•			•		0.455
	gw1.170.45.1	SubName- Full=Putative uncharacterized protein; (274 aa)				•					0.449
	grail3.0014005501	hypothetical protein (429 aa)				•	•				0.448
	fgenesh4_pm.C_LG_V000540	hypothetical protein (491 aa)				•			•		0.431
	gw1.146.82.1	SubName- Full=Putative uncharacterized protein; (417 aa)				•	•				0.429

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam12589	85	pfam12589, WBS_methylT, Methyltransferase involved	2e-25
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-11
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	1e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-09
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-08
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	8e-07
COG4976	287	COG4976, COG4976, Predicted methyltransferase (con	2e-06
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-05
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-05
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-05
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	8e-05
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	8e-05
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	1e-04
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	3e-04
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	5e-04
PRK01683	258	PRK01683, PRK01683, trans-aconitate 2-methyltransf	7e-04
PRK11088	272	PRK11088, rrmA, 23S rRNA methyltransferase A; Prov	0.001
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	0.002
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	0.002
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	0.003
COG4106	257	COG4106, Tam, Trans-aconitate methyltransferase [G	0.003
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	0.004
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.004

>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome

 Score = 96.6 bits (241), Expect = 2e-25
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 202 LTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREW 261
           LT G PS+  + P G   + E   +      + ++   IS R+R +KK+K   K K +EW
Sbjct: 1   LTAGGPSVPEQLPNGLGEEGEEDDEQI----DASKVRRISQRNRRKKKKKKKLKKKSKEW 56

Query: 262 VLKKKEQMRRKGCAVPPDTKYTARKRKAR 290
           +L+KKEQMRR+G  V PD+KYT RKR+ R
Sbjct: 57  ILRKKEQMRRRGKEVKPDSKYTGRKRRPR 85

This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with pfam08241. This family is made up of S-adenosylmethionine-dependent methyltransferases. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype. Length = 85

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 14/105 (13%)

Query: 56  LDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114
           LD+GCG+GL  E L+   G +  G+D+S  ML +A +R      ++GD  + L       
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRA-PRKFVVGDA-EDLPFPDESF 58

Query: 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
           D  +S   +  L + ++A              + R L  G + V 
Sbjct: 59  DVVVSSLVLHHLPDPERA-----------LREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 40  ALELLALPDDG---VPRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREV 94
           A  LLAL  +    +P  +LDIGCG+G     L +     ++I  DIS  ML  A  +  
Sbjct: 20  AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS 79

Query: 95  EGDL-LLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLAR 153
           E    + GD  + L L     D  +S  A+QW  +           L      L R L  
Sbjct: 80  ENVQFICGDAEK-LPLEDSSFDLIVSNLALQWCDD-----------LSQALSELARVLKP 127

Query: 154 GARAVFQIY 162
           G    F  +
Sbjct: 128 GGLLAFSTF 136

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 55  LLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEG-----DLLLGDMGQGLG 108
           +LD+GCG+G     L+   G +  G+DIS   L +A +          ++L GD  +   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162
                 D  IS   +  L             L  F     R L  G   V  + 
Sbjct: 62  EADESFDVIISDPPLHHLV----------EDLARFLEEARRLLKPGGVLVLTLV 105

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 38  ERALELLAL-PDDGVPRLLLDIGCGSG-----LSGETLSENGHQWIGLDISQSMLNIALE 91
            R  ELLA+ P D V    LD+GCG G     L+     E G   +G+D S++ML +A E
Sbjct: 9   ARTFELLAVQPGDRV----LDVGCGPGNDARELARRVGPE-GRV-VGIDRSEAMLALAKE 62

Query: 92  REVEG----DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSL 147
           R        + + GD   GL    G  D   S   +Q L +  +A  E           +
Sbjct: 63  RAAGLGPNVEFVRGD-ADGLPFPDGSFDAVRSDRVLQHLEDPARALAE-----------I 110

Query: 148 YRCLARGARAV 158
            R L  G R V
Sbjct: 111 ARVLRPGGRVV 121

Length = 241

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 15/128 (11%)

Query: 34  AKLSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE 91
           A+L  ++ + L   LP      +L D GCG G       E G Q   LD+S  ML  A +
Sbjct: 24  AELQRQSADALLAMLPQRKFTHVL-DAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ 82

Query: 92  REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCL 151
           ++     L GD+ + L L     D A S  AVQW C            L      LYR +
Sbjct: 83  KDAADHYLAGDI-ESLPLATATFDLAWSNLAVQW-CGN----------LSTALRELYRVV 130

Query: 152 ARGARAVF 159
             G    F
Sbjct: 131 RPGGVVAF 138

Length = 251

>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 42  ELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLG 101
           E++   D G  R +LD+GCG+GL+GE L +   +  G+DIS++ML  A E+ +   L + 
Sbjct: 116 EMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVA 175

Query: 102 D 102
           +
Sbjct: 176 E 176

Length = 287

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 56  LDIGCGSGLSGETLSENGHQW--IGLDISQSMLNIALEREVEGDLLLGDM-----GQGLG 108
           LDIGCG+G     L E        G+DIS + L  A ER     LL            + 
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR 156
           L PG  D  ++ + +  L  AD          +A   +L R L  G  
Sbjct: 61  LDPGSFDVVVASNVLHHL--ADP---------RAVLRNLRRLLKPGGV 97

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 55 LLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER 92
          +LD+GCG+G     L+  G     G+DIS+  L +A ER
Sbjct: 1  ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKER 39

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 27/113 (23%), Positives = 35/113 (30%), Gaps = 22/113 (19%)

Query: 55  LLDIGCGSGLSGETLSENGHQW--IGLDISQSMLNIALEREVEG-----DLLLGDMGQGL 107
           +LDIGCG+G     L+         G+D+S  ML +A E            + GD    L
Sbjct: 5   VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDAL 64

Query: 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160
            L  G  D                        L     +L   L  G R V  
Sbjct: 65  DLLEG-FDAVFIGGGGGD--------------LLELLDALASLLKPGGRLVLN 102

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 42  ELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW--IGLDISQSMLNIALEREVEGDL 98
            L++L        +LD+ CG+G     L+++      +GLDIS+SML +A E+  +  +
Sbjct: 42  ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV 100

Length = 238

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 17 DTEARKYTSSSRIIDIQAKLSE-----RALELLALPDDGVPRL-LLDIGCGSGLSGETLS 70
             AR Y S   +  ++  + E     R   L  LP D +    +LD GCG+GL    L+
Sbjct: 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA 74

Query: 71 ENGHQWIGLDISQSMLNIALER 92
          + G     +DIS+ M+ +A  R
Sbjct: 75 KRGAIVKAVDISEQMVQMARNR 96

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 32  IQAKLSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
            + +       LLA  LP       +LDIGCG+G+    L E G    G+D S + + I 
Sbjct: 1   YRRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIF 60

Query: 90  LEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR 149
              +     +L           G  D   +   ++ L        +P     A    L  
Sbjct: 61  SLFDAPDPAVLA----------GKYDLITAFEVLEHL-------PDPP----ALLQQLRE 99

Query: 150 CLARGARAVFQ 160
            L  G   +  
Sbjct: 100 LLKPGGVLLIS 110

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.0 bits (93), Expect = 3e-04
 Identities = 33/142 (23%), Positives = 44/142 (30%), Gaps = 7/142 (4%)

Query: 20  ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGET--LSENGHQWI 77
            R        + +  +L +  L L  L        +LDIGCG+G       L   G   +
Sbjct: 17  DRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVV 76

Query: 78  GLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPR 137
           G+D+S  ML +A  R     L L D      L      G +                   
Sbjct: 77  GVDLSPEMLALARARAEGAGLGLVDFVVADAL-----GGVLPFEDSASFDLVISLLVLHL 131

Query: 138 LRLKAFFGSLYRCLARGARAVF 159
           L        L R L  G R V 
Sbjct: 132 LPPAKALRELLRVLKPGGRLVL 153

Length = 257

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
          +LD+GCG GL  E L+  G    G+D S+  + +A
Sbjct: 49 VLDVGCGGGLLSEPLARLGANVTGIDASEENIEVA 83

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|234970 PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 13/108 (12%)

Query: 38  ER---ALELLA-LPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALE 91
           ER   A +LLA +P +  PR ++D+GCG G S E L E     +  G+D S +ML  A  
Sbjct: 15  ERTRPARDLLARVPLEN-PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARS 73

Query: 92  REVEGDLLLGDMGQGLGLRPGVVDGAISISAV-QWLCNADKASHEPRL 138
           R  +   +  D+      +P      I  +A  QWL   D     PRL
Sbjct: 74  RLPDCQFVEADIAS---WQPPQALDLIFANASLQWL--PDHLELFPRL 116

Length = 258

>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 36  LSERALELLALPDDGVPRLLLDIGCGSG-----LSGETLSENGHQWIGLDISQSMLNIAL 90
           L +    LLA   D     LLDIGCG G     L+         Q  GLDIS+  +  A 
Sbjct: 70  LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA 129

Query: 91  ER 92
           +R
Sbjct: 130 KR 131

Length = 272

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 28/138 (20%)

Query: 33  QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALE 91
           +AKL +  LE L L   G+   LLDIGCG G      +E  G   +G+ +S+  L  A +
Sbjct: 58  RAKL-DLILEKLGL-KPGMT--LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK 113

Query: 92  R-EVEG-----DLLLGDMGQGLGLR--PGVVDGAISISAVQWLCNADKASHEPRLRLKAF 143
           R    G     ++ L D       R      D  +S+   +         H  +     F
Sbjct: 114 RIAARGLEDNVEVRLQDY------RDFEEPFDRIVSVGMFE---------HVGKENYDDF 158

Query: 144 FGSLYRCLARGARAVFQI 161
           F  +Y  L  G R +   
Sbjct: 159 FKKVYALLKPGGRMLLHS 176

Length = 283

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 46  LPDDGVP--RLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
           LP DG      +LD GCG G     L+  G + +  DIS  M+  A ER
Sbjct: 56  LPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARER 104

Length = 230

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
          +LD+GCG G+  E+++  G    G+D S+  + +A
Sbjct: 52 VLDVGCGGGILSESMARLGADVTGIDASEENIEVA 86

Length = 233

>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 40  ALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGD 97
           A +LLA      PR ++D+GCG G S E L+         G+D S +ML  A +R  +  
Sbjct: 19  ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDAT 78

Query: 98  LLLGDMGQGLGLRPGVVDGAISISAVQWL 126
               D+      +P   D   + + +QWL
Sbjct: 79  FEEADLRTWKPEQP--TDLLFANAVLQWL 105

Length = 257

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 55 LLDIGCGSGLSGETLSENGH---QWIGLDISQSMLNIALER 92
          +LD+ CG+G     L++      + +GLD S+ ML +  E+
Sbjct: 55 VLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREK 95

Length = 239

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 55  LLDIGCGSGLSGETLSE---NGHQWIGLDISQSMLNIALEREVEGDL-----LLGDMG-- 104
           +LD+GCG+G     L+E    G + +G+DIS+  +  A E   +        + GD+   
Sbjct: 7   VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEEL 66

Query: 105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164
             L L     D  IS   +  L + DK   E    LK   G L          +  +  +
Sbjct: 67  PQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLK-PGGVLIVSDPVLLSELPALLED 125

Query: 165 S 165
            
Sbjct: 126 L 126

This family appears to be have methyltransferase activity. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	100.0
PF12589	87	WBS_methylT: Methyltransferase involved in William	99.89
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.85
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.83
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.83
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.81
PLN02244	340	tocopherol O-methyltransferase	99.79
PLN02490	340	MPBQ/MSBQ methyltransferase	99.78
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.77
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.77
KOG2361	264	consensus Predicted methyltransferase [General fun	99.77
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.75
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.75
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.75
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.74
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.74
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.73
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.71
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.7
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.7
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.7
PLN02336	475	phosphoethanolamine N-methyltransferase	99.7
PRK05785	226	hypothetical protein; Provisional	99.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.69
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.69
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.69
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.68
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.68
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.68
PRK11207	197	tellurite resistance protein TehB; Provisional	99.68
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.67
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.66
PRK08317	241	hypothetical protein; Provisional	99.66
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.66
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.65
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.65
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.65
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.64
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.64
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.62
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.61
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.61
PLN02336	475	phosphoethanolamine N-methyltransferase	99.6
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.6
COG4123	248	Predicted O-methyltransferase [General function pr	99.6
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.6
PRK12335	287	tellurite resistance protein TehB; Provisional	99.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.59
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.59
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.58
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.57
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.57
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.56
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.56
TIGR03438	301	probable methyltransferase. This model represents	99.56
PRK04266	226	fibrillarin; Provisional	99.55
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.55
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.54
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.54
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.54
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.54
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.54
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.54
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.53
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.52
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.51
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.51
PRK06922	677	hypothetical protein; Provisional	99.51
PRK06202	232	hypothetical protein; Provisional	99.5
PRK14967	223	putative methyltransferase; Provisional	99.5
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.5
PRK14968	188	putative methyltransferase; Provisional	99.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.5
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.49
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.48
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.48
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.47
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.47
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.47
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.47
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.47
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.47
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.46
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.45
TIGR00438	188	rrmJ cell division protein FtsJ.	99.44
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.44
PRK07402	196	precorrin-6B methylase; Provisional	99.44
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.43
PTZ00146	293	fibrillarin; Provisional	99.43
PHA03411	279	putative methyltransferase; Provisional	99.43
KOG3010	261	consensus Methyltransferase [General function pred	99.42
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.42
COG2890	280	HemK Methylase of polypeptide chain release factor	99.41
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.4
KOG2940	325	consensus Predicted methyltransferase [General fun	99.4
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.38
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.37
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.36
KOG1271	227	consensus Methyltransferases [General function pre	99.36
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.35
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.34
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.34
KOG4300	252	consensus Predicted methyltransferase [General fun	99.34
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.34
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
PRK00811	283	spermidine synthase; Provisional	99.33
PLN03075	296	nicotianamine synthase; Provisional	99.31
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.3
PLN02672	1082	methionine S-methyltransferase	99.3
PRK04457	262	spermidine synthase; Provisional	99.29
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.28
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.27
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.27
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.25
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.25
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.24
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.24
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.23
PHA03412	241	putative methyltransferase; Provisional	99.22
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.22
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.21
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.21
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.2
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.2
KOG2904	328	consensus Predicted methyltransferase [General fun	99.19
PRK01581	374	speE spermidine synthase; Validated	99.19
PRK03612	521	spermidine synthase; Provisional	99.18
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.18
KOG2899	288	consensus Predicted methyltransferase [General fun	99.15
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.13
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.13
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.13
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.13
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.12
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.09
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.08
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.08
PLN02366	308	spermidine synthase	99.06
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.04
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.04
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.03
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.01
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.01
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.98
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.97
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.97
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.96
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.96
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.94
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PRK04148	134	hypothetical protein; Provisional	98.89
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.89
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.87
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.86
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.86
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.85
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.81
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.81
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.79
COG2521	287	Predicted archaeal methyltransferase [General func	98.79
PLN02823	336	spermine synthase	98.78
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.77
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.76
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.74
PLN02476	278	O-methyltransferase	98.73
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.73
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.73
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.72
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.72
COG4122	219	Predicted O-methyltransferase [General function pr	98.71
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.69
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.69
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.67
KOG1331	293	consensus Predicted methyltransferase [General fun	98.66
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.65
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.64
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.63
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.6
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.58
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.55
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.55
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.55
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.54
PRK00536	262	speE spermidine synthase; Provisional	98.53
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.53
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.52
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.51
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.5
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.46
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.45
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.45
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.45
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.45
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.43
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.42
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.41
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.39
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.38
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.37
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.37
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.37
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.36
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.33
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.31
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.3
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.29
COG2520	341	Predicted methyltransferase [General function pred	98.26
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.23
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.22
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.21
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.2
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.18
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.14
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.14
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.12
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.11
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.11
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.1
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.07
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.05
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.01
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.96
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.95
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.95
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.89
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.88
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.84
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.77
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.74
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.74
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.71
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.71
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.71
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.67
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.56
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.54
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.52
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.51
COG4301	321	Uncharacterized conserved protein [Function unknow	97.51
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.47
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.45
COG3897	218	Predicted methyltransferase [General function pred	97.45
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.41
PF13679	141	Methyltransf_32: Methyltransferase domain	97.37
COG4076	252	Predicted RNA methylase [General function predicti	97.36
PRK10742	250	putative methyltransferase; Provisional	97.31
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.29
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.08
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.05
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.04
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.03
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.0
KOG3115	249	consensus Methyltransferase-like protein [General	96.93
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.91
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.9
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.9
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.89
PRK11524	284	putative methyltransferase; Provisional	96.89
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.89
COG4798	238	Predicted methyltransferase [General function pred	96.87
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.86
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.8
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.72
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.71
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.7
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.66
COG0286	489	HsdM Type I restriction-modification system methyl	96.59
KOG2730	263	consensus Methylase [General function prediction o	96.58
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.51
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.47
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.35
PRK13699	227	putative methylase; Provisional	96.33
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.27
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.27
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.04
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.74
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.72
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.59
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.23
PHA01634	156	hypothetical protein	95.18
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.17
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.97
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.89
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.78
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.78
KOG2920	282	consensus Predicted methyltransferase [General fun	94.78
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	94.62
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.53
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	94.48
PRK13699	227	putative methylase; Provisional	94.43
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.43
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.4
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.4
PRK10458	467	DNA cytosine methylase; Provisional	94.32
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.16
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.06
PF03269	177	DUF268: Caenorhabditis protein of unknown function	93.98
COG1565	370	Uncharacterized conserved protein [Function unknow	93.84
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	93.66
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.64
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.4
PRK11524	284	putative methyltransferase; Provisional	93.01
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	92.81
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.54
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.49
COG1255	129	Uncharacterized protein conserved in archaea [Func	92.21
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.21
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	91.69
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.6
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.22
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.0
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.95
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	90.67
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.56
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.89
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	89.87
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	89.8
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.8
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	89.79
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	89.78
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.75
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	89.43
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.2
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.16
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.03
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.87
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	88.46
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.43
PLN02586	360	probable cinnamyl alcohol dehydrogenase	87.98
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	87.53
COG0863	302	DNA modification methylase [DNA replication, recom	87.14
PLN02740	381	Alcohol dehydrogenase-like	87.04
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	86.94
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	86.72
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	86.17
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	85.97
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	85.95
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	85.86
PRK07417	279	arogenate dehydrogenase; Reviewed	85.77
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	85.74
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.37
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	85.16
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	85.07
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	84.99
PLN02514	357	cinnamyl-alcohol dehydrogenase	84.91
PRK08267	260	short chain dehydrogenase; Provisional	84.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	84.66
KOG2352	482	consensus Predicted spermine/spermidine synthase [	84.58
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	84.57
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.84
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	83.41
PLN02827	378	Alcohol dehydrogenase-like	83.26
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	83.01
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	82.82
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	82.57
PRK08265	261	short chain dehydrogenase; Provisional	82.49
PRK09496	453	trkA potassium transporter peripheral membrane com	82.48
PRK12829	264	short chain dehydrogenase; Provisional	82.33
KOG1227	351	consensus Putative methyltransferase [General func	82.14
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.94
PRK09072	263	short chain dehydrogenase; Provisional	81.76
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	81.68
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	81.46
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	81.35
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	81.32
PRK05872	296	short chain dehydrogenase; Provisional	81.18
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	81.13
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	80.92
PRK06701	290	short chain dehydrogenase; Provisional	80.85
COG3315	297	O-Methyltransferase involved in polyketide biosynt	80.78
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	80.68
PLN02494	477	adenosylhomocysteinase	80.54
PRK10083	339	putative oxidoreductase; Provisional	80.46
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	80.33
PRK07063	260	short chain dehydrogenase; Provisional	80.15

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=100.00  E-value=1.9e-75  Score=493.42  Aligned_cols=270  Identities=59%  Similarity=0.982  Sum_probs=245.3

Q ss_pred             CCCCCCCCCCCcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEe
Q 043626            1 MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLD   80 (291)
Q Consensus         1 m~~~pe~~~ppe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvD   80 (291)
                      |..||||.+|||+||||.+|.+|++++++..||.+|+++++++|+++.+ .+..|||||||||.++..|.+.||.|+|+|
T Consensus         1 m~~rPEh~~PpelfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvD   79 (270)
T KOG1541|consen    1 MSVRPEHGAPPELFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGP-KSGLILDIGCGSGLSGSVLSDSGHQWIGVD   79 (270)
T ss_pred             CCcCccccCCcceeechhhhhhccccceeeeehHHHHHHHHHHhhCCCC-CCcEEEEeccCCCcchheeccCCceEEeec
Confidence            5559999999999999999999999999999999999999999999986 578999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           81 ISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        81 is~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ||++||++|.++..+++++++||++++||++++||+|||++++||+||++++.|+|.+++..||..||.+|++|+++++|
T Consensus        80 iSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen   80 ISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             CCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            99999999999888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEeeCCCCCCCCCCCCccCCCCCCCCCCCCCcccccceee
Q 043626          161 IYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI  240 (291)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (291)
                      +||++..|.++|.+.++++||.+|++||||++.+.+++||+|++|..     +|..++.+.+.  .     ++    .+.
T Consensus       160 fYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL~~g~~-----~~~~l~~~~~~--~-----~e----~n~  223 (270)
T KOG1541|consen  160 FYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVLMTGGV-----VPRALTAGGET--K-----DE----DNA  223 (270)
T ss_pred             ecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEEecCCc-----ccccccCCccc--c-----cc----hhh
Confidence            99999999999999999999999999999999999999999999983     77777665221  0     01    111


Q ss_pred             ccccchhhhcccCCCCCcHHHHHHHHHHHHHcCCCCCCCCCCCCccCCCCC
Q 043626          241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF  291 (291)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~wi~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (291)
                      . |+   +.++++..+++|+||++|||+.|++|+.|+.|||||||||+.||
T Consensus       224 ~-r~---~~~~~~~~~~~r~wil~kke~~r~~g~~v~~dskytgRrrr~rf  270 (270)
T KOG1541|consen  224 K-RR---RWLGRKDEKSSREWILRKKELPRRRGRPVPSDSKYTGRRRRLRF  270 (270)
T ss_pred             h-hc---ccCCccccccchhheecHhhhhhhcCCCCCccccccccccccCC
Confidence            1 21   11112223799999999999999999999999999999999998

>PF12589 WBS_methylT: Methyltransferase involved in Williams-Beuren syndrome; InterPro: IPR022238 This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length

Probab=99.89  E-value=1.2e-23  Score=156.45  Aligned_cols=87  Identities=41%  Similarity=0.659  Sum_probs=57.9

Q ss_pred             EeeCCCCCCCCCCCCccCCCCCCCCCCCCCcccccceeeccccchhhhcccCCCCCcHHHHHHHHHHHHHcCCCCCCCCC
Q 043626          202 LTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTK  281 (291)
Q Consensus       202 l~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~k~~~~~~~~~~~~~~~~  281 (291)
                      ||+|....+..||.+++++.+  ++.+++..+.........+.+..+..+++..+++|+||++|||++|++|++|++|||
T Consensus         1 L~~G~~~~~~~lP~~l~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~kskeWI~~KKE~~R~~Gk~V~~DSK   78 (87)
T PF12589_consen    1 LFAGGPGVPQQLPKGLGEEGE--EDMDEEQVEYSQVVRSSRRRRRKRRKKKKKKKKSKEWILRKKERQRRQGKDVRPDSK   78 (87)
T ss_pred             CccCCCCCcccCCccCCcccc--cccchhhhhhhhhhhhhhHHHHHhccccCCCCccHHHHHHHHHHHHHCCCcCCCCCC
Confidence            567765455789999987644  122211111111222222222233334566789999999999999999999999999


Q ss_pred             CCCccCCCC
Q 043626          282 YTARKRKAR  290 (291)
Q Consensus       282 ~~~~~~~~~  290 (291)
                      ||||||+++
T Consensus        79 YTGRKRk~r   87 (87)
T PF12589_consen   79 YTGRKRKPR   87 (87)
T ss_pred             CCCCCCCCC
Confidence            999999986

The family is found in association with PF08241 from PFAM. This family is made up of S-adenosylmethionine-dependent methyltransferases []. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype [].

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.85  E-value=5.8e-21  Score=167.71  Aligned_cols=129  Identities=24%  Similarity=0.413  Sum_probs=113.5

Q ss_pred             chhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc
Q 043626           17 DTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER   92 (291)
Q Consensus        17 ~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~   92 (291)
                      +..|.+|+..+++..  .+..+.+.+++.+...+   +.+|||||||||.++..+++..  .+|+|+|+|+.||+.|+++
T Consensus        18 ~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~---g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k   94 (238)
T COG2226          18 DKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKP---GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK   94 (238)
T ss_pred             HhhHHHHHhhcccccCcchHHHHHHHHHhhCCCC---CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH
Confidence            478999999775433  45566777888887775   7899999999999999999985  8999999999999999998


Q ss_pred             CCc-----ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           93 EVE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        93 ~~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+     ++|+++|+ +.+||++++||+|.+.+.|+++.+           ...+|++++|+|||||++++-
T Consensus        95 ~~~~~~~~i~fv~~dA-e~LPf~D~sFD~vt~~fglrnv~d-----------~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226          95 LKKKGVQNVEFVVGDA-ENLPFPDNSFDAVTISFGLRNVTD-----------IDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             hhccCccceEEEEech-hhCCCCCCccCEEEeeehhhcCCC-----------HHHHHHHHHHhhcCCeEEEEE
Confidence            876     78999998 679999999999999999999988           789999999999999998873

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.83  E-value=1.9e-20  Score=165.30  Aligned_cols=132  Identities=23%  Similarity=0.409  Sum_probs=83.8

Q ss_pred             ccCCchhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHH
Q 043626           13 IFYDDTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLN   87 (291)
Q Consensus        13 ~fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~   87 (291)
                      .+|+ ..|..|+..+++..  ....+.+.+++.+...+   +.+|||+|||||.++..|++. +  ..|+|+|+|+.||+
T Consensus        11 ~~Fd-~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~---g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~   86 (233)
T PF01209_consen   11 KMFD-RIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRP---GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE   86 (233)
T ss_dssp             ---------------------------SHHHHHHT--S-----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred             HHHH-HHHHHhCCCccccCCcHHHHHHHHHHhccCCCC---CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence            3455 78999998766433  23445566777777665   779999999999999999886 3  69999999999999


Q ss_pred             HHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           88 IALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        88 ~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .|+++..     +++++++|+ +.+||++++||+|++.+.++.++|           ....+++++++|||||++++.
T Consensus        87 ~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglrn~~d-----------~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen   87 VARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLRNFPD-----------RERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             HHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GGG-SS-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHHhhCC-----------HHHHHHHHHHHcCCCeEEEEe
Confidence            9998643     589999998 669999999999999999999987           778999999999999998874

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.83  E-value=1.9e-19  Score=161.62  Aligned_cols=133  Identities=22%  Similarity=0.294  Sum_probs=105.1

Q ss_pred             cCCchhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHH
Q 043626           14 FYDDTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNI   88 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~   88 (291)
                      +|+ ..|..|+.......  ....+...+++.+.+.+   +.+|||||||+|.++..+++. +  ..|+|+|+|+.|++.
T Consensus        38 ~f~-~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~---~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~  113 (261)
T PLN02233         38 LFN-RIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKM---GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV  113 (261)
T ss_pred             HHH-HhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCC---CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            454 67888987543321  12223334456666655   679999999999999999876 3  589999999999999


Q ss_pred             HHhcC--------CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           89 ALERE--------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        89 a~~~~--------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+++.        .++.++++|+ ..+|+++++||+|+++++++|+.+           ...++++++++|||||++++.
T Consensus       114 A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~d-----------~~~~l~ei~rvLkpGG~l~i~  181 (261)
T PLN02233        114 AASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVVD-----------RLKAMQEMYRVLKPGSRVSIL  181 (261)
T ss_pred             HHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCCC-----------HHHHHHHHHHHcCcCcEEEEE
Confidence            98653        2478999998 568998999999999999999977           678999999999999999886


Q ss_pred             Ec
Q 043626          161 IY  162 (291)
Q Consensus       161 ~~  162 (291)
                      .+
T Consensus       182 d~  183 (261)
T PLN02233        182 DF  183 (261)
T ss_pred             EC
Confidence            44

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.81  E-value=4.4e-19  Score=158.12  Aligned_cols=129  Identities=30%  Similarity=0.454  Sum_probs=111.6

Q ss_pred             hhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcce
Q 043626           18 TEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGD   97 (291)
Q Consensus        18 ~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~   97 (291)
                      ..|..|+..   ..+|..+.+.+++.+....   +.+|||||||+|.++..|+..+..++|+|+|+.|++.|+++.....
T Consensus        15 ~aa~~Y~~~---~~~q~~~a~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~   88 (251)
T PRK10258         15 RAAAHYEQH---AELQRQSADALLAMLPQRK---FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH   88 (251)
T ss_pred             HHHHhHhHH---HHHHHHHHHHHHHhcCccC---CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence            445667653   4578889999999887543   6799999999999999999999999999999999999999877678


Q ss_pred             EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626           98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus        98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      ++++|+ +.+++.+++||+|+|+.+++|+.+           +..+|.+++++|+|||.+++.+...
T Consensus        89 ~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~d-----------~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258         89 YLAGDI-ESLPLATATFDLAWSNLAVQWCGN-----------LSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             EEEcCc-ccCcCCCCcEEEEEECchhhhcCC-----------HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            899998 557888889999999999999877           6789999999999999999987654

>PLN02244 tocopherol O-methyltransferase

Probab=99.79  E-value=3.1e-18  Score=159.41  Aligned_cols=150  Identities=20%  Similarity=0.270  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCC--CCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC------CcceEE
Q 043626           29 IIDIQAKLSERALELLALPD--DGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE------VEGDLL   99 (291)
Q Consensus        29 ~~~iq~~~~~~~lelL~~~~--~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~------~~~~~~   99 (291)
                      ....|..+.+.+++.+.++.  ...+.+|||||||+|.++..|++. +..|+|+|+|+.|++.|+++.      ..+.++
T Consensus        94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~  173 (340)
T PLN02244         94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQ  173 (340)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            44566778888898887721  012679999999999999999986 689999999999999887753      247899


Q ss_pred             EccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC----------hH--
Q 043626          100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES----------VA--  167 (291)
Q Consensus       100 ~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~----------~~--  167 (291)
                      ++|+ ..++|++++||+|+++.+++|+.+           ...++.+++++|+|||++++..+...          ..  
T Consensus       174 ~~D~-~~~~~~~~~FD~V~s~~~~~h~~d-----------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~  241 (340)
T PLN02244        174 VADA-LNQPFEDGQFDLVWSMESGEHMPD-----------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQ  241 (340)
T ss_pred             EcCc-ccCCCCCCCccEEEECCchhccCC-----------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHH
Confidence            9998 457888999999999999999977           67899999999999999998643210          00  


Q ss_pred             ----------------HHHHHHHHHHHcCCCCcEEEeCC
Q 043626          168 ----------------QRELILGAAMRAGFAGGVVVDYP  190 (291)
Q Consensus       168 ----------------~~~~i~~~~~~aGF~~~~~~~~p  190 (291)
                                      ....+..++.++||....+.++.
T Consensus       242 ~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s  280 (340)
T PLN02244        242 KLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWS  280 (340)
T ss_pred             HHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence                            24467778899999875555554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.78  E-value=1.2e-17  Score=154.48  Aligned_cols=162  Identities=21%  Similarity=0.241  Sum_probs=122.8

Q ss_pred             cccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHH
Q 043626           12 EIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIA   89 (291)
Q Consensus        12 e~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a   89 (291)
                      ..||+ ..|..|+...........+.+.+++.+.+..+  +.+|||||||+|.++..+++.  +..++++|+|+.|++.|
T Consensus        77 ~~~y~-~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~--~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A  153 (340)
T PLN02490         77 FWFYR-FLSIVYDHIINPGHWTEDMRDDALEPADLSDR--NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA  153 (340)
T ss_pred             eeEcc-ceeeecCCCeecCcchHHHHHHHHhhcccCCC--CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            34555 67888987432222334566667776665443  679999999999999888875  37899999999999999


Q ss_pred             HhcC--CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC
Q 043626           90 LERE--VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES  165 (291)
Q Consensus        90 ~~~~--~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~  165 (291)
                      +++.  .++.++.+|+ ..+++..++||+|+++.+++|+.+           ...+|++++++|+|||++++...  +..
T Consensus       154 ~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~~d-----------~~~~L~e~~rvLkPGG~LvIi~~~~p~~  221 (340)
T PLN02490        154 KQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYWPD-----------PQRGIKEAYRVLKIGGKACLIGPVHPTF  221 (340)
T ss_pred             HHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhCCC-----------HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence            8874  3578899998 457888899999999999999876           55789999999999999987421  111


Q ss_pred             ------------hHHHHHHHHHHHHcCCCCcEEEe
Q 043626          166 ------------VAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       166 ------------~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                                  ....+++.+++.++||....+.+
T Consensus       222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence                        11356788999999999744444

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.77  E-value=2e-18  Score=129.69  Aligned_cols=92  Identities=34%  Similarity=0.493  Sum_probs=80.8

Q ss_pred             EEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--ceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc
Q 043626           56 LDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA  132 (291)
Q Consensus        56 LDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~  132 (291)
                      ||||||+|..+..|++. +..|+|+|+|+.|++.++++...  ..+..+|+ ..+||++++||+|+++++++|+.+    
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~~~----   75 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA-EDLPFPDNSFDVVFSNSVLHHLED----   75 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT-TSSSS-TT-EEEEEEESHGGGSSH----
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH-HhCccccccccccccccceeeccC----
Confidence            89999999999999999 79999999999999999998754  45899998 557999999999999999999955    


Q ss_pred             CCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          133 SHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                             ...++++++++|||||+++|
T Consensus        76 -------~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   76 -------PEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -------HHHHHHHHHHHEEEEEEEEE
T ss_pred             -------HHHHHHHHHHHcCcCeEEeC
Confidence                   78999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.77  E-value=1.3e-17  Score=146.74  Aligned_cols=129  Identities=20%  Similarity=0.298  Sum_probs=103.0

Q ss_pred             hhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhc
Q 043626           18 TEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALER   92 (291)
Q Consensus        18 ~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~   92 (291)
                      ..|..|+.......  ......+.++..+.+++   +.+|||||||+|.++..+++. +  ..++|+|+|+.|++.|+++
T Consensus        13 ~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~   89 (231)
T TIGR02752        13 KIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQA---GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQK   89 (231)
T ss_pred             HhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCC---CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            56777877544332  12334466777777665   679999999999999999876 2  6999999999999999876


Q ss_pred             CC-----cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           93 EV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        93 ~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ..     +++++++|+. .++++.++||+|++..+++|+.+           ...++.++.++|+|||.+++..
T Consensus        90 ~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~~~~~-----------~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752        90 VKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLRNVPD-----------YMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             HHhcCCCceEEEEechh-cCCCCCCCccEEEEecccccCCC-----------HHHHHHHHHHHcCcCeEEEEEE
Confidence            42     4688999984 46777889999999999999876           6689999999999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.77  E-value=3.9e-19  Score=153.43  Aligned_cols=187  Identities=17%  Similarity=0.138  Sum_probs=140.7

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCC---CC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE----GDLLLGDMGQG---LG  108 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~---~~  108 (291)
                      .=+++..... .+.+||+||||.|.....|.+-    +..++++|.|+.+++..+++...    +...+.|+...   -+
T Consensus        61 fpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~  139 (264)
T KOG2361|consen   61 FPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEP  139 (264)
T ss_pred             hHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCC
Confidence            3344444432 1348999999999999999875    27899999999999999887643    44555666442   35


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-HHHHHHHHHHHHcCCCCcEEE
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-AQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-~~~~~i~~~~~~aGF~~~~~~  187 (291)
                      ...+++|+|+++++|..+         ++......+.+++++|||||.++|..|+..+ .++          .|..+.++
T Consensus       140 ~~~~svD~it~IFvLSAi---------~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql----------RF~~~~~i  200 (264)
T KOG2361|consen  140 PEEGSVDIITLIFVLSAI---------HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL----------RFKKGQCI  200 (264)
T ss_pred             CCcCccceEEEEEEEecc---------ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH----------hccCCcee
Confidence            678999999999999877         4455889999999999999999999987542 222          26677889


Q ss_pred             eCCCCCCCCcEEEEEeeCCCCCCCCCCCCccCCCCCCCCCCCCCcccccceeeccccchhhhcccCCCCCcHHHHHHH
Q 043626          188 DYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREWVLKK  265 (291)
Q Consensus       188 ~~p~~~~~~~~~l~l~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~k  265 (291)
                      +..+..+......+++.-.........+|+.+.                +..+++|+   .++|+|+++|+|.|||.|
T Consensus       201 ~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~----------------~~~~~~rl---~vNr~k~lkm~Rvwvq~~  259 (264)
T KOG2361|consen  201 SENFYVRGDGTRAYFFTEEELDELFTKAGFEEV----------------QLEVDCRL---LVNRKKQLKMYRVWVQAK  259 (264)
T ss_pred             ecceEEccCCceeeeccHHHHHHHHHhcccchh----------------cccceeee---eeehhccCccceEEEEEE
Confidence            998888888888777765544334555666543                34466666   788899999999999876

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.75  E-value=1.3e-17  Score=153.45  Aligned_cols=120  Identities=22%  Similarity=0.253  Sum_probs=101.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..|+..|..|+|||+|+.|++.|+.+.      ..+.++++|+ +.+++..++||+|++..+++|
T Consensus       132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhhHHHh
Confidence            569999999999999999999999999999999999998753      2467888887 556777789999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---------------------------hHHHHHHHHHHHH
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---------------------------VAQRELILGAAMR  178 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---------------------------~~~~~~i~~~~~~  178 (291)
                      +.+           ...++..+.++|+|||.+++.+....                           ....+++...+.+
T Consensus       211 v~d-----------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~  279 (322)
T PLN02396        211 VAN-----------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR  279 (322)
T ss_pred             cCC-----------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence            987           67899999999999999998753211                           1135678888888


Q ss_pred             cCCCC
Q 043626          179 AGFAG  183 (291)
Q Consensus       179 aGF~~  183 (291)
                      +||..
T Consensus       280 aGf~i  284 (322)
T PLN02396        280 ASVDV  284 (322)
T ss_pred             cCCeE
Confidence            99874

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.75  E-value=1.3e-17  Score=149.11  Aligned_cols=102  Identities=24%  Similarity=0.315  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..|++.++.|+|+|+|+.|++.|+++..      .+.++++|+.+..++.+++||+|++..+++|
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~  124 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW  124 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence            6799999999999999999999999999999999999988642      3678888884433456789999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      +.+           ...++..++++|+|||.+++.++..
T Consensus       125 ~~~-----------~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        125 VAD-----------PKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             hCC-----------HHHHHHHHHHHcCCCeEEEEEEECc
Confidence            976           5688999999999999999876543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.75  E-value=2.6e-17  Score=147.17  Aligned_cols=121  Identities=25%  Similarity=0.297  Sum_probs=99.1

Q ss_pred             hccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcce
Q 043626           20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGD   97 (291)
Q Consensus        20 a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~   97 (291)
                      +..|...+   ..+......+++.+....   +.+|||||||+|.++..|+..  +.+|+|+|+|+.|++.|+++  .++
T Consensus         4 ~~~y~~~~---~~~~~~~~~ll~~l~~~~---~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~   75 (255)
T PRK14103          4 PDVYLAFA---DHRGRPFYDLLARVGAER---ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVD   75 (255)
T ss_pred             HHHHHHHH---hHhhCHHHHHHHhCCCCC---CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCc
Confidence            34454433   334456677888887665   689999999999999999987  57999999999999999875  478


Q ss_pred             EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ++++|+.+ ++ ..++||+|+|+.++||+++           ...++.+++++|+|||.+++.+
T Consensus        76 ~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~d-----------~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         76 ARTGDVRD-WK-PKPDTDVVVSNAALQWVPE-----------HADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             EEEcChhh-CC-CCCCceEEEEehhhhhCCC-----------HHHHHHHHHHhCCCCcEEEEEc
Confidence            89999843 43 4579999999999999977           6789999999999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.74  E-value=4.9e-17  Score=145.48  Aligned_cols=123  Identities=28%  Similarity=0.421  Sum_probs=104.1

Q ss_pred             hccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcce
Q 043626           20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGD   97 (291)
Q Consensus        20 a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~   97 (291)
                      |..|..   ....|......+++.+.+.+   +.+|||||||+|.++..+++.  +..|+|+|+|+.|++.|+++..++.
T Consensus         6 ~~~Y~~---~~~~~~~~~~~ll~~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~   79 (258)
T PRK01683          6 PSLYLK---FEDERTRPARDLLARVPLEN---PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQ   79 (258)
T ss_pred             HHHHHH---HHHHhhcHHHHHHhhCCCcC---CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCe
Confidence            556654   33556677888888887665   679999999999999999986  4799999999999999999988889


Q ss_pred             EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ++.+|+... . ..++||+|+++.+++|+.+           ...++..++++|+|||.+++++
T Consensus        80 ~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~d-----------~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         80 FVEADIASW-Q-PPQALDLIFANASLQWLPD-----------HLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             EEECchhcc-C-CCCCccEEEEccChhhCCC-----------HHHHHHHHHHhcCCCcEEEEEC
Confidence            999998543 2 3569999999999999976           6689999999999999999975

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.74  E-value=8.1e-17  Score=144.82  Aligned_cols=136  Identities=21%  Similarity=0.240  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~  110 (291)
                      ..+..+++.+.+.+   +.+|||||||+|..+..|+.. +.+|+|+|+|+.|++.|+++..   .+.+.++|+. ..+++
T Consensus        39 ~~~~~~l~~l~l~~---~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~  114 (263)
T PTZ00098         39 EATTKILSDIELNE---NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFP  114 (263)
T ss_pred             HHHHHHHHhCCCCC---CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCC
Confidence            34667788877776   779999999999999988765 5799999999999999998754   3788899984 46788


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-------------------HHHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-------------------AQREL  171 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-------------------~~~~~  171 (291)
                      +++||+|++..+++|++.         .....+|++++++|+|||++++..+....                   .....
T Consensus       115 ~~~FD~V~s~~~l~h~~~---------~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSY---------ADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQE  185 (263)
T ss_pred             CCCeEEEEEhhhHHhCCH---------HHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHH
Confidence            899999999988888742         12678999999999999999987542110                   12345


Q ss_pred             HHHHHHHcCCCC
Q 043626          172 ILGAAMRAGFAG  183 (291)
Q Consensus       172 i~~~~~~aGF~~  183 (291)
                      +..++..+||..
T Consensus       186 ~~~~l~~aGF~~  197 (263)
T PTZ00098        186 YGDLIKSCNFQN  197 (263)
T ss_pred             HHHHHHHCCCCe
Confidence            667777888876

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.73  E-value=3.3e-17  Score=139.36  Aligned_cols=113  Identities=27%  Similarity=0.327  Sum_probs=96.5

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      +.-+.+++..-+.-....|.|||||+|+++..|+++  +..++|+|.|++||+.|+++.+++.|..+|+.+..|  ...+
T Consensus        16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p--~~~~   93 (257)
T COG4106          16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP--EQPT   93 (257)
T ss_pred             cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC--CCcc
Confidence            344555554332212679999999999999999998  489999999999999999999999999999966545  6789


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      |++++|.+|||+++           -..+|..+...|.|||.+.+++-
T Consensus        94 dllfaNAvlqWlpd-----------H~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106          94 DLLFANAVLQWLPD-----------HPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             chhhhhhhhhhccc-----------cHHHHHHHHHhhCCCceEEEECC
Confidence            99999999999988           56889999999999999999983

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.71  E-value=2.4e-16  Score=136.57  Aligned_cols=135  Identities=14%  Similarity=0.188  Sum_probs=101.9

Q ss_pred             CcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHH
Q 043626           11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNI   88 (291)
Q Consensus        11 pe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~   88 (291)
                      .+.||....+..|....+.........+.+.+.+.....  +.+|||||||+|..+..|++.  +..++|+|+|+.|++.
T Consensus         5 ~~~fw~~~~g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~--~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~   82 (204)
T TIGR03587         5 QEQFWAGEFGKEYIDRNSRQSLVAAKLAMFARALNRLPK--IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK   82 (204)
T ss_pred             HHHHhcCcccchhhhccccHHHHHHHHHHHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            456777555667877665444333344444444432222  668999999999999999886  5899999999999999


Q ss_pred             HHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           89 ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        89 a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+++...+.++.+|+.+  ++++++||+|+++.+++|+..         ..+..++.++++++  ++.+++.
T Consensus        83 A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p---------~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587        83 AKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP---------DNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             HHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH---------HHHHHHHHHHHhhc--CcEEEEE
Confidence            99988888899999855  778899999999999999832         33778999999997  3455553

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.70  E-value=3.4e-16  Score=144.60  Aligned_cols=137  Identities=23%  Similarity=0.290  Sum_probs=105.9

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHh--c----CCcceEEEccCCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALE--R----EVEGDLLLGDMGQGLGLR  110 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~--~----~~~~~~~~~D~~~~~~~~  110 (291)
                      .+++..+....   +.+|||||||+|.++..++..| ..|+|+|+|+.|+..+..  +    ...+.++.+|+ +.+++ 
T Consensus       112 ~~l~~~l~~l~---g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~-e~lp~-  186 (322)
T PRK15068        112 DRVLPHLSPLK---GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI-EQLPA-  186 (322)
T ss_pred             HHHHHhhCCCC---CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH-HHCCC-
Confidence            34555555333   6799999999999999999987 579999999999875432  1    23578899998 55677 


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-----------CCC----------hHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-----------PES----------VAQR  169 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-----------~~~----------~~~~  169 (291)
                      +++||+|+|..+++|+.+           +..+|++++++|+|||.+++...           |..          ....
T Consensus       187 ~~~FD~V~s~~vl~H~~d-----------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~  255 (322)
T PRK15068        187 LKAFDTVFSMGVLYHRRS-----------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSV  255 (322)
T ss_pred             cCCcCEEEECChhhccCC-----------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCH
Confidence            789999999999999876           67899999999999999998631           110          0135


Q ss_pred             HHHHHHHHHcCCCCcEEEeCC
Q 043626          170 ELILGAAMRAGFAGGVVVDYP  190 (291)
Q Consensus       170 ~~i~~~~~~aGF~~~~~~~~p  190 (291)
                      ..+..++.++||....+++..
T Consensus       256 ~~l~~~L~~aGF~~i~~~~~~  276 (322)
T PRK15068        256 PALKNWLERAGFKDVRIVDVS  276 (322)
T ss_pred             HHHHHHHHHcCCceEEEEeCC
Confidence            678999999999985555543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.70  E-value=6.3e-17  Score=140.49  Aligned_cols=103  Identities=19%  Similarity=0.332  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE----GDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||||||-|.+++.|+..|..|+|+|+|+.+|+.|+....+    +++.+..+ +.+....++||+|+|..+++|++
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~-edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV-EDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH-HHHHhcCCCccEEEEhhHHHccC
Confidence            67999999999999999999999999999999999999976543    44555554 33444458999999999999999


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV  166 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~  166 (291)
                      +           ...|+..+.+++||||.+++++...+.
T Consensus       139 d-----------p~~~~~~c~~lvkP~G~lf~STinrt~  166 (243)
T COG2227         139 D-----------PESFLRACAKLVKPGGILFLSTINRTL  166 (243)
T ss_pred             C-----------HHHHHHHHHHHcCCCcEEEEeccccCH
Confidence            8           678999999999999999998765443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.70  E-value=1e-16  Score=132.24  Aligned_cols=95  Identities=27%  Similarity=0.315  Sum_probs=79.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +.+|||||||+|.++..+++.|.+++|+|+|+.+++.     ........+. ...++.+++||+|+|+.+++|+++   
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~fD~i~~~~~l~~~~d---   93 (161)
T PF13489_consen   23 GKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-----RNVVFDNFDA-QDPPFPDGSFDLIICNDVLEHLPD---   93 (161)
T ss_dssp             TSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-----TTSEEEEEEC-HTHHCHSSSEEEEEEESSGGGSSH---
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-----hhhhhhhhhh-hhhhccccchhhHhhHHHHhhccc---
Confidence            7799999999999999999999999999999999988     2222333322 123455789999999999999987   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                              +..+++.++++|+|||++++.+..
T Consensus        94 --------~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   94 --------PEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             --------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             --------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence                    779999999999999999997653

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.70  E-value=3.9e-16  Score=151.48  Aligned_cols=133  Identities=23%  Similarity=0.356  Sum_probs=106.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~  110 (291)
                      .++.+++.+.+.+   +.+|||||||+|..+..|+.. +..++|+|+|+.|++.|+++..    .+.++++|+. ..+++
T Consensus       254 ~te~l~~~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~  329 (475)
T PLN02336        254 TTKEFVDKLDLKP---GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT-KKTYP  329 (475)
T ss_pred             HHHHHHHhcCCCC---CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc-cCCCC
Confidence            3566777777654   679999999999999988876 6899999999999999987653    3678899984 46677


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------------------hHHHHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------------------VAQRELI  172 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------------------~~~~~~i  172 (291)
                      +++||+|+|..+++|+.+           ...++.+++++|+|||.+++..+...                  ......+
T Consensus       330 ~~~fD~I~s~~~l~h~~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  398 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQD-----------KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAY  398 (475)
T ss_pred             CCCEEEEEECCcccccCC-----------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHH
Confidence            789999999999999977           66899999999999999998754211                  1124456


Q ss_pred             HHHHHHcCCCC
Q 043626          173 LGAAMRAGFAG  183 (291)
Q Consensus       173 ~~~~~~aGF~~  183 (291)
                      .+++.++||..
T Consensus       399 ~~~l~~aGF~~  409 (475)
T PLN02336        399 GQMLKDAGFDD  409 (475)
T ss_pred             HHHHHHCCCee
Confidence            67777788875

>PRK05785 hypothetical protein; Provisional

Probab=99.70  E-value=4e-16  Score=137.30  Aligned_cols=128  Identities=18%  Similarity=0.298  Sum_probs=96.7

Q ss_pred             cCCchhhccccccchhHH--HHHHHHHHHHHHhCC--CCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHH
Q 043626           14 FYDDTEARKYTSSSRIID--IQAKLSERALELLAL--PDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNI   88 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~--~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~   88 (291)
                      +|+ ..|..|+...++..  ....+...+++.+..  +.   +.+|||||||||.++..|++. +.+++|+|+|+.|++.
T Consensus        14 ~f~-~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~---~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~   89 (226)
T PRK05785         14 AYN-KIPKAYDRANRFISFNQDVRWRAELVKTILKYCGR---PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM   89 (226)
T ss_pred             HHH-hhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            454 68888987543221  112233334444321  22   569999999999999999988 5899999999999999


Q ss_pred             HHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           89 ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        89 a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+++   ..++++|+ +.+||++++||+|++.++++|+.+           +..++++++++|+|. ..++.+
T Consensus        90 a~~~---~~~~~~d~-~~lp~~d~sfD~v~~~~~l~~~~d-----------~~~~l~e~~RvLkp~-~~ile~  146 (226)
T PRK05785         90 NLVA---DDKVVGSF-EALPFRDKSFDVVMSSFALHASDN-----------IEKVIAEFTRVSRKQ-VGFIAM  146 (226)
T ss_pred             HHhc---cceEEech-hhCCCCCCCEEEEEecChhhccCC-----------HHHHHHHHHHHhcCc-eEEEEe
Confidence            9876   35678888 568999999999999999999877           778999999999994 334444

>TIGR00452 methyltransferase, putative

Probab=99.69  E-value=8.7e-16  Score=140.93  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=102.7

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHh--c----CCcceEEEccCCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALE--R----EVEGDLLLGDMGQGLGLR  110 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~--~----~~~~~~~~~D~~~~~~~~  110 (291)
                      .+++..+....   +.+|||||||+|.++..++..| ..|+|+|+|+.|+..+..  +    ...+.+...++. .+++ 
T Consensus       111 ~~~l~~l~~~~---g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~-  185 (314)
T TIGR00452       111 DRVLPHLSPLK---GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHE-  185 (314)
T ss_pred             HHHHHhcCCCC---CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCC-
Confidence            45666665544   6799999999999999998888 579999999999876432  1    223567777773 4554 


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----------CC----------hHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----------ES----------VAQR  169 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----------~~----------~~~~  169 (291)
                      ..+||+|+|+.+++|+.+           +..+|.+++++|+|||.+++.+..           ..          ....
T Consensus       186 ~~~FD~V~s~gvL~H~~d-----------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~  254 (314)
T TIGR00452       186 LYAFDTVFSMGVLYHRKS-----------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSV  254 (314)
T ss_pred             CCCcCEEEEcchhhccCC-----------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCH
Confidence            358999999999999977           678999999999999999986321           00          0135


Q ss_pred             HHHHHHHHHcCCCCcEEEeC
Q 043626          170 ELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       170 ~~i~~~~~~aGF~~~~~~~~  189 (291)
                      ..+..++.++||....+++.
T Consensus       255 ~~L~~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       255 SALKNWLEKVGFENFRILDV  274 (314)
T ss_pred             HHHHHHHHHCCCeEEEEEec
Confidence            67788999999997444443

Known examples to date are restricted to the proteobacteria.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.69  E-value=1.1e-15  Score=134.19  Aligned_cols=130  Identities=31%  Similarity=0.437  Sum_probs=104.9

Q ss_pred             hhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-c
Q 043626           19 EARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-E   95 (291)
Q Consensus        19 ~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-~   95 (291)
                      .+..|+..   ..+|..+...+++.+.......+.+|||||||+|.++..+++.+  ..++++|+|+.++..+..+.. .
T Consensus         5 ~~~~y~~~---~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (240)
T TIGR02072         5 AAKTYDRH---AKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSEN   81 (240)
T ss_pred             hhhchhHH---HHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCC
Confidence            34556542   45677888888887764321125689999999999999999886  578999999999999988764 4


Q ss_pred             ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           96 GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        96 ~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      +.++.+|+. ..++.+++||+|+++.+++|+.+           +..++..+.++|+|||.+++....
T Consensus        82 ~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~~-----------~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072        82 VQFICGDAE-KLPLEDSSFDLIVSNLALQWCDD-----------LSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             CeEEecchh-hCCCCCCceeEEEEhhhhhhccC-----------HHHHHHHHHHHcCCCcEEEEEeCC
Confidence            688999984 56777889999999999999976           678999999999999999997643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.69  E-value=5.4e-16  Score=127.90  Aligned_cols=99  Identities=26%  Similarity=0.390  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchhHHHHHH-c--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--CCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSE-N--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~-~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~~~~~fD~Vis~~  121 (291)
                      +.+|||+|||+|.++..|++ .  +.+++|+|+|+.|++.|+++.     .++.++++|+.+ ++  +. +.||+|++..
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDIIISNG   81 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEEEEES
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEEEEcC
Confidence            67999999999999999994 4  489999999999999999853     358999999966 66  54 8999999999


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      +++|+.+           ...+++.+.++|++||.+++..+.
T Consensus        82 ~l~~~~~-----------~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPD-----------PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSH-----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccC-----------HHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999977           678999999999999999998765

...

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.68  E-value=9.1e-16  Score=134.79  Aligned_cols=133  Identities=21%  Similarity=0.371  Sum_probs=104.1

Q ss_pred             cccCCchhhccccccchhH--HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHH
Q 043626           12 EIFYDDTEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSML   86 (291)
Q Consensus        12 e~fy~~~~a~~Y~~~~~~~--~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml   86 (291)
                      ..+|+ ..+..|+......  .........++..+...+   +.+|||||||+|.++..++..+   .+++++|+++.++
T Consensus        14 ~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~   89 (239)
T PRK00216         14 AEMFD-SIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRP---GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML   89 (239)
T ss_pred             HHHHH-HhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCC---CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH
Confidence            44666 5678887432211  123445566777776654   6799999999999999998875   7999999999999


Q ss_pred             HHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           87 NIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        87 ~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.++++..      .+.++.+|+. ..++..++||+|++..+++++.+           +..++..+.++|+|||.+++.
T Consensus        90 ~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l~~~~~-----------~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216         90 AVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGLRNVPD-----------IDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             HHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEecccccCCC-----------HHHHHHHHHHhccCCcEEEEE
Confidence            99998753      3678888884 45666789999999999998876           678999999999999999874

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.68  E-value=3.1e-16  Score=122.08  Aligned_cols=101  Identities=28%  Similarity=0.340  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECC-c
Q 043626           52 PRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISIS-A  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~-~  122 (291)
                      +.+|||||||+|.++..+++  .+.+++|+|+|+.|++.|+++.      ..+.++++|+ ....-..+.||+|++.. +
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGS
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCc
Confidence            56999999999999999999  6799999999999999999887      3579999998 32233356799999998 6


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ++++..        ......+++.+.+.|+|||++++..
T Consensus        81 ~~~~~~--------~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLP--------LDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCH--------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccc--------hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            665532        1336789999999999999999875

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.68  E-value=5e-16  Score=140.12  Aligned_cols=119  Identities=29%  Similarity=0.354  Sum_probs=92.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626           28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLL  100 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~  100 (291)
                      .+...|..+.+.+++.+.+++   +.+|||||||.|.++..+++. |.+|+|+.+|+...+.++++..      .+.+.+
T Consensus        42 ~Le~AQ~~k~~~~~~~~~l~~---G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~  118 (273)
T PF02353_consen   42 TLEEAQERKLDLLCEKLGLKP---GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRL  118 (273)
T ss_dssp             -HHHHHHHHHHHHHTTTT--T---T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred             hHHHHHHHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            377889999999999999987   889999999999999999998 8999999999999999987653      267888


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .|.. .++   ++||.|||+.+++|+..         +.+..+|+.+.++|+|||+++++..
T Consensus       119 ~D~~-~~~---~~fD~IvSi~~~Ehvg~---------~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen  119 QDYR-DLP---GKFDRIVSIEMFEHVGR---------KNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             S-GG-G------S-SEEEEESEGGGTCG---------GGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             eecc-ccC---CCCCEEEEEechhhcCh---------hHHHHHHHHHHHhcCCCcEEEEEec
Confidence            8873 233   39999999999999943         2278999999999999999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.68  E-value=6.5e-16  Score=133.13  Aligned_cols=107  Identities=21%  Similarity=0.310  Sum_probs=86.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~  113 (291)
                      .+++.+...+   +.+|||+|||+|..+..|++.|.+|+|+|+|+.|++.++++.     .++.+.+.|+. .+++ +++
T Consensus        21 ~l~~~l~~~~---~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~-~~~~-~~~   95 (197)
T PRK11207         21 EVLEAVKVVK---PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN-NLTF-DGE   95 (197)
T ss_pred             HHHHhcccCC---CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh-hCCc-CCC
Confidence            3455555544   679999999999999999999999999999999999887643     23677888874 3455 467


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ||+|+|+.+++|+..         .....++..++++|+|||.+++
T Consensus        96 fD~I~~~~~~~~~~~---------~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         96 YDFILSTVVLMFLEA---------KTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             cCEEEEecchhhCCH---------HHHHHHHHHHHHHcCCCcEEEE
Confidence            999999999988732         2367999999999999999654

>TIGR00740 methyltransferase, putative

Probab=99.67  E-value=3.1e-15  Score=132.54  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             CCchhhccccccch-hHHHHHHHHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHH
Q 043626           15 YDDTEARKYTSSSR-IIDIQAKLSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLN   87 (291)
Q Consensus        15 y~~~~a~~Y~~~~~-~~~iq~~~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~   87 (291)
                      |++..|..|+...+ .......+.+.+..+..  .++   +.+|||||||+|..+..+++.    +..++|+|+|+.|++
T Consensus        17 ~~~~~a~~y~~~~~~~~p~y~~~~~~~~~l~~~~~~~---~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~   93 (239)
T TIGR00740        17 FDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTP---DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVE   93 (239)
T ss_pred             cChHHHHhCcchhhccCCCHHHHHHHHHHHHHHhCCC---CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHH
Confidence            45456778887532 11112223333332221  122   569999999999999988874    478999999999999


Q ss_pred             HHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           88 IALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        88 ~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .|+++..      .+.++++|+ ..+++  ..+|+|++++++||+.+         .....++++++++|+|||.+++..
T Consensus        94 ~a~~~~~~~~~~~~v~~~~~d~-~~~~~--~~~d~v~~~~~l~~~~~---------~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740        94 RCRQHIAAYHSEIPVEILCNDI-RHVEI--KNASMVILNFTLQFLPP---------EDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             HHHHHHHhcCCCCCeEEEECCh-hhCCC--CCCCEEeeecchhhCCH---------HHHHHHHHHHHHhcCCCeEEEEee
Confidence            9987642      368899998 44554  35899999999999843         225689999999999999999873

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=1.4e-15  Score=136.26  Aligned_cols=121  Identities=25%  Similarity=0.342  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626           28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLL  100 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~  100 (291)
                      .+...|..-.+.+++.|.+.+   +++|||||||.|.+...+++. +.+|+|+++|+++.+.++++..      .+++..
T Consensus        52 tL~eAQ~~k~~~~~~kl~L~~---G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l  128 (283)
T COG2230          52 TLEEAQRAKLDLILEKLGLKP---GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL  128 (283)
T ss_pred             ChHHHHHHHHHHHHHhcCCCC---CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe
Confidence            477788899999999999998   899999999999999999988 6999999999999999988543      367888


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .|..+ +   .+.||-|||+.+++|+-.         .....||+.++++|+|||++++.....
T Consensus       129 ~d~rd-~---~e~fDrIvSvgmfEhvg~---------~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         129 QDYRD-F---EEPFDRIVSVGMFEHVGK---------ENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             ccccc-c---ccccceeeehhhHHHhCc---------ccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            88733 3   345999999999999954         337899999999999999999976554

>PRK08317 hypothetical protein; Provisional

Probab=99.66  E-value=5e-15  Score=129.71  Aligned_cols=112  Identities=30%  Similarity=0.454  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+.+.+   +.+|||+|||+|.++..++...   ..++|+|+|+.+++.++++    ...+.+...|+ ...
T Consensus         6 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~   81 (241)
T PRK08317          6 RYRARTFELLAVQP---GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGL   81 (241)
T ss_pred             HHHHHHHHHcCCCC---CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccC
Confidence            34456777777776   6799999999999999998763   6899999999999999886    23478888887 446


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ++..++||+|++..+++|+.+           ...+++.++++|+|||.+++..
T Consensus        82 ~~~~~~~D~v~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         82 PFPDGSFDAVRSDRVLQHLED-----------PARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCCCCceEEEEechhhccCC-----------HHHHHHHHHHHhcCCcEEEEEe
Confidence            777889999999999999977           6789999999999999999854

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=4.5e-15  Score=132.29  Aligned_cols=133  Identities=17%  Similarity=0.264  Sum_probs=98.0

Q ss_pred             cccCCchhhccccccch-----hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCC
Q 043626           12 EIFYDDTEARKYTSSSR-----IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDIS   82 (291)
Q Consensus        12 e~fy~~~~a~~Y~~~~~-----~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis   82 (291)
                      ...|++..|..|+...+     ...++ .+...++..+ +++   +.+|||||||+|..+..+++.    +.+++|+|+|
T Consensus        17 ~~~f~~~~a~~yd~~~~~~~p~y~~~~-~~~~~~~~~~-~~~---~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S   91 (247)
T PRK15451         17 DWTFDERVAEVFPDMIQRSVPGYSNII-SMIGMLAERF-VQP---GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS   91 (247)
T ss_pred             CCccChHHHHhhhhHHHhcCCChHHHH-HHHHHHHHHh-CCC---CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCC
Confidence            45567777888977643     11122 2222333322 223   679999999999999888762    4799999999


Q ss_pred             HHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcE
Q 043626           83 QSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR  156 (291)
Q Consensus        83 ~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~  156 (291)
                      +.|++.|+++..      .+.++++|+. .+++  +.+|+|+++.++||+.+         .....++++++++|+|||.
T Consensus        92 ~~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~D~vv~~~~l~~l~~---------~~~~~~l~~i~~~LkpGG~  159 (247)
T PRK15451         92 PAMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI--ENASMVVLNFTLQFLEP---------SERQALLDKIYQGLNPGGA  159 (247)
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC--CCCCEEehhhHHHhCCH---------HHHHHHHHHHHHhcCCCCE
Confidence            999999988753      4788999984 3554  45999999999999853         2256899999999999999


Q ss_pred             EEEEE
Q 043626          157 AVFQI  161 (291)
Q Consensus       157 lv~~~  161 (291)
                      +++..
T Consensus       160 l~l~e  164 (247)
T PRK15451        160 LVLSE  164 (247)
T ss_pred             EEEEE
Confidence            99863

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.65  E-value=1.8e-15  Score=131.76  Aligned_cols=132  Identities=18%  Similarity=0.239  Sum_probs=106.8

Q ss_pred             hhhccccccchhH--HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--------CCeEEEEeCCHHHHH
Q 043626           18 TEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--------GHQWIGLDISQSMLN   87 (291)
Q Consensus        18 ~~a~~Y~~~~~~~--~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--------g~~v~gvDis~~ml~   87 (291)
                      ..|.+|+......  .+++-+-+..+..|....   ++++||++||||.++..+.++        +.+|+.+|||+.||.
T Consensus        68 ~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~---~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~  144 (296)
T KOG1540|consen   68 SVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGK---GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLA  144 (296)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHhhhccCCCC---CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHH
Confidence            5667777654322  244455566777777665   789999999999999999875        268999999999999


Q ss_pred             HHHhcCCc--------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626           88 IALEREVE--------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus        88 ~a~~~~~~--------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .++++...        ..|+++|+ +.+||++.+||..++.+.+..+.+           +.+.++++|++|||||++.+
T Consensus       145 vgkqRa~~~~l~~~~~~~w~~~dA-E~LpFdd~s~D~yTiafGIRN~th-----------~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  145 VGKQRAKKRPLKASSRVEWVEGDA-EDLPFDDDSFDAYTIAFGIRNVTH-----------IQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             HHHHHHhhcCCCcCCceEEEeCCc-ccCCCCCCcceeEEEecceecCCC-----------HHHHHHHHHHhcCCCcEEEE
Confidence            99988722        57899998 679999999999999999988877           77899999999999999987


Q ss_pred             EEcCC
Q 043626          160 QIYPE  164 (291)
Q Consensus       160 ~~~~~  164 (291)
                      -.++.
T Consensus       213 LeFsk  217 (296)
T KOG1540|consen  213 LEFSK  217 (296)
T ss_pred             EEccc
Confidence            55543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.65  E-value=1.5e-15  Score=130.60  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=84.5

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~f  114 (291)
                      .+++.+....   +.+|||+|||+|.++..|+++|..|+|+|+|+.|++.++++..    .+.+...|+. ..++ +++|
T Consensus        21 ~l~~~~~~~~---~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~~-~~~f   95 (195)
T TIGR00477        21 AVREAVKTVA---PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAAL-NEDY   95 (195)
T ss_pred             HHHHHhccCC---CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hccc-cCCC
Confidence            3444554444   5699999999999999999999999999999999998876432    3566777763 3444 4689


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+|+++.+++|+..         .....++++++++|+|||++++.
T Consensus        96 D~I~~~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        96 DFIFSTVVFMFLQA---------GRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CEEEEecccccCCH---------HHHHHHHHHHHHHhCCCcEEEEE
Confidence            99999999988732         23678999999999999996654

Part of a tellurite-reducing operon tehA and tehB

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.65  E-value=5.2e-16  Score=135.81  Aligned_cols=95  Identities=26%  Similarity=0.401  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-----------ceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE-----------GDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-----------~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +..|||+|||+|++++.|+..|..|+|+|+++.|++.|++....           +.+.+.|+.. +   .+.||.|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-~---~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-L---TGKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-c---ccccceeeeH
Confidence            47899999999999999999999999999999999999987321           3455556532 2   3459999999


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .+++|+.+           +..|+..+.+.|+|||++++++
T Consensus       166 evleHV~d-----------p~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  166 EVLEHVKD-----------PQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             HHHHHHhC-----------HHHHHHHHHHHhCCCCceEeee
Confidence            99999988           7899999999999999999964

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.64  E-value=7e-15  Score=127.83  Aligned_cols=129  Identities=21%  Similarity=0.358  Sum_probs=101.6

Q ss_pred             hhhccccccchhH--HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhc
Q 043626           18 TEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALER   92 (291)
Q Consensus        18 ~~a~~Y~~~~~~~--~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~   92 (291)
                      ..+..|+......  ..+......+++.+...+   +.+|||+|||+|.++..++..+   ..++++|+++.+++.+.++
T Consensus         7 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~   83 (223)
T TIGR01934         7 RIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFK---GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK   83 (223)
T ss_pred             HHHhhhhHHHHHHhcccHHHHHHHHHHHhccCC---CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHH
Confidence            5666776653221  112345556677776654   6799999999999999998875   3899999999999999887


Q ss_pred             CC---cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           93 EV---EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        93 ~~---~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ..   .+.++.+|+.+ .++..++||+|+++.+++|+.+           +..+++.+.+.|+|||++++..
T Consensus        84 ~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934        84 SELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRNVTD-----------IQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             hccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCCccc-----------HHHHHHHHHHHcCCCcEEEEEE
Confidence            63   47888899844 6677789999999999998866           6789999999999999999753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.64  E-value=5.4e-16  Score=119.13  Aligned_cols=91  Identities=29%  Similarity=0.444  Sum_probs=76.4

Q ss_pred             EEEEcCCCchhHHHHHHcC-----CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEEC-Cchh
Q 043626           55 LLDIGCGSGLSGETLSENG-----HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQ  124 (291)
Q Consensus        55 VLDiGcGsG~~~~~L~~~g-----~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~  124 (291)
                      |||+|||+|..+..+....     ..++|+|+|+.|++.++++.    ..++++++|+ ..+++..++||+|++. .+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence            7999999999999999874     89999999999999999887    4689999999 4477778899999995 4599


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCc
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGA  155 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG  155 (291)
                      |+.+         ..+..+|+++.++|+|||
T Consensus        80 ~~~~---------~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLSP---------EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSSH---------HHHHHHHHHHHHTEEEEE
T ss_pred             CCCH---------HHHHHHHHHHHHHhCCCC
Confidence            8743         347899999999999998

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.63  E-value=6.4e-15  Score=132.86  Aligned_cols=120  Identities=25%  Similarity=0.347  Sum_probs=96.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|..+..++.. +  .+|+|+|+|+.|++.|+++.     ..+.++.+|+ ..+++.+++||+|+++.++
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v~  156 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCVI  156 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCcc
Confidence            679999999999988777764 3  57999999999999998753     3467888998 5577878899999999999


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC--------------------hHHHHHHHHHHHHcCCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES--------------------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~--------------------~~~~~~i~~~~~~aGF~~  183 (291)
                      +|+++           ...+|.+++++|+|||++++......                    ......+..++..+||..
T Consensus       157 ~~~~d-----------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~  225 (272)
T PRK11873        157 NLSPD-----------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD  225 (272)
T ss_pred             cCCCC-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence            98876           56899999999999999998532110                    113446777888889986

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=2.4e-14  Score=121.76  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|.++..++..+  .+|+|+|+|+.|++.++++.     .++.++++|+.+ ++ ..++||+|+|+. ++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~~-~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-FQ-HEEQFDVITSRA-LA  119 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-cc-ccCCccEEEehh-hh
Confidence            5699999999999999988664  68999999999998887542     247889999854 43 357999999875 33


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +              +..+++.++++|+|||.+++...+....+...+.+.+...||..
T Consensus       120 ~--------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~  164 (181)
T TIGR00138       120 S--------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP  164 (181)
T ss_pred             C--------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence            3              45678889999999999999987666666666666666677764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.62  E-value=1.9e-14  Score=121.98  Aligned_cols=133  Identities=21%  Similarity=0.242  Sum_probs=101.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||+|||+|.++..++..+.+++++|+|+.|++.++++.    ..+.++.+|+...   ..++||+|+++..+++..
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCCCc
Confidence            568999999999999999999889999999999999998864    2467788887442   246999999998887665


Q ss_pred             cccccC----------CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          128 NADKAS----------HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       128 ~~~~~~----------~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      +.....          ......+..++..+.++|+|||.+++......  +...+...+.+.||....+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~~  166 (179)
T TIGR00537        97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYEIVAER  166 (179)
T ss_pred             chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEEEEEEe
Confidence            432211          01122367899999999999999998764332  3567788889999987555444

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.61  E-value=8.7e-17  Score=122.89  Aligned_cols=91  Identities=33%  Similarity=0.444  Sum_probs=60.7

Q ss_pred             EEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCCC-CCCcccEEEECCchhhhc
Q 043626           56 LDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLGL-RPGVVDGAISISAVQWLC  127 (291)
Q Consensus        56 LDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~~-~~~~fD~Vis~~~l~~l~  127 (291)
                      ||||||+|.++..+.+.  +.+++|+|+|+.|++.|+++...     ...+..+..+.... ..++||+|++++++||+.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999999999988  58999999999999888776543     12333332222222 236999999999999996


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARA  157 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~l  157 (291)
                      +           +..++++++++|+|||+|
T Consensus        81 ~-----------~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 D-----------IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ------------HHHHHHHHTTT-TSS-EE
T ss_pred             h-----------HHHHHHHHHHHcCCCCCC
Confidence            5           789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.61  E-value=5.5e-14  Score=120.09  Aligned_cols=112  Identities=18%  Similarity=0.139  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|..+..++..  +.+|+|+|+|+.|++.|+++.     .++.++.+|+.+ ++. .++||+|+++..  
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~-~~~-~~~fDlV~~~~~--  121 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE-FGQ-EEKFDVVTSRAV--  121 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh-CCC-CCCccEEEEccc--
Confidence            679999999999999988864  489999999999999998754     237889999854 555 679999998742  


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                        .+           +..++..++++|+|||++++...+.   ....+..+.+..|..-
T Consensus       122 --~~-----------~~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~  164 (187)
T PRK00107        122 --AS-----------LSDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKV  164 (187)
T ss_pred             --cC-----------HHHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceE
Confidence              22           5689999999999999999987554   3444555666667764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.60  E-value=6.9e-15  Score=142.74  Aligned_cols=137  Identities=18%  Similarity=0.220  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCC-CCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQ-GLGLR  110 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~-~~~~~  110 (291)
                      .....+++.+...+   +.+|||||||+|.++..|++.+.+++|+|+|+.|++.+....   .++.++++|+.. .++++
T Consensus        24 ~~~~~il~~l~~~~---~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~  100 (475)
T PLN02336         24 EERPEILSLLPPYE---GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS  100 (475)
T ss_pred             hhhhHHHhhcCccC---CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence            33456677766544   569999999999999999999999999999999999886532   357889999853 45777


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-------------CCChHHHHHHHHHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-------------PESVAQRELILGAAM  177 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-------------~~~~~~~~~i~~~~~  177 (291)
                      .++||+|+++.+++|+.+         ..+..++..++++|+|||++++.-.             |........+...+.
T Consensus       101 ~~~fD~I~~~~~l~~l~~---------~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  171 (475)
T PLN02336        101 DGSVDLIFSNWLLMYLSD---------KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFK  171 (475)
T ss_pred             CCCEEEEehhhhHHhCCH---------HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHH
Confidence            889999999999999955         2267899999999999999998521             111123667888899


Q ss_pred             HcCCCC
Q 043626          178 RAGFAG  183 (291)
Q Consensus       178 ~aGF~~  183 (291)
                      ++||..
T Consensus       172 ~~~~~~  177 (475)
T PLN02336        172 ECHTRD  177 (475)
T ss_pred             Hheecc
Confidence            999874

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.60  E-value=1.9e-14  Score=135.86  Aligned_cols=121  Identities=23%  Similarity=0.330  Sum_probs=100.8

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--ceEEEccC
Q 043626           27 SRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--GDLLLGDM  103 (291)
Q Consensus        27 ~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~  103 (291)
                      ..+...|......+++.+.+.+   +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++...  +++...|.
T Consensus       146 ~~L~~Aq~~k~~~l~~~l~l~~---g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~  222 (383)
T PRK11705        146 DTLEEAQEAKLDLICRKLQLKP---GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY  222 (383)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence            4466778888888999988876   789999999999999999876 68999999999999999987643  56777776


Q ss_pred             CCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          104 GQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       104 ~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .. +   +++||.|+|+.+++|+..         ..+..+|+.++++|+|||.++++...
T Consensus       223 ~~-l---~~~fD~Ivs~~~~ehvg~---------~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        223 RD-L---NGQFDRIVSVGMFEHVGP---------KNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             hh-c---CCCCCEEEEeCchhhCCh---------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            32 2   478999999999999843         22678999999999999999998654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.60  E-value=5.4e-14  Score=123.90  Aligned_cols=145  Identities=20%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-CCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-LRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~~~~~fD~Vis~~~  122 (291)
                      ..+|||||||+|.++..++.+ . .+++|||+++.|.+.|+++..      .+++++.|+.+... ....+||+||||..
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            679999999999999999988 4 899999999999999998753      37999999965432 33457999999965


Q ss_pred             hhhhccccccC---------CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-cEEEeCCCC
Q 043626          123 VQWLCNADKAS---------HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-GVVVDYPHS  192 (291)
Q Consensus       123 l~~l~~~~~~~---------~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-~~~~~~p~~  192 (291)
                      +.-...  ...         |.....+..+++.+.++||+||.+.+..   .++.+.+|...+.+.+|.. .++..||..
T Consensus       125 yf~~~~--~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~ei~~~l~~~~~~~k~i~~V~p~~  199 (248)
T COG4123         125 YFKQGS--RLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAEIIELLKSYNLEPKRIQFVYPKI  199 (248)
T ss_pred             CCCCcc--ccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---cHHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence            543222  222         3333346899999999999999999998   6678889999999999997 556666666


Q ss_pred             CCCCcEEEE
Q 043626          193 SKSRKEFLV  201 (291)
Q Consensus       193 ~~~~~~~l~  201 (291)
                      .+.....|+
T Consensus       200 ~k~A~~vLv  208 (248)
T COG4123         200 GKAANRVLV  208 (248)
T ss_pred             CCcceEEEE
Confidence            544444433

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.60  E-value=5.8e-14  Score=119.82  Aligned_cols=135  Identities=20%  Similarity=0.214  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ  105 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~  105 (291)
                      ...+...+++.+.+.+   +.+|||||||+|.++..++..+  .+++++|+|+.|++.|+++.     ..+.++.+|+..
T Consensus        16 ~~~~r~~~~~~l~~~~---~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~   92 (187)
T PRK08287         16 KEEVRALALSKLELHR---AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI   92 (187)
T ss_pred             hHHHHHHHHHhcCCCC---CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence            3455666778887765   6799999999999999998874  69999999999999998754     246778887632


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcE
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGV  185 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~  185 (291)
                        ++ .++||+|++.....+              +..++..++++|+|||++++....  ..+...+...+.+.||....
T Consensus        93 --~~-~~~~D~v~~~~~~~~--------------~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287         93 --EL-PGKADAIFIGGSGGN--------------LTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             --hc-CcCCCEEEECCCccC--------------HHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence              22 468999998765433              456888999999999999987532  34556777889999998644


Q ss_pred             EEeC
Q 043626          186 VVDY  189 (291)
Q Consensus       186 ~~~~  189 (291)
                      +..+
T Consensus       154 ~~~~  157 (187)
T PRK08287        154 CVQL  157 (187)
T ss_pred             EEEE
Confidence            4333

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.60  E-value=1e-14  Score=132.74  Aligned_cols=98  Identities=22%  Similarity=0.253  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||||||+|..+..|+..|..|+|+|+|+.|++.++++..    .+.+...|+.. .++ +++||+|+++.+++|+.
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~~-~~~fD~I~~~~vl~~l~  198 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-ASI-QEEYDFILSTVVLMFLN  198 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-ccc-cCCccEEEEcchhhhCC
Confidence            5699999999999999999999999999999999998876532    46777888743 333 67899999999999874


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .         .....++.++.++|+|||++++.
T Consensus       199 ~---------~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        199 R---------ERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             H---------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            2         23678999999999999997664

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.59  E-value=1.5e-14  Score=126.58  Aligned_cols=123  Identities=22%  Similarity=0.269  Sum_probs=97.8

Q ss_pred             eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +|||||||+|.++..+++..  ..++|+|+|+.+++.++++..      .+.++..|+... ++ +++||+|+++.+++|
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l~~   79 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVIHH   79 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHHHh
Confidence            79999999999999998874  789999999999999988653      358888888443 44 468999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------hHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------VAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      +.+           ...+|++++++|+|||.+++......             ......+...+.++||......+.
T Consensus        80 ~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~  145 (224)
T smart00828       80 IKD-----------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA  145 (224)
T ss_pred             CCC-----------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence            976           67999999999999999998643210             113456788899999986444443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.59  E-value=4.6e-14  Score=111.31  Aligned_cols=112  Identities=19%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQG  106 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~  106 (291)
                      ..+...+++.+.+..   +.+|||||||+|..+..+++..  .+|+++|+|+.+++.++++.     ..+.++..|+...
T Consensus         5 ~~~~~~~~~~~~~~~---~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   81 (124)
T TIGR02469         5 REVRALTLSKLRLRP---GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA   81 (124)
T ss_pred             HHHHHHHHHHcCCCC---CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc
Confidence            345556777777665   5699999999999999999873  68999999999999987653     3467777886443


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .+...++||.|++.....+              ...+++.+++.|+|||.+++.++
T Consensus        82 ~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        82 LEDSLPEPDRVFIGGSGGL--------------LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ChhhcCCCCEEEECCcchh--------------HHHHHHHHHHHcCCCCEEEEEec
Confidence            4444568999998755432              45889999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.58  E-value=4.9e-14  Score=123.17  Aligned_cols=111  Identities=23%  Similarity=0.331  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhCC--CCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCC
Q 043626           33 QAKLSERALELLAL--PDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~--~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~  104 (291)
                      ...+.+.+++.+..  ..   +.+|||||||+|.++..++..+..++|+|+|+.|+..|+++..      .+.+.++|+.
T Consensus        38 ~~~~~~~~~~~l~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~  114 (219)
T TIGR02021        38 RAAMRRKLLDWLPKDPLK---GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL  114 (219)
T ss_pred             HHHHHHHHHHHHhcCCCC---CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            34566777877763  33   6799999999999999999998999999999999999988653      4678888874


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      . ++   ++||+|++..+++|++.         ..+..++..+.+++++++.+.+
T Consensus       115 ~-~~---~~fD~ii~~~~l~~~~~---------~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       115 S-LC---GEFDIVVCMDVLIHYPA---------SDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             h-CC---CCcCEEEEhhHHHhCCH---------HHHHHHHHHHHHHhCCCEEEEE
Confidence            3 33   78999999999988732         2367889999999987765554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.57  E-value=6.2e-14  Score=122.21  Aligned_cols=101  Identities=21%  Similarity=0.238  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc-----------------CCcceEEEccCCCCCCCCCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER-----------------EVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~-----------------~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      +.+|||+|||.|..+..|+++|+.|+|||+|+.+++.+...                 ...++++++|+.+.-+...+.|
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f  114 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV  114 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence            57999999999999999999999999999999999986331                 1247889999854322224679


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+|+...+++|++         ......++..+.++|+|||.+++..
T Consensus       115 D~i~D~~~~~~l~---------~~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       115 DAVYDRAALIALP---------EEMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CEEEechhhccCC---------HHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            9999988888873         3335689999999999999866653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.57  E-value=2.1e-14  Score=124.23  Aligned_cols=136  Identities=23%  Similarity=0.240  Sum_probs=101.7

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--C
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--L  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~  109 (291)
                      ...+++.. .   ...|||||||+|.++..|++..  ..|+|+|+|+.|++.|+++.     .++.++++|+...++  +
T Consensus        32 ~~~~~~~~-~---~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~  107 (202)
T PRK00121         32 DWAELFGN-D---APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF  107 (202)
T ss_pred             CHHHHcCC-C---CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence            34455544 2   5699999999999999998763  68999999999999998753     357889999723344  6


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .+++||+|++++..+|.....   +........+++.++++|+|||.+++.+.  +......+.+.+...|+..
T Consensus       108 ~~~~~D~V~~~~~~p~~~~~~---~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        108 PDGSLDRIYLNFPDPWPKKRH---HKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             CccccceEEEECCCCCCCccc---cccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCcccc
Confidence            678999999987766643210   11111135789999999999999998763  4456778888888898864

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.56  E-value=1.7e-14  Score=123.01  Aligned_cols=109  Identities=20%  Similarity=0.294  Sum_probs=83.1

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCCCCCccc
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      +++.+...+   +.++||||||.|..+..|+++|+.|+++|+|+..++.+.+.    ...+...+.|+.+ ..+ ++.||
T Consensus        22 v~~a~~~~~---~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~~~-~~~yD   96 (192)
T PF03848_consen   22 VLEAVPLLK---PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-FDF-PEEYD   96 (192)
T ss_dssp             HHHHCTTS----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-BS--TTTEE
T ss_pred             HHHHHhhcC---CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-ccc-cCCcC
Confidence            344444444   67999999999999999999999999999999988876543    3447888999854 444 47899


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +|+|..+++|+.-         .....++..+...++|||++++..+
T Consensus        97 ~I~st~v~~fL~~---------~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   97 FIVSTVVFMFLQR---------ELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             EEEEESSGGGS-G---------GGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEEEeccCCH---------HHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            9999999999843         2367899999999999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.56  E-value=1.1e-13  Score=121.89  Aligned_cols=101  Identities=19%  Similarity=0.332  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +..|||||||+|.++..+++.+..++++|+++.++..++++..    .++++..|+........+.||+|++..+++|+.
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~  128 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP  128 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence            6799999999999999999988899999999999999887532    356777776433223457999999999999987


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      +           ...++..+.+.|+|||.+++....
T Consensus       129 ~-----------~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        129 D-----------PASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             C-----------HHHHHHHHHHHcCCCcEEEEEecC
Confidence            6           568899999999999999987643

>TIGR03438 probable methyltransferase

Probab=99.56  E-value=6.7e-14  Score=128.27  Aligned_cols=145  Identities=19%  Similarity=0.243  Sum_probs=102.7

Q ss_pred             CCCCCCCCCcccCCchhhccccccchhH---------HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-
Q 043626            3 NRPELIAPPEIFYDDTEARKYTSSSRII---------DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-   72 (291)
Q Consensus         3 ~~pe~~~ppe~fy~~~~a~~Y~~~~~~~---------~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-   72 (291)
                      +++....|+..||++.-+.-|+.-+...         .+.......+++.+  +.   +..|||+|||+|..+..|++. 
T Consensus        11 ~~~~k~lp~~~~yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~--~~---~~~iLELGcGtG~~t~~Ll~~l   85 (301)
T TIGR03438        11 TQSPKTLPPKYFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAAT--GA---GCELVELGSGSSRKTRLLLDAL   85 (301)
T ss_pred             cCCCCCCCchhcccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh--CC---CCeEEecCCCcchhHHHHHHhh
Confidence            3455678999999987776665543311         23334444444444  22   568999999999999999887 


Q ss_pred             --CCeEEEEeCCHHHHHHHHhcC----C--cceEEEccCCCCCCCCCC----cccEEEECCchhhhccccccCCchHHHH
Q 043626           73 --GHQWIGLDISQSMLNIALERE----V--EGDLLLGDMGQGLGLRPG----VVDGAISISAVQWLCNADKASHEPRLRL  140 (291)
Q Consensus        73 --g~~v~gvDis~~ml~~a~~~~----~--~~~~~~~D~~~~~~~~~~----~fD~Vis~~~l~~l~~~~~~~~~p~~~l  140 (291)
                        +..++++|+|+.||+.|.++.    +  .+.++++|+.+.+++...    ...++++.++++++.         ....
T Consensus        86 ~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~---------~~e~  156 (301)
T TIGR03438        86 RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT---------PEEA  156 (301)
T ss_pred             ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC---------HHHH
Confidence              579999999999999998763    2  246689999665443332    233455556777763         2336


Q ss_pred             HHHHHHHHHhccCCcEEEEEE
Q 043626          141 KAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       141 ~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ..+|+.++++|+|||.+++.+
T Consensus       157 ~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       157 VAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             HHHHHHHHHhcCCCCEEEEec
Confidence            799999999999999999865

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK04266 fibrillarin; Provisional

Probab=99.55  E-value=4.9e-13  Score=117.55  Aligned_cols=130  Identities=15%  Similarity=0.049  Sum_probs=93.2

Q ss_pred             HhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCC---CCCCCCcc
Q 043626           43 LLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQG---LGLRPGVV  114 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~---~~~~~~~f  114 (291)
                      .+.+.+   +.+|||+|||+|.++..|++..  ..|+|+|+++.|++.+.++.   .++.++.+|+...   .++ .++|
T Consensus        67 ~l~i~~---g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~  142 (226)
T PRK04266         67 NFPIKK---GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV  142 (226)
T ss_pred             hCCCCC---CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence            466665   7799999999999999999873  68999999999998665442   3578888998542   122 3569


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-------CChHHHHHHHHHHHHcCCCCcEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-------ESVAQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-------~~~~~~~~i~~~~~~aGF~~~~~~  187 (291)
                      |+|++.....|.             ...++.+++++|||||.+++.++.       ......+.....+..+||+....+
T Consensus       143 D~i~~d~~~p~~-------------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~  209 (226)
T PRK04266        143 DVIYQDVAQPNQ-------------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV  209 (226)
T ss_pred             CEEEECCCChhH-------------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            999965332111             345789999999999999996432       111223345688999999975555


Q ss_pred             eC
Q 043626          188 DY  189 (291)
Q Consensus       188 ~~  189 (291)
                      +.
T Consensus       210 ~l  211 (226)
T PRK04266        210 DL  211 (226)
T ss_pred             cC
Confidence            54

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.55  E-value=5.6e-14  Score=126.95  Aligned_cols=108  Identities=25%  Similarity=0.305  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-----CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-----HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG  106 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-----~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~  106 (291)
                      ++..+.+.+.+.+.. .   ..+|||||||+|.++..|++..     ..++|+|+|+.|++.|.++..++.++.+|+ ..
T Consensus        70 l~~~i~~~l~~~l~~-~---~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~  144 (272)
T PRK11088         70 LRDAVANLLAERLDE-K---ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HR  144 (272)
T ss_pred             HHHHHHHHHHHhcCC-C---CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-cc
Confidence            444444444444331 2   5689999999999999988652     379999999999999999888899999998 55


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +||.+++||+|+++.+.                  ..+.+++++|+|||++++...
T Consensus       145 lp~~~~sfD~I~~~~~~------------------~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        145 LPFADQSLDAIIRIYAP------------------CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             CCCcCCceeEEEEecCC------------------CCHHHHHhhccCCCEEEEEeC
Confidence            78989999999987542                  235678999999999998764

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.54  E-value=1.7e-13  Score=119.16  Aligned_cols=133  Identities=21%  Similarity=0.189  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~  121 (291)
                      +..|||||||+|.++..+++..   ..|+|||+++ |     ....++.++++|+....       ++..++||+|+|+.
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~  125 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM  125 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence            6799999999999999998873   6899999988 3     23356889999986531       25578999999998


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                      +++|..+..............+|..++++|+|||.+++.++...  ....+.. ..+..|.. +.+..|.+.+
T Consensus       126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~--~~~~~l~-~l~~~f~~-v~~~Kp~ssr  194 (209)
T PRK11188        126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE--GFDEYLR-EIRSLFTK-VKVRKPDSSR  194 (209)
T ss_pred             CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc--CHHHHHH-HHHhCceE-EEEECCcccc
Confidence            88876432100000000135789999999999999999766543  2223332 23446876 5555666644

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.54  E-value=5.6e-14  Score=119.10  Aligned_cols=100  Identities=26%  Similarity=0.321  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc---ceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE---GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~---~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      -.++||+|||.|.++..|+.++..++++|+|+.+++.|+++...   +.+.+.|+.+..  ++++||+||++.+++||.+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGSSS
T ss_pred             cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcCCC
Confidence            46899999999999999999999999999999999999998754   899999996644  4799999999999999954


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                              ...+..++..+...|.|||.+|+..
T Consensus       122 --------~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  122 --------AEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             --------HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence                    2337889999999999999999964

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.54  E-value=1.3e-13  Score=124.07  Aligned_cols=100  Identities=13%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCCch----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhcC---------------------------
Q 043626           52 PRLLLDIGCGSGL----SGETLSEN-------GHQWIGLDISQSMLNIALERE---------------------------   93 (291)
Q Consensus        52 ~~~VLDiGcGsG~----~~~~L~~~-------g~~v~gvDis~~ml~~a~~~~---------------------------   93 (291)
                      +.+|||+|||+|.    ++..|++.       +..|+|+|+|+.||+.|++..                           
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            5799999999996    34445443       358999999999999998753                           


Q ss_pred             -----CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           94 -----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        94 -----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                           ..+.|.++|+.+ .+++.++||+|+|..+++|+.+         .....++..++++|+|||.+++..
T Consensus       180 ~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~~---------~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      180 KPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFDE---------PTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             ChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCCH---------HHHHHHHHHHHHHhCCCeEEEEEC
Confidence                 136788889854 4556789999999999999853         225689999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.54  E-value=3.1e-13  Score=119.96  Aligned_cols=140  Identities=29%  Similarity=0.320  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+.. .   +.+|||+|||+|.++..++..  ...++|+|+|+.+++.|+.+..     .+.++.+|+..  
T Consensus        75 ~l~~~~l~~~~~-~---~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--  148 (251)
T TIGR03534        75 ELVEAALERLKK-G---PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE--  148 (251)
T ss_pred             HHHHHHHHhccc-C---CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc--
Confidence            455566665532 2   568999999999999999987  4699999999999999987642     37888999855  


Q ss_pred             CCCCCcccEEEECCchhhhcc-----ccccCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626          108 GLRPGVVDGAISISAVQWLCN-----ADKASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELI  172 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~-----~~~~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i  172 (291)
                      ++..++||+|+++..+....+     .....++|...          +..++..+.++|+|||.+++.+.   ..+...+
T Consensus       149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~~~~~~~  225 (251)
T TIGR03534       149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---YDQGEAV  225 (251)
T ss_pred             cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---ccHHHHH
Confidence            345689999999855432111     11112233332          35789999999999999999873   3466778


Q ss_pred             HHHHHHcCCCC
Q 043626          173 LGAAMRAGFAG  183 (291)
Q Consensus       173 ~~~~~~aGF~~  183 (291)
                      .+.+.++||..
T Consensus       226 ~~~l~~~gf~~  236 (251)
T TIGR03534       226 RALFEAAGFAD  236 (251)
T ss_pred             HHHHHhCCCCc
Confidence            88899999986

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.54  E-value=5.2e-13  Score=120.32  Aligned_cols=141  Identities=28%  Similarity=0.311  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      .+.+.++..+...+   +.+|||+|||+|.++..++...  ..++|+|+|+.+++.|+++..     .+.++.+|+...+
T Consensus        95 ~l~~~~~~~~~~~~---~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~  171 (275)
T PRK09328         95 ELVEWALEALLLKE---PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL  171 (275)
T ss_pred             HHHHHHHHhccccC---CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC
Confidence            34444544443333   6799999999999999999875  899999999999999998753     4788999984433


Q ss_pred             CCCCCcccEEEECCchhhh-----ccccccCCchH----------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626          108 GLRPGVVDGAISISAVQWL-----CNADKASHEPR----------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI  172 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l-----~~~~~~~~~p~----------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i  172 (291)
                        ..++||+|+++....-.     ...+...++|.          ..+..++..+.++|+|||.+++.+..   .+...+
T Consensus       172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~  246 (275)
T PRK09328        172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAV  246 (275)
T ss_pred             --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHH
Confidence              35799999997432100     01111123333          33577899999999999999998743   456678


Q ss_pred             HHHHHHcCCCC
Q 043626          173 LGAAMRAGFAG  183 (291)
Q Consensus       173 ~~~~~~aGF~~  183 (291)
                      ...+.+.||..
T Consensus       247 ~~~l~~~gf~~  257 (275)
T PRK09328        247 RALLAAAGFAD  257 (275)
T ss_pred             HHHHHhCCCce
Confidence            88888999985

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.54  E-value=4e-13  Score=115.78  Aligned_cols=130  Identities=21%  Similarity=0.239  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQ  105 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~  105 (291)
                      ++...++..+.+.+   +..|||+|||+|.++..++..   +.+++++|+++.|++.++++.      .++.++.+|+.+
T Consensus        27 ~~r~~~l~~l~~~~---~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~  103 (198)
T PRK00377         27 EIRALALSKLRLRK---GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE  103 (198)
T ss_pred             HHHHHHHHHcCCCC---cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence            44444456666665   679999999999999888764   368999999999999887653      246788888755


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .++...+.||.|++.....   +           +..++..+.++|+|||++++...  ..++...+...+.+.||..
T Consensus       104 ~l~~~~~~~D~V~~~~~~~---~-----------~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        104 ILFTINEKFDRIFIGGGSE---K-----------LKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNL  165 (198)
T ss_pred             hHhhcCCCCCEEEECCCcc---c-----------HHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCe
Confidence            4443357899999854221   1           56789999999999999997543  4567788889999999953

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.53  E-value=2.5e-13  Score=121.36  Aligned_cols=144  Identities=24%  Similarity=0.291  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGL-  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~-  109 (291)
                      .+.+.+++.+.....  +.+|||+|||+|.++..++..  +..++|+|+|+.+++.|+++..  ...++.+|+.+.++. 
T Consensus        72 ~Lv~~~l~~~~~~~~--~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~  149 (251)
T TIGR03704        72 FLVDEAAALARPRSG--TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA  149 (251)
T ss_pred             HHHHHHHHhhcccCC--CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchh
Confidence            455555555432221  458999999999999999876  4689999999999999998753  257888998554431 


Q ss_pred             CCCcccEEEECCchhhh-----ccccccCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626          110 RPGVVDGAISISAVQWL-----CNADKASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILG  174 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l-----~~~~~~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~  174 (291)
                      ..+.||+||++....-.     ..++...++|...          +..++..+.++|+|||++++.+..   .+...+..
T Consensus       150 ~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~~  226 (251)
T TIGR03704       150 LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAVE  226 (251)
T ss_pred             cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHHH
Confidence            13579999998543100     0112223344333          458899999999999999998843   46678888


Q ss_pred             HHHHcCCCC
Q 043626          175 AAMRAGFAG  183 (291)
Q Consensus       175 ~~~~aGF~~  183 (291)
                      .+.+.||..
T Consensus       227 ~l~~~g~~~  235 (251)
T TIGR03704       227 AFARAGLIA  235 (251)
T ss_pred             HHHHCCCCc
Confidence            999999987

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.52  E-value=1.7e-13  Score=118.86  Aligned_cols=107  Identities=21%  Similarity=0.248  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQ  105 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~  105 (291)
                      .+...+++.+...+   +.+|||||||+|..+..+++.   +.+|+++|+++.|++.|+++..      .+.++.+|+.+
T Consensus        59 ~~~~~~~~~l~~~~---~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~  135 (205)
T PRK13944         59 HMVAMMCELIEPRP---GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR  135 (205)
T ss_pred             HHHHHHHHhcCCCC---CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence            45667788887665   679999999999999988875   3699999999999999987642      26788899865


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .++ ..++||+|++..++++++                 ..+.+.|+|||++++.+.
T Consensus       136 ~~~-~~~~fD~Ii~~~~~~~~~-----------------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        136 GLE-KHAPFDAIIVTAAASTIP-----------------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             CCc-cCCCccEEEEccCcchhh-----------------HHHHHhcCcCcEEEEEEc
Confidence            444 357999999998877652                 257889999999998764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.51  E-value=1.6e-13  Score=115.52  Aligned_cols=105  Identities=25%  Similarity=0.340  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCC----c-ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH--QWIGLDISQSMLNIALEREV----E-GDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~----~-~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      ..+|||+|||+|.++..++..+.  .++++|+|+.+++.++++..    + +.++..|+.+.++  ++.||+|+|+..++
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPFH  109 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---SB
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccchh
Confidence            56999999999999999999873  59999999999999988642    2 7788999865444  78999999997754


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .-.+      .....+..++....+.|+|||.+++.....
T Consensus       110 ~~~~------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  110 AGGD------DGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             TTSH------CHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             cccc------cchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            3221      233347899999999999999998866543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=3.6e-13  Score=121.08  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=96.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHH--hcCC--cceEEE--ccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIAL--EREV--EGDLLL--GDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~--~~~~--~~~~~~--~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|..+..++..| ..|+|+|.+.-.+....  ++..  ...+..  ..+ +.+|. .+.||.|+|..||.
T Consensus       116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~MGVLY  193 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFSMGVLY  193 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEEeeehh
Confidence            6799999999999999999998 67999999987654422  2222  222222  233 45666 78999999999999


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE-----------cCCCh----------HHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI-----------YPESV----------AQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~-----------~~~~~----------~~~~~i~~~~~~aGF~~  183 (291)
                      |..+           ....|..+..+|++||.+++.+           .|...          .....+..++.++||..
T Consensus       194 Hrr~-----------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~  262 (315)
T PF08003_consen  194 HRRS-----------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD  262 (315)
T ss_pred             ccCC-----------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence            9987           6688999999999999999852           22211          25778999999999998


Q ss_pred             cEEEeCC
Q 043626          184 GVVVDYP  190 (291)
Q Consensus       184 ~~~~~~p  190 (291)
                      ..+++..
T Consensus       263 v~~v~~~  269 (315)
T PF08003_consen  263 VRCVDVS  269 (315)
T ss_pred             EEEecCc
Confidence            6777663

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK06922 hypothetical protein; Provisional

Probab=99.51  E-value=1.5e-13  Score=135.11  Aligned_cols=109  Identities=20%  Similarity=0.307  Sum_probs=86.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCC--CCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLG--LRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|..+..++..  +..++|+|+|+.|++.|+++..    .+.++++|+.+ ++  |++++||+|++++++
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~d-Lp~~fedeSFDvVVsn~vL  497 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAIN-LSSSFEKESVDTIVYSSIL  497 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHh-CccccCCCCEEEEEEchHH
Confidence            679999999999999888875  4799999999999999987642    35778889744 55  778999999999999


Q ss_pred             hhhccccc--cCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          124 QWLCNADK--ASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       124 ~~l~~~~~--~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ||+++...  ...-+...+..+|++++++|||||.+++..
T Consensus       498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            98753110  001123457899999999999999999964

>PRK06202 hypothetical protein; Provisional

Probab=99.50  E-value=1.5e-13  Score=121.21  Aligned_cols=97  Identities=19%  Similarity=0.113  Sum_probs=76.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|.++..|++.    |  .+++|+|+|+.|++.|+++..  ++.+...+. ..+++.+++||+|+|+.++
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~~~l  139 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSNHFL  139 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec-ccccccCCCccEEEECCee
Confidence            679999999999998888752    3  589999999999999988753  356666665 3456667899999999999


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ||+.+.         .+..++++++++++ ++.++.
T Consensus       140 hh~~d~---------~~~~~l~~~~r~~~-~~~~i~  165 (232)
T PRK06202        140 HHLDDA---------EVVRLLADSAALAR-RLVLHN  165 (232)
T ss_pred             ecCChH---------HHHHHHHHHHHhcC-eeEEEe
Confidence            999652         25689999999998 444333

>PRK14967 putative methyltransferase; Provisional

Probab=99.50  E-value=8.3e-13  Score=115.88  Aligned_cols=140  Identities=21%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~  113 (291)
                      .++..+.+.+   +.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++..    .+.++.+|+...  +..++
T Consensus        27 ~~l~~~~~~~---~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~  101 (223)
T PRK14967         27 DALAAEGLGP---GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRP  101 (223)
T ss_pred             HHHHhcccCC---CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCC
Confidence            3344444444   5799999999999999999877 499999999999998887542    367788887543  34679


Q ss_pred             ccEEEECCchhhhcccccc----------CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          114 VDGAISISAVQWLCNADKA----------SHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~----------~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ||+|+++..+.........          ..+....+..++..++++|++||++++......  +...+...+...||.-
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~~~  179 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGLDA  179 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCCCe
Confidence            9999998543322111000          112223367789999999999999998653322  3445677788888875


Q ss_pred             cE
Q 043626          184 GV  185 (291)
Q Consensus       184 ~~  185 (291)
                      ..
T Consensus       180 ~~  181 (223)
T PRK14967        180 EV  181 (223)
T ss_pred             EE
Confidence            33

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.50  E-value=7e-13  Score=121.90  Aligned_cols=113  Identities=21%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----------cceEEEccCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----------EGDLLLGDMG  104 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~  104 (291)
                      .+.+.+++.+....+..+.+|||||||+|.++..|++.|..|+|+|+|+.|++.|+++..          .+.+...|+.
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            445666766654210016799999999999999999999999999999999999988753          2467777863


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      . +   .++||+|+|..+++|+++         .....++..+.. +.+||. ++.+.
T Consensus       208 ~-l---~~~fD~Vv~~~vL~H~p~---------~~~~~ll~~l~~-l~~g~l-iIs~~  250 (315)
T PLN02585        208 S-L---SGKYDTVTCLDVLIHYPQ---------DKADGMIAHLAS-LAEKRL-IISFA  250 (315)
T ss_pred             h-c---CCCcCEEEEcCEEEecCH---------HHHHHHHHHHHh-hcCCEE-EEEeC
Confidence            2 2   578999999999988754         224466766765 445544 55543

>PRK14968 putative methyltransferase; Provisional

Probab=99.50  E-value=1.7e-12  Score=109.95  Aligned_cols=128  Identities=19%  Similarity=0.244  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----c--ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----E--GDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++..+.+++|+|+|+.|++.++++..     .  +.++.+|+.+.  +...+||+|+++..+.
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPPYL  101 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECCCcC
Confidence            6699999999999999999999999999999999999976531     2  67788887553  3455899999986543


Q ss_pred             hhcc----------ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          125 WLCN----------ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~----------~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +...          ...........+..+++.+.++|+|||.+++.....  ...+.+..++.++||..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~~~  168 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGFEA  168 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCCee
Confidence            2110          000111223446789999999999999998876432  23456788899999976

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.50  E-value=1.6e-14  Score=124.11  Aligned_cols=133  Identities=24%  Similarity=0.363  Sum_probs=102.6

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCccc
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVD  115 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD  115 (291)
                      ...++..++...   -.++||+|||||..+..|...-..++|||||.+|++.|.++...-.+.+.|+...++ ..+..||
T Consensus       114 l~emI~~~~~g~---F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D  190 (287)
T COG4976         114 LAEMIGKADLGP---FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD  190 (287)
T ss_pred             HHHHHHhccCCc---cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence            334444444333   469999999999999999999899999999999999999987655555555533333 4567899


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CC-----------hHHHHHHHHHHHHcCCC
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ES-----------VAQRELILGAAMRAGFA  182 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~-----------~~~~~~i~~~~~~aGF~  182 (291)
                      +|++..|+.++-+           +..+|-.+...|+|||.|.|+.-.  ..           ......+...+...||+
T Consensus       191 Li~AaDVl~YlG~-----------Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~  259 (287)
T COG4976         191 LIVAADVLPYLGA-----------LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLE  259 (287)
T ss_pred             chhhhhHHHhhcc-----------hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCce
Confidence            9999999999977           899999999999999999997421  11           11344677788888887


Q ss_pred             C
Q 043626          183 G  183 (291)
Q Consensus       183 ~  183 (291)
                      .
T Consensus       260 ~  260 (287)
T COG4976         260 V  260 (287)
T ss_pred             E
Confidence            5

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.49  E-value=8.6e-13  Score=115.28  Aligned_cols=100  Identities=20%  Similarity=0.271  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||+|||+|.++..++..+..++++|+++.+++.++.+..     .+.+...|+.+.....+++||+|++..+++|+
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~  125 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV  125 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence            6799999999999999999888889999999999999887542     36777777743222224799999999999998


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .+           ...++..+.++|++||.+++...
T Consensus       126 ~~-----------~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       126 PD-----------PQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             CC-----------HHHHHHHHHHhcCCCcEEEEEec
Confidence            76           67899999999999999998654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.48  E-value=1.1e-12  Score=123.66  Aligned_cols=127  Identities=22%  Similarity=0.239  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.|++.|+++..    .+.++.+|+.+......++||+|+||..  +
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP--Y  329 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP--Y  329 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC--C
Confidence            459999999999999988865  4799999999999999988753    4788999985432112468999999853  4


Q ss_pred             hccccc------cCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          126 LCNADK------ASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~------~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ++..+.      ..++|...          +..++..+.+.|+|||.+++.+.   ..|.+.+.+.+.+.||..
T Consensus       330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---~~Q~e~V~~ll~~~Gf~~  400 (423)
T PRK14966        330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---FDQGAAVRGVLAENGFSG  400 (423)
T ss_pred             CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---ccHHHHHHHHHHHCCCcE
Confidence            433221      11345444          35788888999999999999884   357778888888999975

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.48  E-value=1e-12  Score=119.40  Aligned_cols=124  Identities=20%  Similarity=0.142  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..++..  +..++|+|+|+.+++.|+++..      .+.++.+|+.+.+  +.++||+|+|+...
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIVSNPPY  199 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEEECCCC
Confidence            568999999999999999987  3799999999999999988642      3678999985533  35689999998332


Q ss_pred             ------hhhccccccCCchHH----------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          124 ------QWLCNADKASHEPRL----------RLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       124 ------~~l~~~~~~~~~p~~----------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                            .++.. +. .++|..          .+..++..+.++|+|||++++.+..   .+ +.+...+...||..
T Consensus       200 ~~~~~~~~l~~-~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~---~~-~~v~~~~~~~~~~~  269 (284)
T TIGR03533       200 VDAEDMADLPA-EY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN---SM-EALEEAYPDVPFTW  269 (284)
T ss_pred             CCccchhhCCH-hh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---CH-HHHHHHHHhCCCce
Confidence                  11111 11 244543          2478899999999999999999853   23 46777778888754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.48  E-value=3.6e-13  Score=120.28  Aligned_cols=113  Identities=23%  Similarity=0.224  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      +.+|||||||+|.++..++..|. .++|+|+|+.|++.|+++.....+  .+. ..++....+||+|+++...+.     
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~--~~~-~~~~~~~~~fD~Vvani~~~~-----  191 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV--ELN-VYLPQGDLKADVIVANILANP-----  191 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC--Cce-EEEccCCCCcCEEEEcCcHHH-----
Confidence            67999999999999998888874 599999999999999887542111  000 001111227999999754332     


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                               +..++..+.++|+|||.++++...  ..+...+...+.+.||..
T Consensus       192 ---------~~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~  233 (250)
T PRK00517        192 ---------LLELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTL  233 (250)
T ss_pred             ---------HHHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEE
Confidence                     457889999999999999998543  346678888999999975

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.47  E-value=1e-12  Score=114.94  Aligned_cols=99  Identities=21%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh-c----------------CCcceEEEccCCCCCCCCCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE-R----------------EVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~-~----------------~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      +.+|||+|||.|..+..|+++|+.|+|||+|+.+++.+.. +                ...++++++|+.+..+...+.|
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f  117 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV  117 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence            5699999999999999999999999999999999998643 2                1236788899855333233689


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      |+|+...+++|++         ......++..+.++|+|||.+++
T Consensus       118 d~v~D~~~~~~l~---------~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        118 DAVYDRAALIALP---------EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             eEEEehHhHhhCC---------HHHHHHHHHHHHHHcCCCCeEEE
Confidence            9999988888883         33357899999999999997554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.47  E-value=3.1e-13  Score=116.16  Aligned_cols=125  Identities=20%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC--CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL--GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~  122 (291)
                      ...|||||||+|.++..++...  ..++|+|+++.|++.|.++.     .++.++++|+....  .+..+++|.|++++.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            4599999999999999999874  79999999999999987653     35788999984422  144569999999887


Q ss_pred             hhhhccccccCCchH-HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC-CC
Q 043626          123 VQWLCNADKASHEPR-LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG-FA  182 (291)
Q Consensus       123 l~~l~~~~~~~~~p~-~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG-F~  182 (291)
                      ..|...    .|+.. .....++..++++|+|||.+++.+.  +....+.+.+.+...+ |.
T Consensus        97 dpw~k~----~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--~~~~~~~~~~~~~~~~~f~  152 (194)
T TIGR00091        97 DPWPKK----RHNKRRITQPHFLKEYANVLKKGGVIHFKTD--NEPLFEDMLKVLSENDLFE  152 (194)
T ss_pred             CcCCCC----CccccccCCHHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHhCCCeE
Confidence            776432    11111 1125799999999999999999873  3334555666666655 44

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.47  E-value=1e-12  Score=119.79  Aligned_cols=125  Identities=20%  Similarity=0.226  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~  107 (291)
                      .+...+++.+.. +   +.+|||+|||+|.++..++..| ..++|+|+|+.|++.|+++...      +.+...+.   .
T Consensus       147 ~l~l~~l~~~~~-~---g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~---~  219 (288)
T TIGR00406       147 SLCLEWLEDLDL-K---DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL---E  219 (288)
T ss_pred             HHHHHHHHhhcC-C---CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc---c
Confidence            444444444433 2   5799999999999999998887 5899999999999999886531      33444442   2


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ++..++||+|+++...++              +..++..+.++|+|||.++++...  ..+...+...+.+. |..
T Consensus       220 ~~~~~~fDlVvan~~~~~--------------l~~ll~~~~~~LkpgG~li~sgi~--~~~~~~v~~~~~~~-f~~  278 (288)
T TIGR00406       220 QPIEGKADVIVANILAEV--------------IKELYPQFSRLVKPGGWLILSGIL--ETQAQSVCDAYEQG-FTV  278 (288)
T ss_pred             cccCCCceEEEEecCHHH--------------HHHHHHHHHHHcCCCcEEEEEeCc--HhHHHHHHHHHHcc-Cce
Confidence            334679999999866543              457899999999999999997653  34667777777665 754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.47  E-value=9.7e-13  Score=112.92  Aligned_cols=89  Identities=22%  Similarity=0.330  Sum_probs=73.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-CCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.+|||||||+|.++..+++. +..++|+|+|+.|++.+..+  .+.++.+|+.+.+ ++.+++||+|+++.+++|+.+ 
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d-   90 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN-   90 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC-
Confidence            569999999999999999765 46789999999999998764  3678888885544 466789999999999999976 


Q ss_pred             cccCCchHHHHHHHHHHHHHhccC
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLAR  153 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~Lkp  153 (291)
                                ...+++++.+.+++
T Consensus        91 ----------~~~~l~e~~r~~~~  104 (194)
T TIGR02081        91 ----------PEEILDEMLRVGRH  104 (194)
T ss_pred             ----------HHHHHHHHHHhCCe
Confidence                      56778888777654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.47  E-value=1.4e-12  Score=114.27  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhCC---CCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCC
Q 043626           35 KLSERALELLAL---PDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQ  105 (291)
Q Consensus        35 ~~~~~~lelL~~---~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~  105 (291)
                      .+.+.+++.+..   .+   +.+|||||||+|.++..|++.+..++|+|+|+.|++.|+++..      .+.+..+|+  
T Consensus        47 ~~~~~~~~~l~~~~~~~---~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--  121 (230)
T PRK07580         47 RMRDTVLSWLPADGDLT---GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL--  121 (230)
T ss_pred             HHHHHHHHHHHhcCCCC---CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--
Confidence            445556666643   33   6799999999999999999999889999999999999988643      357777774  


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEE
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARA  157 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~l  157 (291)
                        +...++||+|++..+++|+++         ..+..++..+.+.+++++.+
T Consensus       122 --~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        122 --ESLLGRFDTVVCLDVLIHYPQ---------EDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             --hhccCCcCEEEEcchhhcCCH---------HHHHHHHHHHHhhcCCeEEE
Confidence              233578999999999988743         23678888888877544443

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.47  E-value=5.4e-13  Score=116.39  Aligned_cols=108  Identities=22%  Similarity=0.191  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC---eEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH---QWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ  105 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~---~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~  105 (291)
                      ..+...+++++.+.+   +.+|||||||+|.++..|++...   +|+++|+++.+++.|+++.     .++.++++|+..
T Consensus        63 p~~~~~~~~~l~~~~---~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~  139 (215)
T TIGR00080        63 PHMVAMMTELLELKP---GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHHHHhCCCC---cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence            345677888888766   78999999999999999998753   5999999999999998764     247889999855


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ..+ ...+||+|++..+..++                 ...+.+.|+|||++++.+.
T Consensus       140 ~~~-~~~~fD~Ii~~~~~~~~-----------------~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       140 GWE-PLAPYDRIYVTAAGPKI-----------------PEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             CCc-ccCCCCEEEEcCCcccc-----------------cHHHHHhcCcCcEEEEEEc
Confidence            433 34689999988666544                 2357889999999999763

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.46  E-value=2.1e-12  Score=119.80  Aligned_cols=136  Identities=19%  Similarity=0.079  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~  109 (291)
                      .++..++++...++   +..|||+|||+|.++..++..+..++|+|+++.|+..|+.+..     ++.++.+|+. .+++
T Consensus       169 ~la~~~~~l~~~~~---g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~  244 (329)
T TIGR01177       169 KLARAMVNLARVTE---GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPL  244 (329)
T ss_pred             HHHHHHHHHhCCCC---cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCc
Confidence            45566666666655   6799999999999998888888999999999999999887642     3578899984 4777


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      ..++||+|+++..+..-.  ....+....-...++..+.++|+|||++++.+....     .+...+..+||
T Consensus       245 ~~~~~D~Iv~dPPyg~~~--~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~  309 (329)
T TIGR01177       245 SSESVDAIATDPPYGRST--TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR  309 (329)
T ss_pred             ccCCCCEEEECCCCcCcc--cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc
Confidence            778999999985442210  001112223357899999999999999998874432     33456888999

This family is found exclusively in the Archaea.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.46  E-value=7.8e-13  Score=115.26  Aligned_cols=109  Identities=19%  Similarity=0.185  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      +..+...+++.+.+.+   +.+|||||||+|.++..+++..   .+++++|+++.+++.|+++..     ++.++.+|..
T Consensus        61 ~p~~~~~~~~~l~~~~---g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~  137 (212)
T PRK13942         61 AIHMVAIMCELLDLKE---GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT  137 (212)
T ss_pred             cHHHHHHHHHHcCCCC---cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence            4467778888888776   7899999999999999988763   699999999999999988652     4789999985


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ... ...++||+|++..+++++                 ...+.+.|+|||++++...
T Consensus       138 ~~~-~~~~~fD~I~~~~~~~~~-----------------~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        138 LGY-EENAPYDRIYVTAAGPDI-----------------PKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             cCC-CcCCCcCEEEECCCcccc-----------------hHHHHHhhCCCcEEEEEEc
Confidence            443 345789999988766543                 2346778999999999763

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.45  E-value=1.3e-12  Score=122.76  Aligned_cols=114  Identities=15%  Similarity=0.179  Sum_probs=87.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQG  106 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~  106 (291)
                      ++.+++.|....   ..+|||||||+|.++..++..+  .+|+++|+|+.|++.|+++..        .+.++..|+...
T Consensus       217 trllL~~lp~~~---~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~  293 (378)
T PRK15001        217 ARFFMQHLPENL---EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  293 (378)
T ss_pred             HHHHHHhCCccc---CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence            344666665443   4599999999999999999874  799999999999999997641        357777887443


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                        +.+++||+|+|+..+|+...      ........+|..++++|+|||.+++..
T Consensus       294 --~~~~~fDlIlsNPPfh~~~~------~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        294 --VEPFRFNAVLCNPPFHQQHA------LTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             --CCCCCEEEEEECcCcccCcc------CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence              33568999999988875421      111225689999999999999999986

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.44  E-value=2.4e-12  Score=109.95  Aligned_cols=123  Identities=15%  Similarity=0.107  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~  121 (291)
                      +..|||||||+|.++..++...   ..++++|+|+.+      ...++.++++|+.+..       .+..++||+|+++.
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~  106 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA  106 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence            6799999999999999888763   479999999965      2345778888875421       13467899999975


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.+..................++..++++|+|||++++..+..  .....+...+... |..
T Consensus       107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~--~~~~~~l~~l~~~-~~~  165 (188)
T TIGR00438       107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG--EEIDEYLNELRKL-FEK  165 (188)
T ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC--ccHHHHHHHHHhh-hce
Confidence            4321000000001111224688999999999999999976442  2334455554443 654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.44  E-value=1.5e-12  Score=113.31  Aligned_cols=109  Identities=22%  Similarity=0.191  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      +..+...+++++.+.+   +.+|||||||+|.++..|+..+.+++++|+++.+++.|+++..     ++.++.+|..+.+
T Consensus        63 ~p~~~~~l~~~l~~~~---~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  139 (212)
T PRK00312         63 QPYMVARMTELLELKP---GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW  139 (212)
T ss_pred             cHHHHHHHHHhcCCCC---CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence            3456677788887765   6899999999999999888887799999999999999987642     4788889875543


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      + ..++||+|++..+++++                 ...+.+.|+|||++++.+.
T Consensus       140 ~-~~~~fD~I~~~~~~~~~-----------------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 P-AYAPFDRILVTAAAPEI-----------------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             C-cCCCcCEEEEccCchhh-----------------hHHHHHhcCCCcEEEEEEc
Confidence            3 24789999998766554                 2356789999999999875

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.44  E-value=6.1e-12  Score=108.14  Aligned_cols=131  Identities=15%  Similarity=0.143  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ  105 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~  105 (291)
                      +......+++.+...+   +.+|||+|||+|.++..++..  +..++++|+|+.|++.++++.     .++.++.+|+..
T Consensus        25 ~~~v~~~l~~~l~~~~---~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         25 KREVRLLLISQLRLEP---DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             HHHHHHHHHHhcCCCC---CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            4455556777776655   679999999999999988865  479999999999999998764     246788888744


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .++.....+|.++....    .+           +..++..+++.|+|||++++....  .+....+.+.+...+..+
T Consensus       102 ~~~~~~~~~d~v~~~~~----~~-----------~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~~~~  162 (196)
T PRK07402        102 CLAQLAPAPDRVCIEGG----RP-----------IKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQARN  162 (196)
T ss_pred             HHhhCCCCCCEEEEECC----cC-----------HHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcCCCC
Confidence            33322334676654211    11           568899999999999999998743  345555666666655544

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.43  E-value=4.2e-12  Score=115.43  Aligned_cols=140  Identities=21%  Similarity=0.206  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~  106 (291)
                      .+.+.+++.+....+  ..+|||+|||+|.++..++...  ..++|+|+|+.+++.|+++..      .+.++.+|+.+.
T Consensus       100 ~lv~~~l~~~~~~~~--~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~  177 (284)
T TIGR00536       100 ELVEKALASLISQNP--ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP  177 (284)
T ss_pred             HHHHHHHHHhhhcCC--CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc
Confidence            445555554422221  3689999999999999999874  699999999999999998642      278899998553


Q ss_pred             CCCCCCcccEEEECCchhhhccc------cccCCchHH----------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626          107 LGLRPGVVDGAISISAVQWLCNA------DKASHEPRL----------RLKAFFGSLYRCLARGARAVFQIYPESVAQRE  170 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~------~~~~~~p~~----------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~  170 (291)
                        +...+||+|||+..  +++..      ....++|..          .+..++..+.+.|+|||.+++.+..   .|..
T Consensus       178 --~~~~~fDlIvsNPP--yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---~q~~  250 (284)
T TIGR00536       178 --LAGQKIDIIVSNPP--YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---WQQK  250 (284)
T ss_pred             --CcCCCccEEEECCC--CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---cHHH
Confidence              33458999999833  22221      122345543          3578899999999999999999854   4555


Q ss_pred             HHHHHHH-HcCCCC
Q 043626          171 LILGAAM-RAGFAG  183 (291)
Q Consensus       171 ~i~~~~~-~aGF~~  183 (291)
                      .+.+.+. ..||..
T Consensus       251 ~~~~~~~~~~~~~~  264 (284)
T TIGR00536       251 SLKELLRIKFTWYD  264 (284)
T ss_pred             HHHHHHHhcCCCce
Confidence            6666666 467864

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PTZ00146 fibrillarin; Provisional

Probab=99.43  E-value=6.3e-12  Score=113.53  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHH---HHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHH----HHHHHHhcCCcceEEE
Q 043626           31 DIQAKLSERAL---ELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQS----MLNIALEREVEGDLLL  100 (291)
Q Consensus        31 ~iq~~~~~~~l---elL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~----ml~~a~~~~~~~~~~~  100 (291)
                      ..++.++..++   +.+.+.+   +.+|||+|||+|.++..+++..   ..|++||+|+.    |++.+..+ .++.++.
T Consensus       112 p~rSKlaa~i~~g~~~l~Ikp---G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~  187 (293)
T PTZ00146        112 PFRSKLAAAIIGGVANIPIKP---GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPII  187 (293)
T ss_pred             CcccHHHHHHHCCcceeccCC---CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEE
Confidence            34556666664   3344554   6799999999999999999873   68999999986    45555443 5678889


Q ss_pred             ccCCCC--CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------hHH-HHH
Q 043626          101 GDMGQG--LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------VAQ-REL  171 (291)
Q Consensus       101 ~D~~~~--~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------~~~-~~~  171 (291)
                      .|+...  +.+..++||+|++..+.   ++          ....++.++.++|||||.+++.+-...      +++ ...
T Consensus       188 ~Da~~p~~y~~~~~~vDvV~~Dva~---pd----------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~  254 (293)
T PTZ00146        188 EDARYPQKYRMLVPMVDVIFADVAQ---PD----------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFAS  254 (293)
T ss_pred             CCccChhhhhcccCCCCEEEEeCCC---cc----------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHH
Confidence            997542  22234689999987642   11          144666789999999999999543211      111 122


Q ss_pred             HHHHHHHcCCCCcEEEeC
Q 043626          172 ILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       172 i~~~~~~aGF~~~~~~~~  189 (291)
                      -.+++.++||.....++.
T Consensus       255 ev~~L~~~GF~~~e~v~L  272 (293)
T PTZ00146        255 EVQKLKKEGLKPKEQLTL  272 (293)
T ss_pred             HHHHHHHcCCceEEEEec
Confidence            137789999997555555

>PHA03411 putative methyltransferase; Provisional

Probab=99.43  E-value=1.8e-12  Score=115.88  Aligned_cols=129  Identities=13%  Similarity=0.074  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|||+|||+|.++..++.+  +.+|+|+|+|+.|++.++++..++.++++|+.+..  ...+||+||++..+.++...
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~  142 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE--SNEKFDVVISNPPFGKINTT  142 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--ccCCCcEEEEcCCccccCch
Confidence            469999999999999888775  47999999999999999998888899999985432  25689999999999886543


Q ss_pred             cccCCchH-------HH--HHHHHHHHHHhccCCcEEEEEEcCCC----hHHHHHHHHHHHHcCCC
Q 043626          130 DKASHEPR-------LR--LKAFFGSLYRCLARGARAVFQIYPES----VAQRELILGAAMRAGFA  182 (291)
Q Consensus       130 ~~~~~~p~-------~~--l~~~l~~l~~~LkpgG~lv~~~~~~~----~~~~~~i~~~~~~aGF~  182 (291)
                      +....-..       +.  +..++.....+|+|+|.+.+.+....    .-.......++...||.
T Consensus       143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence            32221111       11  46888999999999998887643222    22355677888899986

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.42  E-value=9.9e-13  Score=113.98  Aligned_cols=98  Identities=27%  Similarity=0.434  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcc------eEEEccCCCCCCCC--CCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEG------DLLLGDMGQGLGLR--PGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~------~~~~~D~~~~~~~~--~~~fD~Vis~~~l  123 (291)
                      ...++|+|||+|..+..++++..+|+|+|+|+.||++|.+..+..      .+...++   .++.  +++.|+|+|.-++
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~---v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM---VDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccc---ccccCCCcceeeehhhhhH
Confidence            348999999999999999999999999999999999998876542      2222222   3333  7899999999999


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCc-EEEEEEcCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGA-RAVFQIYPE  164 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG-~lv~~~~~~  164 (291)
                      ||+.            +.+|++.++++|++.| .+.+..|..
T Consensus       111 HWFd------------le~fy~~~~rvLRk~Gg~iavW~Y~d  140 (261)
T KOG3010|consen  111 HWFD------------LERFYKEAYRVLRKDGGLIAVWNYND  140 (261)
T ss_pred             Hhhc------------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence            9974            6899999999999866 777777764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.3e-12  Score=116.54  Aligned_cols=131  Identities=25%  Similarity=0.282  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc--ceE-EEccCCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE--GDL-LLGDMGQGLG  108 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~--~~~-~~~D~~~~~~  108 (291)
                      ...|+-.+++.+..+    +.+|||+|||||.++...++.| ..++|+|++|-+++.|++|...  +.. ...-......
T Consensus       148 TT~lcL~~Le~~~~~----g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~  223 (300)
T COG2264         148 TTSLCLEALEKLLKK----GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE  223 (300)
T ss_pred             hHHHHHHHHHHhhcC----CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence            346666777766553    6799999999999999999999 5799999999999999987532  221 1111111122


Q ss_pred             CCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          109 LRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       109 ~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ... ++||+||+|= |-.+             +..+...+++.|+|||+++++=.-  .++.+.+.+.+.++||.-
T Consensus       224 ~~~~~~~DvIVANI-LA~v-------------l~~La~~~~~~lkpgg~lIlSGIl--~~q~~~V~~a~~~~gf~v  283 (300)
T COG2264         224 VPENGPFDVIVANI-LAEV-------------LVELAPDIKRLLKPGGRLILSGIL--EDQAESVAEAYEQAGFEV  283 (300)
T ss_pred             hcccCcccEEEehh-hHHH-------------HHHHHHHHHHHcCCCceEEEEeeh--HhHHHHHHHHHHhCCCeE
Confidence            233 5999999983 3222             668899999999999999997533  357888999999999975

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.42  E-value=2.2e-12  Score=120.05  Aligned_cols=114  Identities=19%  Similarity=0.209  Sum_probs=87.5

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~  110 (291)
                      ++.+++.|....   ..+|||||||+|.++..+++.+  ..|+++|+|+.|++.|+++..    ...++..|+...   .
T Consensus       185 t~lLl~~l~~~~---~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~  258 (342)
T PRK09489        185 SQLLLSTLTPHT---KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---I  258 (342)
T ss_pred             HHHHHHhccccC---CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---c
Confidence            345566655433   4589999999999999999875  589999999999999987542    356777776432   2


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .++||+|||+..+|+..+.      .......++..+.+.|+|||.+++...
T Consensus       259 ~~~fDlIvsNPPFH~g~~~------~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        259 KGRFDMIISNPPFHDGIQT------SLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             CCCccEEEECCCccCCccc------cHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            5789999999998864321      122367899999999999999998763

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=8.5e-12  Score=113.11  Aligned_cols=120  Identities=27%  Similarity=0.349  Sum_probs=93.1

Q ss_pred             eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +|||||||||.++..++..+  ..|+|+|||+.+++.|++|...     +.++..|+...+   .++||+||||  ..|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsN--PPYi  187 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSN--PPYI  187 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeC--CCCC
Confidence            79999999999999999987  4999999999999999887643     244555653333   3499999999  5566


Q ss_pred             cccc------ccCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          127 CNAD------KASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       127 ~~~~------~~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      +..+      ...++|...          ..+++..+.+.|+|||.+++...   ..+.+.+.+.+.+.||
T Consensus       188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~q~~~v~~~~~~~~~  255 (280)
T COG2890         188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LTQGEAVKALFEDTGF  255 (280)
T ss_pred             CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CCcHHHHHHHHHhcCC
Confidence            6541      112455444          48889999999999999999983   4567788889999995

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.41  E-value=6.8e-12  Score=115.16  Aligned_cols=108  Identities=12%  Similarity=0.099  Sum_probs=84.4

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG  108 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~  108 (291)
                      ...+++.+.+.+   ..+|||||||+|.++..+++.+  .+++++|+ +.+++.++++..      .+.++.+|+.+ .+
T Consensus       138 ~~~l~~~~~~~~---~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~~  212 (306)
T TIGR02716       138 IQLLLEEAKLDG---VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK-ES  212 (306)
T ss_pred             HHHHHHHcCCCC---CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC-CC
Confidence            455666666655   6799999999999999999885  78999998 789998877542      26789999854 23


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++  .+|+|++..++|++.+         .....+|+++++.|+|||++++.
T Consensus       213 ~~--~~D~v~~~~~lh~~~~---------~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       213 YP--EADAVLFCRILYSANE---------QLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             CC--CCCEEEeEhhhhcCCh---------HHHHHHHHHHHHhcCCCCEEEEE
Confidence            32  4799998888886633         22568999999999999999885

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.40  E-value=7.1e-12  Score=122.42  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|.++..++..  +..++|+|+|+.+++.|+++..      .+.++.+|+.+.+  ..++||+|||+.. 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNPP-  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVSNPP-  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEECCC-
Confidence            468999999999999988865  4799999999999999998742      3678888874433  3568999999843 


Q ss_pred             hhhcccc-------ccCCchHH----------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          124 QWLCNAD-------KASHEPRL----------RLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       124 ~~l~~~~-------~~~~~p~~----------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                       ++...+       ...++|..          .+..++..+.++|+|||.+++.+.   ..+.+.+.+.+.+.||..
T Consensus       216 -Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~~q~~~v~~~~~~~g~~~  288 (506)
T PRK01544        216 -YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---FKQEEAVTQIFLDHGYNI  288 (506)
T ss_pred             -CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---CchHHHHHHHHHhcCCCc
Confidence             332211       22244443          346788899999999999999874   347778888888899975

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.40  E-value=1.3e-12  Score=112.33  Aligned_cols=145  Identities=23%  Similarity=0.315  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-C--cceEEEccCCCCC
Q 043626           33 QAKLSERALELL-ALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-V--EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL-~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-~--~~~~~~~D~~~~~  107 (291)
                      ..++..++++.+ ..++.  ...++|||||-|.+...|...+ ..++-+|.|..|++.++... +  ....+.+|- +.+
T Consensus        55 keeig~rlaDrvfD~kk~--fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE-E~L  131 (325)
T KOG2940|consen   55 KEEIGDRLADRVFDCKKS--FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE-EFL  131 (325)
T ss_pred             HHHHHHHHHHHHHHHhhh--CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecch-hcc
Confidence            334444555444 22331  4489999999999999999887 78999999999999998753 2  346677884 778


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-----------------------
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-----------------------  164 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-----------------------  164 (291)
                      +|..+++|+||++..+||+.+           +...+..+...|||+|.|+..+.+.                       
T Consensus       132 df~ens~DLiisSlslHW~Nd-----------LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSp  200 (325)
T KOG2940|consen  132 DFKENSVDLIISSLSLHWTND-----------LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISP  200 (325)
T ss_pred             cccccchhhhhhhhhhhhhcc-----------CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCC
Confidence            999999999999999999988           7889999999999999998743222                       


Q ss_pred             ---ChHHHHHHHHHHHHcCCCC------cEEEeCCC
Q 043626          165 ---SVAQRELILGAAMRAGFAG------GVVVDYPH  191 (291)
Q Consensus       165 ---~~~~~~~i~~~~~~aGF~~------~~~~~~p~  191 (291)
                         ...+...+-.++.++||.-      .+++.||.
T Consensus       201 hiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~  236 (325)
T KOG2940|consen  201 HISPFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPR  236 (325)
T ss_pred             CcChhhhhhhhhhHHhhcCcccceecccceeecCch
Confidence               2236778888999999973      45566664

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.38  E-value=9.7e-13  Score=103.12  Aligned_cols=106  Identities=23%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC-CCCCCcccEEEECCchh
Q 043626           53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL-GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~  124 (291)
                      .+|||+|||+|.++..+++.+ .+++|+|+++..++.++.+..      .++++.+|+.... .+..++||+|+++..+.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~   81 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG   81 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence            489999999999999999998 999999999999999998763      3689999984433 36689999999996654


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ......   .........++..+.++|+|||.+++.+
T Consensus        82 ~~~~~~---~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   82 PRSGDK---AALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             SBTT-------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccc---hhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            221110   1111136789999999999999999875

...

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.37  E-value=2.8e-12  Score=108.50  Aligned_cols=94  Identities=22%  Similarity=0.359  Sum_probs=79.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.+|||+|||.|.+...|.+. +...+|+|++++.+..|.++.  +.++++|+.++++ |++++||.||++.+||++.+ 
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-   90 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--VSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR-   90 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--CCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence            679999999999999999874 789999999999999988876  4589999988875 88999999999999999966 


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                                +..++.++   |+-|..++++|
T Consensus        91 ----------P~~vL~Em---lRVgr~~IVsF  109 (193)
T PF07021_consen   91 ----------PDEVLEEM---LRVGRRAIVSF  109 (193)
T ss_pred             ----------HHHHHHHH---HHhcCeEEEEe
Confidence                      45666665   45566777776

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.36  E-value=5.1e-11  Score=100.28  Aligned_cols=127  Identities=18%  Similarity=0.186  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      ++..-.+..|.+.+   ++.++|||||||..+..++..+  .+++++|-++.+++...+|..     ++.++.+|..+.+
T Consensus        21 EIRal~ls~L~~~~---g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L   97 (187)
T COG2242          21 EIRALTLSKLRPRP---GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHHHHHhhCCCC---CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence            55556677777776   7899999999999999999544  899999999999998887653     4788999987766


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                      +-.+ +||.|+....- .              +..+|+.+...|+|||++|+...  ..+....+.+++.+.||.
T Consensus        98 ~~~~-~~daiFIGGg~-~--------------i~~ile~~~~~l~~ggrlV~nai--tlE~~~~a~~~~~~~g~~  154 (187)
T COG2242          98 PDLP-SPDAIFIGGGG-N--------------IEEILEAAWERLKPGGRLVANAI--TLETLAKALEALEQLGGR  154 (187)
T ss_pred             cCCC-CCCEEEECCCC-C--------------HHHHHHHHHHHcCcCCeEEEEee--cHHHHHHHHHHHHHcCCc
Confidence            5323 89999987652 1              67899999999999999999864  345667788889999995

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.36  E-value=3.3e-12  Score=106.32  Aligned_cols=142  Identities=17%  Similarity=0.246  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626           32 IQAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLL  100 (291)
Q Consensus        32 iq~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~  100 (291)
                      .+..++..+++...   ..+.  ..+|||+|||+|.+...|++.|  ...+|+|.|+.+++.|+....      .+.|.+
T Consensus        47 ae~riv~wl~d~~~~~rv~~~--A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q  124 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQ--ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ  124 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhccc--ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence            45566666666654   3331  3499999999999999999987  569999999999999875432      289999


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                      .|+.++ .+..+.||+|+--.++..+.-.   ...|..++...+..+.++|+|||++++.-...   ...++.+.+...|
T Consensus       125 ~DI~~~-~~~~~qfdlvlDKGT~DAisLs---~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~---T~dELv~~f~~~~  197 (227)
T KOG1271|consen  125 LDITDP-DFLSGQFDLVLDKGTLDAISLS---PDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF---TKDELVEEFENFN  197 (227)
T ss_pred             eeccCC-cccccceeEEeecCceeeeecC---CCCcccceeeehhhHhhccCCCcEEEEEecCc---cHHHHHHHHhcCC
Confidence            999765 6778999999988777655321   12455556778899999999999999976433   3445666766666


Q ss_pred             CC
Q 043626          181 FA  182 (291)
Q Consensus       181 F~  182 (291)
                      |.
T Consensus       198 f~  199 (227)
T KOG1271|consen  198 FE  199 (227)
T ss_pred             eE
Confidence            64

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.36  E-value=8.6e-12  Score=116.93  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC-CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL-GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l  123 (291)
                      ...+||||||+|.++..++...  ..++|+|+++.|+..|.++.     .++.++.+|+...+ .++++++|.|++++..
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd  202 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV  202 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence            4589999999999999999874  79999999999998887653     35788999974322 4678999999999887


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA  179 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a  179 (291)
                      .|...    .| -+.....++..++++|+|||.+.+.+-.  ....+.....+.+.
T Consensus       203 PW~Kk----rH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~--~~y~~~~~e~~~~~  251 (390)
T PRK14121        203 PWDKK----PH-RRVISEDFLNEALRVLKPGGTLELRTDS--ELYFEFSLELFLKL  251 (390)
T ss_pred             Ccccc----ch-hhccHHHHHHHHHHHcCCCcEEEEEEEC--HHHHHHHHHHHHhC
Confidence            77432    12 1112378999999999999999998732  23344444555544

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.35  E-value=2.4e-11  Score=111.58  Aligned_cols=122  Identities=19%  Similarity=0.103  Sum_probs=88.9

Q ss_pred             CeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch-
Q 043626           53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV-  123 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l-  123 (291)
                      .+|||+|||+|.++..++...  ..++|+|+|+.+++.|+++..      .+.++++|+.+.+  +.++||+|+|+... 
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l--~~~~fDlIvsNPPyi  212 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL--PGRRYDLIVSNPPYV  212 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC--CCCCccEEEECCCCC
Confidence            689999999999999999873  799999999999999988742      3788999985544  35689999998322 


Q ss_pred             -----hhhccccccCCchH----------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          124 -----QWLCNADKASHEPR----------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       124 -----~~l~~~~~~~~~p~----------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                           ..+.. +. .++|.          .-...++..+.++|+|||.+++.+...   +. .+...+...||.
T Consensus       213 ~~~~~~~l~~-~~-~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~---~~-~~~~~~~~~~~~  280 (307)
T PRK11805        213 DAEDMADLPA-EY-RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS---RV-HLEEAYPDVPFT  280 (307)
T ss_pred             CccchhhcCH-hh-ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC---HH-HHHHHHhhCCCE
Confidence                 11110 01 13333          335788999999999999999988543   22 356666666653

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.34  E-value=9.4e-12  Score=113.21  Aligned_cols=127  Identities=22%  Similarity=0.295  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~  107 (291)
                      ...|+-.+++.+..+    +.+|||+|||||.++...+..| .+|+|+|+++.+++.|++|..    ...+..... .  
T Consensus       147 TT~lcl~~l~~~~~~----g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~-~--  219 (295)
T PF06325_consen  147 TTRLCLELLEKYVKP----GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS-E--  219 (295)
T ss_dssp             HHHHHHHHHHHHSST----TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT-S--
T ss_pred             HHHHHHHHHHHhccC----CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe-c--
Confidence            446666667666443    5699999999999999999999 689999999999999988753    223433221 1  


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ....+.||+|++|-...-              +..++..+.++|+|||.++++=.-.  .+...+.+.+.+ ||..
T Consensus       220 ~~~~~~~dlvvANI~~~v--------------L~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~v~~a~~~-g~~~  278 (295)
T PF06325_consen  220 DLVEGKFDLVVANILADV--------------LLELAPDIASLLKPGGYLILSGILE--EQEDEVIEAYKQ-GFEL  278 (295)
T ss_dssp             CTCCS-EEEEEEES-HHH--------------HHHHHHHCHHHEEEEEEEEEEEEEG--GGHHHHHHHHHT-TEEE
T ss_pred             ccccccCCEEEECCCHHH--------------HHHHHHHHHHhhCCCCEEEEccccH--HHHHHHHHHHHC-CCEE
Confidence            222489999999844432              5678889999999999999974433  466777888765 8864

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=9.7e-12  Score=106.74  Aligned_cols=108  Identities=22%  Similarity=0.260  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLG  108 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~  108 (291)
                      ..|..+++++|.+.+   +.+|||||||||..+..|++...+|+.+|+.+...+.|++++.     ++.+.++|-..+++
T Consensus        58 P~~vA~m~~~L~~~~---g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~  134 (209)
T COG2518          58 PHMVARMLQLLELKP---GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP  134 (209)
T ss_pred             cHHHHHHHHHhCCCC---CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence            467888999999988   8899999999999999999998899999999999999988753     47889999877665


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                       ..++||.|+...+...++.                 .+..-|++||++++-..
T Consensus       135 -~~aPyD~I~Vtaaa~~vP~-----------------~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 -EEAPYDRIIVTAAAPEVPE-----------------ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             -CCCCcCEEEEeeccCCCCH-----------------HHHHhcccCCEEEEEEc
Confidence             2479999999888776643                 46788999999999875

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.34  E-value=5.7e-12  Score=106.88  Aligned_cols=99  Identities=21%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCc-----ce-EEEccCCCCCC-CCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVE-----GD-LLLGDMGQGLG-LRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~-----~~-~~~~D~~~~~~-~~~~~fD~Vis~~~l  123 (291)
                      ...||+||||||..-...-. .+..|+++|.++.|-+.|.+...+     +. |+.++. +.+| ++++++|.||+..+|
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g-e~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG-ENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech-hcCcccccCCeeeEEEEEEE
Confidence            45789999999998877764 478999999999999988765533     44 788886 5566 789999999999888


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      -...+           ....|.++.++|+|||+++|.-+
T Consensus       156 CSve~-----------~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  156 CSVED-----------PVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             eccCC-----------HHHHHHHHHHhcCCCcEEEEEec
Confidence            65544           56789999999999999998643

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.34  E-value=1.7e-11  Score=113.41  Aligned_cols=103  Identities=19%  Similarity=0.259  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC---------------cceEEEccCCCC-----CCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV---------------EGDLLLGDMGQG-----LGLR  110 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~---------------~~~~~~~D~~~~-----~~~~  110 (291)
                      +..|||||||-|.-..-+...+ ..++|+|||...|+.|+++..               ...++.+|....     ++..
T Consensus        63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~  142 (331)
T PF03291_consen   63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR  142 (331)
T ss_dssp             T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred             CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence            6799999999999887777776 899999999999999999871               146677776432     2222


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ...||+|-|.+++||...       .......+|.++..+|+|||+++.++
T Consensus       143 ~~~FDvVScQFalHY~Fe-------se~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  143 SRKFDVVSCQFALHYAFE-------SEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             TS-EEEEEEES-GGGGGS-------SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCcceeehHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            359999999999999855       55568899999999999999999988

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=5.1e-11  Score=114.34  Aligned_cols=129  Identities=18%  Similarity=0.199  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQ  105 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~  105 (291)
                      +|...+..++..|...+   +.+|||+|||+|..+..+++.+  ..++++|+|+.|++.++++..    .+.++++|+..
T Consensus       228 iQd~~s~~~~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~  304 (427)
T PRK10901        228 VQDAAAQLAATLLAPQN---GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD  304 (427)
T ss_pred             EECHHHHHHHHHcCCCC---CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc
Confidence            45555666777777665   7799999999999999999875  599999999999999987753    35788899854


Q ss_pred             CCC-CCCCcccEEEECCchh---hh-ccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          106 GLG-LRPGVVDGAISISAVQ---WL-CNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       106 ~~~-~~~~~fD~Vis~~~l~---~l-~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ... +..++||.|++.....   .+ .+++... ..+.      .....++..+.++|+|||++++.+..
T Consensus       305 ~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        305 PAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             chhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            222 3457899999654211   11 1111111 1111      12357899999999999999988753

>PRK00811 spermidine synthase; Provisional

Probab=99.33  E-value=5.4e-11  Score=108.15  Aligned_cols=124  Identities=17%  Similarity=0.100  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCC----------cceEEEccCCCCCCCCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREV----------EGDLLLGDMGQGLGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~~~~~~~~~~fD~Vis  119 (291)
                      +.+||+||||+|.++..++++ + .+|++||+++.+++.|++.+.          .+.++.+|....+....++||+||+
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  156 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV  156 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence            679999999999999998887 4 689999999999999998653          3678888875545445679999998


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..+-++.+.       ...-...|++.+.+.|+|||.++++...  ........+...+.+. |..
T Consensus       157 D~~dp~~~~-------~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~  214 (283)
T PRK00811        157 DSTDPVGPA-------EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPI  214 (283)
T ss_pred             CCCCCCCch-------hhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCC
Confidence            754433211       1111368899999999999999987532  2344556666677776 654

>PLN03075 nicotianamine synthase; Provisional

Probab=99.31  E-value=4e-11  Score=108.67  Aligned_cols=99  Identities=15%  Similarity=0.072  Sum_probs=77.0

Q ss_pred             CCeEEEEcCCCchhHHH-HH-Hc--CCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGET-LS-EN--GHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~-L~-~~--g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||||||.|.++.. ++ .+  +..++|+|+++.+++.|++...       .+.|..+|+.+..+ ..+.||+|++.
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~~  202 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFLA  202 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEEe
Confidence            67999999998854433 33 33  3689999999999999998762       27899999855322 24789999999


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                       +++++...+         ...+|..+++.|+|||.+++..
T Consensus       203 -ALi~~dk~~---------k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 -ALVGMDKEE---------KVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             -ccccccccc---------HHHHHHHHHHhcCCCcEEEEec
Confidence             777663211         5789999999999999999976

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.30  E-value=3.8e-11  Score=100.83  Aligned_cols=109  Identities=17%  Similarity=0.100  Sum_probs=81.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCCCc
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~~~  113 (291)
                      .+.+++.+.+..   +..|||||||+|.++..+++.+..++++|+++.|++.++++..   +++++.+|+.+ +++....
T Consensus         2 ~~~i~~~~~~~~---~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~-~~~~~~~   77 (169)
T smart00650        2 IDKIVRAANLRP---GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALK-FDLPKLQ   77 (169)
T ss_pred             HHHHHHhcCCCC---cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhc-CCccccC
Confidence            356677777665   6799999999999999999998999999999999999998764   47899999844 5665667


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ||.|+++..++..          ...+..++...  .+.++|.++++.
T Consensus        78 ~d~vi~n~Py~~~----------~~~i~~~l~~~--~~~~~~~l~~q~  113 (169)
T smart00650       78 PYKVVGNLPYNIS----------TPILFKLLEEP--PAFRDAVLMVQK  113 (169)
T ss_pred             CCEEEECCCcccH----------HHHHHHHHhcC--CCcceEEEEEEH
Confidence            9999998655421          11133333321  245888888874

>PLN02672 methionine S-methyltransferase

Probab=99.30  E-value=4e-11  Score=124.61  Aligned_cols=133  Identities=13%  Similarity=0.115  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------------------cceEEEccCCCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------------------EGDLLLGDMGQGLG  108 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------------------~~~~~~~D~~~~~~  108 (291)
                      +.+|||||||+|.++..++..+  ..++|+|+|+.+++.|++|..                     .+.++++|+.+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            3589999999999999999874  689999999999999977642                     36889999865442


Q ss_pred             CCCCcccEEEECCchhhhcccccc-------CCc----------------------hHHHHHHHHHHHHHhccCCcEEEE
Q 043626          109 LRPGVVDGAISISAVQWLCNADKA-------SHE----------------------PRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~-------~~~----------------------p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .....||+||||  ..++++++..       .++                      .-.-+.+++..+.++|+|||.+++
T Consensus       199 ~~~~~fDlIVSN--PPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        199 DNNIELDRIVGC--IPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             ccCCceEEEEEC--CCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            212379999998  4455443211       122                      222237788899999999999999


Q ss_pred             EEcCCChHHHHHHH-HHHHHcCCCCcEEEeC
Q 043626          160 QIYPESVAQRELIL-GAAMRAGFAGGVVVDY  189 (291)
Q Consensus       160 ~~~~~~~~~~~~i~-~~~~~aGF~~~~~~~~  189 (291)
                      .+..   .|.+.+. .++.+.||....+...
T Consensus       277 EiG~---~q~~~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        277 NMGG---RPGQAVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             EECc---cHHHHHHHHHHHHCCCCeeEEeee
Confidence            9954   4666777 5888899987444444

>PRK04457 spermidine synthase; Provisional

Probab=99.29  E-value=8.1e-11  Score=105.83  Aligned_cols=123  Identities=15%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|.++..++..  +.++++||+++.+++.|++.+.      .+.++.+|..+.+...+++||+|++.. +
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~  145 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F  145 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C
Confidence            679999999999999999876  3789999999999999998642      367888997554443357899999752 1


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +..      ...+......|++.+.++|+|||++++.++..+.. ...+...+.+. |..
T Consensus       146 ~~~------~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~-~~~~l~~l~~~-F~~  197 (262)
T PRK04457        146 DGE------GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESS-FEG  197 (262)
T ss_pred             CCC------CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchh-HHHHHHHHHHh-cCC
Confidence            110      00011113689999999999999999987665433 34445555444 865

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.29  E-value=1e-10  Score=112.69  Aligned_cols=140  Identities=19%  Similarity=0.246  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ...+.+.+++.+...+   +.+|||+|||+|.++..|+..+..++|+|+|+.|++.|+++.     .++.++++|+.+.+
T Consensus       282 ~e~l~~~vl~~l~~~~---~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l  358 (443)
T PRK13168        282 NQKMVARALEWLDPQP---GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF  358 (443)
T ss_pred             HHHHHHHHHHHhcCCC---CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence            4567788888887654   679999999999999999999899999999999999998764     24789999985433


Q ss_pred             ---CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-
Q 043626          108 ---GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-  183 (291)
Q Consensus       108 ---~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-  183 (291)
                         ++..++||+|+++..-              ..+...+..+.+ |+|++.++++..|.   .+..=...+...||.- 
T Consensus       359 ~~~~~~~~~fD~Vi~dPPr--------------~g~~~~~~~l~~-~~~~~ivyvSCnp~---tlaRDl~~L~~~gY~l~  420 (443)
T PRK13168        359 TDQPWALGGFDKVLLDPPR--------------AGAAEVMQALAK-LGPKRIVYVSCNPA---TLARDAGVLVEAGYRLK  420 (443)
T ss_pred             hhhhhhcCCCCEEEECcCC--------------cChHHHHHHHHh-cCCCeEEEEEeChH---HhhccHHHHhhCCcEEE
Confidence               3445789999976221              113355555555 68999999998543   3222233455788875 


Q ss_pred             -cEEEe-CCCCC
Q 043626          184 -GVVVD-YPHSS  193 (291)
Q Consensus       184 -~~~~~-~p~~~  193 (291)
                       ...+| ||++.
T Consensus       421 ~i~~~DmFP~T~  432 (443)
T PRK13168        421 RAGMLDMFPHTG  432 (443)
T ss_pred             EEEEeccCCCCC
Confidence             22333 46653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.28  E-value=4.2e-11  Score=89.49  Aligned_cols=97  Identities=28%  Similarity=0.346  Sum_probs=78.3

Q ss_pred             eEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhc-----CCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           54 LLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALER-----EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~-----~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +|||+|||+|..+..++. .+..++++|+++.++..+++.     ...+.++..|+........++||+|+++.+++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            489999999999999988 458999999999999988722     1236788888855433356789999999998873 


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                               ......++..+.+.|++||.+++.
T Consensus        80 ---------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 ---------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                     122678999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.27  E-value=1.4e-10  Score=101.58  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc-----------------CCcceEEEccCCCCCC--CCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER-----------------EVEGDLLLGDMGQGLG--LRPG  112 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~-----------------~~~~~~~~~D~~~~~~--~~~~  112 (291)
                      +.+||+.|||.|.....|+++|+.|+|+|+|+.+++.+.+.                 ...++++++|+.+.-+  -..+
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~  123 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP  123 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence            57999999999999999999999999999999999997552                 1247899999855321  1136


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .||+|+-..++.+|+         ...-.+.++.+.++|+|||.+++.++
T Consensus       124 ~fD~VyDra~~~Alp---------p~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        124 VFDIWYDRGAYIALP---------NDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CcCeeeeehhHhcCC---------HHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            899999999999883         33356899999999999999887654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.27  E-value=3.2e-10  Score=109.36  Aligned_cols=139  Identities=14%  Similarity=0.069  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      |......+...+...+   +..|||+|||+|..+..+++.   ...++++|+++.+++.++++..     ++.++++|+.
T Consensus       235 qd~~s~lv~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~  311 (444)
T PRK14902        235 QDESSMLVAPALDPKG---GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR  311 (444)
T ss_pred             EChHHHHHHHHhCCCC---CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            4455555566666655   679999999999999999875   3799999999999999987642     3688899985


Q ss_pred             CCCCCCCCcccEEEECCchh---hh-ccccccCC-chHH------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626          105 QGLGLRPGVVDGAISISAVQ---WL-CNADKASH-EPRL------RLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL  173 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~---~l-~~~~~~~~-~p~~------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~  173 (291)
                      .......++||+|++.....   .+ .+++.... .+..      ....++..+.++|+|||.++.++..-...+-+...
T Consensus       312 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv  391 (444)
T PRK14902        312 KVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVI  391 (444)
T ss_pred             cccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHH
Confidence            43221137899999864211   01 01111110 1111      12568999999999999999876554444433333


Q ss_pred             H
Q 043626          174 G  174 (291)
Q Consensus       174 ~  174 (291)
                      .
T Consensus       392 ~  392 (444)
T PRK14902        392 E  392 (444)
T ss_pred             H
Confidence            3

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=1.5e-10  Score=111.40  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      |...+..+..+|...+   +.+|||+|||+|..+..+++.   ..+++++|+++.+++.++++..     ++.++++|+.
T Consensus       237 qd~~s~l~~~~l~~~~---g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~  313 (434)
T PRK14901        237 QDRSAQLVAPLLDPQP---GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR  313 (434)
T ss_pred             ECHHHHHHHHHhCCCC---cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence            4455556666676655   679999999999999999876   2689999999999999987653     4688888975


Q ss_pred             CCC---CCCCCcccEEEECC------chhhhccccccCC-chH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHH
Q 043626          105 QGL---GLRPGVVDGAISIS------AVQWLCNADKASH-EPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQ  168 (291)
Q Consensus       105 ~~~---~~~~~~fD~Vis~~------~l~~l~~~~~~~~-~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~  168 (291)
                      ...   ++..++||.|++..      ++.+-++  .... .+.      .....++.+++++|||||+++.++..-.+++
T Consensus       314 ~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~--~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E  391 (434)
T PRK14901        314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPD--ARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE  391 (434)
T ss_pred             hcccccccccccCCEEEEeCCCCcccccccCcc--hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence            422   13457899999752      2222211  1110 011      1136889999999999999998876544443


Q ss_pred             -HHHHHHHHHHc-CCCCcEE-E-eCCCCCCCCcEEEEEe
Q 043626          169 -RELILGAAMRA-GFAGGVV-V-DYPHSSKSRKEFLVLT  203 (291)
Q Consensus       169 -~~~i~~~~~~a-GF~~~~~-~-~~p~~~~~~~~~l~l~  203 (291)
                       ...+...+.+. +|..... . .+|+......+|++.+
T Consensus       392 ne~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l  430 (434)
T PRK14901        392 NEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVL  430 (434)
T ss_pred             HHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence             33344444443 4542100 0 2454444555665543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=6.8e-11  Score=113.49  Aligned_cols=141  Identities=11%  Similarity=0.131  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDM  103 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~  103 (291)
                      +|...+..+..++...+   +.+|||+|||+|..+..+++.   +..|+++|+|+.+++.++++..     .+.++++|+
T Consensus       221 ~Qd~~s~~~~~~l~~~~---g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da  297 (431)
T PRK14903        221 VQGESSQIVPLLMELEP---GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA  297 (431)
T ss_pred             EECHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence            34455555566666655   679999999999999999876   4799999999999999987753     357888887


Q ss_pred             CCCCC-CCCCcccEEEECCc---hhhhc-cccccCCchHH-------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626          104 GQGLG-LRPGVVDGAISISA---VQWLC-NADKASHEPRL-------RLKAFFGSLYRCLARGARAVFQIYPESVAQREL  171 (291)
Q Consensus       104 ~~~~~-~~~~~fD~Vis~~~---l~~l~-~~~~~~~~p~~-------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  171 (291)
                      .. ++ +..++||.|++...   +..+. +++.....+..       ....++.++++.|+|||.+++++..-.+++-+.
T Consensus       298 ~~-l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~  376 (431)
T PRK14903        298 ER-LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE  376 (431)
T ss_pred             hh-hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence            43 33 44678999997522   22221 11111111111       136679999999999999999887755544444


Q ss_pred             HHHHH
Q 043626          172 ILGAA  176 (291)
Q Consensus       172 i~~~~  176 (291)
                      ....+
T Consensus       377 vv~~f  381 (431)
T PRK14903        377 VVKRF  381 (431)
T ss_pred             HHHHH
Confidence            44433

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.24  E-value=2.2e-11  Score=105.79  Aligned_cols=110  Identities=25%  Similarity=0.314  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      +..+..+++++|.+.+   +.+|||||||||..+..|+.. +  ..|+++|+.+..++.|+++..     ++.++++|..
T Consensus        57 ~P~~~a~~l~~L~l~p---g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~  133 (209)
T PF01135_consen   57 APSMVARMLEALDLKP---GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS  133 (209)
T ss_dssp             -HHHHHHHHHHTTC-T---T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred             HHHHHHHHHHHHhcCC---CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence            4567788999999887   789999999999999999987 3  479999999999999998764     4788999975


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .+++ ..++||.|++..+...++.                 .+...|++||++++-+..
T Consensus       134 ~g~~-~~apfD~I~v~~a~~~ip~-----------------~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  134 EGWP-EEAPFDRIIVTAAVPEIPE-----------------ALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             GTTG-GG-SEEEEEESSBBSS--H-----------------HHHHTEEEEEEEEEEESS
T ss_pred             hccc-cCCCcCEEEEeeccchHHH-----------------HHHHhcCCCcEEEEEEcc
Confidence            5554 3568999999888765432                 467789999999998754

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=1.5e-10  Score=111.60  Aligned_cols=136  Identities=16%  Similarity=0.070  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      |......++.+|...+   +..|||+|||+|..+..+++.   +..++++|+|+.|++.++++..     .+.++++|+.
T Consensus       235 qd~~s~l~~~~l~~~~---g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~  311 (445)
T PRK14904        235 QNPTQALACLLLNPQP---GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR  311 (445)
T ss_pred             eCHHHHHHHHhcCCCC---CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc
Confidence            3333444555666554   679999999999999888874   3699999999999999987653     3678888985


Q ss_pred             CCCCCCCCcccEEEECC---chhhh-ccccccCC-chH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626          105 QGLGLRPGVVDGAISIS---AVQWL-CNADKASH-EPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL  173 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~---~l~~l-~~~~~~~~-~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~  173 (291)
                      .. + ..++||.|++..   ....+ .+++.... .+.      .....+|..++++|+|||++++.+..-.+.+-+...
T Consensus       312 ~~-~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v  389 (445)
T PRK14904        312 SF-S-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQI  389 (445)
T ss_pred             cc-c-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHH
Confidence            43 2 356899999631   11111 11111111 111      113468999999999999999998765544433333

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.23  E-value=9.6e-11  Score=108.05  Aligned_cols=107  Identities=20%  Similarity=0.213  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQ  105 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~  105 (291)
                      ..+...+++.+.+++   +.+|||||||+|.++..+++..   ..|+++|+++.|++.|+++..     ++.++.+|...
T Consensus        66 p~l~a~ll~~L~i~~---g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~  142 (322)
T PRK13943         66 PSLMALFMEWVGLDK---GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY  142 (322)
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence            355667777777765   6799999999999999999864   369999999999999987532     36788888744


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .. ...++||+|++...+..+                 ...+.+.|+|||++++..
T Consensus       143 ~~-~~~~~fD~Ii~~~g~~~i-----------------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        143 GV-PEFAPYDVIFVTVGVDEV-----------------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cc-cccCCccEEEECCchHHh-----------------HHHHHHhcCCCCEEEEEe
Confidence            33 334679999987665543                 224677899999999865

>PHA03412 putative methyltransferase; Provisional

Probab=99.22  E-value=1e-10  Score=102.50  Aligned_cols=105  Identities=11%  Similarity=0.072  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-----CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-----GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-----g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||+|||+|.++..++..     ...|+|+|+++.+++.|+++...+.++.+|+.. .++ .++||+||+|..+.-+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~-~~~-~~~FDlIIsNPPY~~~  127 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT-TEF-DTLFDMAISNPPFGKI  127 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc-ccc-cCCccEEEECCCCCCc
Confidence            569999999999999988864     368999999999999999998888999999843 333 5689999999766544


Q ss_pred             cccc-ccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          127 CNAD-KASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       127 ~~~~-~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ...+ ...+........++..+.+++++|+. |+
T Consensus       128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            3222 11122333356788888886666665 54

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.22  E-value=3.6e-10  Score=108.42  Aligned_cols=131  Identities=16%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc----ceE--EEccC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE----GDL--LLGDM  103 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~----~~~--~~~D~  103 (291)
                      +|...+..++..|...+   +.+|||+|||+|..+..+++..  ..++++|+++.+++.++++...    +.+  ..+|.
T Consensus       222 ~Qd~~s~~~~~~L~~~~---g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~  298 (426)
T TIGR00563       222 VQDASAQWVATWLAPQN---EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG  298 (426)
T ss_pred             EECHHHHHHHHHhCCCC---CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence            35556667777777665   6799999999999999998862  7999999999999999877532    223  45554


Q ss_pred             CCCCCC--CCCcccEEEEC------CchhhhccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHH
Q 043626          104 GQGLGL--RPGVVDGAISI------SAVQWLCNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQ  168 (291)
Q Consensus       104 ~~~~~~--~~~~fD~Vis~------~~l~~l~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~  168 (291)
                      .. .++  ..++||.|++.      .++.+.++  ... ..|.      .....+|.+++++|+|||.++.++..-++++
T Consensus       299 ~~-~~~~~~~~~fD~VllDaPcSg~G~~~~~p~--~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E  375 (426)
T TIGR00563       299 RG-PSQWAENEQFDRILLDAPCSATGVIRRHPD--IKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE  375 (426)
T ss_pred             cc-ccccccccccCEEEEcCCCCCCcccccCcc--hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence            22 222  46789999964      22332221  111 0111      1136789999999999999999877654433

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.21  E-value=2.3e-10  Score=103.06  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      |......+...|...+   +..|||+|||+|..+..+++.   ...|+++|+++.+++.++++..     ++.++..|..
T Consensus        56 qd~~s~~~~~~l~~~~---g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~  132 (264)
T TIGR00446        56 QEASSMIPPLALEPDP---PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR  132 (264)
T ss_pred             ECHHHHHHHHHhCCCC---cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence            3333334444555554   679999999999999998875   2689999999999999987652     3677888863


Q ss_pred             CCCCCCCCcccEEEECCchh---hh-ccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626          105 QGLGLRPGVVDGAISISAVQ---WL-CNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL  173 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~---~l-~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~  173 (291)
                       .++...+.||.|++.....   .+ .+++... ..+.      .....+|..+.++|+|||+++.++..-+..+-+.+.
T Consensus       133 -~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv  211 (264)
T TIGR00446       133 -VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVV  211 (264)
T ss_pred             -HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHH
Confidence             3343446799999753211   11 0111100 0111      113568999999999999999988776665545555


Q ss_pred             HHHHH
Q 043626          174 GAAMR  178 (291)
Q Consensus       174 ~~~~~  178 (291)
                      +.+.+
T Consensus       212 ~~~l~  216 (264)
T TIGR00446       212 DYLLE  216 (264)
T ss_pred             HHHHH
Confidence            55443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.2e-10  Score=103.26  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=87.5

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cc-eEEEccCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EG-DLLLGDMGQGLGL  109 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~-~~~~~D~~~~~~~  109 (291)
                      ++.+++.|....   ...|||+|||.|.++..+++..  ..++.+|+|..+++.|+++..    +. .++..|+.+... 
T Consensus       147 S~lLl~~l~~~~---~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~-  222 (300)
T COG2813         147 SRLLLETLPPDL---GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE-  222 (300)
T ss_pred             HHHHHHhCCccC---CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc-
Confidence            455677776665   4499999999999999999986  699999999999999998764    23 567777644332 


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                        ++||+||||..+|-=..      .-...-.++|....+.|++||.|.+...
T Consensus       223 --~kfd~IisNPPfh~G~~------v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         223 --GKFDLIISNPPFHAGKA------VVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             --ccccEEEeCCCccCCcc------hhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence              39999999988862111      1111134899999999999999999876

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.20  E-value=9.7e-11  Score=97.63  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=64.4

Q ss_pred             EEEeCCHHHHHHHHhcCC--------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH
Q 043626           77 IGLDISQSMLNIALEREV--------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY  148 (291)
Q Consensus        77 ~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~  148 (291)
                      +|+|+|+.||+.|+++..        +++++++|+ ..+|+.+++||+|++.++++|+.+           ...++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~d-----------~~~~l~ei~   68 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNVVD-----------RLRAMKEMY   68 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcCCC-----------HHHHHHHHH
Confidence            489999999999976532        378999998 568998999999999999999977           779999999


Q ss_pred             HhccCCcEEEEEEc
Q 043626          149 RCLARGARAVFQIY  162 (291)
Q Consensus       149 ~~LkpgG~lv~~~~  162 (291)
                      ++|||||.+++..+
T Consensus        69 rvLkpGG~l~i~d~   82 (160)
T PLN02232         69 RVLKPGSRVSILDF   82 (160)
T ss_pred             HHcCcCeEEEEEEC
Confidence            99999999987644

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.20  E-value=1.6e-10  Score=117.16  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..++..| .+|++||+|+.+++.|+++..       .+.++.+|+.+.+....++||+||++...
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~  618 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT  618 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence            5699999999999999999987 479999999999999998752       36889999754332125689999987321


Q ss_pred             hhhccccc--cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          124 QWLCNADK--ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       124 ~~l~~~~~--~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                        +.....  ........+..++..+.++|+|||.+++......   .......+.++||..
T Consensus       619 --f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---~~~~~~~~~~~g~~~  675 (702)
T PRK11783        619 --FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---FKMDEEGLAKLGLKA  675 (702)
T ss_pred             --CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---CChhHHHHHhCCCeE
Confidence              111111  1123445577889999999999999998775433   333367778889875

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.19  E-value=5.3e-10  Score=98.75  Aligned_cols=139  Identities=19%  Similarity=0.239  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccC--
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREVE------GDLLLGDM--  103 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~--  103 (291)
                      .++.+.+++.++......+..|||+|||||..+..++.. + +.++++|.|+.++..|.+|...      +.+++.+|  
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            466677777775443222568999999999998888765 3 8999999999999999987642      34443333  


Q ss_pred             --CCCCCCCCCcccEEEECCchhhhcccc-------ccCCchHHHH----------HHHHHHHHHhccCCcEEEEEEc--
Q 043626          104 --GQGLGLRPGVVDGAISISAVQWLCNAD-------KASHEPRLRL----------KAFFGSLYRCLARGARAVFQIY--  162 (291)
Q Consensus       104 --~~~~~~~~~~fD~Vis~~~l~~l~~~~-------~~~~~p~~~l----------~~~l~~l~~~LkpgG~lv~~~~--  162 (291)
                        ....+...+++|+++||  ..|+.+.|       ...++|..++          ..++.-+.+.|+|||.+.|.+.  
T Consensus       211 d~~~~~~l~~~~~dllvsN--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  211 DASDEHPLLEGKIDLLVSN--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             ccccccccccCceeEEecC--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence              23344557899999999  44555443       3345665553          6677788899999999999987  


Q ss_pred             CCChHHHHHHHH
Q 043626          163 PESVAQRELILG  174 (291)
Q Consensus       163 ~~~~~~~~~i~~  174 (291)
                      +.++.-...++.
T Consensus       289 ~~~~~lv~~~m~  300 (328)
T KOG2904|consen  289 KEHSYLVRIWMI  300 (328)
T ss_pred             ccCcHHHHHHHH
Confidence            444444444443

>PRK01581 speE spermidine synthase; Validated

Probab=99.19  E-value=9.4e-10  Score=102.14  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc------------CCcceEEEccCCCCCCCCCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER------------EVEGDLLLGDMGQGLGLRPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~------------~~~~~~~~~D~~~~~~~~~~~fD~V  117 (291)
                      +.+||+||||.|.....+.+..  ..+++||+++.|++.|++.            .+.+.++.+|....+....+.||+|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI  230 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI  230 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence            6699999999999988888874  7999999999999999962            1346788888765555556789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCCcEEEe
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      |+...     ++... .....--..|+..+++.|+|||+++++....  .......+...+.++||.......
T Consensus       231 IvDl~-----DP~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t  297 (374)
T PRK01581        231 IIDFP-----DPATE-LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT  297 (374)
T ss_pred             EEcCC-----Ccccc-chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence            98732     11100 0111112679999999999999999875321  122334577888999887533333

>PRK03612 spermidine synthase; Provisional

Probab=99.18  E-value=1.9e-10  Score=112.86  Aligned_cols=124  Identities=21%  Similarity=0.085  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC------------CcceEEEccCCCCCCCCCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------------VEGDLLLGDMGQGLGLRPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------------~~~~~~~~D~~~~~~~~~~~fD~V  117 (291)
                      +.+|||||||+|..+..++++.  .++++||+++.+++.|+++.            +.++++.+|....+...+++||+|
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI  377 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI  377 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence            6799999999999999988874  69999999999999999832            346788888755444445799999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCC
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGF  181 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF  181 (291)
                      ++.....+.+..      ...--..|++.+.+.|+|||.++++..+  ........+.+.+.+.||
T Consensus       378 i~D~~~~~~~~~------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        378 IVDLPDPSNPAL------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             EEeCCCCCCcch------hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            998543321110      0011246899999999999999997642  234556778889999999

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=2.2e-09  Score=89.50  Aligned_cols=131  Identities=21%  Similarity=0.312  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHh----cCCcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALE----REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~----~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..+||||||||..+..|+..   +..+.++||++.+++...+    +...++.++.|+...+.  .++.|+++.|..  
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPP--  119 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPP--  119 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCC--
Confidence            568999999999999998876   2678999999998887554    44557899999866544  599999998732  


Q ss_pred             hhcccc------------ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEe
Q 043626          125 WLCNAD------------KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       125 ~l~~~~------------~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      +++.++            ....+......+++..+-.+|.|.|.+++.+...|  ...+|...+...||...+...
T Consensus       120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--~p~ei~k~l~~~g~~~~~~~~  193 (209)
T KOG3191|consen  120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--KPKEILKILEKKGYGVRIAMQ  193 (209)
T ss_pred             cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--CHHHHHHHHhhcccceeEEEE
Confidence            333222            23356666678999999999999999999876655  345677889999998744433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.15  E-value=7.7e-10  Score=96.14  Aligned_cols=105  Identities=22%  Similarity=0.327  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcc---eE--------------------------E
Q 043626           51 VPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEG---DL--------------------------L   99 (291)
Q Consensus        51 ~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~---~~--------------------------~   99 (291)
                      .+..+|||||.+|.++..+++..  ..++|+||++..|..|+++....   ..                          +
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            36799999999999999999874  68999999999999999865320   00                          0


Q ss_pred             EccCC---------------CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          100 LGDMG---------------QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       100 ~~D~~---------------~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..|+.               +.+.+....||+|+|.++--|+--     ......+.+||..++++|.|||+||+.
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHL-----NwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHL-----NWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEec-----ccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence            00000               112234568999999888776521     122344899999999999999999994

>TIGR00417 speE spermidine synthase

Probab=99.13  E-value=1.2e-09  Score=98.69  Aligned_cols=124  Identities=19%  Similarity=0.087  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+||+||||+|.++..++...  ..++++|+++.+++.|++...         .++++.+|....+....++||+||+.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            5699999999999998888774  689999999999999988642         25666666543333335799999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ....+-+.       ...-...+++.+.+.|+|||.++++...  ........+...+... |..
T Consensus       153 ~~~~~~~~-------~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~  209 (270)
T TIGR00417       153 STDPVGPA-------ETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-FPI  209 (270)
T ss_pred             CCCCCCcc-------cchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCC
Confidence            54322110       1111358899999999999999987432  1234445555566666 654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.13  E-value=2.4e-10  Score=99.96  Aligned_cols=109  Identities=25%  Similarity=0.275  Sum_probs=81.7

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh-cCC----------------cceEEEc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE-REV----------------EGDLLLG  101 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~-~~~----------------~~~~~~~  101 (291)
                      ..++.+..+.   +.+||..|||.|.....|+++|++|+|+|+|+.+++.+.+ +..                .+.++++
T Consensus        28 ~~~~~l~~~~---~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g  104 (218)
T PF05724_consen   28 EYLDSLALKP---GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG  104 (218)
T ss_dssp             HHHHHHTTST---SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred             HHHHhcCCCC---CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence            3344455554   6799999999999999999999999999999999999843 221                1578899


Q ss_pred             cCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          102 DMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      |+...-+-..++||+|+=..++..|+.         ..-.+..+.+.++|+|||.+++
T Consensus       105 DfF~l~~~~~g~fD~iyDr~~l~Alpp---------~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  105 DFFELPPEDVGKFDLIYDRTFLCALPP---------EMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             -TTTGGGSCHHSEEEEEECSSTTTS-G---------GGHHHHHHHHHHCEEEEEEEEE
T ss_pred             ccccCChhhcCCceEEEEecccccCCH---------HHHHHHHHHHHHHhCCCCcEEE
Confidence            985532323368999999888887743         2256899999999999999433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.13  E-value=3.4e-10  Score=102.02  Aligned_cols=103  Identities=22%  Similarity=0.309  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc-----------ceEEEccCCC-----CCCCCCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE-----------GDLLLGDMGQ-----GLGLRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~-----------~~~~~~D~~~-----~~~~~~~~f  114 (291)
                      ...+||+|||-|.-...+...| ..++|+||++..++.|+.+..+           +.|+.+|-..     .+++.+.+|
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f  197 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF  197 (389)
T ss_pred             ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence            5689999999999888888887 8999999999999999987643           4778887543     245556669


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+|-|.+++|+-       ++.......++.++..+|+|||.++-++
T Consensus       198 DivScQF~~HYa-------Fetee~ar~~l~Nva~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  198 DIVSCQFAFHYA-------FETEESARIALRNVAKCLKPGGVFIGTI  237 (389)
T ss_pred             ceeeeeeeEeee-------eccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence            999999999985       3455668899999999999999999876

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.13  E-value=8.2e-10  Score=106.13  Aligned_cols=131  Identities=18%  Similarity=0.215  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ...+.+.+++.+.+.+   +.+|||+|||+|.++..|+..+..|+|+|+++.|++.|+++.     .++.++.+|+.+.+
T Consensus       277 ~~~l~~~~~~~l~~~~---~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       277 NEKLVDRALEALELQG---EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHHHhccCC---CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence            4456677777776654   579999999999999999998889999999999999999864     35789999985432


Q ss_pred             ---CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 ---GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ---~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                         ++..++||+|++...-        ...     ...++..+. .|+|++.++++.   ++..+..-...+.+.||..
T Consensus       354 ~~~~~~~~~~D~vi~dPPr--------~G~-----~~~~l~~l~-~l~~~~ivyvsc---~p~tlard~~~l~~~gy~~  415 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPR--------KGC-----AAEVLRTII-ELKPERIVYVSC---NPATLARDLEFLCKEGYGI  415 (431)
T ss_pred             HHHHhcCCCCCEEEECcCC--------CCC-----CHHHHHHHH-hcCCCEEEEEcC---CHHHHHHHHHHHHHCCeeE
Confidence               2335679999965221        000     134555544 478999888876   4555555566677888864

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.12  E-value=1.6e-09  Score=95.65  Aligned_cols=130  Identities=16%  Similarity=0.112  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      ..++||||+|.|..+..++....+|++.++|+.|....+++.-  .++..+  + ..-.+..||+|.|..+|....+   
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~--~vl~~~--~-w~~~~~~fDvIscLNvLDRc~~---  166 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGF--TVLDID--D-WQQTDFKFDVISCLNVLDRCDR---  166 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCC--eEEehh--h-hhccCCceEEEeehhhhhccCC---
Confidence            5689999999999999999999999999999999888877643  233222  2 2223468999999999987644   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEE----------cC--C-C------------hHHHHHHHHHHHHcCCCCcEE
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQI----------YP--E-S------------VAQRELILGAAMRAGFAGGVV  186 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~----------~~--~-~------------~~~~~~i~~~~~~aGF~~~~~  186 (291)
                              +..+++.+++.|+|+|++++.+          .+  . .            .+++..+.+.+..+||+-...
T Consensus       167 --------P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~  238 (265)
T PF05219_consen  167 --------PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW  238 (265)
T ss_pred             --------HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence                    5689999999999999999841          11  0 0            136667779999999987555


Q ss_pred             EeCCCCCCCCc
Q 043626          187 VDYPHSSKSRK  197 (291)
Q Consensus       187 ~~~p~~~~~~~  197 (291)
                      ..-|...++.-
T Consensus       239 tr~PYLcEGD~  249 (265)
T PF05219_consen  239 TRLPYLCEGDL  249 (265)
T ss_pred             eccCccccCcc
Confidence            55676665443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.09  E-value=3.2e-10  Score=97.84  Aligned_cols=138  Identities=19%  Similarity=0.087  Sum_probs=93.6

Q ss_pred             HHHHHHHHhCCCC---CCCCCeEEEEcCCCchhHHHH-HHcCCeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCC
Q 043626           36 LSERALELLALPD---DGVPRLLLDIGCGSGLSGETL-SENGHQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQG  106 (291)
Q Consensus        36 ~~~~~lelL~~~~---~~~~~~VLDiGcGsG~~~~~L-~~~g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~  106 (291)
                      -+...|..|....   .....+.||.|||-|..+..| .....+|..||..+..++.|++....     +++++..+ +.
T Consensus        37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL-Q~  115 (218)
T PF05891_consen   37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL-QD  115 (218)
T ss_dssp             HHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G-GG
T ss_pred             HHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH-hh
Confidence            3445555554331   112568999999999999866 45579999999999999999965543     57888887 43


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE---------Ec-CCCh---HHHHHHH
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ---------IY-PESV---AQRELIL  173 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~---------~~-~~~~---~~~~~i~  173 (291)
                      +...++.||+|.+.+++.||.|.         .+..||+.+...|+|+|.+++.         .+ .++.   ...+.+.
T Consensus       116 f~P~~~~YDlIW~QW~lghLTD~---------dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~  186 (218)
T PF05891_consen  116 FTPEEGKYDLIWIQWCLGHLTDE---------DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR  186 (218)
T ss_dssp             ----TT-EEEEEEES-GGGS-HH---------HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred             ccCCCCcEeEEEehHhhccCCHH---------HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence            33335799999999999999774         4899999999999999999993         11 1110   2456788


Q ss_pred             HHHHHcCCCC
Q 043626          174 GAAMRAGFAG  183 (291)
Q Consensus       174 ~~~~~aGF~~  183 (291)
                      +++.+||+.-
T Consensus       187 ~lF~~AGl~~  196 (218)
T PF05891_consen  187 ELFKQAGLRL  196 (218)
T ss_dssp             HHHHHCT-EE
T ss_pred             HHHHHcCCEE
Confidence            9999999974

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.08  E-value=9.6e-10  Score=94.60  Aligned_cols=119  Identities=25%  Similarity=0.360  Sum_probs=84.3

Q ss_pred             eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-----CCcceEEEccCCCCCC--CCCCcccEEEECCchh
Q 043626           54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-----EVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQ  124 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-----~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~  124 (291)
                      .+||||||.|.+...+|...  ..++|+|++...+..+..+     ..++.++++|+...+.  ++++++|.|..++.=.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP   99 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP   99 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence            89999999999999999874  8999999999988877654     3568999999855332  4579999999988877


Q ss_pred             hhccc--cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc
Q 043626          125 WLCNA--DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA  179 (291)
Q Consensus       125 ~l~~~--~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a  179 (291)
                      |....  .++..+     ..|+..++++|+|||.+.+.+  +.....+.+...+..+
T Consensus       100 WpK~rH~krRl~~-----~~fl~~~~~~L~~gG~l~~~T--D~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen  100 WPKKRHHKRRLVN-----PEFLELLARVLKPGGELYFAT--DVEEYAEWMLEQFEES  149 (195)
T ss_dssp             --SGGGGGGSTTS-----HHHHHHHHHHEEEEEEEEEEE--S-HHHHHHHHHHHHHH
T ss_pred             CcccchhhhhcCC-----chHHHHHHHHcCCCCEEEEEe--CCHHHHHHHHHHHHhc
Confidence            76431  111222     589999999999999999887  3444555666666664

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.08  E-value=6.1e-10  Score=102.76  Aligned_cols=116  Identities=18%  Similarity=0.114  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ...+.+.+.+++....   +.+|||+|||+|.++..++..+..|+|+|+|+.|++.|+++.     .+++++++|+.+..
T Consensus       158 ~~~l~~~v~~~l~~~~---~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~  234 (315)
T PRK03522        158 AAQLYATARDWVRELP---PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA  234 (315)
T ss_pred             HHHHHHHHHHHHHhcC---CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence            3455666666665333   569999999999999999999999999999999999998764     24789999985433


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      ....+.||+|+++..-              ..+..-+..+...+.|++.++++..|..
T Consensus       235 ~~~~~~~D~Vv~dPPr--------------~G~~~~~~~~l~~~~~~~ivyvsc~p~t  278 (315)
T PRK03522        235 TAQGEVPDLVLVNPPR--------------RGIGKELCDYLSQMAPRFILYSSCNAQT  278 (315)
T ss_pred             HhcCCCCeEEEECCCC--------------CCccHHHHHHHHHcCCCeEEEEECCccc
Confidence            2224579999977221              1111222233344688898998887754

>PLN02366 spermidine synthase

Probab=99.06  E-value=6.5e-09  Score=95.46  Aligned_cols=122  Identities=21%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCC-CCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLG-LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~-~~~~~fD~Vis  119 (291)
                      +.+||+||||.|.+...++++.  ..++.|||++.+++.|++.++         .+.++.+|....+. ...+.||+||+
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~  171 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV  171 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence            6799999999999999998873  689999999999999998653         36788888643332 22568999998


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGF  181 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF  181 (291)
                      ...-.+-+       ....--..|++.+.++|+|||.++.+...  ........+...+... |
T Consensus       172 D~~dp~~~-------~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~-F  227 (308)
T PLN02366        172 DSSDPVGP-------AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET-F  227 (308)
T ss_pred             cCCCCCCc-------hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH-C
Confidence            64432211       01111367999999999999999886432  1344556666666666 5

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.04  E-value=3.3e-09  Score=93.03  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=91.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG  116 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~  116 (291)
                      .+.+++.|...+.  ...|.|+|||.+-++.   ..-+.|+.+|+-+          .+-+++.+||. .+|+++++.|+
T Consensus       168 ld~ii~~ik~r~~--~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~~~~V~~cDm~-~vPl~d~svDv  231 (325)
T KOG3045|consen  168 LDVIIRKIKRRPK--NIVIADFGCGEAKIAS---SERHKVHSFDLVA----------VNERVIACDMR-NVPLEDESVDV  231 (325)
T ss_pred             HHHHHHHHHhCcC--ceEEEecccchhhhhh---ccccceeeeeeec----------CCCceeecccc-CCcCccCcccE
Confidence            3455666655443  6799999999987765   3448899999733          23578899995 49999999999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +|+..+|.- .|           +..|+.+++++|++||.+++.-..........+...+...||..
T Consensus       232 aV~CLSLMg-tn-----------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~  286 (325)
T KOG3045|consen  232 AVFCLSLMG-TN-----------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV  286 (325)
T ss_pred             EEeeHhhhc-cc-----------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence            987544432 22           78999999999999999999765555566777999999999986

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=5.3e-09  Score=91.95  Aligned_cols=123  Identities=23%  Similarity=0.236  Sum_probs=99.6

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLG  108 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~  108 (291)
                      ..++..+.+.+   +.+|||.|.|||.++..|+.. |  .+++.+|+-++.++.|.+|...      +.+..+|+.+...
T Consensus        84 ~~I~~~~gi~p---g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          84 GYIVARLGISP---GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID  160 (256)
T ss_pred             HHHHHHcCCCC---CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence            35666778877   889999999999999999964 3  7999999999999999998754      6677788865433


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                        ...||+|+.-..=                .-.++..++.+|+|||.+++-.  -..+|++.+...+...||..
T Consensus       161 --~~~vDav~LDmp~----------------PW~~le~~~~~Lkpgg~~~~y~--P~veQv~kt~~~l~~~g~~~  215 (256)
T COG2519         161 --EEDVDAVFLDLPD----------------PWNVLEHVSDALKPGGVVVVYS--PTVEQVEKTVEALRERGFVD  215 (256)
T ss_pred             --ccccCEEEEcCCC----------------hHHHHHHHHHHhCCCcEEEEEc--CCHHHHHHHHHHHHhcCccc
Confidence              3499999976333                2378999999999999887643  35689999999999999975

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.03  E-value=2e-09  Score=92.83  Aligned_cols=115  Identities=14%  Similarity=-0.013  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~  108 (291)
                      .+.+.+++.+.....  +.+|||+|||+|.++..++.++ .+++++|+++.+++.++++..     ++.++.+|+...++
T Consensus        39 ~v~e~l~~~l~~~~~--~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~  116 (199)
T PRK10909         39 RVRETLFNWLAPVIV--DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA  116 (199)
T ss_pred             HHHHHHHHHHhhhcC--CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh
Confidence            445556666543221  5699999999999998655454 799999999999999887642     46788888855443


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEcC
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIYP  163 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~~  163 (291)
                      ...++||+|+++..+..  .          ....++..+..  .|.|++.+++....
T Consensus       117 ~~~~~fDlV~~DPPy~~--g----------~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        117 QPGTPHNVVFVDPPFRK--G----------LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             hcCCCceEEEECCCCCC--C----------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            23457999998855321  1          02344555544  47999999998754

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.01  E-value=4.6e-09  Score=99.66  Aligned_cols=129  Identities=17%  Similarity=0.074  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCC-C--CCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLG-L--RPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~-~--~~~~fD~Vis~  120 (291)
                      +.+|||+|||+|.++..++..+ .++++||+|+.+++.|+++..       .++++++|+.+.+. +  ..++||+||++
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD  300 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence            5699999999999988776666 599999999999999988642       35788999855332 1  24689999987


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---hHHHHHHHHHHHHcCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---VAQRELILGAAMRAGFA  182 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---~~~~~~i~~~~~~aGF~  182 (291)
                      ...  +.............+..++..+.++|+|||.+++......   ..-.+.+...+.++|-.
T Consensus       301 PP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~  363 (396)
T PRK15128        301 PPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_pred             CCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence            432  1111101111122356777788999999999997543321   22344555556666543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=1.1e-08  Score=86.08  Aligned_cols=112  Identities=21%  Similarity=0.295  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhh-
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW-  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~-  125 (291)
                      +..|+|+|||||.++...+-.| +.|+|||+++.+++.++++..    ++.++++|+.. +   .+.||.||.|..+.- 
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~-~---~~~~dtvimNPPFG~~  121 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSD-F---RGKFDTVIMNPPFGSQ  121 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh-c---CCccceEEECCCCccc
Confidence            6689999999999999999999 899999999999999999876    57999999843 2   478899999866642 


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...+|          ..|+..+.+.-    ..+-+++  +....+.+...+..+|+..
T Consensus       122 ~rhaD----------r~Fl~~Ale~s----~vVYsiH--~a~~~~f~~~~~~~~G~~v  163 (198)
T COG2263         122 RRHAD----------RPFLLKALEIS----DVVYSIH--KAGSRDFVEKFAADLGGTV  163 (198)
T ss_pred             cccCC----------HHHHHHHHHhh----heEEEee--ccccHHHHHHHHHhcCCeE
Confidence            22222          24554444442    3444443  3336677888888999875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.00  E-value=6.5e-09  Score=94.01  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CcceEEEccCCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE--VEGDLLLGDMGQGLGLRPG  112 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~--~~~~~~~~D~~~~~~~~~~  112 (291)
                      .+.+.+++.+.+.+   +..|||||||+|.++..|++.+.+++|+|+++.|++.++++.  ..+.++++|+.+ +++..-
T Consensus        29 ~i~~~i~~~l~~~~---~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~-~~~~~~  104 (272)
T PRK00274         29 NILDKIVDAAGPQP---GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALK-VDLSEL  104 (272)
T ss_pred             HHHHHHHHhcCCCC---cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhc-CCHHHc
Confidence            56677888877765   679999999999999999999889999999999999998876  457899999844 454322


Q ss_pred             cccEEEECCc
Q 043626          113 VVDGAISISA  122 (291)
Q Consensus       113 ~fD~Vis~~~  122 (291)
                      .+|.||+|-.
T Consensus       105 ~~~~vv~NlP  114 (272)
T PRK00274        105 QPLKVVANLP  114 (272)
T ss_pred             CcceEEEeCC
Confidence            2588998843

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.98  E-value=6.8e-09  Score=88.97  Aligned_cols=121  Identities=18%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG  116 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~  116 (291)
                      .+.+++.|.-.+.  ...|.|+|||.+.++..+. .++.|...|+-..          +-.++.+|| ..+|+++++.|+
T Consensus        60 vd~iI~~l~~~~~--~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------n~~Vtacdi-a~vPL~~~svDv  125 (219)
T PF05148_consen   60 VDVIIEWLKKRPK--SLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------NPRVTACDI-ANVPLEDESVDV  125 (219)
T ss_dssp             HHHHHHHHCTS-T--TS-EEEES-TT-HHHHH---S---EEEEESS-S----------STTEEES-T-TS-S--TT-EEE
T ss_pred             HHHHHHHHHhcCC--CEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------CCCEEEecC-ccCcCCCCceeE
Confidence            4566667664442  6799999999999997653 4588999998442          235888999 679999999999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ||+.-+|.-. |           +..++.+++++||+||.+.+.-....-...+.+...+.+.||..
T Consensus       126 ~VfcLSLMGT-n-----------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~  180 (219)
T PF05148_consen  126 AVFCLSLMGT-N-----------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKL  180 (219)
T ss_dssp             EEEES---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEE
T ss_pred             EEEEhhhhCC-C-----------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeE
Confidence            9987665432 2           77999999999999999998654444457788889999999985

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.97  E-value=8.9e-09  Score=94.57  Aligned_cols=146  Identities=22%  Similarity=0.152  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-----ceEEEc-cCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE-----GDLLLG-DMGQGL  107 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~-D~~~~~  107 (291)
                      ..++..++++-...+   +..|||--||||.+.....-.|..++|+|++..|+.-|+.|...     ..++.. |+ ..+
T Consensus       183 P~lAR~mVNLa~v~~---G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da-~~l  258 (347)
T COG1041         183 PRLARAMVNLARVKR---GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA-TNL  258 (347)
T ss_pred             HHHHHHHHHHhcccc---CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc-ccC
Confidence            366777777776666   78999999999999999998999999999999999999988754     224444 87 568


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-cEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-GVV  186 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-~~~  186 (291)
                      |++..+||.|++-....-  .+......-..-+..+|+++.++|++||+++|...       ......+...||.- +.+
T Consensus       259 pl~~~~vdaIatDPPYGr--st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~~~~~f~v~~~~  329 (347)
T COG1041         259 PLRDNSVDAIATDPPYGR--STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHELEELGFKVLGRF  329 (347)
T ss_pred             CCCCCccceEEecCCCCc--ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhHhhcCceEEEEE
Confidence            898889999998643321  11111111233368999999999999999999873       12234567788875 455


Q ss_pred             EeCCCC
Q 043626          187 VDYPHS  192 (291)
Q Consensus       187 ~~~p~~  192 (291)
                      ..|.+.
T Consensus       330 ~~~~H~  335 (347)
T COG1041         330 TMRVHG  335 (347)
T ss_pred             EEeecC
Confidence            555443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.97  E-value=1.4e-09  Score=96.23  Aligned_cols=95  Identities=19%  Similarity=0.159  Sum_probs=74.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC-----CCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL-----RPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~-----~~~~fD~V  117 (291)
                      +.+|||||||+|.++..|+..   ..+++++|+++.+++.|+++..      .++++.+|+.+.++.     ..++||+|
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V  148 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA  148 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence            679999999999998888764   3799999999999999988753      367888888654331     14689999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +....-              ..+..++..+.++|+|||.+++.
T Consensus       149 fiDa~k--------------~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        149 FVDADK--------------PNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             EECCCH--------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            864221              12567889999999999999974

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=1.3e-08  Score=90.18  Aligned_cols=105  Identities=17%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCccc
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      ..+++...+..   ..+|||||+|+|.++..+++..  .+++.+|. |.+++.+.+ ...+.++.+|+.+.+|  .  +|
T Consensus        90 ~~~~~~~d~~~---~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f~~~P--~--~D  160 (241)
T PF00891_consen   90 DILLEAFDFSG---FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFFDPLP--V--AD  160 (241)
T ss_dssp             HHHHHHSTTTT---SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TTTCCS--S--ES
T ss_pred             hhhhccccccC---ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHHhhhc--c--cc
Confidence            44555556654   5689999999999999999874  78999999 888998888 6678999999964333  3  99


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC--cEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG--ARAVFQ  160 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg--G~lv~~  160 (291)
                      +++...+||.+.+         .....+|+++++.|+||  |++++.
T Consensus       161 ~~~l~~vLh~~~d---------~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  161 VYLLRHVLHDWSD---------EDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             EEEEESSGGGS-H---------HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             ceeeehhhhhcch---------HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            9999999998754         44789999999999999  999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.96  E-value=1.6e-08  Score=95.43  Aligned_cols=129  Identities=14%  Similarity=0.050  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ...+...+.+.+....   +.+|||+|||+|.++..++..+..++|+|+++.+++.|+++.     .++.++.+|+...+
T Consensus       218 ~~~l~~~~~~~l~~~~---~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~  294 (374)
T TIGR02085       218 AAQLYATARQWVREIP---VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA  294 (374)
T ss_pred             HHHHHHHHHHHHHhcC---CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence            3345555555554333   469999999999999999988899999999999999998765     24688999985433


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.....||+||++..-..+             ...++..+. .++|++.++++..|..  ....+.. +  .||.-
T Consensus       295 ~~~~~~~D~vi~DPPr~G~-------------~~~~l~~l~-~~~p~~ivyvsc~p~T--laRDl~~-L--~gy~l  351 (374)
T TIGR02085       295 TAQMSAPELVLVNPPRRGI-------------GKELCDYLS-QMAPKFILYSSCNAQT--MAKDIAE-L--SGYQI  351 (374)
T ss_pred             HhcCCCCCEEEECCCCCCC-------------cHHHHHHHH-hcCCCeEEEEEeCHHH--HHHHHHH-h--cCceE
Confidence            2122469999977332111             234455554 4799999999985432  2333333 3  68875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.94  E-value=3.3e-08  Score=86.94  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=68.9

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcce-EEEccCCC----CCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGD-LLLGDMGQ----GLGLR  110 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~-~~~~D~~~----~~~~~  110 (291)
                      ...+++.+.+...  +..|||+|||+|.++..+++.| ..|+|||+++.|+.........+. +...|+..    .++..
T Consensus        63 L~~~l~~~~~~~~--~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d  140 (228)
T TIGR00478        63 LKEALEEFNIDVK--NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD  140 (228)
T ss_pred             HHHHHHhcCCCCC--CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence            3455555554332  6799999999999999999997 789999999998887444444332 33334431    11112


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      -..+|+++++                   +...|..+..+|++ |.+++-+
T Consensus       141 ~~~~DvsfiS-------------------~~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       141 FATFDVSFIS-------------------LISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             ceeeeEEEee-------------------hHhHHHHHHHHhCc-CeEEEEc
Confidence            2367766644                   22357789999999 8877644

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.91  E-value=8.8e-09  Score=92.42  Aligned_cols=85  Identities=18%  Similarity=0.311  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~  110 (291)
                      ..+.+.+++.+.+.+   +..|||||||+|.++..|++.+..++|+|+++.|++.++++..   ++.++++|+.+ +++ 
T Consensus        15 ~~~~~~iv~~~~~~~---~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~-~~~-   89 (258)
T PRK14896         15 DRVVDRIVEYAEDTD---GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALK-VDL-   89 (258)
T ss_pred             HHHHHHHHHhcCCCC---cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecccc-CCc-
Confidence            356778888877665   6799999999999999999999899999999999999988753   47899999843 454 


Q ss_pred             CCcccEEEECCchh
Q 043626          111 PGVVDGAISISAVQ  124 (291)
Q Consensus       111 ~~~fD~Vis~~~l~  124 (291)
                       ..||.|++|..++
T Consensus        90 -~~~d~Vv~NlPy~  102 (258)
T PRK14896         90 -PEFNKVVSNLPYQ  102 (258)
T ss_pred             -hhceEEEEcCCcc
Confidence             3589999986553

>PRK04148 hypothetical protein; Provisional

Probab=98.89  E-value=2.6e-08  Score=80.15  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      +.+.+.+.+....   +.+|||||||+|. .+..|++.|+.|+++|+++..++.++++.  .+++..|+.+.-.---..+
T Consensus         4 i~~~l~~~~~~~~---~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--~~~v~dDlf~p~~~~y~~a   78 (134)
T PRK04148          4 IAEFIAENYEKGK---NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--LNAFVDDLFNPNLEIYKNA   78 (134)
T ss_pred             HHHHHHHhccccc---CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CeEEECcCCCCCHHHHhcC
Confidence            3344455443333   5789999999996 88899999999999999999999988774  5788999865332224679


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      |+|.++...              ..+...+-.+++.+  |.-+++...
T Consensus        79 ~liysirpp--------------~el~~~~~~la~~~--~~~~~i~~l  110 (134)
T PRK04148         79 KLIYSIRPP--------------RDLQPFILELAKKI--NVPLIIKPL  110 (134)
T ss_pred             CEEEEeCCC--------------HHHHHHHHHHHHHc--CCCEEEEcC
Confidence            999987433              33555555666543  555666543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=1.3e-08  Score=87.51  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchh----HHHHHHc-----C--CeEEEEeCCHHHHHHHHhcC---------C-----------------
Q 043626           52 PRLLLDIGCGSGLS----GETLSEN-----G--HQWIGLDISQSMLNIALERE---------V-----------------   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~----~~~L~~~-----g--~~v~gvDis~~ml~~a~~~~---------~-----------------   94 (291)
                      +.+|+-.||+||--    +..|.+.     +  ..++|.|||+.+|+.|++-.         +                 
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            67999999999953    3333341     2  58999999999999997621         0                 


Q ss_pred             -------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           95 -------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        95 -------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                             .+.|...|+.+ .+...+.||+|+|-.++-++..         .....++..++++|+|||.|++..
T Consensus       112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~---------~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP---------ETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             E-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H---------HHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             EChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH---------HHHHHHHHHHHHHcCCCCEEEEec
Confidence                   05788888866 3344689999999999998843         225789999999999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.87  E-value=3e-08  Score=88.68  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+.+++.+...+   +..|||||||+|.++..|++.+..++++|+++.|++.++.+.   .++.++.+|+.. +++. 
T Consensus        16 ~i~~~i~~~~~~~~---~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~-~~~~-   90 (253)
T TIGR00755        16 SVIQKIVEAANVLE---GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALK-VDLP-   90 (253)
T ss_pred             HHHHHHHHhcCCCC---cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhc-CChh-
Confidence            56777888877665   679999999999999999999988999999999999998775   357889999843 4442 


Q ss_pred             Cccc---EEEECCchh
Q 043626          112 GVVD---GAISISAVQ  124 (291)
Q Consensus       112 ~~fD---~Vis~~~l~  124 (291)
                       .||   +|+++..++
T Consensus        91 -~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        91 -DFPKQLKVVSNLPYN  105 (253)
T ss_pred             -HcCCcceEEEcCChh
Confidence             566   888875543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.86  E-value=1.1e-08  Score=89.71  Aligned_cols=107  Identities=23%  Similarity=0.326  Sum_probs=83.1

Q ss_pred             CeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc----CC-cceEEEccCCCCCC--CCCCcccEEEECCch
Q 043626           53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER----EV-EGDLLLGDMGQGLG--LRPGVVDGAISISAV  123 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~----~~-~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l  123 (291)
                      ..+||||||.|.+...+|...  ..++|||+....+..|...    .. ++.+++.|+.+.+.  +++++.|.|..++.-
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            489999999999999999986  7899999999877766553    34 67889999855443  345599999999888


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .|...   +++.-+-....|++.+.+.|+|||.+.+.+-
T Consensus       130 PWpKk---RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         130 PWPKK---RHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             CCCCc---cccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            88532   2222222236899999999999999999883

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.86  E-value=3.1e-08  Score=88.01  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV------EGDLLLGDMG  104 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~  104 (291)
                      ..=+..++-.|.+.+   +++|||.|.|||.++..|+.. +  .+|+.+|+.+..++.|++++.      .+.+.+.|+.
T Consensus        26 pkD~~~I~~~l~i~p---G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   26 PKDISYILMRLDIRP---GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             HHHHHHHHHHTT--T---T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             CchHHHHHHHcCCCC---CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            333456777888887   899999999999999999975 3  799999999999999998763      3688899985


Q ss_pred             C-CCCC-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhc-cCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          105 Q-GLGL-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCL-ARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       105 ~-~~~~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~L-kpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      . +++. ....+|.|+.-..-.|                ..+..+.++| ++||++++-. | .-+|+......+.+.||
T Consensus       103 ~~g~~~~~~~~~DavfLDlp~Pw----------------~~i~~~~~~L~~~gG~i~~fs-P-~ieQv~~~~~~L~~~gf  164 (247)
T PF08704_consen  103 EEGFDEELESDFDAVFLDLPDPW----------------EAIPHAKRALKKPGGRICCFS-P-CIEQVQKTVEALREHGF  164 (247)
T ss_dssp             CG--STT-TTSEEEEEEESSSGG----------------GGHHHHHHHE-EEEEEEEEEE-S-SHHHHHHHHHHHHHTTE
T ss_pred             cccccccccCcccEEEEeCCCHH----------------HHHHHHHHHHhcCCceEEEEC-C-CHHHHHHHHHHHHHCCC
Confidence            3 3321 1368999997654444                4677899999 8999877643 3 56899999999999999


Q ss_pred             CC
Q 043626          182 AG  183 (291)
Q Consensus       182 ~~  183 (291)
                      ..
T Consensus       165 ~~  166 (247)
T PF08704_consen  165 TD  166 (247)
T ss_dssp             EE
T ss_pred             ee
Confidence            76

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.85  E-value=5.4e-08  Score=83.58  Aligned_cols=129  Identities=18%  Similarity=0.195  Sum_probs=93.0

Q ss_pred             eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-----CCcc-eEEEccCCCC-CC------CCCCcccEEE
Q 043626           54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-----EVEG-DLLLGDMGQG-LG------LRPGVVDGAI  118 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-----~~~~-~~~~~D~~~~-~~------~~~~~fD~Vi  118 (291)
                      +|||||||||--+..++.+.  ..|.-.|+++..+......     ..++ .-+..|+... .+      +..++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            59999999999999999874  7899999999875333221     1121 3345565443 22      2357999999


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE--------EcCC----------------ChHHHHHHHH
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ--------IYPE----------------SVAQRELILG  174 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~--------~~~~----------------~~~~~~~i~~  174 (291)
                      |+.++|-.         |-.....+|..+.++|++||.|++.        +-++                ....++.+..
T Consensus       108 ~~N~lHI~---------p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~  178 (204)
T PF06080_consen  108 CINMLHIS---------PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA  178 (204)
T ss_pred             ehhHHHhc---------CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH
Confidence            99999865         4455789999999999999999983        1111                1125778999


Q ss_pred             HHHHcCCCCcEEEeCCC
Q 043626          175 AAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       175 ~~~~aGF~~~~~~~~p~  191 (291)
                      ++.++|+.-...++-|-
T Consensus       179 lA~~~GL~l~~~~~MPA  195 (204)
T PF06080_consen  179 LAAAHGLELEEDIDMPA  195 (204)
T ss_pred             HHHHCCCccCcccccCC
Confidence            99999998755555553

The function of this family is unknown.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.81  E-value=7.2e-09  Score=98.80  Aligned_cols=135  Identities=22%  Similarity=0.269  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcCCeEEEE---eCCHHHHHHHHhcCCcceEEEccC-CCCCCC
Q 043626           35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENGHQWIGL---DISQSMLNIALEREVEGDLLLGDM-GQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gv---Dis~~ml~~a~~~~~~~~~~~~D~-~~~~~~  109 (291)
                      ...+.+.+.+.+. .++.-..+||||||+|.++..|.+++.....+   |..+..++.|.++....  +.+-+ .+.+||
T Consensus       100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa--~~~~~~s~rLPf  177 (506)
T PF03141_consen  100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA--MIGVLGSQRLPF  177 (506)
T ss_pred             HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch--hhhhhccccccC
Confidence            4555566666551 11113479999999999999999998544333   66677888888886432  22222 357899


Q ss_pred             CCCcccEEEECCchh-hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------hHHHHHHHHHHHHcCC
Q 043626          110 RPGVVDGAISISAVQ-WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------VAQRELILGAAMRAGF  181 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~-~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------~~~~~~i~~~~~~aGF  181 (291)
                      +.++||+|.|..++- |..+.           --+|-++.++|+|||+++++--|-+       ......+..++...-+
T Consensus       178 p~~~fDmvHcsrc~i~W~~~~-----------g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW  246 (506)
T PF03141_consen  178 PSNAFDMVHCSRCLIPWHPND-----------GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCW  246 (506)
T ss_pred             Cccchhhhhcccccccchhcc-----------cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999988764 55441           2478899999999999999865533       1233345555555444


Q ss_pred             C
Q 043626          182 A  182 (291)
Q Consensus       182 ~  182 (291)
                      +
T Consensus       247 ~  247 (506)
T PF03141_consen  247 K  247 (506)
T ss_pred             H
Confidence            4

; GO: 0008168 methyltransferase activity

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.81  E-value=2.1e-08  Score=91.58  Aligned_cols=86  Identities=20%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL  107 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~  107 (291)
                      ..+.+.+++.+.+.+   +..|||||||+|.++..|++.+..++++|+++.|++.++++.      ..+.++.+|+.. .
T Consensus        22 ~~i~~~Iv~~~~~~~---~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~-~   97 (294)
T PTZ00338         22 PLVLDKIVEKAAIKP---TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK-T   97 (294)
T ss_pred             HHHHHHHHHhcCCCC---cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh-h
Confidence            356778888877765   679999999999999999999989999999999999998764      247889999843 3


Q ss_pred             CCCCCcccEEEECCchhh
Q 043626          108 GLRPGVVDGAISISAVQW  125 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~  125 (291)
                      +  ...||.||++..++.
T Consensus        98 ~--~~~~d~VvaNlPY~I  113 (294)
T PTZ00338         98 E--FPYFDVCVANVPYQI  113 (294)
T ss_pred             c--ccccCEEEecCCccc
Confidence            3  347899998855543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.79  E-value=2.6e-08  Score=84.42  Aligned_cols=132  Identities=17%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---------CCCCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---------LGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---------~~~~~~~fD~Vis  119 (291)
                      +..|||+||++|.++..+.+++   ..|+|+|+.+.      .....+..+.+|+...         ++-..+.||+|+|
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~   97 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS   97 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence            5899999999999999999997   89999999875      1112233334443211         1111268999999


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSS  193 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~  193 (291)
                      -.+.....+.+........-....+..+...|+|||.+++.++......  .+...+.. .|+. +.+..|.+.
T Consensus        98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~--~~~~~l~~-~F~~-v~~~Kp~~s  167 (181)
T PF01728_consen   98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE--ELIYLLKR-CFSK-VKIVKPPSS  167 (181)
T ss_dssp             -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH--HHHHHHHH-HHHH-EEEEE-TTS
T ss_pred             ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH--HHHHHHHh-CCeE-EEEEECcCC
Confidence            8755443332222222223245556666788999999999887644332  34443333 4665 344444443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.79  E-value=2.7e-08  Score=86.24  Aligned_cols=124  Identities=22%  Similarity=0.277  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcC-------CcceEEEccCCCCC-CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALERE-------VEGDLLLGDMGQGL-GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~-------~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~  122 (291)
                      +.+|||.+.|-|..+...+++|. +|+-++.++..|+.|.-|-       ..++++++|+.+.+ .|.+.+||+||-.  
T Consensus       135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD--  212 (287)
T COG2521         135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD--  212 (287)
T ss_pred             CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC--
Confidence            78999999999999999999996 9999999999999997653       13688999986544 5789999999943  


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-----ChHHHHHHHHHHHHcCCCC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-----SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-----~~~~~~~i~~~~~~aGF~~  183 (291)
                            +.+.+.....--..|..+++++|+|||+++-.+...     ..+-...+...+.++||..
T Consensus       213 ------PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~  272 (287)
T COG2521         213 ------PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV  272 (287)
T ss_pred             ------CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence                  222222222223689999999999999999765422     1234567888899999973

>PLN02823 spermine synthase

Probab=98.78  E-value=2.4e-07  Score=86.10  Aligned_cols=124  Identities=19%  Similarity=0.222  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+||.||+|.|.....+.+..  .++++|||++.+++.|++.+.         .+.++.+|....+....++||+|++.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD  183 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence            6799999999999998888763  689999999999999998653         36788888766555556789999976


Q ss_pred             CchhhhccccccCCchHHH--HHHHHH-HHHHhccCCcEEEEEEcCC----ChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLR--LKAFFG-SLYRCLARGARAVFQIYPE----SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~--l~~~l~-~l~~~LkpgG~lv~~~~~~----~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..     ++..  ..|...  -..|++ .+.+.|+|||.++++..+.    +......+...+.+. |..
T Consensus       184 ~~-----dp~~--~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~~  245 (336)
T PLN02823        184 LA-----DPVE--GGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FKY  245 (336)
T ss_pred             CC-----Cccc--cCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CCC
Confidence            32     1100  011111  246887 8999999999999886432    233455566666655 654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.77  E-value=1.2e-07  Score=87.44  Aligned_cols=150  Identities=16%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc-------ceEEE-ccCCC---CCCCCCCcccEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVE-------GDLLL-GDMGQ---GLGLRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~-------~~~~~-~D~~~---~~~~~~~~fD~Vi  118 (291)
                      ..+|||||||+|.+...|+..  +..++|+||++.+++.|+++...       +.+.. .|...   .+....+.||+|+
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv  194 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL  194 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence            579999999999888777765  58999999999999999876432       34433 23211   1112356899999


Q ss_pred             ECCchhhhccccccCCc-hHHHH---------HHHHHHHHHhccCCcEEEEE-------------------EcCCChHHH
Q 043626          119 SISAVQWLCNADKASHE-PRLRL---------KAFFGSLYRCLARGARAVFQ-------------------IYPESVAQR  169 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~-p~~~l---------~~~l~~l~~~LkpgG~lv~~-------------------~~~~~~~~~  169 (291)
                      ||..++--......... ....+         ..|=.....++.+||.+.|.                   +.+ ....+
T Consensus       195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~-kk~~l  273 (321)
T PRK11727        195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVS-KKENL  273 (321)
T ss_pred             eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEee-ccCCH
Confidence            99665422111000000 00000         00001234556677776652                   111 12367


Q ss_pred             HHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEee
Q 043626          170 ELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTC  204 (291)
Q Consensus       170 ~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~  204 (291)
                      ..+...+.+.|.....++.+...  .+..|++-+.
T Consensus       274 ~~l~~~L~~~~~~~~~~~e~~qG--~~~~~~vaWs  306 (321)
T PRK11727        274 PPLYRALKKVGAVEVKTIEMAQG--QKQSRFIAWT  306 (321)
T ss_pred             HHHHHHHHHcCCceEEEEEEeCC--CeeeEEEEee
Confidence            77888888888876555555444  3444555543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.76  E-value=1.5e-07  Score=83.91  Aligned_cols=125  Identities=20%  Similarity=0.158  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCc----------------------------------c
Q 043626           52 PRLLLDIGCGSGLSGETLS-ENGHQWIGLDISQSMLNIALEREVE----------------------------------G   96 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~----------------------------------~   96 (291)
                      +.++||||||+-..-..-+ +...+++..|.++..++..++....                                  -
T Consensus        57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk  136 (256)
T PF01234_consen   57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVK  136 (256)
T ss_dssp             EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEE
T ss_pred             CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhc
Confidence            5699999999965532222 3457899999999888755442211                                  2


Q ss_pred             eEEEccCCCCCCCCC-----CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE----------
Q 043626           97 DLLLGDMGQGLGLRP-----GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI----------  161 (291)
Q Consensus        97 ~~~~~D~~~~~~~~~-----~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~----------  161 (291)
                      .++.+|+.+.-|+.+     ..||+|++.+++...|.       ........++++.++|||||.|++..          
T Consensus       137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~-------d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG  209 (256)
T PF01234_consen  137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACK-------DLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG  209 (256)
T ss_dssp             EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-S-------SHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred             eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcC-------CHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence            578899977656544     35999999999999875       23448899999999999999999842          


Q ss_pred             ---cCCChHHHHHHHHHHHHcCCCC
Q 043626          162 ---YPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       162 ---~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                         ++.-.-..+.+.+.+..+||..
T Consensus       210 ~~~F~~l~l~ee~v~~al~~aG~~i  234 (256)
T PF01234_consen  210 GHKFPCLPLNEEFVREALEEAGFDI  234 (256)
T ss_dssp             TEEEE---B-HHHHHHHHHHTTEEE
T ss_pred             CEecccccCCHHHHHHHHHHcCCEE
Confidence               1222336778999999999975

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.74  E-value=5.7e-08  Score=82.02  Aligned_cols=101  Identities=17%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC--------CcceEEEccCCCCC--C-CCCCcccEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE--------VEGDLLLGDMGQGL--G-LRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~--------~~~~~~~~D~~~~~--~-~~~~~fD~Vi  118 (291)
                      +.+|||||||+|..+..++..  ...|+..|.++ .++.++.+.        ..+.+...|.++..  . +...+||+|+
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il  124 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL  124 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence            679999999999999999999  48999999999 777776653        22466666665432  1 2356899999


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      +.-+++.-..           ...++..+.++|+++|.+++.....
T Consensus       125 asDv~Y~~~~-----------~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  125 ASDVLYDEEL-----------FEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EES--S-GGG-----------HHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EecccchHHH-----------HHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            9998875322           6789999999999999977765433

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02476 O-methyltransferase

Probab=98.73  E-value=4.6e-08  Score=88.29  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC-----CCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL-----RPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~-----~~~~fD~V  117 (291)
                      +.+||||||++|.++..++..   +..++++|+++.+++.|++++.      .++++.+|+.+.++-     ..++||+|
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V  198 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA  198 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence            679999999999999999874   4679999999999999988763      368888887554431     14689999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.-.              +......+|..+.++|+|||.+++.
T Consensus       199 FIDa--------------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        199 FVDA--------------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             EECC--------------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9531              1233678899999999999999985

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.73  E-value=1.4e-07  Score=91.29  Aligned_cols=143  Identities=14%  Similarity=0.079  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHh--CCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEc
Q 043626           32 IQAKLSERALELL--ALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLG  101 (291)
Q Consensus        32 iq~~~~~~~lelL--~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~  101 (291)
                      +|...+..++..|  ...+   +.+|||+|||+|.-+..|++.-   ..++++|+++..+..++++..     ++.+...
T Consensus        95 vQd~sS~l~~~~L~~~~~p---g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~  171 (470)
T PRK11933         95 IQEASSMLPVAALFADDNA---PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHF  171 (470)
T ss_pred             EECHHHHHHHHHhccCCCC---CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            3555555555666  4444   7799999999999999998762   689999999999988887653     3566677


Q ss_pred             cCCCCCCCCCCcccEEEECCc----hhhhccccccCC-chH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626          102 DMGQGLGLRPGVVDGAISISA----VQWLCNADKASH-EPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRE  170 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~----l~~l~~~~~~~~-~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~  170 (291)
                      |........++.||.|+....    =.+-.+++.... .+.      ..-..+|..++++|+|||++|.++..-++++-+
T Consensus       172 D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE  251 (470)
T PRK11933        172 DGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ  251 (470)
T ss_pred             chhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence            764322233568999994321    111111111110 111      112788999999999999999988876666555


Q ss_pred             HHHHHHH
Q 043626          171 LILGAAM  177 (291)
Q Consensus       171 ~i~~~~~  177 (291)
                      .+...+.
T Consensus       252 ~vV~~~L  258 (470)
T PRK11933        252 AVCLWLK  258 (470)
T ss_pred             HHHHHHH
Confidence            5555544

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.73  E-value=5.6e-08  Score=84.25  Aligned_cols=95  Identities=21%  Similarity=0.211  Sum_probs=74.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-----CCCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-----LRPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-----~~~~~fD~V  117 (291)
                      +.+||||||++|.++..|++.   +.+++.+|+++.+.+.|++.+.      .++++.+|..+.++     -..++||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            569999999999999999975   5899999999999999988653      37889888754332     114689999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +....-.              ....+|..+.++|+|||.+++.
T Consensus       126 FiDa~K~--------------~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  126 FIDADKR--------------NYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEESTGG--------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEccccc--------------chhhHHHHHhhhccCCeEEEEc
Confidence            9643221              1567888899999999999995

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.72  E-value=6.3e-08  Score=88.69  Aligned_cols=97  Identities=20%  Similarity=0.260  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----Cc--ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VE--GDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||+|||+|.++...++.| ..|++||.|.-+ +.|.+..    .+  ++++.+.+. .+.++.+..|+|||-+.=+
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvE-di~LP~eKVDiIvSEWMGy  138 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVE-DIELPVEKVDIIVSEWMGY  138 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceE-EEecCccceeEEeehhhhH
Confidence            5799999999999999999999 799999987654 6665532    22  577888773 3444478999999988777


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                      +|....        -+..++-.=-+.|+|||.++
T Consensus       139 ~Ll~Es--------MldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  139 FLLYES--------MLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHHhh--------hhhhhhhhhhhccCCCceEc
Confidence            764211        03444444557899999765

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.72  E-value=2.2e-07  Score=76.67  Aligned_cols=117  Identities=19%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L-  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~-  107 (291)
                      -++++++..++...   +..|||+|.|+|.++..+..+|   ..++++++|++......+..+...++.+|....   + 
T Consensus        35 ~lA~~M~s~I~pes---glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~  111 (194)
T COG3963          35 ILARKMASVIDPES---GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG  111 (194)
T ss_pred             HHHHHHHhccCccc---CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence            34555555555444   6799999999999999999998   689999999999999999999988888887431   1 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .+....||.|||.-.+--+         |...-.++++.+...|..||.++--.|+
T Consensus       112 e~~gq~~D~viS~lPll~~---------P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         112 EHKGQFFDSVISGLPLLNF---------PMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             hcCCCeeeeEEeccccccC---------cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            2456789999987444322         4444568999999999999998865544

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.71  E-value=4.9e-08  Score=85.01  Aligned_cols=95  Identities=24%  Similarity=0.263  Sum_probs=75.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCc------ceEEE-ccCCCCCC-CCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVE------GDLLL-GDMGQGLG-LRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~------~~~~~-~D~~~~~~-~~~~~fD~Vis~  120 (291)
                      +.+|||||++.|.++..|+..   ..+++.||+++++.+.|++++..      +.++. +|..+.+. +..++||+|+.-
T Consensus        60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID  139 (219)
T COG4122          60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID  139 (219)
T ss_pred             CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence            679999999999999999965   36899999999999999998753      45666 46544333 457999999953


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..        +      .....+|..+.++|+|||.+++.
T Consensus       140 ad--------K------~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         140 AD--------K------ADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             CC--------h------hhCHHHHHHHHHHhCCCcEEEEe
Confidence            21        1      12568999999999999999985

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.69  E-value=1.4e-07  Score=85.59  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCchh----HHHHHHc------CCeEEEEeCCHHHHHHHHhcCC---------------------------
Q 043626           52 PRLLLDIGCGSGLS----GETLSEN------GHQWIGLDISQSMLNIALEREV---------------------------   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~----~~~L~~~------g~~v~gvDis~~ml~~a~~~~~---------------------------   94 (291)
                      +.+|+-.||+||--    +..|.+.      ...|+|+|||+.+|+.|++-.-                           
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            57999999999953    3333342      2579999999999999976310                           


Q ss_pred             ---------cceEEEccCCCCCCC-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           95 ---------EGDLLLGDMGQGLGL-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        95 ---------~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                               .+.|...|+.+. ++ ..+.||+|+|..++.|+..         .....++..+++.|+|||.|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~-~~~~~~~fD~I~cRNvliyF~~---------~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAK-QWAVPGPFDAIFCRNVMIYFDK---------TTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCC-CCccCCCcceeeHhhHHhcCCH---------HHHHHHHHHHHHHhCCCcEEEEeC
Confidence                     046677777542 22 2578999999999988843         236789999999999999988754

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.69  E-value=1.6e-07  Score=86.58  Aligned_cols=144  Identities=19%  Similarity=0.250  Sum_probs=96.4

Q ss_pred             CCCCCCCCcccCCchhhccccccchhH---------HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--
Q 043626            4 RPELIAPPEIFYDDTEARKYTSSSRII---------DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--   72 (291)
Q Consensus         4 ~pe~~~ppe~fy~~~~a~~Y~~~~~~~---------~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--   72 (291)
                      .+....||..||++.-+.-|+.-+...         .+.......++..+  +.   +..|+|+|||+|.-+..|.+.  
T Consensus        25 ~~~k~lp~k~~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~---~~~lIELGsG~~~Kt~~LL~aL~   99 (319)
T TIGR03439        25 GQPRTLPTLLLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASI--PS---GSMLVELGSGNLRKVGILLEALE   99 (319)
T ss_pred             CCCCCCChHhhhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CC---CCEEEEECCCchHHHHHHHHHHH
Confidence            455678999999988777666543322         22333333444443  23   568999999999987766643  


Q ss_pred             ----CCeEEEEeCCHHHHHHHHhcCC-c----c--eEEEccCCCCCCC-----CCCcccEEEEC-CchhhhccccccCCc
Q 043626           73 ----GHQWIGLDISQSMLNIALEREV-E----G--DLLLGDMGQGLGL-----RPGVVDGAISI-SAVQWLCNADKASHE  135 (291)
Q Consensus        73 ----g~~v~gvDis~~ml~~a~~~~~-~----~--~~~~~D~~~~~~~-----~~~~fD~Vis~-~~l~~l~~~~~~~~~  135 (291)
                          ...++++|||.++|+.+..+.. .    +  .-+++|..+.+.+     ......+++.. +++..+        +
T Consensus       100 ~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf--------~  171 (319)
T TIGR03439       100 RQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF--------S  171 (319)
T ss_pred             hcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC--------C
Confidence                2679999999999999988765 2    3  3377777554321     12345566553 344433        3


Q ss_pred             hHHHHHHHHHHHHH-hccCCcEEEEEE
Q 043626          136 PRLRLKAFFGSLYR-CLARGARAVFQI  161 (291)
Q Consensus       136 p~~~l~~~l~~l~~-~LkpgG~lv~~~  161 (291)
                      |.. ...||+.+.+ +|+|||.+++.+
T Consensus       172 ~~e-a~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       172 RPE-AAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             HHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence            433 5689999999 999999999954

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.67  E-value=1.8e-07  Score=91.64  Aligned_cols=147  Identities=16%  Similarity=0.161  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCC----CCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-----CCcce
Q 043626           29 IIDIQAKLSERALELLALPDD----GVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-----EVEGD   97 (291)
Q Consensus        29 ~~~iq~~~~~~~lelL~~~~~----~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-----~~~~~   97 (291)
                      +...|....+.....+.+...    .....+||||||.|.++..++...  ..++|||++...+..+...     ..++.
T Consensus       321 ~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~  400 (506)
T PRK01544        321 LSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFL  400 (506)
T ss_pred             CCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEE
Confidence            444566665655555543211    124689999999999999999885  8999999999877666544     23456


Q ss_pred             EEEccCCCC-CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626           98 LLLGDMGQG-LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA  176 (291)
Q Consensus        98 ~~~~D~~~~-~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~  176 (291)
                      ++..|+... .-|+++++|.|+.++.-.|...   +++.-+---..|+..++++|+|||.+.+.+-  .....+.....+
T Consensus       401 ~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKk---rh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD--~~~y~~~~~~~~  475 (506)
T PRK01544        401 LFPNNLDLILNDLPNNSLDGIYILFPDPWIKN---KQKKKRIFNKERLKILQDKLKDNGNLVFASD--IENYFYEAIELI  475 (506)
T ss_pred             EEcCCHHHHHHhcCcccccEEEEECCCCCCCC---CCccccccCHHHHHHHHHhcCCCCEEEEEcC--CHHHHHHHHHHH
Confidence            676665221 1256889999999988888532   2222222236899999999999999998873  233334445555


Q ss_pred             HHcC
Q 043626          177 MRAG  180 (291)
Q Consensus       177 ~~aG  180 (291)
                      ...+
T Consensus       476 ~~~~  479 (506)
T PRK01544        476 QQNG  479 (506)
T ss_pred             HhCC
Confidence            5444

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.66  E-value=3.5e-08  Score=87.98  Aligned_cols=101  Identities=26%  Similarity=0.335  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +..+||+|||.|-.+..-  -...++|+|++...+..++..... .+..+|+ ..+|++..+||.+++++++||+..   
T Consensus        46 gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~-l~~p~~~~s~d~~lsiavihhlsT---  118 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADA-LKLPFREESFDAALSIAVIHHLST---  118 (293)
T ss_pred             cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCc-eeehhhh-hcCCCCCCccccchhhhhhhhhhh---
Confidence            679999999998644321  235799999999998888766443 4777887 558999999999999999999954   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                           ..+-..+++++.++|+|||...+..++-
T Consensus       119 -----~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  119 -----RERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             -----HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence                 3335689999999999999998877654

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.65  E-value=3.2e-07  Score=86.53  Aligned_cols=143  Identities=22%  Similarity=0.143  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC-------cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV-------EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~  104 (291)
                      |......+.+.+.      +.+|||+-|=||.++.+.+..|. +|++||+|...|++|++|..       .+.++++|+.
T Consensus       205 qR~~R~~l~~~~~------GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         205 QRDNRRALGELAA------GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             hHHHHHHHhhhcc------CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            4444444444443      45999999999999999999995 99999999999999999863       2578999986


Q ss_pred             CCCCC---CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---hHHHHHHHHHHHH
Q 043626          105 QGLGL---RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---VAQRELILGAAMR  178 (291)
Q Consensus       105 ~~~~~---~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---~~~~~~i~~~~~~  178 (291)
                      +.+.-   ...+||+||.... . +....+....-.+.+..++..+.++|+|||.+++......   ..-.+.+...+..
T Consensus       279 ~~l~~~~~~g~~fDlIilDPP-s-F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~  356 (393)
T COG1092         279 KWLRKAERRGEKFDLIILDPP-S-FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAA  356 (393)
T ss_pred             HHHHHHHhcCCcccEEEECCc-c-cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHh
Confidence            54432   2349999997521 1 1111122244556678889999999999999999765432   2234556666666


Q ss_pred             cCCCC
Q 043626          179 AGFAG  183 (291)
Q Consensus       179 aGF~~  183 (291)
                      +|...
T Consensus       357 ~~~~~  361 (393)
T COG1092         357 AGRRA  361 (393)
T ss_pred             cCCcE
Confidence            66553

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.64  E-value=8.6e-08  Score=81.39  Aligned_cols=114  Identities=24%  Similarity=0.229  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--Ce---------EEEEeCCHHHHHHHHhcCCc------
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQ---------WIGLDISQSMLNIALEREVE------   95 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~---------v~gvDis~~ml~~a~~~~~~------   95 (291)
                      ...++..++.+....+   +..|||--||+|.+....+..+  ..         ++|+|+++.+++.|+++...      
T Consensus        13 ~~~lA~~ll~la~~~~---~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   13 RPTLAAALLNLAGWRP---GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             -HHHHHHHHHHTT--T---TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CHHHHHHHHHHhCCCC---CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            3467777777776665   6799999999999887665443  33         88999999999999987642      


Q ss_pred             ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccC
Q 043626           96 GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLAR  153 (291)
Q Consensus        96 ~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkp  153 (291)
                      +.+...|+ ..+++..+++|.||++..+.--...   ..+...-+..+++.+.++|++
T Consensus        90 i~~~~~D~-~~l~~~~~~~d~IvtnPPyG~r~~~---~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   90 IDFIQWDA-RELPLPDGSVDAIVTNPPYGRRLGS---KKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             EEEEE--G-GGGGGTTSBSCEEEEE--STTSHCH---HHHHHHHHHHHHHHHHCHSTT
T ss_pred             eEEEecch-hhcccccCCCCEEEECcchhhhccC---HHHHHHHHHHHHHHHHHHCCC
Confidence            57888888 4567778899999998555321110   011233357888999999999

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.63  E-value=3.7e-07  Score=83.75  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      -...+|+|.|.|..+..+.....++-+++.....+..+.... +.+..+-+|+.+..|    +-|+|++-+++||+.|  
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P----~~daI~mkWiLhdwtD--  251 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP----KGDAIWMKWILHDWTD--  251 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC----CcCeEEEEeecccCCh--
Confidence            358999999999999988887788999999999888888877 778888899877655    3469999999999977  


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                             +.+..+|++++..|+|||.+++.
T Consensus       252 -------edcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  252 -------EDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             -------HHHHHHHHHHHHhCCCCCEEEEE
Confidence                   34899999999999999999984

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.60  E-value=1.2e-06  Score=79.49  Aligned_cols=144  Identities=17%  Similarity=0.105  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+||-||-|.|..+..+.++.  ..++.|||++..++.|++.++.         +.++..|..+.+.-...+||+||+.
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            5699999999999999999986  7999999999999999987654         4667777655554334589999986


Q ss_pred             CchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCC
Q 043626          121 SAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAGGVVVDYPHSSKSR  196 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~  196 (291)
                      +.-. .        .|...  -..|++.++++|+++|.++.+....  ..+....+...+.+. |.......++......
T Consensus       157 ~tdp-~--------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v-f~~~~~~~~~ipt~~~  226 (282)
T COG0421         157 STDP-V--------GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV-FSIVPPYVAPIPTYPS  226 (282)
T ss_pred             CCCC-C--------CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh-ccccccceeccceecC
Confidence            4432 1        11111  2689999999999999999983211  113344555555556 6652222233333344


Q ss_pred             cEEEEEeeC
Q 043626          197 KEFLVLTCG  205 (291)
Q Consensus       197 ~~~l~l~~g  205 (291)
                      ..|-+....
T Consensus       227 g~~~f~~~s  235 (282)
T COG0421         227 GFWGFIVAS  235 (282)
T ss_pred             CceEEEEee
Confidence            444444433

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.58  E-value=1.3e-06  Score=78.50  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCch----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhcC-C------c------------------
Q 043626           52 PRLLLDIGCGSGL----SGETLSEN-------GHQWIGLDISQSMLNIALERE-V------E------------------   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~----~~~~L~~~-------g~~v~gvDis~~ml~~a~~~~-~------~------------------   95 (291)
                      +.+|+-+||+||-    ++..|.+.       ...|+|.|||..+|+.|+.-. +      +                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            6799999999995    33333333       267999999999999997521 1      0                  


Q ss_pred             ---------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           96 ---------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        96 ---------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                               +.|-..|+....+ ..+.||+|+|-.|+-++..         ..-..++..++..|+|||.|++-.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~---------~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDE---------ETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCH---------HHHHHHHHHHHHHhCCCCEEEEcc
Confidence                     4566677655443 5778999999999988743         225689999999999999999853

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=2.1e-07  Score=75.16  Aligned_cols=96  Identities=25%  Similarity=0.357  Sum_probs=70.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cc
Q 043626           22 KYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EG   96 (291)
Q Consensus        22 ~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~   96 (291)
                      +|-+.+   ++...|..-+-+-...-+   +..|+|+|||.|.+....+-.+ ..++|+||.+.+|+.+..|..    ++
T Consensus        25 QY~T~p---~iAasM~~~Ih~TygdiE---gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi   98 (185)
T KOG3420|consen   25 QYPTRP---HIAASMLYTIHNTYGDIE---GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI   98 (185)
T ss_pred             hCCCcH---HHHHHHHHHHHhhhcccc---CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh
Confidence            455544   233344444444444333   7799999999999997776665 789999999999999998865    37


Q ss_pred             eEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           97 DLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        97 ~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +++++|+.. +-+..+.||.+|.+..+.
T Consensus        99 dlLqcdild-le~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   99 DLLQCDILD-LELKGGIFDTAVINPPFG  125 (185)
T ss_pred             heeeeeccc-hhccCCeEeeEEecCCCC
Confidence            899999954 445568999999886654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.55  E-value=1.1e-06  Score=82.78  Aligned_cols=127  Identities=15%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      ...+.+.+++.+...    +..|||++||+|.++..|+.....|+|||+|+.|++.|+++..     ++.++.+|+...+
T Consensus       192 ~e~l~~~v~~~~~~~----~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l  267 (362)
T PRK05031        192 NEKMLEWALDATKGS----KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT  267 (362)
T ss_pred             HHHHHHHHHHHhhcC----CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence            345666666665432    2479999999999999999888899999999999999988642     4678988875433


Q ss_pred             C-CC--------------CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626          108 G-LR--------------PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI  172 (291)
Q Consensus       108 ~-~~--------------~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i  172 (291)
                      + +.              ...||+|+....        ....     ...++..+.   ++++.++++..|..  ....+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP--------R~G~-----~~~~l~~l~---~~~~ivyvSC~p~t--larDl  329 (362)
T PRK05031        268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPP--------RAGL-----DDETLKLVQ---AYERILYISCNPET--LCENL  329 (362)
T ss_pred             HHHhhcccccccccccccCCCCCEEEECCC--------CCCC-----cHHHHHHHH---ccCCEEEEEeCHHH--HHHHH
Confidence            2 10              125899996422        1111     124444444   37899999986632  23334


Q ss_pred             HHHHHHcCCCC
Q 043626          173 LGAAMRAGFAG  183 (291)
Q Consensus       173 ~~~~~~aGF~~  183 (291)
                      ... .. ||.-
T Consensus       330 ~~L-~~-gY~l  338 (362)
T PRK05031        330 ETL-SQ-THKV  338 (362)
T ss_pred             HHH-cC-CcEE
Confidence            433 33 7864

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.55  E-value=1.8e-06  Score=77.55  Aligned_cols=131  Identities=19%  Similarity=0.102  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C---CeEEEEeCCHHHHHHHHhcCC-----cc-eEEEccCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G---HQWIGLDISQSMLNIALEREV-----EG-DLLLGDMG  104 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g---~~v~gvDis~~ml~~a~~~~~-----~~-~~~~~D~~  104 (291)
                      ++...++..|....  .+.+||||.||.|....-..+. .   ..+...|.|+..++..++...     ++ .|.++|+.
T Consensus       121 ~~i~~ai~~L~~~g--~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf  198 (311)
T PF12147_consen  121 ELIRQAIARLREQG--RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF  198 (311)
T ss_pred             HHHHHHHHHHHhcC--CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence            34444455443333  2789999999999976555543 2   689999999999988776432     34 89999986


Q ss_pred             CCCCC--CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626          105 QGLGL--RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA  176 (291)
Q Consensus       105 ~~~~~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~  176 (291)
                      +.-.+  .....+++|++..++.++|.        .-+...+..++++|.|||.++.+--|.+ .|+++|...+
T Consensus       199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn--------~lv~~sl~gl~~al~pgG~lIyTgQPwH-PQle~IAr~L  263 (311)
T PF12147_consen  199 DRDSLAALDPAPTLAIVSGLYELFPDN--------DLVRRSLAGLARALEPGGYLIYTGQPWH-PQLEMIARVL  263 (311)
T ss_pred             CHhHhhccCCCCCEEEEecchhhCCcH--------HHHHHHHHHHHHHhCCCcEEEEcCCCCC-cchHHHHHHH
Confidence            53222  23457999999988888662        2256789999999999999999876655 3444444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.54  E-value=4.4e-07  Score=77.72  Aligned_cols=99  Identities=17%  Similarity=0.073  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-C-CCC-cccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-L-RPG-VVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~-~~~-~fD~Vis~~  121 (291)
                      +.+|||++||+|.++..++.+| ..+++||+++.+++.++++..      .+.++.+|+...+. + ... .||+|+...
T Consensus        50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP  129 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP  129 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence            6799999999999999999998 589999999999998887642      35788888744332 1 122 377777654


Q ss_pred             chhhhccccccCCchHHHHHHHHHHH--HHhccCCcEEEEEEc
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSL--YRCLARGARAVFQIY  162 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l--~~~LkpgG~lv~~~~  162 (291)
                      .+..  .       .   ...++..+  ..+|+++|.+++...
T Consensus       130 Py~~--~-------~---~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       130 PFFN--G-------A---LQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             CCCC--C-------c---HHHHHHHHHHCCCCCCCeEEEEEec
Confidence            3321  0       0   23334433  347899999988764

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.53  E-value=1.4e-06  Score=78.11  Aligned_cols=116  Identities=10%  Similarity=-0.104  Sum_probs=85.2

Q ss_pred             hCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCCCCCCCcc
Q 043626           44 LALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        44 L~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~~~~~~f  114 (291)
                      +.++.   +.+||=||.|-|.....++++..+|+.|||++.+++.+++.++.         +.++. .+   .....++|
T Consensus        68 ~~h~~---pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~---~~~~~~~f  140 (262)
T PRK00536         68 CTKKE---LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL---LDLDIKKY  140 (262)
T ss_pred             hhCCC---CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh---hhccCCcC
Confidence            45555   78999999999999999999877999999999999999996654         23332 11   11123689


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCC
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~  183 (291)
                      |+||+-+.+                -..|++.++++|+|||.++.|...-  ..+....+...+.+ .|..
T Consensus       141 DVIIvDs~~----------------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~  194 (262)
T PRK00536        141 DLIICLQEP----------------DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSI  194 (262)
T ss_pred             CEEEEcCCC----------------ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCc
Confidence            999987532                2478899999999999999975321  24445566666665 6863

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.53  E-value=5.2e-07  Score=79.98  Aligned_cols=84  Identities=23%  Similarity=0.282  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~  108 (291)
                      .+...+++...+.+   +..|||||.|||++|..|.+.|..|+++++++.|+....++...      .+++++|...   
T Consensus        45 ~v~~~I~~ka~~k~---tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK---  118 (315)
T KOG0820|consen   45 LVIDQIVEKADLKP---TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK---  118 (315)
T ss_pred             HHHHHHHhccCCCC---CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc---
Confidence            44556666666776   78999999999999999999999999999999999999887653      4778888733   


Q ss_pred             CCCCcccEEEECCchh
Q 043626          109 LRPGVVDGAISISAVQ  124 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~  124 (291)
                      .+..-||+||++-..+
T Consensus       119 ~d~P~fd~cVsNlPyq  134 (315)
T KOG0820|consen  119 TDLPRFDGCVSNLPYQ  134 (315)
T ss_pred             CCCcccceeeccCCcc
Confidence            2234799999974443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.52  E-value=7.4e-07  Score=72.17  Aligned_cols=104  Identities=19%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             eEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHH
Q 043626           75 QWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSL  147 (291)
Q Consensus        75 ~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l  147 (291)
                      +|+|+||.+.+++.++++..      .+.+++.+-.....+-+ +++|+|+.|  |.||+.+|+....-...-...++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            58999999999999988764      26777766533222223 589999987  9999999988876666677899999


Q ss_pred             HHhccCCcEEEEEEcCCCh---HHHHHHHHHHHHcC
Q 043626          148 YRCLARGARAVFQIYPESV---AQRELILGAAMRAG  180 (291)
Q Consensus       148 ~~~LkpgG~lv~~~~~~~~---~~~~~i~~~~~~aG  180 (291)
                      ..+|+|||.+++..|+.++   ++.+.+.+++...-
T Consensus        79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~  114 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD  114 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred             HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            9999999999999999665   35555666665543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.51  E-value=4e-07  Score=81.08  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC------CCCcccE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL------RPGVVDG  116 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~------~~~~fD~  116 (291)
                      +.+|||||+++|.++..++..   +.+++.+|+++...+.|++.+.      .++++.+|..+.++-      ..++||+
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            569999999999999999864   4799999999999999988663      378888887554432      1368999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+.-.        +      ......+|..+.++|+|||.+++.
T Consensus       160 iFiDa--------d------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        160 IFVDA--------D------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             EEecC--------C------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            99531        1      122567888899999999999984

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.50  E-value=2.3e-06  Score=76.85  Aligned_cols=120  Identities=18%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh--cC---Cc-------------------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE--RE---VE-------------------------------   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~--~~---~~-------------------------------   95 (291)
                      ..+||--|||.|.++..++.+|..+.|.|.|--|+-...-  +.   .+                               
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            5699999999999999999999999999999999754321  10   00                               


Q ss_pred             ---------ceEEEccCCCCCCCC--CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-
Q 043626           96 ---------GDLLLGDMGQGLGLR--PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-  163 (291)
Q Consensus        96 ---------~~~~~~D~~~~~~~~--~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-  163 (291)
                               ..+..+|+.+..+-.  .++||+|++.+.+.-..|           +...|..++++|||||..+ .++| 
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N-----------i~~Yi~tI~~lLkpgG~WI-N~GPL  204 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN-----------IIEYIETIEHLLKPGGYWI-NFGPL  204 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH-----------HHHHHHHHHHHhccCCEEE-ecCCc
Confidence                     234455553332222  379999999877765555           8899999999999999555 3322 


Q ss_pred             ---CC----------hHHHHHHHHHHHHcCCCC
Q 043626          164 ---ES----------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       164 ---~~----------~~~~~~i~~~~~~aGF~~  183 (291)
                         ..          .-..++|..++.+.||+.
T Consensus       205 lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~  237 (270)
T PF07942_consen  205 LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEI  237 (270)
T ss_pred             cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEE
Confidence               11          124678999999999985

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.46  E-value=4.9e-07  Score=85.53  Aligned_cols=108  Identities=16%  Similarity=0.064  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      .+...+++.+....+  ..+|||++||+|..+..++...  ..|+++|+++.+++.++++..     .+.++.+|+...+
T Consensus        43 dl~~~v~~~~~~~~~--~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l  120 (382)
T PRK04338         43 DISVLVLRAFGPKLP--RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL  120 (382)
T ss_pred             hHHHHHHHHHHhhcC--CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence            445555555532211  3589999999999999998753  489999999999999987652     2457888874333


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .. .+.||+|++...               .....++..+...+++||.++++
T Consensus       121 ~~-~~~fD~V~lDP~---------------Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        121 HE-ERKFDVVDIDPF---------------GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             hh-cCCCCEEEECCC---------------CCcHHHHHHHHHHhcCCCEEEEE
Confidence            21 467999997631               11346778877889999999994

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.45  E-value=1.2e-06  Score=84.48  Aligned_cols=138  Identities=17%  Similarity=0.190  Sum_probs=81.4

Q ss_pred             CCcccCCchhhccccccc----hhHHHHHHHHHHHHHHhCCCCCC-CCCeEEEEcCCCchhHHHHHHcC------CeEEE
Q 043626           10 PPEIFYDDTEARKYTSSS----RIIDIQAKLSERALELLALPDDG-VPRLLLDIGCGSGLSGETLSENG------HQWIG   78 (291)
Q Consensus        10 ppe~fy~~~~a~~Y~~~~----~~~~iq~~~~~~~lelL~~~~~~-~~~~VLDiGcGsG~~~~~L~~~g------~~v~g   78 (291)
                      |..-.-+.-++..|....    +...++..+.+.+.+........ ....|||||||+|.+....++.+      .+|++
T Consensus       140 PLqPl~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA  219 (448)
T PF05185_consen  140 PLQPLMDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA  219 (448)
T ss_dssp             ---TTTS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE
T ss_pred             CCCCchhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE
Confidence            333344445566665532    23445555655555655433210 13589999999999987776654      69999


Q ss_pred             EeCCHHHHHHHHhc----C--CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhcc
Q 043626           79 LDISQSMLNIALER----E--VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLA  152 (291)
Q Consensus        79 vDis~~ml~~a~~~----~--~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lk  152 (291)
                      |+-++.++..++.+    .  ..+.++.+|+.+ +.. +..+|+|||=..=..+++.         .....+....+.|+
T Consensus       220 VEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~-v~l-pekvDIIVSElLGsfg~nE---------l~pE~Lda~~rfLk  288 (448)
T PF05185_consen  220 VEKNPNAVVTLQKRVNANGWGDKVTVIHGDMRE-VEL-PEKVDIIVSELLGSFGDNE---------LSPECLDAADRFLK  288 (448)
T ss_dssp             EESSTHHHHHHHHHHHHTTTTTTEEEEES-TTT-SCH-SS-EEEEEE---BTTBTTT---------SHHHHHHHGGGGEE
T ss_pred             EcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccC-CCC-CCceeEEEEeccCCccccc---------cCHHHHHHHHhhcC
Confidence            99999877655332    1  348999999954 432 4599999985332233331         13456788889999


Q ss_pred             CCcEEE
Q 043626          153 RGARAV  158 (291)
Q Consensus       153 pgG~lv  158 (291)
                      |||.++
T Consensus       289 p~Gi~I  294 (448)
T PF05185_consen  289 PDGIMI  294 (448)
T ss_dssp             EEEEEE
T ss_pred             CCCEEe
Confidence            999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.45  E-value=2.6e-06  Score=66.82  Aligned_cols=96  Identities=30%  Similarity=0.407  Sum_probs=70.3

Q ss_pred             EEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC--c---ceEEEccCCC-CCCCCC-CcccEEEECCchh
Q 043626           55 LLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV--E---GDLLLGDMGQ-GLGLRP-GVVDGAISISAVQ  124 (291)
Q Consensus        55 VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~--~---~~~~~~D~~~-~~~~~~-~~fD~Vis~~~l~  124 (291)
                      +||+|||+|... .+....   ..++|+|+++.++..+.....  .   +.++..|... .+++.. ..||++.+...++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999976 444433   489999999999998655432  1   4677777644 367766 4899994444444


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      |. +           ....+..+.+.|+|+|.+++....
T Consensus       131 ~~-~-----------~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         131 LL-P-----------PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             cC-C-----------HHHHHHHHHHhcCCCcEEEEEecc
Confidence            33 2           457899999999999999987654

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.9e-06  Score=82.68  Aligned_cols=142  Identities=23%  Similarity=0.237  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCC
Q 043626           31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQ  105 (291)
Q Consensus        31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~  105 (291)
                      .+...|.+.+++.+...+   ..+|||+=||.|.++..|++....|+|+|+++.+++.|+++..     ++.|..++..+
T Consensus       276 ~~~ekl~~~a~~~~~~~~---~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~  352 (432)
T COG2265         276 AVAEKLYETALEWLELAG---GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHHHhhcC---CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence            345688999999998765   6799999999999999999999999999999999999988653     36788888754


Q ss_pred             CCCC--CCCcccEEEECCchhhhccccccCCchHHHHH-HHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          106 GLGL--RPGVVDGAISISAVQWLCNADKASHEPRLRLK-AFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       106 ~~~~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~-~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                      ..+-  ....+|.||..        +      |+..+. .+++.+. -++|-..++++.   |+..+..=...+...|+.
T Consensus       353 ~~~~~~~~~~~d~VvvD--------P------PR~G~~~~~lk~l~-~~~p~~IvYVSC---NP~TlaRDl~~L~~~gy~  414 (432)
T COG2265         353 FTPAWWEGYKPDVVVVD--------P------PRAGADREVLKQLA-KLKPKRIVYVSC---NPATLARDLAILASTGYE  414 (432)
T ss_pred             HhhhccccCCCCEEEEC--------C------CCCCCCHHHHHHHH-hcCCCcEEEEeC---CHHHHHHHHHHHHhCCeE
Confidence            3332  23578999953        2      222243 4454444 457888899988   555555556667777763


Q ss_pred             C---cEEEeCCCCC
Q 043626          183 G---GVVVDYPHSS  193 (291)
Q Consensus       183 ~---~~~~~~p~~~  193 (291)
                      -   ..+--||++.
T Consensus       415 i~~v~~~DmFP~T~  428 (432)
T COG2265         415 IERVQPFDMFPHTH  428 (432)
T ss_pred             EEEEEEeccCCCcc
Confidence            2   2222356663

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.45  E-value=1.3e-07  Score=80.52  Aligned_cols=117  Identities=15%  Similarity=0.072  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCC
Q 043626           35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~  106 (291)
                      .+.+.+.+.|... -  .+.++||+.||||.++...+.+| ..|+.||.++..+...+++...      +.++..|....
T Consensus        27 rvrealFniL~~~~~--~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~  104 (183)
T PF03602_consen   27 RVREALFNILQPRNL--EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF  104 (183)
T ss_dssp             HHHHHHHHHHHCH-H--TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred             HHHHHHHHHhccccc--CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence            4556666666543 2  17899999999999999999998 7999999999999999887642      56778885433


Q ss_pred             CC-C--CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH--HhccCCcEEEEEEcCC
Q 043626          107 LG-L--RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY--RCLARGARAVFQIYPE  164 (291)
Q Consensus       107 ~~-~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~--~~LkpgG~lv~~~~~~  164 (291)
                      +. .  ....||+|++......-.           .+..++..+.  .+|+++|.+++.....
T Consensus       105 l~~~~~~~~~fDiIflDPPY~~~~-----------~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  105 LLKLAKKGEKFDIIFLDPPYAKGL-----------YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHCTS-EEEEEE--STTSCH-----------HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHhhcccCCCceEEEECCCcccch-----------HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            32 1  367999999874443210           0245666666  7899999999987543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.43  E-value=5.6e-06  Score=73.79  Aligned_cols=123  Identities=19%  Similarity=0.087  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCC-cccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPG-VVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~-~fD~Vis  119 (291)
                      +.+||=||-|.|.....+.++.  ..+++|||++.+++.|++.++         .+.++..|....+.-... .||+||+
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~  156 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV  156 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence            6799999999999999999875  789999999999999988543         357888886444433344 8999997


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGF  181 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF  181 (291)
                      ...-..-+.       +..--..|++.+.++|+|||.++++...  ........+...+.....
T Consensus       157 D~~dp~~~~-------~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  157 DLTDPDGPA-------PNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             ESSSTTSCG-------GGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred             eCCCCCCCc-------ccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence            533211110       0011258999999999999999998632  344556666776666644

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.42  E-value=3.8e-06  Score=78.78  Aligned_cols=137  Identities=15%  Similarity=0.079  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~  107 (291)
                      ...|.+.+++.+...    +..|||+|||+|.++..|+.....|+|||+++.|++.|+++..     ++.++.+|+...+
T Consensus       183 ~~~l~~~v~~~~~~~----~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~  258 (353)
T TIGR02143       183 NIKMLEWACEVTQGS----KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT  258 (353)
T ss_pred             HHHHHHHHHHHhhcC----CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence            346677777776533    2369999999999999999888899999999999999998652     3678888875433


Q ss_pred             C-------C---C-----CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626          108 G-------L---R-----PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI  172 (291)
Q Consensus       108 ~-------~---~-----~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i  172 (291)
                      +       +   .     ...||+|+....        ....     ...++..+.   +|++.++++..|..  ....+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--------R~G~-----~~~~l~~l~---~~~~ivYvsC~p~t--laRDl  320 (353)
T TIGR02143       259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP--------RAGL-----DPDTCKLVQ---AYERILYISCNPET--LKANL  320 (353)
T ss_pred             HHHhhccccccccccccccCCCCEEEECCC--------CCCC-----cHHHHHHHH---cCCcEEEEEcCHHH--HHHHH
Confidence            2       1   0     123798885421        1111     124444443   47999999985532  33344


Q ss_pred             HHHHHHcCCCC--cEEEe-CCCCC
Q 043626          173 LGAAMRAGFAG--GVVVD-YPHSS  193 (291)
Q Consensus       173 ~~~~~~aGF~~--~~~~~-~p~~~  193 (291)
                      .. +. .||.-  ...+| ||++.
T Consensus       321 ~~-L~-~~Y~l~~v~~~DmFP~T~  342 (353)
T TIGR02143       321 EQ-LS-ETHRVERFALFDQFPYTH  342 (353)
T ss_pred             HH-Hh-cCcEEEEEEEcccCCCCC
Confidence            43 32 34654  22233 46653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.3e-06  Score=74.85  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             HHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc--------------
Q 043626           36 LSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE--------------   95 (291)
Q Consensus        36 ~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~--------------   95 (291)
                      |-..+++.|.  +.+   +...||+|.|||.++..++..    |...+|||.-+..++.++++...              
T Consensus        68 mha~~le~L~~~L~p---G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   68 MHATALEYLDDHLQP---GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             HHHHHHHHHHHhhcc---CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            4445566665  555   789999999999998877743    45569999999999999886532              


Q ss_pred             -ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626           96 -GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus        96 -~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                       ..++.+|.....+ ....||.|.+-.+.+                 ..-+.+...|++||++++-..+..
T Consensus       145 ~l~ivvGDgr~g~~-e~a~YDaIhvGAaa~-----------------~~pq~l~dqL~~gGrllip~~~~~  197 (237)
T KOG1661|consen  145 ELSIVVGDGRKGYA-EQAPYDAIHVGAAAS-----------------ELPQELLDQLKPGGRLLIPVGQDG  197 (237)
T ss_pred             ceEEEeCCccccCC-ccCCcceEEEccCcc-----------------ccHHHHHHhhccCCeEEEeecccC
Confidence             4677888644333 467899999875543                 334567888999999999876543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=1.9e-05  Score=68.02  Aligned_cols=129  Identities=19%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~  121 (291)
                      +..|+||||-+|.+++.+++..   ..|+|+|+.|-      +-.+.+.++++|+...-       .+....+|+|+|-.
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~  119 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM  119 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence            7899999999999999999874   45999999774      22345888999986532       12344579999876


Q ss_pred             chhhhccccccCCchH--HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          122 AVQWLCNADKASHEPR--LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~--~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                      +..---.  ...+++.  .-....+.-+..+|+|||.+++..+....  .+.+...+ +..|.. +.+.-|.+
T Consensus       120 ap~~~g~--~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~-~~~F~~-v~~~KP~a  186 (205)
T COG0293         120 APNTSGN--RSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKAL-RRLFRK-VKIFKPKA  186 (205)
T ss_pred             CCCcCCC--ccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHH-HHhhce-eEEecCcc
Confidence            6510000  0001111  11245566677899999999997554321  12233332 233776 44444444

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.38  E-value=7.1e-07  Score=81.37  Aligned_cols=83  Identities=20%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~  108 (291)
                      -|.+.+++.|...+   +..+||.+||.|..+..+++..   ..|+|+|.++.|++.|+++..   .+.++++|+.+...
T Consensus         6 Vll~Evl~~L~~~p---g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~   82 (296)
T PRK00050          6 VLLDEVVDALAIKP---DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE   82 (296)
T ss_pred             ccHHHHHHhhCCCC---CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence            46788899988765   6799999999999999999874   789999999999999988763   47788888754221


Q ss_pred             CCC---CcccEEEEC
Q 043626          109 LRP---GVVDGAISI  120 (291)
Q Consensus       109 ~~~---~~fD~Vis~  120 (291)
                      ..+   .++|+|++.
T Consensus        83 ~l~~~~~~vDgIl~D   97 (296)
T PRK00050         83 VLAEGLGKVDGILLD   97 (296)
T ss_pred             HHHcCCCccCEEEEC
Confidence            111   278998875

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.37  E-value=2.4e-06  Score=78.50  Aligned_cols=152  Identities=17%  Similarity=0.175  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH---------cCCeEEEEeCCHHHHHHHHhcCC-------cceE
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE---------NGHQWIGLDISQSMLNIALEREV-------EGDL   98 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~---------~g~~v~gvDis~~ml~~a~~~~~-------~~~~   98 (291)
                      .+++.+++++....   +.+|||.+||+|.+...+.+         ....++|+|+++.++..|..+..       ...+
T Consensus        33 ~i~~l~~~~~~~~~---~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i  109 (311)
T PF02384_consen   33 EIVDLMVKLLNPKK---GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI  109 (311)
T ss_dssp             HHHHHHHHHHTT-T---TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred             HHHHHHHhhhhccc---cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence            45666777775554   66899999999998877765         34789999999999998876431       1246


Q ss_pred             EEccCCCCCCCC-CCcccEEEECCchhhh--cccccc---------CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-
Q 043626           99 LLGDMGQGLGLR-PGVVDGAISISAVQWL--CNADKA---------SHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-  165 (291)
Q Consensus        99 ~~~D~~~~~~~~-~~~fD~Vis~~~l~~l--~~~~~~---------~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-  165 (291)
                      ..+|......+. ...||+||++..+.-.  .+....         ...... -..|+..+.+.|++||++++.+...- 
T Consensus       110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L  188 (311)
T PF02384_consen  110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNA-EYAFIEHALSLLKPGGRAAIILPNGFL  188 (311)
T ss_dssp             EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEH-HHHHHHHHHHTEEEEEEEEEEEEHHHH
T ss_pred             cccccccccccccccccccccCCCCccccccccccccccccccccCCCccch-hhhhHHHHHhhcccccceeEEecchhh
Confidence            777764332333 5789999999655422  111000         001112 23588999999999999888663211 


Q ss_pred             --hHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          166 --VAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       166 --~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                        ......+.+.+.+.+.-. .++..|.
T Consensus       189 ~~~~~~~~iR~~ll~~~~i~-aVI~Lp~  215 (311)
T PF02384_consen  189 FSSSSEKKIRKYLLENGYIE-AVISLPS  215 (311)
T ss_dssp             HGSTHHHHHHHHHHHHEEEE-EEEE--T
T ss_pred             hccchHHHHHHHHHhhchhh-EEeeccc
Confidence              113345666666665433 5566654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.37  E-value=1.8e-06  Score=78.37  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCC--CCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLG--LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~--~~~~~fD~Vis~~  121 (291)
                      +.+|||+-|=||.++...+..| .+|++||+|..++++++++..       .+.++..|+.+.+.  -..+.||+||+..
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP  203 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP  203 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred             CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence            5699999999999999988888 689999999999999998742       35788888754332  1246999999863


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .- +.    ++...-.+.+..++..+.++|+|||.+++.....
T Consensus       204 Ps-F~----k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  204 PS-FA----KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             SS-EE----SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             CC-CC----CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            21 11    2233445668889999999999999998876543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=2.7e-06  Score=75.88  Aligned_cols=82  Identities=17%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+++++.....+   +..|||||+|.|.+|..|++.+..|+++++++.++...++..   .+..++.+|+.. .+++.
T Consensus        17 ~v~~kIv~~a~~~~---~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk-~d~~~   92 (259)
T COG0030          17 NVIDKIVEAANISP---GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALK-FDFPS   92 (259)
T ss_pred             HHHHHHHHhcCCCC---CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhc-Ccchh
Confidence            45778888888776   679999999999999999999999999999999999999886   347889999843 44432


Q ss_pred             C-cccEEEEC
Q 043626          112 G-VVDGAISI  120 (291)
Q Consensus       112 ~-~fD~Vis~  120 (291)
                      - .++.||+|
T Consensus        93 l~~~~~vVaN  102 (259)
T COG0030          93 LAQPYKVVAN  102 (259)
T ss_pred             hcCCCEEEEc
Confidence            2 67899988

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=2.2e-05  Score=68.72  Aligned_cols=130  Identities=22%  Similarity=0.213  Sum_probs=94.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEE-EccCCCCCC--CCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLL-LGDMGQGLG--LRPG  112 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~-~~D~~~~~~--~~~~  112 (291)
                      ...+++.+.+...  +..+||||+.||.++..+.+.| .+|+|+|.....+.+-.++.+.+..+ ..++....+  | .+
T Consensus        67 L~~ale~F~l~~k--~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~  143 (245)
T COG1189          67 LEKALEEFELDVK--GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TE  143 (245)
T ss_pred             HHHHHHhcCcCCC--CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-cc
Confidence            4566777777664  7899999999999999999998 89999999999888887776664333 334422111  2 23


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-------------------ChHHHHHHH
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-------------------SVAQRELIL  173 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-------------------~~~~~~~i~  173 (291)
                      ..|+|+|--++-.              +..+|..+..+|++++.+++-+-|.                   ...-...+.
T Consensus       144 ~~d~~v~DvSFIS--------------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~  209 (245)
T COG1189         144 KPDLIVIDVSFIS--------------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE  209 (245)
T ss_pred             CCCeEEEEeehhh--------------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence            6788988643322              6788999999999999988743221                   122456778


Q ss_pred             HHHHHcCCCC
Q 043626          174 GAAMRAGFAG  183 (291)
Q Consensus       174 ~~~~~aGF~~  183 (291)
                      ..+...||..
T Consensus       210 ~~~~~~g~~~  219 (245)
T COG1189         210 NFAKELGFQV  219 (245)
T ss_pred             HHHhhcCcEE
Confidence            8888889986

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.33  E-value=9e-06  Score=69.29  Aligned_cols=113  Identities=18%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             eEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHh-----cCCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           54 LLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALE-----REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~-----~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +|+|||+|.|.-|..|+=.  ...++.+|.+..-+...+.     ...++.+++..+++  +....+||+|+|-.+-.  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~--~~~~~~fd~v~aRAv~~--  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE--PEYRESFDVVTARAVAP--  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH--TTTTT-EEEEEEESSSS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc--cccCCCccEEEeehhcC--
Confidence            8999999999988888754  4789999999976654443     23458889988855  44578999999875543  


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                                   +..++..+..+|++||.+++.-.+...++++.....+...|...
T Consensus       127 -------------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~  170 (184)
T PF02527_consen  127 -------------LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV  170 (184)
T ss_dssp             -------------HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred             -------------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence                         56788889999999999999887776677777766666555543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.31  E-value=1.7e-06  Score=74.61  Aligned_cols=90  Identities=17%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +..|||+.||.|.++..++.  .+..|+++|++|..++.++++..      .+..+++|..+.++  .+.||-|+++..-
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~  179 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMNLPE  179 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TS
T ss_pred             ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEECChH
Confidence            67999999999999999998  56889999999999998877542      25788999855444  7899999987332


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                      .               ...|+..+..++++||.+.
T Consensus       180 ~---------------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  180 S---------------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             S---------------GGGGHHHHHHHEEEEEEEE
T ss_pred             H---------------HHHHHHHHHHHhcCCcEEE
Confidence            2               1267888999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.30  E-value=5.4e-06  Score=75.55  Aligned_cols=97  Identities=22%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||+|||+|.++...+..| .+|++|+-| .|.+.|+....      .+.++.+.+++ +.+ ++..|+|||-..-.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEd-ieL-PEk~DviISEPMG~  254 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIED-IEL-PEKVDVIISEPMGY  254 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccc-ccC-chhccEEEeccchh
Confidence            5689999999999999999998 799999985 57777776432      25677776633 333 57899999865444


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      -|-|         .+.....-...+.|+|.|..+-+
T Consensus       255 mL~N---------ERMLEsYl~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  255 MLVN---------ERMLESYLHARKWLKPNGKMFPT  281 (517)
T ss_pred             hhhh---------HHHHHHHHHHHhhcCCCCcccCc
Confidence            4433         11222223456999999987754

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=5e-05  Score=71.28  Aligned_cols=145  Identities=14%  Similarity=0.066  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC----CeEEEEeCCHHHHHHHHhcCCc-----ceEEEcc
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG----HQWIGLDISQSMLNIALEREVE-----GDLLLGD  102 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g----~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D  102 (291)
                      +|..-+..+...|+..+   +.+|||++++.|.-|.+|++..    ..|+++|+++.-+....++...     +.++..|
T Consensus       140 vQd~sS~l~a~~L~p~p---ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d  216 (355)
T COG0144         140 VQDEASQLPALVLDPKP---GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKD  216 (355)
T ss_pred             EcCHHHHHHHHHcCCCC---cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecc
Confidence            45555555556666655   7899999999999999999863    4579999999988887776532     4567777


Q ss_pred             CCCCCC--CCCCcccEEEECCc---hhhh-ccccccCCchHH-------HHHHHHHHHHHhccCCcEEEEEEcCCChHHH
Q 043626          103 MGQGLG--LRPGVVDGAISISA---VQWL-CNADKASHEPRL-------RLKAFFGSLYRCLARGARAVFQIYPESVAQR  169 (291)
Q Consensus       103 ~~~~~~--~~~~~fD~Vis~~~---l~~l-~~~~~~~~~p~~-------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  169 (291)
                      ......  ...+.||.|+.-..   ..-+ .+++........       -..++|..+.++|||||.++.++..-.+++-
T Consensus       217 ~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN  296 (355)
T COG0144         217 ARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN  296 (355)
T ss_pred             cccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence            533221  12235999996421   1111 122222211111       1367899999999999999998877555554


Q ss_pred             HHHHHHHHHc
Q 043626          170 ELILGAAMRA  179 (291)
Q Consensus       170 ~~i~~~~~~a  179 (291)
                      +.....+.+.
T Consensus       297 E~vV~~~L~~  306 (355)
T COG0144         297 EEVVERFLER  306 (355)
T ss_pred             HHHHHHHHHh
Confidence            4454444433

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=2.1e-05  Score=72.85  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCe-EEEEeCCHHHHHHHHhcCC-----c-ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQ-WIGLDISQSMLNIALEREV-----E-GDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~-v~gvDis~~ml~~a~~~~~-----~-~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||.-||.|.++..++..|.. |+++||+|.+++.++++..     . +..+++|..+ +....+.||-|+++....
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re-v~~~~~~aDrIim~~p~~  267 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE-VAPELGVADRIIMGLPKS  267 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH-hhhccccCCEEEeCCCCc
Confidence            569999999999999999999954 9999999999999988753     1 6789999844 443348899999874431


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChH----HHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVA----QRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~----~~~~i~~~~~~aGF~~  183 (291)
                                     -..|+..+.+++++||.+.+........    ....+...+.+.|+..
T Consensus       268 ---------------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~  315 (341)
T COG2520         268 ---------------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV  315 (341)
T ss_pred             ---------------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence                           2478888999999999988865443333    4567788888887753

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.23  E-value=9.8e-07  Score=75.35  Aligned_cols=128  Identities=15%  Similarity=0.200  Sum_probs=91.0

Q ss_pred             CCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           51 VPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        51 ~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      ++.++||+|+|.|-++..++....+|++.+.|..|....+...-++   ..-+ +.+. .+-.||+|.|...+.-..+  
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynV---l~~~-ew~~-t~~k~dli~clNlLDRc~~--  184 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNV---LTEI-EWLQ-TDVKLDLILCLNLLDRCFD--  184 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCce---eeeh-hhhh-cCceeehHHHHHHHHhhcC--
Confidence            3579999999999999999999889999999999999988764432   1111 1110 1236899999888875444  


Q ss_pred             ccCCchHHHHHHHHHHHHHhccC-CcEEEEEE------c-----------CC---------ChHHHHHHHHHHHHcCCCC
Q 043626          131 KASHEPRLRLKAFFGSLYRCLAR-GARAVFQI------Y-----------PE---------SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~Lkp-gG~lv~~~------~-----------~~---------~~~~~~~i~~~~~~aGF~~  183 (291)
                               .-.+++.+..+|.| +|++++..      |           |+         -.++...+.+.+..+||..
T Consensus       185 ---------p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~v  255 (288)
T KOG3987|consen  185 ---------PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRV  255 (288)
T ss_pred             ---------hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchh
Confidence                     44788899999999 89888731      1           10         0236677888999999976


Q ss_pred             cEEEeCCCCCC
Q 043626          184 GVVVDYPHSSK  194 (291)
Q Consensus       184 ~~~~~~p~~~~  194 (291)
                      ......|...+
T Consensus       256 eawTrlPYLCE  266 (288)
T KOG3987|consen  256 EAWTRLPYLCE  266 (288)
T ss_pred             hhhhcCCeecc
Confidence            44444555544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.22  E-value=2.1e-05  Score=71.30  Aligned_cols=118  Identities=19%  Similarity=0.094  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceEE-----EccC-CCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDLL-----LGDM-GQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~~-----~~D~-~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||+|||+|..+-.+.+.   -.+++++|.|+.|++.++.......-.     ...+ .+..++  ...|+||+.++
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~  111 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYV  111 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehh
Confidence            679999999999877666553   378999999999999887754332111     0111 111222  23499999999


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~  182 (291)
                      |.-|.+         .....+++.+.+.+.+  .+|+.-.+  .....+..+.+.+...|+.
T Consensus       112 L~EL~~---------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~  162 (274)
T PF09243_consen  112 LNELPS---------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH  162 (274)
T ss_pred             hhcCCc---------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence            998854         2256788888888876  55543322  2334566667777777765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.21  E-value=2.4e-05  Score=74.82  Aligned_cols=109  Identities=21%  Similarity=0.274  Sum_probs=89.6

Q ss_pred             CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      .++|-+|||.--+...+-+.| +.++.+|+|+..++....+.    ....+...|+ ..+.|++++||+||....++++.
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-DQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc-hhccCCCcceeEEEecCcccccc
Confidence            389999999999999998888 89999999999988887765    2367888898 56889999999999999999886


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .+.....++ ......+..+.++|++||+.+..+++
T Consensus       129 ~de~a~~~~-~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  129 EDEDALLNT-AHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             CCchhhhhh-HHhhHHHhhHHHHhccCCEEEEEEee
Confidence            544333333 34678899999999999998876653

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=3.1e-05  Score=68.86  Aligned_cols=130  Identities=17%  Similarity=0.172  Sum_probs=98.8

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCC-CC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQ-GL  107 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~-~~  107 (291)
                      ..++.+|.+.+   ++.||+-|+|+|.++..|+..-   .+++-+|+-..-.+.|.+.+.+      +.+.+-|+.. ++
T Consensus        95 a~I~~~L~i~P---GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   95 AMILSMLEIRP---GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHhcCCC---CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence            45677888887   8899999999999999999873   7899999988888888775543      6788888854 23


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~  187 (291)
                      ......+|.|+....-.|.                .+-.++..|+.+|.-++.|.|. -+|++.-++++..+||.....+
T Consensus       172 ~~ks~~aDaVFLDlPaPw~----------------AiPha~~~lk~~g~r~csFSPC-IEQvqrtce~l~~~gf~~i~~v  234 (314)
T KOG2915|consen  172 LIKSLKADAVFLDLPAPWE----------------AIPHAAKILKDEGGRLCSFSPC-IEQVQRTCEALRSLGFIEIETV  234 (314)
T ss_pred             cccccccceEEEcCCChhh----------------hhhhhHHHhhhcCceEEeccHH-HHHHHHHHHHHHhCCCceEEEE
Confidence            4446789999976554443                4455677899888767777553 3788888999999999873333

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.18  E-value=3.3e-06  Score=79.09  Aligned_cols=96  Identities=20%  Similarity=0.273  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..++|+|||.|.....++... ..++|+|.++-.+..+.....      ...++.+|+ ...||++++||++.++-+.+
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~-~~~~fedn~fd~v~~ld~~~  189 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF-GKMPFEDNTFDGVRFLEVVC  189 (364)
T ss_pred             cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh-hcCCCCccccCcEEEEeecc
Confidence            4589999999999999999875 899999999987777665432      245677887 44689999999999999999


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      |.++           ...++.+++++++|||.++.
T Consensus       190 ~~~~-----------~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  190 HAPD-----------LEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             cCCc-----------HHHHHHHHhcccCCCceEEe
Confidence            9988           78999999999999999998

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.14  E-value=0.00015  Score=67.03  Aligned_cols=113  Identities=19%  Similarity=0.088  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +..+|||||++|.++..|.++|..|++||..+ | +........+..+..|.....|. .+.+|+++|-.+-.       
T Consensus       212 g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l-~~~L~~~~~V~h~~~d~fr~~p~-~~~vDwvVcDmve~-------  281 (357)
T PRK11760        212 GMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M-AQSLMDTGQVEHLRADGFKFRPP-RKNVDWLVCDMVEK-------  281 (357)
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c-CHhhhCCCCEEEEeccCcccCCC-CCCCCEEEEecccC-------
Confidence            78999999999999999999999999999654 2 22233345567777775444432 67899999875532       


Q ss_pred             cCCchHHHHHHHHHHHHHhccCC--cEEEEE--EcCC-ChH----HHHHHHHHHHHcCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARG--ARAVFQ--IYPE-SVA----QRELILGAAMRAGFA  182 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~Lkpg--G~lv~~--~~~~-~~~----~~~~i~~~~~~aGF~  182 (291)
                          |    .++..-+...|..|  ..+||.  +... ..+    .++.|.+.+.++|..
T Consensus       282 ----P----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~  333 (357)
T PRK11760        282 ----P----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGIN  333 (357)
T ss_pred             ----H----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence                3    34444555555554  345554  3222 222    234466677778774

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.14  E-value=1.8e-05  Score=67.14  Aligned_cols=118  Identities=18%  Similarity=0.074  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCC
Q 043626           35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~  106 (291)
                      .+.+.+.+.|... -.  +.++||+-+|||.++...+.+| ..++.||.+...+...++|..      +..++..|....
T Consensus        28 rVREalFNil~~~~i~--g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~  105 (187)
T COG0742          28 RVREALFNILAPDEIE--GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA  105 (187)
T ss_pred             HHHHHHHHhccccccC--CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence            5667777887652 32  7899999999999999999998 799999999999999988753      356777887543


Q ss_pred             CCCCCC--cccEEEECCchhhhccccccCCchHHHHHHHHHH--HHHhccCCcEEEEEEcCC
Q 043626          107 LGLRPG--VVDGAISISAVQWLCNADKASHEPRLRLKAFFGS--LYRCLARGARAVFQIYPE  164 (291)
Q Consensus       107 ~~~~~~--~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~--l~~~LkpgG~lv~~~~~~  164 (291)
                      ++-...  +||+|+.-..+++= -     .+    ....+..  -...|+|+|.+++.....
T Consensus       106 L~~~~~~~~FDlVflDPPy~~~-l-----~~----~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         106 LKQLGTREPFDLVFLDPPYAKG-L-----LD----KELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHhcCCCCcccEEEeCCCCccc-h-----hh----HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            332233  59999987665521 0     00    1122222  457799999999987443

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.12  E-value=6.7e-06  Score=77.55  Aligned_cols=94  Identities=13%  Similarity=0.022  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+.||+|..+..++..  | ..|+++|+++.+++.+++|..     ++.+++.|+...+......||+|.... +
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            358999999999999999886  4 689999999999999988653     356788887544332246799998653 2


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      . .             ...|+..+.+.+++||.++++
T Consensus       124 G-s-------------~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       124 G-T-------------PAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             C-C-------------cHHHHHHHHHhcccCCEEEEE
Confidence            1 1             347899999999999999995

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.11  E-value=4.5e-05  Score=71.57  Aligned_cols=68  Identities=31%  Similarity=0.439  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDM  103 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~  103 (291)
                      ....|.+.+++++...+   . .|||+-||+|.++..|+..+..|+|||+++.+++.|+++..     ++.|+.++.
T Consensus       181 ~~~~l~~~~~~~l~~~~---~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  181 QNEKLYEQALEWLDLSK---G-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHHHHHCTT-T---T-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHHHHHHhhcCC---C-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            45688888999988664   3 79999999999999999999999999999999999987653     467887665

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.11  E-value=7.2e-05  Score=67.28  Aligned_cols=83  Identities=19%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLR  110 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~  110 (291)
                      ..+++.+++.+.+.+   +..|||||+|+|.++..|++.+..++++|+++.+++..+++.   ..+.++.+|+.+ +...
T Consensus        16 ~~~~~~Iv~~~~~~~---~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~-~~~~   91 (262)
T PF00398_consen   16 PNIADKIVDALDLSE---GDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK-WDLY   91 (262)
T ss_dssp             HHHHHHHHHHHTCGT---TSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT-SCGG
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhc-cccH
Confidence            367888889888775   789999999999999999999999999999999999999865   457899999854 3322


Q ss_pred             C---CcccEEEEC
Q 043626          111 P---GVVDGAISI  120 (291)
Q Consensus       111 ~---~~fD~Vis~  120 (291)
                      .   .....|+++
T Consensus        92 ~~~~~~~~~vv~N  104 (262)
T PF00398_consen   92 DLLKNQPLLVVGN  104 (262)
T ss_dssp             GHCSSSEEEEEEE
T ss_pred             HhhcCCceEEEEE
Confidence            2   345577776

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.10  E-value=4.3e-05  Score=71.49  Aligned_cols=123  Identities=22%  Similarity=0.130  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC------------------------------------
Q 043626           31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH------------------------------------   74 (291)
Q Consensus        31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~------------------------------------   74 (291)
                      .+-..++..++.+-...+   +..++|-=||||.+....+-.+.                                    
T Consensus       174 pLketLAaAil~lagw~~---~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~  250 (381)
T COG0116         174 PLKETLAAAILLLAGWKP---DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR  250 (381)
T ss_pred             CchHHHHHHHHHHcCCCC---CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence            345577778887777665   56899999999999877765542                                    


Q ss_pred             -----eEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCc--hHHHHH
Q 043626           75 -----QWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHE--PRLRLK  141 (291)
Q Consensus        75 -----~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~--p~~~l~  141 (291)
                           .++|+||++.|++.|+.|...      +.|.++|+ +.++.+.+.+|+||||....     .+...+  ...-..
T Consensus       251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~-~~l~~~~~~~gvvI~NPPYG-----eRlg~~~~v~~LY~  324 (381)
T COG0116         251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA-TDLKEPLEEYGVVISNPPYG-----ERLGSEALVAKLYR  324 (381)
T ss_pred             cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch-hhCCCCCCcCCEEEeCCCcc-----hhcCChhhHHHHHH
Confidence                 378999999999999988643      68999998 44443337999999995442     221111  222245


Q ss_pred             HHHHHHHHhccCCcEEEEEEc
Q 043626          142 AFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       142 ~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .|.+.+.+.++.-++++|+..
T Consensus       325 ~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         325 EFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             HHHHHHHHHhcCCceEEEEcc
Confidence            666777788888889998873

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.07  E-value=8e-05  Score=64.81  Aligned_cols=141  Identities=15%  Similarity=0.042  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhCCCCCCC--CCeEEEEcCCCchhHHHHH--HcCCeEEEEeCCHHHHHHHH---h--cCCcceEEEccC
Q 043626           33 QAKLSERALELLALPDDGV--PRLLLDIGCGSGLSGETLS--ENGHQWIGLDISQSMLNIAL---E--REVEGDLLLGDM  103 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~--~~~VLDiGcGsG~~~~~L~--~~g~~v~gvDis~~ml~~a~---~--~~~~~~~~~~D~  103 (291)
                      ..-+..++++.+..-+...  +.+++|||+|.|.-|..|+  .....++-+|....-+...+   .  ...++.++++.+
T Consensus        47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra  126 (215)
T COG0357          47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA  126 (215)
T ss_pred             HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH
Confidence            3444555565554322111  3699999999999888876  33456999999886544433   2  234588898888


Q ss_pred             CCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          104 GQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       104 ~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ++.-.-... ||+|+|-.+-.               +..++..+...|++||.+++..+....++......+....||.-
T Consensus       127 E~~~~~~~~-~D~vtsRAva~---------------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~  190 (215)
T COG0357         127 EEFGQEKKQ-YDVVTSRAVAS---------------LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQV  190 (215)
T ss_pred             hhccccccc-CcEEEeehccc---------------hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcE
Confidence            442221111 99999864432               56788889999999999887665555567777777778887775


Q ss_pred             cEEEeC
Q 043626          184 GVVVDY  189 (291)
Q Consensus       184 ~~~~~~  189 (291)
                      ..+..+
T Consensus       191 ~~~~~~  196 (215)
T COG0357         191 EKVFSL  196 (215)
T ss_pred             EEEEEe
Confidence            333333

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=7.2e-05  Score=63.12  Aligned_cols=107  Identities=17%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCC-------CCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLG-DMGQGL-------GLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~-------~~~~~~fD~Vis~  120 (291)
                      +.+|||+||.+|.+++...++.   ..|.|||+-.-      .-...+.++.+ |+.+..       ..+....|+|+|.
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD  143 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD  143 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence            6799999999999999988873   78999998331      11122445554 664421       1345678999987


Q ss_pred             CchhhhccccccCCc-hHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626          121 SAVQWLCNADKASHE-PRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~-p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      ++...--.. ...|. .-.-...++-.....+.|+|.+++.+|...
T Consensus       144 MapnaTGvr-~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  144 MAPNATGVR-IRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             cCCCCcCcc-hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            654211000 00000 001123445555677889999999998654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.01  E-value=4.1e-05  Score=78.05  Aligned_cols=89  Identities=21%  Similarity=0.214  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------------------------------------
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---------------------------------------   72 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---------------------------------------   72 (291)
                      +...++..++.+.....+  +..++|.+||+|.+....+..                                       
T Consensus       173 l~etlAaa~l~~a~w~~~--~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        173 LKENLAAAILLRSGWPQE--GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CcHHHHHHHHHHcCCCCC--CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            456778888877666332  679999999999988665431                                       


Q ss_pred             -----CCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCC--CCCcccEEEECCch
Q 043626           73 -----GHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGL--RPGVVDGAISISAV  123 (291)
Q Consensus        73 -----g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~--~~~~fD~Vis~~~l  123 (291)
                           ...++|+|+++.+++.|+.|...      +.+..+|+.+ ++.  ..++||+||+|..+
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~-~~~~~~~~~~d~IvtNPPY  313 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVAD-LKNPLPKGPTGLVISNPPY  313 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhh-cccccccCCCCEEEECCCC
Confidence                 12589999999999999988532      5788889844 332  23579999999544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.96  E-value=4.3e-05  Score=66.26  Aligned_cols=129  Identities=22%  Similarity=0.214  Sum_probs=86.4

Q ss_pred             EEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCc-ccEEEECCchhh
Q 043626           55 LLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGV-VDGAISISAVQW  125 (291)
Q Consensus        55 VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~-fD~Vis~~~l~~  125 (291)
                      |.||||-=|.+...|.+.|  ..++++|+++.-++.|+++..      .+++.++|-.+  ++.++. .|.||...+=.-
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~--~l~~~e~~d~ivIAGMGG~   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE--VLKPGEDVDTIVIAGMGGE   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG--G--GGG---EEEEEEE-HH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc--ccCCCCCCCEEEEecCCHH
Confidence            6899999999999999998  589999999999999988653      26778887433  344554 788886554333


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEeeC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCG  205 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~g  205 (291)
                      +             ...++......++....|+++-.    .....+..++...||.-   ++.--.....++|.++.+-
T Consensus        79 l-------------I~~ILe~~~~~~~~~~~lILqP~----~~~~~LR~~L~~~gf~I---~~E~lv~e~~~~YeIi~~~  138 (205)
T PF04816_consen   79 L-------------IIEILEAGPEKLSSAKRLILQPN----THAYELRRWLYENGFEI---IDEDLVEENGRFYEIIVAE  138 (205)
T ss_dssp             H-------------HHHHHHHTGGGGTT--EEEEEES----S-HHHHHHHHHHTTEEE---EEEEEEEETTEEEEEEEEE
T ss_pred             H-------------HHHHHHhhHHHhccCCeEEEeCC----CChHHHHHHHHHCCCEE---EEeEEEeECCEEEEEEEEE
Confidence            3             56788887777777778888752    35667889999999964   2221122345777666654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.95  E-value=7.1e-05  Score=73.84  Aligned_cols=73  Identities=18%  Similarity=0.073  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC----------CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCC-C---CCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG----------HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQG-L---GLRPG  112 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g----------~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~-~---~~~~~  112 (291)
                      ..+|||.|||+|.+...+++..          ..++|+|+++.++..|+.+...     +.+...|.... .   .-..+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            4699999999999998887532          4689999999999998876422     23443432111 0   11135


Q ss_pred             cccEEEECCchh
Q 043626          113 VVDGAISISAVQ  124 (291)
Q Consensus       113 ~fD~Vis~~~l~  124 (291)
                      .||+||+|...-
T Consensus       112 ~fD~IIgNPPy~  123 (524)
T TIGR02987       112 LFDIVITNPPYG  123 (524)
T ss_pred             cccEEEeCCCcc
Confidence            899999995543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.95  E-value=2.9e-05  Score=67.27  Aligned_cols=109  Identities=21%  Similarity=0.267  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC--------------CcceE
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE--------------VEGDL   98 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~--------------~~~~~   98 (291)
                      .....+++.+.+.+   ....+|||||.|......+-. + ...+||++.+...+.|....              ..+.+
T Consensus        29 ~~~~~il~~~~l~~---~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l  105 (205)
T PF08123_consen   29 EFVSKILDELNLTP---DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL  105 (205)
T ss_dssp             HHHHHHHHHTT--T---T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred             HHHHHHHHHhCCCC---CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence            44556778888776   779999999999987766643 5 56999999998877765422              12566


Q ss_pred             EEccCCCCCCCC---CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626           99 LLGDMGQGLGLR---PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus        99 ~~~D~~~~~~~~---~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ..+|+.+. ++.   -...|+|+++...-          +|.  +...+..+...||+|.++|-
T Consensus       106 ~~gdfl~~-~~~~~~~s~AdvVf~Nn~~F----------~~~--l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  106 IHGDFLDP-DFVKDIWSDADVVFVNNTCF----------DPD--LNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             ECS-TTTH-HHHHHHGHC-SEEEE--TTT-----------HH--HHHHHHHHHTTS-TT-EEEE
T ss_pred             eccCcccc-HhHhhhhcCCCEEEEecccc----------CHH--HHHHHHHHHhcCCCCCEEEE
Confidence            77776431 110   13468999876531          121  55666788888999988764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.89  E-value=8.9e-06  Score=67.77  Aligned_cols=68  Identities=24%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             eEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-CCCCc-ccEEEECC
Q 043626           54 LLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-LRPGV-VDGAISIS  121 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~~~~~-fD~Vis~~  121 (291)
                      .|||+.||.|..+..++..+.+|++||+++..++.|+.+..      .++++++|..+.++ +.... ||+|+++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            69999999999999999999999999999999999998752      47999999865433 22222 89999874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.88  E-value=0.00013  Score=63.43  Aligned_cols=95  Identities=21%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC-----CCCCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL-----GLRPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~-----~~~~~~fD~V  117 (291)
                      +.++||||.=||.++..++..   +..|+++|+++...+++.+..      ..+++++++..+.+     ....++||.|
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            568999999999888887755   689999999999999886533      23788888765543     2357899999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.-    +    ++.      .....+..+.++|++||.+++.
T Consensus       154 FvD----a----dK~------nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  154 FVD----A----DKD------NYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEc----c----chH------HHHHHHHHHHhhcccccEEEEe
Confidence            942    2    221      1557889999999999999984

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.84  E-value=0.0003  Score=62.98  Aligned_cols=139  Identities=16%  Similarity=0.162  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCc--hhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC---c--ceEEEc
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSG--LSGETLSEN---GHQWIGLDISQSMLNIALEREV---E--GDLLLG  101 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG--~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~---~--~~~~~~  101 (291)
                      ..+....++++.|.....  -...||||||-=  ..+-.+++.   ...|+-||+++-.+..++....   .  ..++.+
T Consensus        51 ~nR~Fl~RaVr~la~~~G--IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a  128 (267)
T PF04672_consen   51 ANRAFLRRAVRYLAEEAG--IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA  128 (267)
T ss_dssp             HHHHHHHHHHHHHHCTT-----EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred             HHHHHHHHHHHHHHHhcC--cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence            455677788888766532  458999999943  233444443   4899999999999887766432   3  578999


Q ss_pred             cCCCCC-----C-----CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHH
Q 043626          102 DMGQGL-----G-----LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQR  169 (291)
Q Consensus       102 D~~~~~-----~-----~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~  169 (291)
                      |+.+.-     |     +.-...=.++.+.+|||+.+.+.        ...++..+...|.||..|+++....  .+...
T Consensus       129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~d--------p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~  200 (267)
T PF04672_consen  129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDD--------PAGIVARLRDALAPGSYLAISHATDDGAPERA  200 (267)
T ss_dssp             -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCT--------HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHH
T ss_pred             CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccC--------HHHHHHHHHHhCCCCceEEEEecCCCCCHHHH
Confidence            985421     0     11122226777899999977332        5689999999999999999987653  34455


Q ss_pred             HHHHHHHHHcC
Q 043626          170 ELILGAAMRAG  180 (291)
Q Consensus       170 ~~i~~~~~~aG  180 (291)
                      ..+...+.+.|
T Consensus       201 ~~~~~~~~~~~  211 (267)
T PF04672_consen  201 EALEAVYAQAG  211 (267)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHcCC
Confidence            66666666554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.77  E-value=0.00063  Score=59.21  Aligned_cols=145  Identities=19%  Similarity=0.163  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHH----HHHHHHhcCCcceEEE
Q 043626           31 DIQAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQS----MLNIALEREVEGDLLL  100 (291)
Q Consensus        31 ~iq~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~----ml~~a~~~~~~~~~~~  100 (291)
                      ..++.++..++.-+.   +.+   +.+||-+|+.+|....++++-   ...|++|+.|+.    .+.+|+++ .++-.+.
T Consensus        53 P~RSKLaAai~~Gl~~~~ik~---gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl  128 (229)
T PF01269_consen   53 PFRSKLAAAILKGLENIPIKP---GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPIL  128 (229)
T ss_dssp             TTT-HHHHHHHTT-S--S--T---T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEE
T ss_pred             chhhHHHHHHHcCccccCCCC---CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-Cceeeee
Confidence            345566666655443   444   789999999999999999986   369999999994    45555554 4566778


Q ss_pred             ccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-------CChHHHHH
Q 043626          101 GDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-------ESVAQREL  171 (291)
Q Consensus       101 ~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-------~~~~~~~~  171 (291)
                      .|+.....  ..-+.+|+|++.-+ |           |. ...-+..++...||+||.+++.+-.       ....-...
T Consensus       129 ~DAr~P~~Y~~lv~~VDvI~~DVa-Q-----------p~-Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~  195 (229)
T PF01269_consen  129 EDARHPEKYRMLVEMVDVIFQDVA-Q-----------PD-QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAE  195 (229)
T ss_dssp             S-TTSGGGGTTTS--EEEEEEE-S-S-----------TT-HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHH
T ss_pred             ccCCChHHhhcccccccEEEecCC-C-----------hH-HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHH
Confidence            88754321  22458999997522 1           11 1557788888999999999987632       11123344


Q ss_pred             HHHHHHHcCCCCcEEEeC-CCC
Q 043626          172 ILGAAMRAGFAGGVVVDY-PHS  192 (291)
Q Consensus       172 i~~~~~~aGF~~~~~~~~-p~~  192 (291)
                      -.+.+...||..-..++. |+.
T Consensus       196 e~~~L~~~~~~~~e~i~LePy~  217 (229)
T PF01269_consen  196 EVKKLKEEGFKPLEQITLEPYE  217 (229)
T ss_dssp             HHHHHHCTTCEEEEEEE-TTTS
T ss_pred             HHHHHHHcCCChheEeccCCCC
Confidence            455667778987444444 544

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.74  E-value=0.00019  Score=67.79  Aligned_cols=57  Identities=14%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             CCCCCcccEEEECCchhhhccccccC-----------------Cch----------HHHHHHHHHHHHHhccCCcEEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKAS-----------------HEP----------RLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~-----------------~~p----------~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      -|+.++.++++|.+++|||..-....                 ..|          .+++..||+.=++-|.|||++++.
T Consensus       157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~  236 (386)
T PLN02668        157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV  236 (386)
T ss_pred             ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence            37789999999999999997421110                 001          123567777778889999999998


Q ss_pred             EcCC
Q 043626          161 IYPE  164 (291)
Q Consensus       161 ~~~~  164 (291)
                      +.+.
T Consensus       237 ~~Gr  240 (386)
T PLN02668        237 CLGR  240 (386)
T ss_pred             EecC
Confidence            7543

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.74  E-value=2.2e-05  Score=71.45  Aligned_cols=142  Identities=17%  Similarity=0.094  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDM  103 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~  103 (291)
                      +|..-+..+...|...+   +..|||+++++|.-+..+++.-   ..++++|+++.-+.....+..     .+..+..|.
T Consensus        69 vQd~sS~l~~~~L~~~~---~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~  145 (283)
T PF01189_consen   69 VQDESSQLVALALDPQP---GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA  145 (283)
T ss_dssp             EHHHHHHHHHHHHTTTT---TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH
T ss_pred             ecccccccccccccccc---cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc
Confidence            35555555666666555   7799999999999999998862   799999999998888876543     245555665


Q ss_pred             CCCCCC-CCCcccEEEECCc---hhhh-ccccccCC-ch------HHHHHHHHHHHHHhc----cCCcEEEEEEcCCChH
Q 043626          104 GQGLGL-RPGVVDGAISISA---VQWL-CNADKASH-EP------RLRLKAFFGSLYRCL----ARGARAVFQIYPESVA  167 (291)
Q Consensus       104 ~~~~~~-~~~~fD~Vis~~~---l~~l-~~~~~~~~-~p------~~~l~~~l~~l~~~L----kpgG~lv~~~~~~~~~  167 (291)
                      ....+. ....||.|+.-..   ...+ .+++.+.. .+      ...-..+|.++.+.+    +|||+++.++..-.++
T Consensus       146 ~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e  225 (283)
T PF01189_consen  146 RKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE  225 (283)
T ss_dssp             HHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred             ccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence            432221 2335999996421   1111 11111100 00      111267899999999    9999999987653333


Q ss_pred             HHHHHHHHH
Q 043626          168 QRELILGAA  176 (291)
Q Consensus       168 ~~~~i~~~~  176 (291)
                      +-+.+...+
T Consensus       226 ENE~vV~~f  234 (283)
T PF01189_consen  226 ENEEVVEKF  234 (283)
T ss_dssp             GTHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.71  E-value=0.00081  Score=58.28  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCC-CCC-CCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQ-GLG-LRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~-~~~-~~~~~fD~Vis~~~l~~l~~  128 (291)
                      ..++|||||=+......  ..+ ..|+.||+.+.          .-.+...|+.+ .+| -..+.||+|+++.+|.++++
T Consensus        52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~  119 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD  119 (219)
T ss_pred             cceEEeecccCCCCccc--ccCceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence            36999999854432222  223 56999999762          12345555533 122 23679999999999999987


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcE-----EEEEEcC-----CChHHHHHHHHHHHHcCCCC
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGAR-----AVFQIYP-----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~-----lv~~~~~-----~~~~~~~~i~~~~~~aGF~~  183 (291)
                             |..+ -..+..+++.|+|+|.     +++.+..     ......+.+..++...||.-
T Consensus       120 -------p~~R-G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~  176 (219)
T PF11968_consen  120 -------PKQR-GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTR  176 (219)
T ss_pred             -------HHHH-HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEE
Confidence                   4443 4789999999999999     7665421     12234567888899999964

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=3e-05  Score=63.44  Aligned_cols=80  Identities=19%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             eEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc
Q 043626           54 LLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA  132 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~  132 (291)
                      ..+-||||.        .+. .-|+-+|+-.         .+++++++-. ....+|.+++.|+|++.+++.|+..    
T Consensus         5 ~kv~ig~G~--------~r~npgWi~~d~ed---------~~~vdlvc~A-s~e~~F~dns~d~iyaeHvlEHlt~----   62 (185)
T COG4627           5 EKVKIGAGG--------KRVNPGWIITDVED---------RPEVDLVCRA-SNESMFEDNSVDAIYAEHVLEHLTY----   62 (185)
T ss_pred             eEEEEeccc--------cccCCCceeeehhc---------ccccchhhhh-hhhccCCCcchHHHHHHHHHHHHhH----
Confidence            578899997        232 2577777622         2245555433 3567899999999999999999954    


Q ss_pred             CCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          133 SHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                           .....+++.+++.|||||++-+.
T Consensus        63 -----~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          63 -----DEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             -----HHHHHHHHHHHHHhCcCcEEEEE
Confidence                 23678999999999999999984

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.71  E-value=0.00024  Score=68.36  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      -..|+|..+|.|.++.+|.+..   ..|+-+ ..++.|.+..++..-+  +..|..+.+++-+.+||+|.+...+..+.+
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG--~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~  442 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIG--VYHDWCEAFSTYPRTYDLLHADGLFSLYKD  442 (506)
T ss_pred             eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccch--hccchhhccCCCCcchhheehhhhhhhhcc
Confidence            3579999999999999998875   233333 2333444433332211  234666777877999999999988876532


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                              +..+..++-++-++|+|||.+++..   +.+-+..+..++....++. .+.+-
T Consensus       443 --------rC~~~~illEmDRILRP~G~~iiRD---~~~vl~~v~~i~~~lrW~~-~~~d~  491 (506)
T PF03141_consen  443 --------RCEMEDILLEMDRILRPGGWVIIRD---TVDVLEKVKKIAKSLRWEV-RIHDT  491 (506)
T ss_pred             --------cccHHHHHHHhHhhcCCCceEEEec---cHHHHHHHHHHHHhCcceE-EEEec
Confidence                    1337889999999999999999987   5667788888888888876 33333

; GO: 0008168 methyltransferase activity

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.67  E-value=0.00026  Score=65.51  Aligned_cols=144  Identities=23%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC------------CcceEEEccCCCCCCCCCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------------VEGDLLLGDMGQGLGLRPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------------~~~~~~~~D~~~~~~~~~~~fD~V  117 (291)
                      ..+||-+|-|-|.....|.+.-  .+++-||++|.|++.++.+.            +.+.++..|..+.+.-..+.||.|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            4589999999999999998873  79999999999999998542            125778888877665556799999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC-cEEEeCCCCCC
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG-GVVVDYPHSSK  194 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~-~~~~~~p~~~~  194 (291)
                      |..     ++|++..+- .+.--..|...+.+.|+++|.+++|-..  ..++..-.+...++++||.. ..++.-|.-  
T Consensus       370 IVD-----l~DP~tps~-~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTF--  441 (508)
T COG4262         370 IVD-----LPDPSTPSI-GRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTF--  441 (508)
T ss_pred             EEe-----CCCCCCcch-hhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcc--
Confidence            964     334332110 0000146778889999999999998432  12334446778899999874 334444433  


Q ss_pred             CCcEEEEEeeC
Q 043626          195 SRKEFLVLTCG  205 (291)
Q Consensus       195 ~~~~~l~l~~g  205 (291)
                        ..|-+...+
T Consensus       442 --GeWGf~l~~  450 (508)
T COG4262         442 --GEWGFILAA  450 (508)
T ss_pred             --cccceeecc
Confidence              345444443

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00052  Score=66.12  Aligned_cols=116  Identities=19%  Similarity=0.237  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLG  108 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~  108 (291)
                      ..+..-+-+.+.++.   +..+||+.||||.++..+++....|+||+++++.+..|..+..     +++|+++-.+..++
T Consensus       369 evLys~i~e~~~l~~---~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~  445 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPA---DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP  445 (534)
T ss_pred             HHHHHHHHHHhCCCC---CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence            345555667777776   6799999999999999999999999999999999999987653     46888884333222


Q ss_pred             CC--C--CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          109 LR--P--GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       109 ~~--~--~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      ..  +  ++-++|..+       |+.+++-+     ..+++.+.+.-++--.++++..++
T Consensus       446 sl~~~~~~~~~~v~ii-------DPpR~Glh-----~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  446 SLLTPCCDSETLVAII-------DPPRKGLH-----MKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             hhcccCCCCCceEEEE-------CCCccccc-----HHHHHHHHhccCccceEEEEcCHH
Confidence            10  1  233422211       22222211     245555665555666777777544

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.54  E-value=0.00054  Score=63.82  Aligned_cols=111  Identities=21%  Similarity=0.253  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc------------C------CeEEEEeCCHHHHHHHHh---c-------CCc--ceEEEc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN------------G------HQWIGLDISQSMLNIALE---R-------EVE--GDLLLG  101 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~------------g------~~v~gvDis~~ml~~a~~---~-------~~~--~~~~~~  101 (291)
                      +.+|+|+||.+|..+..+...            +      ..|+.-|.-.+=-...-.   .       ...  +.-+.+
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg   96 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG   96 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred             ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence            679999999999988766531            1      367777864421111100   0       111  122334


Q ss_pred             cCCCCCCCCCCcccEEEECCchhhhcccccc-------------C----CchH-----------HHHHHHHHHHHHhccC
Q 043626          102 DMGQGLGLRPGVVDGAISISAVQWLCNADKA-------------S----HEPR-----------LRLKAFFGSLYRCLAR  153 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~-------------~----~~p~-----------~~l~~~l~~l~~~Lkp  153 (291)
                      .+ .+--|+.++.|+++|.+++|||..-...             .    ..|.           +++..||+.=++-|+|
T Consensus        97 SF-y~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   97 SF-YGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             -T-TS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             hh-hhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence            44 2224779999999999999999752110             0    1222           3456777777888999


Q ss_pred             CcEEEEEEcC
Q 043626          154 GARAVFQIYP  163 (291)
Q Consensus       154 gG~lv~~~~~  163 (291)
                      ||++++.+.+
T Consensus       176 GG~mvl~~~g  185 (334)
T PF03492_consen  176 GGRMVLTFLG  185 (334)
T ss_dssp             EEEEEEEEEE
T ss_pred             CcEEEEEEee
Confidence            9999998754

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.52  E-value=0.00048  Score=59.95  Aligned_cols=136  Identities=18%  Similarity=0.148  Sum_probs=85.8

Q ss_pred             CeEEEEcCCCchhHHHHHHc--------CC---eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcc
Q 043626           53 RLLLDIGCGSGLSGETLSEN--------GH---QWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVV  114 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~--------g~---~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~f  114 (291)
                      .+++|+++.+|.++..|++.        +.   .+++||+.+-      .-.+.+--+++|++..-       -|..+..
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M------aPI~GV~qlq~DIT~~stae~Ii~hfggekA  116 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM------APIEGVIQLQGDITSASTAEAIIEHFGGEKA  116 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC------CccCceEEeecccCCHhHHHHHHHHhCCCCc
Confidence            48999999999999999864        12   3999998552      12234566788886532       2556689


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                      |+|||..+..-.--.+...+--..-+...|.....+|+|||.||..++-.+  ...+|..++..- |.. +..--|.+.+
T Consensus       117 dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~--~tslLysql~~f-f~k-v~~~KPrsSR  192 (294)
T KOG1099|consen  117 DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR--DTSLLYSQLRKF-FKK-VTCAKPRSSR  192 (294)
T ss_pred             cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC--chHHHHHHHHHH-hhc-eeeecCCccc
Confidence            999998764311000000011112246677777889999999998776543  334555555443 655 6666777766


Q ss_pred             CCcE
Q 043626          195 SRKE  198 (291)
Q Consensus       195 ~~~~  198 (291)
                      +...
T Consensus       193 ~sSi  196 (294)
T KOG1099|consen  193 NSSI  196 (294)
T ss_pred             cccc
Confidence            5543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=7.3e-05  Score=61.65  Aligned_cols=126  Identities=14%  Similarity=0.130  Sum_probs=86.7

Q ss_pred             CCeEEEEcCC-CchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc--------ceEEEccCCCC-CCCCCCcccEEEE
Q 043626           52 PRLLLDIGCG-SGLSGETLSENG--HQWIGLDISQSMLNIALEREVE--------GDLLLGDMGQG-LGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcG-sG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~--------~~~~~~D~~~~-~~~~~~~fD~Vis  119 (291)
                      +..||++|.| +|..+..++-..  ..|...|-++..++..+.....        +..+..+.... ......+||.|++
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            5689999999 577777777553  7899999999888766553211        11222222111 1223458999999


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      ..++-.=..           -..+++.+..+|+|.|++++ +.|.....++.+.......||.-.+..+|
T Consensus       110 ADClFfdE~-----------h~sLvdtIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~eny  167 (201)
T KOG3201|consen  110 ADCLFFDEH-----------HESLVDTIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEENY  167 (201)
T ss_pred             ccchhHHHH-----------HHHHHHHHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEecccH
Confidence            887743211           45788899999999999554 66888889999999999999865444444

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.00097  Score=58.77  Aligned_cols=146  Identities=22%  Similarity=0.314  Sum_probs=94.9

Q ss_pred             CCCCCCCCcccCCchhhccccccchhHHHHH------HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----C
Q 043626            4 RPELIAPPEIFYDDTEARKYTSSSRIIDIQA------KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----G   73 (291)
Q Consensus         4 ~pe~~~ppe~fy~~~~a~~Y~~~~~~~~iq~------~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g   73 (291)
                      +|....||..||++.-+.-+++..+...+..      .+..++.|+.....   ++.++|+|+|+-.-+..|...    |
T Consensus        28 qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~  104 (321)
T COG4301          28 QTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTEAAILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRG  104 (321)
T ss_pred             cCCcCCCCceeecccHHHHHHHHhccccccCchhHHHHHHHHHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcC
Confidence            4667889999999888877777555444321      22223444444444   789999999999888777653    4


Q ss_pred             --CeEEEEeCCHHHHHHHHhcC----Cc--ceEEEccCCCCCCCCCC--cccEEEECCchhhhccccccCCchHHHHHHH
Q 043626           74 --HQWIGLDISQSMLNIALERE----VE--GDLLLGDMGQGLGLRPG--VVDGAISISAVQWLCNADKASHEPRLRLKAF  143 (291)
Q Consensus        74 --~~v~gvDis~~ml~~a~~~~----~~--~~~~~~D~~~~~~~~~~--~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~  143 (291)
                        ..++.+|+|.+.+....+..    +.  +.-+++|....+...++  .==.++.-+++.-+        +|.. ...|
T Consensus       105 ~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~--------tp~e-~~~F  175 (321)
T COG4301         105 SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNL--------TPGE-CAVF  175 (321)
T ss_pred             CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCC--------ChHH-HHHH
Confidence              68999999999887654432    22  44466666443322222  21223334455433        3443 5689


Q ss_pred             HHHHHHhccCCcEEEEEE
Q 043626          144 FGSLYRCLARGARAVFQI  161 (291)
Q Consensus       144 l~~l~~~LkpgG~lv~~~  161 (291)
                      |..+...|.||-.+++.+
T Consensus       176 l~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         176 LTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             HHHHHhcCCCcceEEEec
Confidence            999999999999999854

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.47  E-value=0.0028  Score=57.41  Aligned_cols=128  Identities=15%  Similarity=0.016  Sum_probs=87.6

Q ss_pred             eEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC-CCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR-PGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|+|+.||.|.++.-+...| ..++++|+++.+++..+.+.... ++.+|+.+..+.. .+.+|+++....-+-+..+.+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~   80 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK   80 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence            68999999999999998888 56788999999999999988754 6677875533322 467999999877665544332


Q ss_pred             --cCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----CChHHHHHHHHHHHHcCCCC
Q 043626          132 --ASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       132 --~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----~~~~~~~~i~~~~~~aGF~~  183 (291)
                        ...++...+-.-+-.+...++|. .+++.--+     ........+...+...||..
T Consensus        81 ~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~  138 (275)
T cd00315          81 RKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV  138 (275)
T ss_pred             cCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence              22345443433333455556776 33333111     12456778899999999975

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0019  Score=55.81  Aligned_cols=112  Identities=15%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~  107 (291)
                      -..+-+++.+.+.. +   +.+||.||-|-|.....+.+.. ..=+-|+..+..+...+....    ++.++.+-..+-+
T Consensus        87 EtpiMha~A~ai~t-k---ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl  162 (271)
T KOG1709|consen   87 ETPIMHALAEAIST-K---GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL  162 (271)
T ss_pred             hhHHHHHHHHHHhh-C---CceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence            34444555555553 3   7799999999999998888775 334457888998888887543    2444444332222


Q ss_pred             -CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          108 -GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       108 -~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                       .++++.||+|+-..--.+..+           +..|.+.+.++|||+|++-+
T Consensus       163 ~~L~d~~FDGI~yDTy~e~yEd-----------l~~~hqh~~rLLkP~gv~Sy  204 (271)
T KOG1709|consen  163 NTLPDKHFDGIYYDTYSELYED-----------LRHFHQHVVRLLKPEGVFSY  204 (271)
T ss_pred             ccccccCcceeEeechhhHHHH-----------HHHHHHHHhhhcCCCceEEE
Confidence             244788999996433244333           78899999999999997654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.45  E-value=0.00046  Score=58.72  Aligned_cols=98  Identities=20%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||+|+|+|..+...+..| ..|+..|+.+..+.....|.    ..+.++..|+.   . .+..||+++...++.--
T Consensus        80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~---g-~~~~~Dl~LagDlfy~~  155 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI---G-SPPAFDLLLAGDLFYNH  155 (218)
T ss_pred             cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecccc---C-CCcceeEEEeeceecCc
Confidence            5799999999999999999998 78999999987666554433    34677777762   2 57899999987665311


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      .          . -.+++. +...|...|..++.+-|..
T Consensus       156 ~----------~-a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         156 T----------E-ADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             h----------H-HHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            1          0 234555 5555566666666555543

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.41  E-value=0.00031  Score=60.63  Aligned_cols=127  Identities=17%  Similarity=0.090  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc----------
Q 043626           30 IDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE----------   95 (291)
Q Consensus        30 ~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~----------   95 (291)
                      ..+..++.++++.++.-..   +.++.|-+||+|.+.-.+.-.    -..++|-||++++|+.|++|..-          
T Consensus        33 VRLAsEi~qR~l~~l~~~~---p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~  109 (246)
T PF11599_consen   33 VRLASEIFQRALHYLEGKG---PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARR  109 (246)
T ss_dssp             HHHHHHHHHHHHCTSSS-S----EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCC---CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHH
Confidence            3456688888888876544   789999999999977666532    26899999999999999886420          


Q ss_pred             -------------------------------------ceEEEccCCCCCC----CCCCcccEEEECCchhhhccccccCC
Q 043626           96 -------------------------------------GDLLLGDMGQGLG----LRPGVVDGAISISAVQWLCNADKASH  134 (291)
Q Consensus        96 -------------------------------------~~~~~~D~~~~~~----~~~~~fD~Vis~~~l~~l~~~~~~~~  134 (291)
                                                           ..+.+.|+.+.-+    -.....|+||..-....+.+-.-  .
T Consensus       110 ~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g--~  187 (246)
T PF11599_consen  110 EELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG--E  187 (246)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC--C
Confidence                                                 2467777755211    11234699998633332222111  1


Q ss_pred             chHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          135 EPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       135 ~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .+..-...+|..++.+|-.+++++++.
T Consensus       188 ~~~~p~~~ml~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  188 GSGGPVAQMLNSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             --HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             CCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence            233447899999999996666666643

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.37  E-value=0.00063  Score=55.30  Aligned_cols=43  Identities=23%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             CCeEEEEcCCCchhHHHHHH-----c-CCeEEEEeCCHHHHHHHHhcCC
Q 043626           52 PRLLLDIGCGSGLSGETLSE-----N-GHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~-----~-g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      ...|+|+|||.|.++..|+.     . +..|+|||.++..++.+..+..
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence            67999999999999999998     3 5899999999999888877643

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.36  E-value=0.00055  Score=57.94  Aligned_cols=95  Identities=17%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           53 RLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      ..+.|+|+|||.++...++....|++++.+|...+.|.++.     .+++++.+|+ ....|  ...|+|+|-+.=..|-
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA-~~y~f--e~ADvvicEmlDTaLi  110 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA-RDYDF--ENADVVICEMLDTALI  110 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc-ccccc--cccceeHHHHhhHHhh
Confidence            48999999999999999988899999999999999999984     3478899998 33555  5679999864333332


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +      ++   ...++..+...|+..+.++=
T Consensus       111 ~------E~---qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         111 E------EK---QVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             c------cc---ccHHHHHHHHHhhcCCcccc
Confidence            2      12   23456666778888887775

>PRK10742 putative methyltransferase; Provisional

Probab=97.31  E-value=0.00059  Score=60.53  Aligned_cols=85  Identities=11%  Similarity=-0.030  Sum_probs=64.1

Q ss_pred             HHHHHHhCCCCCCCCC--eEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC--------------CcceEEEc
Q 043626           38 ERALELLALPDDGVPR--LLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE--------------VEGDLLLG  101 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~--~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~--------------~~~~~~~~  101 (291)
                      +.+++.+.++.   +.  +|||+-+|+|..+..++..|..|+++|-++.+....++..              ..+.++.+
T Consensus        76 ~~l~kAvglk~---g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKG---DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCC---CCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            56677777766   44  8999999999999999999989999999997765554322              12566777


Q ss_pred             cCCCCCCCCCCcccEEEECCchhh
Q 043626          102 DMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      |....+.-...+||+|+.-..+.|
T Consensus       153 da~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        153 SSLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             cHHHHHhhCCCCCcEEEECCCCCC
Confidence            765544433458999999877766

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.29  E-value=0.0058  Score=53.06  Aligned_cols=135  Identities=13%  Similarity=0.071  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---ceEEEccCCCCC-CCCCC-cccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---GDLLLGDMGQGL-GLRPG-VVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---~~~~~~D~~~~~-~~~~~-~fD~Vis~~~l~  124 (291)
                      +..+.||||--+.+...|.+.+  ..+++.|+++.-++.|..+...   .+.+..+.++++ ++..+ .+|.|+...+=.
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG   96 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG   96 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence            3459999999999999999987  7899999999999999887643   234444444444 44444 789888654443


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEee
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTC  204 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~  204 (291)
                      .+             ...++.+-..-|+.=-+++++-  .  .+...+.+++...+|.-   +.-.-..+..++|-++.+
T Consensus        97 ~l-------------I~~ILee~~~~l~~~~rlILQP--n--~~~~~LR~~L~~~~~~I---~~E~ileE~~kiYEIlv~  156 (226)
T COG2384          97 TL-------------IREILEEGKEKLKGVERLILQP--N--IHTYELREWLSANSYEI---KAETILEEDGKIYEILVV  156 (226)
T ss_pred             HH-------------HHHHHHHhhhhhcCcceEEECC--C--CCHHHHHHHHHhCCcee---eeeeeecccCeEEEEEEE
Confidence            33             6678888888877555677652  2  35567888899999964   222223345677866665


Q ss_pred             CC
Q 043626          205 GP  206 (291)
Q Consensus       205 g~  206 (291)
                      -.
T Consensus       157 e~  158 (226)
T COG2384         157 EK  158 (226)
T ss_pred             ec
Confidence            43

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0033  Score=57.24  Aligned_cols=121  Identities=20%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHH-------hcCC--------------------------c---
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIAL-------EREV--------------------------E---   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~-------~~~~--------------------------~---   95 (291)
                      ...||--|||.|.++..|+..|..+-|=+.|--|+-...       ....                          .   
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            458999999999999999999988888898887764321       1000                          0   


Q ss_pred             -------ceE--EEccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE----
Q 043626           96 -------GDL--LLGDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ----  160 (291)
Q Consensus        96 -------~~~--~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~----  160 (291)
                             ..|  ..+|+.+-.+  -..++||+|+..+.+.--.|           +..++..++++|+|||..+=-    
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N-----------ileYi~tI~~iLk~GGvWiNlGPLl  299 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN-----------ILEYIDTIYKILKPGGVWINLGPLL  299 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH-----------HHHHHHHHHHhccCCcEEEecccee
Confidence                   011  2234433222  12357999998766653333           778999999999999987741    


Q ss_pred             --EcCCC--------hHHHHHHHHHHHHcCCCC
Q 043626          161 --IYPES--------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       161 --~~~~~--------~~~~~~i~~~~~~aGF~~  183 (291)
                        |-+..        ....+.+...+...||..
T Consensus       300 YHF~d~~g~~~~~siEls~edl~~v~~~~GF~~  332 (369)
T KOG2798|consen  300 YHFEDTHGVENEMSIELSLEDLKRVASHRGFEV  332 (369)
T ss_pred             eeccCCCCCcccccccccHHHHHHHHHhcCcEE
Confidence              11111        124678888999999974

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.05  E-value=0.0036  Score=57.14  Aligned_cols=91  Identities=21%  Similarity=0.143  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhCCCCCC--CCCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCC-------cceEEEcc-
Q 043626           35 KLSERALELLALPDDG--VPRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREV-------EGDLLLGD-  102 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~--~~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D-  102 (291)
                      .....+.++|....+.  ..-++||||||...+=-.|..  .+..++|.||++..++.|+++..       .+.++... 
T Consensus        84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~  163 (299)
T PF05971_consen   84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN  163 (299)
T ss_dssp             HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred             HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence            4455666666554321  135899999998765444432  37999999999999999987542       25555442 


Q ss_pred             ---CCCCCCCCCCcccEEEECCchhh
Q 043626          103 ---MGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus       103 ---~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                         +...+-...+.||+++|+..++-
T Consensus       164 ~~~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  164 PDNIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             T-SSTTTSTT--S-EEEEEE-----S
T ss_pred             ccccchhhhcccceeeEEecCCcccc
Confidence               22222233468999999977753

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.04  E-value=0.0066  Score=57.34  Aligned_cols=126  Identities=12%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCC---CCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLG---LRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~---~~~~~fD~Vis~  120 (291)
                      +-+|||+++-+|.-+.+++..  + ..|++.|.+..-+.....+...     ..+...|..+ +|   | +++||-|+.-
T Consensus       242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~e-f~~~~~-~~~fDRVLLD  319 (460)
T KOG1122|consen  242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGRE-FPEKEF-PGSFDRVLLD  319 (460)
T ss_pred             CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccc-cccccc-Ccccceeeec
Confidence            779999999999988888865  3 7999999999888877776532     3445556532 22   3 3489999853


Q ss_pred             Cchhh--h--ccccccCCchHHH-------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc
Q 043626          121 SAVQW--L--CNADKASHEPRLR-------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA  179 (291)
Q Consensus       121 ~~l~~--l--~~~~~~~~~p~~~-------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a  179 (291)
                      ..-.-  +  .+...+.....+.       .+.+|.++..++++||+||-++..-..++-+.+..++.+.
T Consensus       320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K  389 (460)
T KOG1122|consen  320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK  389 (460)
T ss_pred             CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHh
Confidence            22111  0  0001111110111       2678889999999999999988776666656666665543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.03  E-value=0.012  Score=52.29  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC----------cceEEEccCCCCC--CCCCCc-ccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV----------EGDLLLGDMGQGL--GLRPGV-VDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~~~~--~~~~~~-fD~V  117 (291)
                      +..||++|+|+|..+...+.. +..|+..|+...+......+..          .+.+...+.+...  .+.... ||+|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            568999999999999988885 5888888886654433222111          1222222322222  233344 9999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ++.-++.....           ...++..++..|..++.+.+. |+-...+...+...+..--|..
T Consensus       167 lasDvvy~~~~-----------~e~Lv~tla~ll~~~~~i~l~-~~lr~~~~~~~~~~~~~~~~~~  220 (248)
T KOG2793|consen  167 LASDVVYEEES-----------FEGLVKTLAFLLAKDGTIFLA-YPLRRDAAWEIEVLLFKKDLKI  220 (248)
T ss_pred             EEeeeeecCCc-----------chhHHHHHHHHHhcCCeEEEE-EecccchHHHHHHHHhhhhhcc
Confidence            99988865433           557788888999999944444 4433333333444444433443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.00  E-value=0.0022  Score=55.29  Aligned_cols=55  Identities=29%  Similarity=0.454  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE   91 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~   91 (291)
                      ...+.++++.....+    +..|||.-||||..+.+..+.|..++|+|+++...++|.+
T Consensus       177 P~~l~~~lI~~~t~~----gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTNP----GDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS-T----T-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhcc----ceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            347888888887544    5699999999999999999999999999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.93  E-value=0.0029  Score=54.23  Aligned_cols=107  Identities=17%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------------cceEEEccCCCCCC--CCCCccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------------EGDLLLGDMGQGLG--LRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------------~~~~~~~D~~~~~~--~~~~~fD  115 (291)
                      .-.+.|||||-|.+...|+...  .-++|++|--..-+..+++..            ++.++..+....+|  |..+..+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            3479999999999999999986  789999998877777766532            23444444322232  2222222


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      -.+..+.-.|+..   ..|.-.-.....+....-+|+.||.++..+
T Consensus       141 kmff~fpdpHfk~---~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  141 KMFFLFPDPHFKA---RKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cceeecCChhHhh---hhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            2222211122211   001111112467788889999999998776

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.075  Score=45.76  Aligned_cols=150  Identities=20%  Similarity=0.189  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHH----HHHHhcCCcceEEEccC
Q 043626           33 QAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSML----NIALEREVEGDLLLGDM  103 (291)
Q Consensus        33 q~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml----~~a~~~~~~~~~~~~D~  103 (291)
                      .+.++..++.=|.   +.+   +.+||-+|+.+|....++++- + ..++||+.|+.+.    ..|.++ .++-.++.|+
T Consensus        58 RSKLaAaIl~Gl~~~pi~~---g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA  133 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKE---GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDA  133 (231)
T ss_pred             hhHHHHHHHcCcccCCcCC---CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeeccc
Confidence            4466666665554   333   789999999999999999987 3 7899999999654    444443 4566778887


Q ss_pred             CCCC--CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC------CCh-HHHHHHHH
Q 043626          104 GQGL--GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP------ESV-AQRELILG  174 (291)
Q Consensus       104 ~~~~--~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~------~~~-~~~~~i~~  174 (291)
                      ....  .+--+..|+|+..- -|           |. +..-+..++...|++||.+++.+-.      ..+ .-...-..
T Consensus       134 ~~P~~Y~~~Ve~VDviy~DV-AQ-----------p~-Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~  200 (231)
T COG1889         134 RKPEKYRHLVEKVDVIYQDV-AQ-----------PN-QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE  200 (231)
T ss_pred             CCcHHhhhhcccccEEEEec-CC-----------ch-HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence            4322  12235689888541 11           21 2456778889999999977775321      122 23344566


Q ss_pred             HHHHcCCCCcEEEeC-CCCCCCCcEEEEE
Q 043626          175 AAMRAGFAGGVVVDY-PHSSKSRKEFLVL  202 (291)
Q Consensus       175 ~~~~aGF~~~~~~~~-p~~~~~~~~~l~l  202 (291)
                      .++..||+.-.+++. |..   +.+++++
T Consensus       201 kL~~~~f~i~e~~~LePye---~DH~~i~  226 (231)
T COG1889         201 KLEEGGFEILEVVDLEPYE---KDHALIV  226 (231)
T ss_pred             HHHhcCceeeEEeccCCcc---cceEEEE
Confidence            788889987555554 433   3445444

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.90  E-value=0.012  Score=54.73  Aligned_cols=130  Identities=22%  Similarity=0.167  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--CCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~  128 (291)
                      ...++|+-||.|.+..-+...| ..+.++|+++..++.-..+.....++..|+.+...  +....+|+++..+.-|.+..
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~   82 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI   82 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence            4689999999999999999988 56789999999999999998877888888854332  11228999999888877665


Q ss_pred             cccc--CCchHHHHHHHHHHHHHhccCCcEEEEEEcC----CChHHHHHHHHHHHHcCCC
Q 043626          129 ADKA--SHEPRLRLKAFFGSLYRCLARGARAVFQIYP----ESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       129 ~~~~--~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~----~~~~~~~~i~~~~~~aGF~  182 (291)
                      +.+.  ..+|+..|---+..+...++| -.+++.--+    ......+.|...|.+.||.
T Consensus        83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG  141 (328)
T ss_pred             cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence            4333  456666665556677778888 556664222    1334788899999999996

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.90  E-value=0.00018  Score=55.25  Aligned_cols=94  Identities=21%  Similarity=0.123  Sum_probs=40.6

Q ss_pred             EEEcCCCchhHHHHHHc---C--CeEEEEeCCH---HHHHHHHhc-C-CcceEEEccCCCCCC-CCCCcccEEEECCchh
Q 043626           56 LDIGCGSGLSGETLSEN---G--HQWIGLDISQ---SMLNIALER-E-VEGDLLLGDMGQGLG-LRPGVVDGAISISAVQ  124 (291)
Q Consensus        56 LDiGcGsG~~~~~L~~~---g--~~v~gvDis~---~ml~~a~~~-~-~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~  124 (291)
                      ||||+..|.++..+++.   +  .+++++|..+   ...+..++. . ..+.++.++..+.++ +..++||+|+.-..- 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H-   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH-   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence            68999999999888864   2  3899999999   444444331 1 237888888744332 224789999965321 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                                 ........+..+...|+|||.+++..
T Consensus        80 -----------~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 -----------SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ------------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             -----------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                       11225677889999999999998853

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.89  E-value=0.0015  Score=52.52  Aligned_cols=51  Identities=20%  Similarity=0.273  Sum_probs=41.1

Q ss_pred             eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      .|||||||.|.++..++..+  .+++++|+++.+++.++++..     ++.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence            48999999999999999886  379999999999998887632     3556655553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11524 putative methyltransferase; Provisional

Probab=96.89  E-value=0.0028  Score=57.62  Aligned_cols=58  Identities=24%  Similarity=0.374  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      ..+.++++.+...+    +..|||--||||..+.+..+.|-.++|+|+++..++.|.+++..
T Consensus       195 ~~L~erlI~~~S~~----GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNP----GDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCC----CCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            46778888876644    67999999999999999999999999999999999999998643

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.89  E-value=0.0036  Score=57.41  Aligned_cols=83  Identities=22%  Similarity=0.249  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCC--
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQG--  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~--  106 (291)
                      -|.+.+++.|...+   +..++|.-||.|..+..|++.  ...++|+|.++.+++.++++..    .+.+++++..+.  
T Consensus         7 Vll~Evl~~L~~~~---ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         7 VLLDEVVEGLNIKP---DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE   83 (305)
T ss_pred             hhHHHHHHhcCcCC---CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence            57788899998765   679999999999999999876  3899999999999999987653    355666655331  


Q ss_pred             -CC-CCCCcccEEEEC
Q 043626          107 -LG-LRPGVVDGAISI  120 (291)
Q Consensus       107 -~~-~~~~~fD~Vis~  120 (291)
                       +. ....++|+|+..
T Consensus        84 ~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        84 HLDELLVTKIDGILVD   99 (305)
T ss_pred             HHHhcCCCcccEEEEe
Confidence             11 122457777754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.87  E-value=0.007  Score=51.65  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             HHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHH----------HHHHHHhc-CCcceEEEccCCCC
Q 043626           41 LELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQS----------MLNIALER-EVEGDLLLGDMGQG  106 (291)
Q Consensus        41 lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~----------ml~~a~~~-~~~~~~~~~D~~~~  106 (291)
                      |....+++   +++|+|+-.|.|.++..++.. |  ..|+++=..+.          +-..+++. ..+...+..++. .
T Consensus        41 L~FaGlkp---g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~-A  116 (238)
T COG4798          41 LAFAGLKP---GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV-A  116 (238)
T ss_pred             eEEeccCC---CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc-c
Confidence            33445555   789999999999999999975 2  46666644332          22222221 122344444432 2


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC---CCh---------HHHHHHHH
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP---ESV---------AQRELILG  174 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~---~~~---------~~~~~i~~  174 (291)
                      ++ .++..|++..++..|-+.+.+  .|  ......+...+++.|||||.+++..+-   ...         -....+..
T Consensus       117 ~~-~pq~~d~~~~~~~yhdmh~k~--i~--~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a  191 (238)
T COG4798         117 LG-APQKLDLVPTAQNYHDMHNKN--IH--PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIA  191 (238)
T ss_pred             cC-CCCcccccccchhhhhhhccc--cC--cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHH
Confidence            23 567788888766655443211  11  233678899999999999999985431   111         12345667


Q ss_pred             HHHHcCCCC
Q 043626          175 AAMRAGFAG  183 (291)
Q Consensus       175 ~~~~aGF~~  183 (291)
                      ..+.+||.-
T Consensus       192 ~veaaGFkl  200 (238)
T COG4798         192 EVEAAGFKL  200 (238)
T ss_pred             HHHhhccee
Confidence            778899974

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.86  E-value=0.0016  Score=50.18  Aligned_cols=31  Identities=32%  Similarity=0.534  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDIS   82 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis   82 (291)
                      ....+|||||+|.+...|...|+.=+|+|.-
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            5678999999999999999999999999973

; GO: 0008168 methyltransferase activity

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.80  E-value=0.016  Score=52.37  Aligned_cols=99  Identities=20%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCchhH-HHHHHc---CCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSG-ETLSEN---GHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~-~~L~~~---g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|+=||||+=-++ ..|+..   +..++++|+++.+++.+++-..       .+.|+.+|.. ..+..-..||+|+..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~-~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVL-DVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GG-GG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchh-ccccccccCCEEEEh
Confidence            569999999986544 455543   3679999999999999976332       3688888873 344444689999865


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ....--       .+|   -..+|..+.+.++||+.+++..
T Consensus       200 alVg~~-------~e~---K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  200 ALVGMD-------AEP---KEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             TT-S-----------S---HHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hhcccc-------cch---HHHHHHHHHhhCCCCcEEEEec
Confidence            444211       112   4689999999999999999973

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.72  E-value=0.011  Score=54.88  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=67.5

Q ss_pred             HHHhCCCCCCCCCeEEEEcCC-CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEE
Q 043626           41 LELLALPDDGVPRLLLDIGCG-SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAI  118 (291)
Q Consensus        41 lelL~~~~~~~~~~VLDiGcG-sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vi  118 (291)
                      +......+   +..|+=+|+| .|..+..+++ .|.+|+++|+|++-++.|++...+.-+.-.|- +...--.+.||+||
T Consensus       159 lk~~~~~p---G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~-~~~~~~~~~~d~ii  234 (339)
T COG1064         159 LKKANVKP---GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDS-DALEAVKEIADAII  234 (339)
T ss_pred             hhhcCCCC---CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc-hhhHHhHhhCcEEE
Confidence            33344554   6788888887 3456677776 68999999999999999988765422221111 11211123499999


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .... .                 ..+....+.|++||++++.=.+
T Consensus       235 ~tv~-~-----------------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         235 DTVG-P-----------------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ECCC-h-----------------hhHHHHHHHHhcCCEEEEECCC
Confidence            7644 3                 3466778899999999986544

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.71  E-value=0.0031  Score=55.58  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=53.1

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh---cC-----------CcceEEEccC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE---RE-----------VEGDLLLGDM  103 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~---~~-----------~~~~~~~~D~  103 (291)
                      +.+++...+.+. ...+|||.-||-|.-+..++..|..|++++-|+-+..+...   +.           ..++++.+|.
T Consensus        63 ~~l~kA~Glk~~-~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   63 DPLAKAVGLKPG-MRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             SHHHHHTT-BTT-B---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             cHHHHHhCCCCC-CCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            456666666652 12499999999999999999899999999999976544432   11           1268999998


Q ss_pred             CCCCCCCCCcccEEEECCchhh
Q 043626          104 GQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus       104 ~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      .+.+..+..+||+|+.-..+.+
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S---
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            7777766789999999877765

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.70  E-value=0.021  Score=52.74  Aligned_cols=127  Identities=12%  Similarity=0.006  Sum_probs=83.4

Q ss_pred             EEEEcCCCchhHHHHHHcCCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc-
Q 043626           55 LLDIGCGSGLSGETLSENGHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA-  132 (291)
Q Consensus        55 VLDiGcGsG~~~~~L~~~g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~-  132 (291)
                      |+|+-||.|.+..-|...|.+ +.++|+++..++..+.+++. .++.+|+.+..+..-..+|+++....-|-+..+.+. 
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~   79 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK   79 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence            689999999999999988855 56799999999999988876 566778754222122368999987666655433221 


Q ss_pred             -CCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----CChHHHHHHHHHHHHcCCCC
Q 043626          133 -SHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       133 -~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----~~~~~~~~i~~~~~~aGF~~  183 (291)
                       ..+++..+-.-+-.+...++|. .+++.--+     ........+...+...||..
T Consensus        80 ~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v  135 (315)
T TIGR00675        80 GFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV  135 (315)
T ss_pred             CCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE
Confidence             2344443333333444556775 34443111     12345678888899999975

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.66  E-value=0.0014  Score=50.72  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=34.4

Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .||+|+|.++.-|+--     ......+..+|..+++.|+|||.+++.-
T Consensus         1 ~yDvilclSVtkWIHL-----n~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHL-----NWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHH-----HHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEe-----cCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            4899999999887631     2344558999999999999999999964

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.59  E-value=0.025  Score=55.47  Aligned_cols=124  Identities=20%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhcCC--cc----eEEEcc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALEREV--EG----DLLLGD  102 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~~~--~~----~~~~~D  102 (291)
                      .+++-++++|...+   ..+|.|-.||||.+.....+.    .  ..++|.|+++.+...|+.+.-  .+    ....+|
T Consensus       173 ~v~~liv~~l~~~~---~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d  249 (489)
T COG0286         173 EVSELIVELLDPEP---RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD  249 (489)
T ss_pred             HHHHHHHHHcCCCC---CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence            56777788877633   569999999999866555432    1  569999999999999987642  22    223333


Q ss_pred             CCCCCC----CCCCcccEEEECCchh---hhcccc-----------ccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          103 MGQGLG----LRPGVVDGAISISAVQ---WLCNAD-----------KASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       103 ~~~~~~----~~~~~fD~Vis~~~l~---~l~~~~-----------~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      -.....    ...+.||.|+++..+.   |.....           .....+......|+..+...|+|||++.+.+
T Consensus       250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            211111    2346799999986553   433210           0011122223789999999999998777654

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.58  E-value=0.0042  Score=53.90  Aligned_cols=69  Identities=17%  Similarity=0.152  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC---CCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL---GLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~---~~~~~~fD~Vis~  120 (291)
                      ...|+|.-||.|..+...+..+..|++|||++.-|..|+.+..      .+.|+++|+....   .|...-+|+|...
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            4489999999999999999999999999999999999998864      3789999974421   2323335565544

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.51  E-value=0.014  Score=51.85  Aligned_cols=74  Identities=23%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|+|||||---++..+...  +..++|+||+..+++....-.    ...++...|+....|  ..+.|+++..=+++-
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~--~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP--KEPADLALLLKTLPC  183 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT--TSEESEEEEET-HHH
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC--CCCcchhhHHHHHHH
Confidence            679999999998888877765  379999999999998876542    456778888855433  678999998877776


Q ss_pred             hc
Q 043626          126 LC  127 (291)
Q Consensus       126 l~  127 (291)
                      +.
T Consensus       184 le  185 (251)
T PF07091_consen  184 LE  185 (251)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.47  E-value=0.25  Score=43.67  Aligned_cols=120  Identities=14%  Similarity=0.071  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchhHH-HHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCC-CCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGE-TLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLR-PGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~-~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~l~~  125 (291)
                      +..||=||=.--.+.. .|......|+.+||++.+++...+..    ..+..+..|+...+|.. .+.||++++....  
T Consensus        45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy--  122 (243)
T PF01861_consen   45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY--  122 (243)
T ss_dssp             T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S--
T ss_pred             CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC--
Confidence            6799999965544332 22233589999999999998765433    34788999998777643 5899999986321  


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCc-EEEEEEcCCC--hHHHHHHHHHHHHcCCCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGA-RAVFQIYPES--VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG-~lv~~~~~~~--~~~~~~i~~~~~~aGF~~  183 (291)
                                ....+.-|+.....+|+.-| ..+|.+....  ......+.+.+.+.||.-
T Consensus       123 ----------T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i  173 (243)
T PF01861_consen  123 ----------TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI  173 (243)
T ss_dssp             ----------SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred             ----------CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence                      11337889999999999766 6666665433  334456788888888863

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.35  E-value=0.042  Score=51.25  Aligned_cols=129  Identities=16%  Similarity=0.124  Sum_probs=79.1

Q ss_pred             CCCCCCCCCeEEEEcCCCchhHHHHHHcCC------eEEEEeCCHHHHHHHHhcC---Cc--ceEEEccCCCC--C----
Q 043626           45 ALPDDGVPRLLLDIGCGSGLSGETLSENGH------QWIGLDISQSMLNIALERE---VE--GDLLLGDMGQG--L----  107 (291)
Q Consensus        45 ~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~------~v~gvDis~~ml~~a~~~~---~~--~~~~~~D~~~~--~----  107 (291)
                      .+.+   +.+|||+++-+|.-+..|.+..+      .+++=|+++.-+.......   +.  ..+...|+...  .    
T Consensus       152 ~v~p---~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  152 GVKP---GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             ccCC---CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence            4455   78999999999999988888754      8999999997666555433   22  22233333111  1    


Q ss_pred             --CCCCCcccEEEECCchhhhccccccC----------------CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHH
Q 043626          108 --GLRPGVVDGAISISAVQWLCNADKAS----------------HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQR  169 (291)
Q Consensus       108 --~~~~~~fD~Vis~~~l~~l~~~~~~~----------------~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  169 (291)
                        +.....||-|++--.    |..|...                .+=+.-...++.+-.++||+||.+|-++..-++-+-
T Consensus       229 ~~~~~~~~fDrVLvDVP----CS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN  304 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVP----CSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN  304 (375)
T ss_pred             CchhhhhhcceeEEecc----cCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence              123356899886411    2221100                011111256788899999999999999887666554


Q ss_pred             HHHHH-HHHHcC
Q 043626          170 ELILG-AAMRAG  180 (291)
Q Consensus       170 ~~i~~-~~~~aG  180 (291)
                      +.+.+ ++...|
T Consensus       305 EaVV~~~L~~~~  316 (375)
T KOG2198|consen  305 EAVVQEALQKVG  316 (375)
T ss_pred             HHHHHHHHHHhc
Confidence            44444 444443

>PRK13699 putative methylase; Provisional

Probab=96.33  E-value=0.014  Score=51.47  Aligned_cols=57  Identities=19%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      .+.+++++....+    +..|||--||||..+.+..+.|..++|+|+++...+.+.++...
T Consensus       151 ~l~~~~i~~~s~~----g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        151 TSLQPLIESFTHP----NAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHhCCC----CCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            5667777665543    67999999999999999999999999999999999999888654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.27  E-value=0.065  Score=54.49  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--------------CCeEEEEeCCH---HHHHHHHhcCC--------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--------------GHQWIGLDISQ---SMLNIALEREV--------------------   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--------------g~~v~gvDis~---~ml~~a~~~~~--------------------   94 (291)
                      ..+|||+|=|+|.....+.+.              -.+++.++..+   ..+..+....+                    
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            579999999999866554421              14899999533   33333322111                    


Q ss_pred             ----------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626           95 ----------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus        95 ----------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                                ..+++.+|+.+.++--...||+++.-        +-....||.-=-..+|..++++++|||.++-..   
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD--------~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLD--------GFAPAKNPDMWSPNLFNALARLARPGATLATFT---  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeC--------CCCCccChhhccHHHHHHHHHHhCCCCEEEEee---
Confidence                      13456677654444223568888853        222223444334789999999999999887432   


Q ss_pred             ChHHHHHHHHHHHHcCCCC
Q 043626          165 SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       165 ~~~~~~~i~~~~~~aGF~~  183 (291)
                         ....+...|..+||..
T Consensus       207 ---~a~~vr~~l~~~GF~v  222 (662)
T PRK01747        207 ---SAGFVRRGLQEAGFTV  222 (662)
T ss_pred             ---hHHHHHHHHHHcCCee
Confidence               4456777888999964

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.27  E-value=0.011  Score=54.50  Aligned_cols=124  Identities=19%  Similarity=0.163  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-------c-------ceEEE
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-------E-------GDLLL  100 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-------~-------~~~~~  100 (291)
                      ++.--..+.....+   +..|+|--.|||.+....+..|..|+|.||+-.|+...+....       +       .+++.
T Consensus       195 eLSli~AN~Amv~p---GdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~  271 (421)
T KOG2671|consen  195 ELSLIMANQAMVKP---GDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT  271 (421)
T ss_pred             hHHHHHhhhhccCC---CCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence            44333334434444   7899999999999999999999999999999988874322111       1       47788


Q ss_pred             ccCCCCCCCC-CCcccEEEECCchhhhc---------------cccccCCchHHH-------HHHHHHHHHHhccCCcEE
Q 043626          101 GDMGQGLGLR-PGVVDGAISISAVQWLC---------------NADKASHEPRLR-------LKAFFGSLYRCLARGARA  157 (291)
Q Consensus       101 ~D~~~~~~~~-~~~fD~Vis~~~l~~l~---------------~~~~~~~~p~~~-------l~~~l~~l~~~LkpgG~l  157 (291)
                      +|... -++. ...||.|||.....-=.               .+....|-|...       +...+.-.++.|.-||++
T Consensus       272 ~D~sn-~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrl  350 (421)
T KOG2671|consen  272 ADFSN-PPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRL  350 (421)
T ss_pred             ecccC-cchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceE
Confidence            88744 3333 45899999874332100               011112222222       255667778999999999


Q ss_pred             EEEEc
Q 043626          158 VFQIY  162 (291)
Q Consensus       158 v~~~~  162 (291)
                      ++.+.
T Consensus       351 v~w~p  355 (421)
T KOG2671|consen  351 VFWLP  355 (421)
T ss_pred             EEecC
Confidence            99874

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.04  E-value=0.036  Score=50.60  Aligned_cols=126  Identities=18%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             eEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC--CCCCCcccEEEECCchhhhcccc
Q 043626           54 LLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL--GLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      +++|+-||.|.+..-|...| ..+.++|+++.+.+.-+.++.  ....+|+.+..  .++. .+|+++....-|-+..+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag   78 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG   78 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence            68999999999999999998 678999999999999999988  78888985422  2333 599999876666544332


Q ss_pred             --ccCCchHHHHHHHHHHHHHhccCCcEEEEE-EcC----CChHHHHHHHHHHHHcCCCC
Q 043626          131 --KASHEPRLRLKAFFGSLYRCLARGARAVFQ-IYP----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 --~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~-~~~----~~~~~~~~i~~~~~~aGF~~  183 (291)
                        +...+++..+-.-+-.+...++|.- +++. +..    .+......+...+...||.-
T Consensus        79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v  137 (335)
T PF00145_consen   79 KRKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNV  137 (335)
T ss_dssp             THHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE
T ss_pred             cccccccccchhhHHHHHHHhhccceE-EEecccceeeccccccccccccccccccceee
Confidence              2223444434333445556678864 4443 221    12356788999999999864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.74  E-value=0.077  Score=49.32  Aligned_cols=103  Identities=20%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcc-----eEEEccCCC-CCCCC-CCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEG-----DLLLGDMGQ-GLGLR-PGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~-----~~~~~D~~~-~~~~~-~~~fD~Vis~~  121 (291)
                      +.+|||+|.|+|.-.-++-...   ..++.++.|+..-++......++     ++-..|+.. -++++ ...|++||.  
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~--  191 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV--  191 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh--
Confidence            5689999999998766655432   56777788887655544333222     222222211 12332 235566554  


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                       ++-|..+     ...+.+...++.+..++.|||.+|+.--
T Consensus       192 -~~eLl~d-----~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         192 -LDELLPD-----GNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             -hhhhccc-----cCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence             4433221     1112256689999999999999998753

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.72  E-value=0.057  Score=46.73  Aligned_cols=96  Identities=19%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCC-----CCC--CCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQG-----LGL--RPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~-----~~~--~~~~f  114 (291)
                      |..|+|+|.-.|.+...++..    |  ..|+||||...-........    ..+.++.+|....     +..  .....
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~  112 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP  112 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence            679999999999988877642    2  79999999654443332222    4589999986431     111  12344


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .+||.-+.-.| .+           ....|.....+|++|+++|+
T Consensus       113 vlVilDs~H~~-~h-----------vl~eL~~y~plv~~G~Y~IV  145 (206)
T PF04989_consen  113 VLVILDSSHTH-EH-----------VLAELEAYAPLVSPGSYLIV  145 (206)
T ss_dssp             EEEEESS-----SS-----------HHHHHHHHHHT--TT-EEEE
T ss_pred             eEEEECCCccH-HH-----------HHHHHHHhCccCCCCCEEEE
Confidence            46664322111 11           55777889999999999998

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.59  E-value=0.1  Score=46.11  Aligned_cols=117  Identities=19%  Similarity=0.191  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHH---HHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCH----HHHHHHHhcCCcceE
Q 043626           29 IIDIQAKLSERAL---ELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQ----SMLNIALEREVEGDL   98 (291)
Q Consensus        29 ~~~iq~~~~~~~l---elL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~----~ml~~a~~~~~~~~~   98 (291)
                      +...+..++..++   +-+.+++   +.+||-+|+++|....++++. |  .-|++|+.|.    ..+..|+++ .++-.
T Consensus       134 WnPfrSKLAA~I~gGvdnihikp---GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-tNiiP  209 (317)
T KOG1596|consen  134 WNPFRSKLAAGILGGVDNIHIKP---GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-TNIIP  209 (317)
T ss_pred             eChHHHHHHHHhhcCccceeecC---CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-CCcee
Confidence            3445667776665   3344555   789999999999999999987 3  6899999887    455555554 44555


Q ss_pred             EEccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626           99 LLGDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus        99 ~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +..|+.....  ..-+-.|+|++.-+             ++.....+.-+....|++||-+++++.
T Consensus       210 IiEDArhP~KYRmlVgmVDvIFaDva-------------qpdq~RivaLNA~~FLk~gGhfvisik  262 (317)
T KOG1596|consen  210 IIEDARHPAKYRMLVGMVDVIFADVA-------------QPDQARIVALNAQYFLKNGGHFVISIK  262 (317)
T ss_pred             eeccCCCchheeeeeeeEEEEeccCC-------------CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence            6667644222  22346788876411             111133445577889999999999764

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.23  E-value=0.05  Score=50.05  Aligned_cols=83  Identities=24%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL-  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~-  107 (291)
                      .|...+++.|...+   +..+||.--|.|..+..+++.  +..++|+|.++.+++.|.++..    ...++..++.+.. 
T Consensus         7 Vll~Evl~~L~~~~---~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~   83 (310)
T PF01795_consen    7 VLLKEVLEALNPKP---GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE   83 (310)
T ss_dssp             TTHHHHHHHHT--T---T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred             ccHHHHHHhhCcCC---CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence            46778899998776   679999999999999999986  4899999999999999998764    2456666553310 


Q ss_pred             ---CC-CCCcccEEEEC
Q 043626          108 ---GL-RPGVVDGAISI  120 (291)
Q Consensus       108 ---~~-~~~~fD~Vis~  120 (291)
                         .. ....+|+|+.-
T Consensus        84 ~l~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   84 YLKELNGINKVDGILFD  100 (310)
T ss_dssp             HHHHTTTTS-EEEEEEE
T ss_pred             HHHHccCCCccCEEEEc
Confidence               12 23567777753

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PHA01634 hypothetical protein

Probab=95.18  E-value=0.11  Score=41.58  Aligned_cols=68  Identities=12%  Similarity=-0.062  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCC-CCCCCCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMG-QGLGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~-~~~~~~~~~fD~Vis  119 (291)
                      +.+|+|||.+.|.++..++-.| ..|++++.++...+...++.....+..--++ ...+-.-+.||+.+.
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i   98 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM   98 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence            5699999999999999999998 7999999999999999886544222211111 112324567888775

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.17  E-value=0.19  Score=49.44  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC----------C--C--------C
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG----------L--G--------L  109 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~----------~--~--------~  109 (291)
                      +.+||=+|||. |..+...+.. |..|+++|.++..++.+++..  .+++..|..+.          +  .        +
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--CeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            78999999997 6666666654 789999999999999998743  33332221110          0  0        0


Q ss_pred             CC--CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RP--GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~--~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..  ..+|+||.......-..           ...+.+...+.++|||.++..
T Consensus       243 ~~~~~gaDVVIetag~pg~~a-----------P~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPA-----------PKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             HhccCCCCEEEECCCCCcccC-----------cchHHHHHHHhcCCCCEEEEE
Confidence            11  36899997543321101           223358899999999998863

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.97  E-value=0.28  Score=45.21  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC--------C
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG--------L  107 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~--------~  107 (291)
                      ++..+-..+.   +.+||-+|+|+ |..+...++. | ..|+.+|+++.-|+.|++-...  .+.-+....        +
T Consensus       160 HAcr~~~vk~---Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~--~~~~~~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  160 HACRRAGVKK---GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGAT--VTDPSSHKSSPQELAELV  234 (354)
T ss_pred             hhhhhcCccc---CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCe--EEeeccccccHHHHHHHH
Confidence            3444445555   78999999998 7777777776 5 7999999999999999984332  221111000        0


Q ss_pred             --CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          108 --GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       108 --~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                        .+....||+++.-+-++                 ..++.....|+.||.+++.-+.....+...+.-.+++.-+
T Consensus       235 ~~~~g~~~~d~~~dCsG~~-----------------~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~  293 (354)
T KOG0024|consen  235 EKALGKKQPDVTFDCSGAE-----------------VTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDL  293 (354)
T ss_pred             HhhccccCCCeEEEccCch-----------------HHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeee
Confidence              11123488888665543                 4566678889999998887666554444433333333333

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.89  E-value=0.12  Score=47.24  Aligned_cols=58  Identities=28%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~   94 (291)
                      .-+...+++.|...+   +...||.--|-|..+..+.+..   ..++|+|-++.+++.|+++..
T Consensus         9 pVLl~E~i~~L~~~~---~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~   69 (314)
T COG0275           9 PVLLNEVVELLAPKP---DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK   69 (314)
T ss_pred             chHHHHHHHhcccCC---CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh
Confidence            357788999999887   6899999999999999999875   679999999999999998763

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.78  E-value=0.31  Score=45.08  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEc---cCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLG---DMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~---D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+||=+|||. |..+..+++. |. .++++|.++..++.+++.... .++..   ++.+ +....+.+|+|+-...-  
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~-~~~~~g~~D~vid~~G~--  245 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD-KLVNPQNDDLDH-YKAEKGYFDVSFEVSGH--  245 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc-EEecCCcccHHH-HhccCCCCCEEEECCCC--
Confidence            56888888863 4454555544 65 799999999999998875432 12211   1111 11112358988854221  


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                     ...+..+.++|++||++++.
T Consensus       246 ---------------~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        246 ---------------PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             ---------------HHHHHHHHHHhhcCCEEEEE
Confidence                           13566778899999998875

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.78  E-value=0.052  Score=49.27  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCCC-CCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGLG-LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~-~~~~~fD~Vis  119 (291)
                      +..||-||-|-|......+.+-  ..+.-+||....++..++-.+.         +.+..+|-...+. ...++||+||.
T Consensus       122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~  201 (337)
T KOG1562|consen  122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT  201 (337)
T ss_pred             CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence            7899999999999888877763  7899999999999988875543         5667776433332 33789999996


Q ss_pred             CCchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEE
Q 043626          120 ISAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      -+.=.-         -|...  .+.++..+.+.||++|+++.+-
T Consensus       202 dssdpv---------gpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  202 DSSDPV---------GPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             ecCCcc---------chHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            532111         12222  4778999999999999999863

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.78  E-value=0.033  Score=50.24  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHH
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLN   87 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~   87 (291)
                      +.+|||+|||+|.-+......| ..+...|.+...++
T Consensus       117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             CceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            5699999999999998888887 88999999888773

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=94.62  E-value=0.063  Score=51.55  Aligned_cols=103  Identities=22%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchhHHH--HHHcC--CeEEEEeCCHHHHHHHHhcCCc----ceEEEcc---CCCCCCCCCC-cccEEEE
Q 043626           52 PRLLLDIGCGSGLSGET--LSENG--HQWIGLDISQSMLNIALEREVE----GDLLLGD---MGQGLGLRPG-VVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~--L~~~g--~~v~gvDis~~ml~~a~~~~~~----~~~~~~D---~~~~~~~~~~-~fD~Vis  119 (291)
                      +..++|+|.|.|.-+-+  +...+  ..++.||-|..|+........+    +..+...   ....+|.... .||+||+
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~  280 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC  280 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence            67899999887654433  33333  6899999999999988766544    1222211   1123454443 4999999


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .+.++++.+       +..++...-.-...+.++|+.+++.-
T Consensus       281 ah~l~~~~s-------~~~R~~v~~s~~r~~~r~g~~lViIe  315 (491)
T KOG2539|consen  281 AHKLHELGS-------KFSRLDVPESLWRKTDRSGYFLVIIE  315 (491)
T ss_pred             eeeeeccCC-------chhhhhhhHHHHHhccCCCceEEEEe
Confidence            999999866       33334444445667788888888753

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.53  E-value=0.2  Score=41.92  Aligned_cols=79  Identities=18%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             CCCCcccEEEECCchhhhccc----cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCc
Q 043626          109 LRPGVVDGAISISAVQWLCNA----DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGG  184 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~----~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~  184 (291)
                      ...+.||.||-+  +.|+...    +.....-+.-+..||.++..+|+++|.+.++.....+...-.|..++.++||.-.
T Consensus        71 ~~~~~FDrIiFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~  148 (166)
T PF10354_consen   71 LKNQRFDRIIFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV  148 (166)
T ss_pred             ccCCcCCEEEEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence            457899999988  4454311    1111112233689999999999999999999876555455567788999999753


Q ss_pred             EEEeC
Q 043626          185 VVVDY  189 (291)
Q Consensus       185 ~~~~~  189 (291)
                      ..+.|
T Consensus       149 ~~~~F  153 (166)
T PF10354_consen  149 RKVPF  153 (166)
T ss_pred             EEecC
Confidence            33333

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=94.48  E-value=0.073  Score=52.68  Aligned_cols=139  Identities=17%  Similarity=0.196  Sum_probs=78.3

Q ss_pred             CCCcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHH
Q 043626            9 APPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSM   85 (291)
Q Consensus         9 ~ppe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~m   85 (291)
                      .-++.||.-..-.-|-+.+.+--+|-.-      ...+-.+  ...|||+||.+|.+....++.   |.-|+|||+-|- 
T Consensus        10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~------ky~fl~~--a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-   80 (780)
T KOG1098|consen   10 GRLDKYYRLAKELGYRSRSAFKLLQLNK------KYKFLEK--AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-   80 (780)
T ss_pred             ccchHHHHHHHHhchhHHHHHHHHHHHH------Hhccccc--cchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-
Confidence            3456677655555666555443333211      1112222  568999999999999998876   588999998662 


Q ss_pred             HHHHHhcCCcceEEEccCCCCC---C----CCCCcccEEEECCch----hhhccccccCCchHHHHHHHHHHHHHhccCC
Q 043626           86 LNIALEREVEGDLLLGDMGQGL---G----LRPGVVDGAISISAV----QWLCNADKASHEPRLRLKAFFGSLYRCLARG  154 (291)
Q Consensus        86 l~~a~~~~~~~~~~~~D~~~~~---~----~~~~~fD~Vis~~~l----~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg  154 (291)
                           .-.+++.-++.|++...   +    ...-..|+|++-.+.    .|+.++-.    ...-....+.-....|..|
T Consensus        81 -----kp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~----q~~L~l~al~LA~~~l~~~  151 (780)
T KOG1098|consen   81 -----KPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQ----QACLTLRALKLATEFLAKG  151 (780)
T ss_pred             -----ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHH----hhHHHHHHHHHHHHHHHhc
Confidence                 12234444555553310   0    111234666654432    34433210    0111245566677889999


Q ss_pred             cEEEEEEcCCC
Q 043626          155 ARAVFQIYPES  165 (291)
Q Consensus       155 G~lv~~~~~~~  165 (291)
                      |.++-.+++..
T Consensus       152 g~fvtkvfrs~  162 (780)
T KOG1098|consen  152 GTFVTKVFRSE  162 (780)
T ss_pred             CccccccccCC
Confidence            99887766643

>PRK13699 putative methylase; Provisional

Probab=94.43  E-value=0.083  Score=46.49  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             eEEEccCCCCC-CCCCCcccEEEECCchhh-hcc-ccc--cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626           97 DLLLGDMGQGL-GLRPGVVDGAISISAVQW-LCN-ADK--ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQREL  171 (291)
Q Consensus        97 ~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~-l~~-~~~--~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  171 (291)
                      .++++|..+.+ .++++++|+||......- ..+ ..+  ....-..-+..++.+++++|||||.+++-....   +...
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~---~~~~   79 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN---RVDR   79 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc---cHHH
Confidence            45666654433 456788899887633310 000 000  001111224688999999999999887643222   2345


Q ss_pred             HHHHHHHcCCCC
Q 043626          172 ILGAAMRAGFAG  183 (291)
Q Consensus       172 i~~~~~~aGF~~  183 (291)
                      +...+.++||.-
T Consensus        80 ~~~al~~~GF~l   91 (227)
T PRK13699         80 FMAAWKNAGFSV   91 (227)
T ss_pred             HHHHHHHCCCEE
Confidence            667788999974

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.43  E-value=0.12  Score=49.04  Aligned_cols=94  Identities=19%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~~  121 (291)
                      +.+|||.=+|||.=+...+..  + ..|+.-|+|+++++..+.|..       .+.+.+.|+...+......||+|=.. 
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD-  128 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD-  128 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence            468999999999977666654  3 789999999999999888742       14566677633333356789987632 


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                    |......|+..+.+.++.||.+.++
T Consensus       129 --------------PfGSp~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen  129 --------------PFGSPAPFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             ---------------SS--HHHHHHHHHHEEEEEEEEEE
T ss_pred             --------------CCCCccHhHHHHHHHhhcCCEEEEe
Confidence                          4444668999999999999999995

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.40  E-value=0.12  Score=48.26  Aligned_cols=94  Identities=19%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GH-QWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||-=+|||.=+..++.. +. .++.-|||+.+.+..++|..     +...+..|....+.-....||+|=.     
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-----  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-----  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence            459999999999988777755 44 89999999999999988653     2455555653333322466776542     


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                +|.....-|+..+.+.++.||.+.++
T Consensus       128 ----------DPFGSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         128 ----------DPFGSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             ----------CCCCCCchHHHHHHHHhhcCCEEEEE
Confidence                      23333567899999999999999984

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.43  Score=39.17  Aligned_cols=115  Identities=18%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      -.+.++.++.-.+   ..+.+|||.|-|.+....++.| ...+|+++++-.+..++-+.      ....|..-|+-. ..
T Consensus        60 Qv~nVLSll~~n~---~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK-~d  135 (199)
T KOG4058|consen   60 QVENVLSLLRGNP---KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK-VD  135 (199)
T ss_pred             HHHHHHHHccCCC---CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh-cc
Confidence            3455566664433   5799999999999999999998 78999999998887776432      123455555411 22


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRE  170 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~  170 (291)
                      +  ..|.-|+...+-+-+              ..+-..+..-|..+.+++..-+|-..-+++
T Consensus       136 l--~dy~~vviFgaes~m--------------~dLe~KL~~E~p~nt~vvacRFPLP~w~le  181 (199)
T KOG4058|consen  136 L--RDYRNVVIFGAESVM--------------PDLEDKLRTELPANTRVVACRFPLPTWQLE  181 (199)
T ss_pred             c--cccceEEEeehHHHH--------------hhhHHHHHhhCcCCCeEEEEecCCCccchH
Confidence            2  334444433333332              345556777888899888776675544443

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.32  E-value=0.98  Score=44.07  Aligned_cols=130  Identities=11%  Similarity=-0.014  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCC-----------------C
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGL-----------------R  110 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~-----------------~  110 (291)
                      ..+++|+-||.|.+..-+...| ..+.++|+++.+.+.-..++   +....+..|+.+ +..                 .
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~-i~~~~~~~~~~~~~~~~~~~~  166 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRD-ITLSHKEGVSDEEAAEHIRQH  166 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhh-Cccccccccchhhhhhhhhcc
Confidence            4689999999999999998888 56788999999988888776   334555566633 211                 1


Q ss_pred             CCcccEEEECCchhhhcccccc---------C--CchHHHHHHHHHHHHHhccCCcEEEEEE-----cCCChHHHHHHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKA---------S--HEPRLRLKAFFGSLYRCLARGARAVFQI-----YPESVAQRELILG  174 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~---------~--~~p~~~l~~~l~~l~~~LkpgG~lv~~~-----~~~~~~~~~~i~~  174 (291)
                      ...+|+++..+.-|-+..+-..         .  ++++..+-.-+-.+...++|. .+++.-     ..........|..
T Consensus       167 ~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk-~fvlENV~gl~s~~~g~~f~~i~~  245 (467)
T PRK10458        167 IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA-IFVLENVKNLKSHDKGKTFRIIMQ  245 (467)
T ss_pred             CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC-EEEEeCcHhhhcccccHHHHHHHH
Confidence            1257988877655544322110         0  123332322222344455676 334421     1123346778899


Q ss_pred             HHHHcCCCC
Q 043626          175 AAMRAGFAG  183 (291)
Q Consensus       175 ~~~~aGF~~  183 (291)
                      .|...||.-
T Consensus       246 ~L~~lGY~v  254 (467)
T PRK10458        246 TLDELGYDV  254 (467)
T ss_pred             HHHHcCCeE
Confidence            999999974

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.16  E-value=0.4  Score=45.25  Aligned_cols=101  Identities=17%  Similarity=0.131  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCC----CCC-CC-CCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMG----QGL-GL-RPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~----~~~-~~-~~~~fD~Vis~~~  122 (291)
                      +.+||.+|||+ |..+..+++. |. .++++|.++.+++.+++... ..++...-.    +.+ .+ ....+|+|+....
T Consensus       185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg  263 (386)
T cd08283         185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAVG  263 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence            67899999987 7777777765 54 69999999999999887632 233221110    001 11 1236899886421


Q ss_pred             -----------hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          123 -----------VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 -----------l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                 ++|+.       .|.......+..+.++|+++|++++.
T Consensus       264 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         264 MEAHGSPLHKAEQALL-------KLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             Cccccccccccccccc-------ccccCchHHHHHHHHHhccCCEEEEE
Confidence                       11110       00000135678889999999999875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.06  E-value=0.099  Score=45.93  Aligned_cols=92  Identities=21%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhCCCCC---CCCCeEEEEcCCCchhHHHHH--HcCCeEEEEeCCHHHHHHHHhcCCc-------ceEEE
Q 043626           33 QAKLSERALELLALPDD---GVPRLLLDIGCGSGLSGETLS--ENGHQWIGLDISQSMLNIALEREVE-------GDLLL  100 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~---~~~~~VLDiGcGsG~~~~~L~--~~g~~v~gvDis~~ml~~a~~~~~~-------~~~~~  100 (291)
                      .......+.++|....+   +....+||||.|.-.+=-.+-  +.|..++|.||++..++.|+.....       +.+..
T Consensus        57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~  136 (292)
T COG3129          57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRR  136 (292)
T ss_pred             hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEe
Confidence            44566677777753322   125689999988654333332  3368999999999999988765421       33333


Q ss_pred             ccCCC----CCCCCCCcccEEEECCchh
Q 043626          101 GDMGQ----GLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus       101 ~D~~~----~~~~~~~~fD~Vis~~~l~  124 (291)
                      ..-..    ++--..+.||.++||..+|
T Consensus       137 qk~~~~if~giig~nE~yd~tlCNPPFh  164 (292)
T COG3129         137 QKDSDAIFNGIIGKNERYDATLCNPPFH  164 (292)
T ss_pred             ccCccccccccccccceeeeEecCCCcc
Confidence            22111    1111257899999998887

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=93.98  E-value=0.036  Score=45.94  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHH-HHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNI-ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~-a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.++|-+|...=..-.....+| ..+.-|+.++--++. .+.+.  ..+...|+.....--.++||.+.|.++++|.--.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG   79 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--SSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG   79 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--ccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence            4577778877554444444566 678888865411110 01111  1111122211111225789999999999986421


Q ss_pred             ccc-CCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          130 DKA-SHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       130 ~~~-~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .-. .-+|...+ +.+..+..+||+||.+++.+
T Consensus        80 RYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   80 RYGDPIDPIGDL-RAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             ccCCCCCccccH-HHHHHHHHhhccCCeEEEEe
Confidence            100 12344434 56778999999999999975

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=1.5  Score=41.14  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----------CCeEEEEeCCHHHHHHHHhcCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----------GHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----------g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      .+++.+..|.   +..|++||.|.|.+..-++..          ...+.-|++|+.....-+++..
T Consensus        68 ~~wq~~g~p~---~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~  130 (370)
T COG1565          68 QLWQELGRPA---PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK  130 (370)
T ss_pred             HHHHHhcCCC---CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence            3444444554   678999999999988777642          3689999999998776665543

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=93.66  E-value=1  Score=40.37  Aligned_cols=118  Identities=15%  Similarity=0.169  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC--------cceEEEccC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV--------EGDLLLGDM  103 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~  103 (291)
                      ...+.+.++.......   ...|+.+|||-=.-...|... +..|+-+|. |.+++.-++...        ...++..|+
T Consensus        66 Rtr~~D~~i~~~~~~g---~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl  141 (260)
T TIGR00027        66 RTRFFDDFLLAAVAAG---IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDL  141 (260)
T ss_pred             HHHHHHHHHHHHHhcC---CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCc
Confidence            3444444444322122   347999999987777766543 478888887 445543333322        246677777


Q ss_pred             CCCC-------CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          104 GQGL-------GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       104 ~~~~-------~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ...+       .|.+...-++|+-.++.||..         .....+|..+.....||+.+++....
T Consensus       142 ~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~---------~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       142 RQDWPAALAAAGFDPTAPTAWLWEGLLMYLTE---------EAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             hhhHHHHHHhCCCCCCCCeeeeecchhhcCCH---------HHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            4211       244455668888899999843         44788999999988899999998754

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.64  E-value=1  Score=40.96  Aligned_cols=90  Identities=23%  Similarity=0.319  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l~  124 (291)
                      +..||..|||. |..+..++. .|..+++++.++...+.+++...  +.+..+-....     ......+|+|+..... 
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~-  242 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA--DEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT-  242 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--CEEEcCCCcCHHHHHHHhcCCCceEEEECCCC-
Confidence            56888888763 555555555 47889999999999988865432  22222211111     1224568988854211 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                      ...+..+.++|+++|.++..
T Consensus       243 ----------------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         243 ----------------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             ----------------HHHHHHHHHHhhcCCEEEEE
Confidence                            24567788999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.40  E-value=0.23  Score=46.48  Aligned_cols=92  Identities=23%  Similarity=0.206  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEc---cCCC-CCCCCC-CcccEEEECCch
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLG---DMGQ-GLGLRP-GVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~---D~~~-~~~~~~-~~fD~Vis~~~l  123 (291)
                      +.+|+=+|||+ |+++..+++. | ..|+.+|.++.-++.|++....-.+...   +... ...... ..+|+|+=....
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~  248 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS  248 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            34899999998 8887777766 5 7999999999999999884432111111   0000 001112 368999854331


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ..++..+..++++||.+++.
T Consensus       249 -----------------~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         249 -----------------PPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             -----------------HHHHHHHHHHhcCCCEEEEE
Confidence                             24778899999999999874

>PRK11524 putative methyltransferase; Provisional

Probab=93.01  E-value=0.16  Score=46.16  Aligned_cols=84  Identities=14%  Similarity=0.026  Sum_probs=47.7

Q ss_pred             ceEEEccCCCCC-CCCCCcccEEEECCchhhhcc-cccc-CCc---hHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHH
Q 043626           96 GDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCN-ADKA-SHE---PRLRLKAFFGSLYRCLARGARAVFQIYPESVAQR  169 (291)
Q Consensus        96 ~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~-~~~~-~~~---p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~  169 (291)
                      ..++++|..+.+ .+++++||+||+...+.--.+ .+.. ...   -..-+..+|..++++|||||.+++.....   .+
T Consensus         9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~---~~   85 (284)
T PRK11524          9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE---NM   85 (284)
T ss_pred             CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch---hh
Confidence            456777765432 345788999998744321000 0000 000   00114678999999999999999864322   22


Q ss_pred             HHHHHHHHHcCCCC
Q 043626          170 ELILGAAMRAGFAG  183 (291)
Q Consensus       170 ~~i~~~~~~aGF~~  183 (291)
                      . ....+.+.||.-
T Consensus        86 ~-~~~~~~~~~f~~   98 (284)
T PRK11524         86 P-FIDLYCRKLFTI   98 (284)
T ss_pred             h-HHHHHHhcCcce
Confidence            2 234566778753

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=92.81  E-value=0.38  Score=47.04  Aligned_cols=134  Identities=10%  Similarity=0.101  Sum_probs=86.8

Q ss_pred             hhhccccccch----hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc------CCeEEEEeCCHHHHH
Q 043626           18 TEARKYTSSSR----IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN------GHQWIGLDISQSMLN   87 (291)
Q Consensus        18 ~~a~~Y~~~~~----~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~------g~~v~gvDis~~ml~   87 (291)
                      -++..|....+    ...+|+.+...++++......+....|+=+|+|-|-+.....+.      -..+++|+-+|.++-
T Consensus       330 Le~~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAiv  409 (649)
T KOG0822|consen  330 LENQTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIV  409 (649)
T ss_pred             hhhhhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhh
Confidence            55666665432    44566777777777654332112457899999999877655432      268999999999887


Q ss_pred             HHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           88 IALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        88 ~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ....+..     .+.++-.||.. .+.+....|++||- .|.-+-|-+-        -...|..+-+.|||.|..+=+-
T Consensus       410 tL~~~n~~~W~~~Vtii~~DMR~-w~ap~eq~DI~VSE-LLGSFGDNEL--------SPECLDG~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  410 TLQNRNFECWDNRVTIISSDMRK-WNAPREQADIIVSE-LLGSFGDNEL--------SPECLDGAQKFLKPDGISIPSS  478 (649)
T ss_pred             hhhhhchhhhcCeeEEEeccccc-cCCchhhccchHHH-hhccccCccC--------CHHHHHHHHhhcCCCceEccch
Confidence            6665432     37889999955 44223789998863 2222222111        1367888999999999877543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.54  E-value=0.8  Score=42.42  Aligned_cols=88  Identities=13%  Similarity=0.096  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN--G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+||=+|||. |.++..++..  | ..++++|.++.-++.++..  .......++.+     ...+|+|+-..--..  
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~--~~~~~~~~~~~-----~~g~d~viD~~G~~~--  234 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA--DETYLIDDIPE-----DLAVDHAFECVGGRG--  234 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc--Cceeehhhhhh-----ccCCcEEEECCCCCc--
Confidence            67999999875 5555555542  4 6899999999888888651  11111111111     114788884321000  


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                  ....+....++|++||++++.
T Consensus       235 ------------~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         235 ------------SQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             ------------cHHHHHHHHHhCcCCcEEEEE
Confidence                        124577788999999999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.49  E-value=2  Score=39.62  Aligned_cols=86  Identities=15%  Similarity=0.088  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.+||=.|+|. |.....+++ .|..+++++.++.-++.+++..... ++  +..+   ...+.+|+++-....      
T Consensus       166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-vi--~~~~---~~~~~~d~~i~~~~~------  233 (329)
T TIGR02822       166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-AG--GAYD---TPPEPLDAAILFAPA------  233 (329)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-ec--cccc---cCcccceEEEECCCc------
Confidence            67899999753 333344444 3778999999999888887754331 11  1111   112357876633211      


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                 ...+....++|++||++++.
T Consensus       234 -----------~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       234 -----------GGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             -----------HHHHHHHHHhhCCCcEEEEE
Confidence                       13567788999999999864

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.21  E-value=1.1  Score=35.07  Aligned_cols=65  Identities=20%  Similarity=0.157  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      ..+|+++|.|-=. .+..|+++|..++++||.+.   .|.   ..+.++..|+...-----...|+|.|+-.
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiRp   79 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP---EGLRFVVDDITNPNISIYEGADLIYSIRP   79 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc---ccceEEEccCCCccHHHhhCccceeecCC
Confidence            4599999988755 67888899999999999887   221   34688888985421111235688888744

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.21  E-value=1  Score=38.21  Aligned_cols=116  Identities=23%  Similarity=0.288  Sum_probs=58.3

Q ss_pred             eEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc----------------ceEEE-ccCCCCCCCCCCcc
Q 043626           54 LLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVE----------------GDLLL-GDMGQGLGLRPGVV  114 (291)
Q Consensus        54 ~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~----------------~~~~~-~D~~~~~~~~~~~f  114 (291)
                      +|-=||.|- |. ++..|++.|++|+|+|+++.-++...+-...                ..+.. .|...    .....
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~----ai~~a   77 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEE----AIKDA   77 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH----HHHH-
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhh----hhhcc
Confidence            455567664 43 4466678899999999999988877653221                12221 12100    01234


Q ss_pred             cEEEE-CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE--EcCCChHHHHHHHHHHHHcC
Q 043626          115 DGAIS-ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ--IYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       115 D~Vis-~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~--~~~~~~~~~~~i~~~~~~aG  180 (291)
                      |+++. ..+...   .+  ..-....+...+..+...|+++..+++.  ++|..  ..+.+...+.+.+
T Consensus        78 dv~~I~VpTP~~---~~--~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt--t~~~~~~ile~~~  139 (185)
T PF03721_consen   78 DVVFICVPTPSD---ED--GSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT--TEELLKPILEKRS  139 (185)
T ss_dssp             SEEEE----EBE---TT--TSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH--HHHHHHHHHHHHC
T ss_pred             ceEEEecCCCcc---cc--CCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee--ehHhhhhhhhhhc
Confidence            55553 222111   10  0111122688899999999998777773  33332  2224445555443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=91.69  E-value=2.1  Score=38.26  Aligned_cols=118  Identities=17%  Similarity=0.082  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchhHHHHHH----c---CCeEEEEeCCH--------------------------HHHHHHHhcCC----
Q 043626           52 PRLLLDIGCGSGLSGETLSE----N---GHQWIGLDISQ--------------------------SMLNIALEREV----   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~----~---g~~v~gvDis~--------------------------~ml~~a~~~~~----   94 (291)
                      +.-|+|+||=.|.++..++.    .   +..++++|.=+                          ..++..++++.    
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            66999999999987755432    1   25688888321                          12344444432    


Q ss_pred             ---cceEEEccCCCCCCC-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626           95 ---EGDLLLGDMGQGLGL-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRE  170 (291)
Q Consensus        95 ---~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~  170 (291)
                         ++.++.+.+.+.+|- +...+-++       ||.   ...++|   ....|..++..|.|||.++|..|.. +....
T Consensus       155 ~~~~v~~vkG~F~dTLp~~p~~~IAll-------~lD---~DlYes---T~~aLe~lyprl~~GGiIi~DDY~~-~gcr~  220 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDAPIERIALL-------HLD---CDLYES---TKDALEFLYPRLSPGGIIIFDDYGH-PGCRK  220 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC-TT--EEEE-------EE------SHHH---HHHHHHHHGGGEEEEEEEEESSTTT-HHHHH
T ss_pred             CcccEEEECCcchhhhccCCCccEEEE-------EEe---ccchHH---HHHHHHHHHhhcCCCeEEEEeCCCC-hHHHH
Confidence               357777877555552 22222222       221   112233   5688999999999999999998877 66677


Q ss_pred             HHHHHHHHcCCCC
Q 043626          171 LILGAAMRAGFAG  183 (291)
Q Consensus       171 ~i~~~~~~aGF~~  183 (291)
                      .+.+.+.+.|...
T Consensus       221 AvdeF~~~~gi~~  233 (248)
T PF05711_consen  221 AVDEFRAEHGITD  233 (248)
T ss_dssp             HHHHHHHHTT--S
T ss_pred             HHHHHHHHcCCCC
Confidence            7888888888876

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.60  E-value=0.23  Score=47.46  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=36.0

Q ss_pred             CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhc
Q 043626           53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER   92 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~   92 (291)
                      ..|||||+|||+++......| -.|++++.-..|.+.|+..
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI  108 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKI  108 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHH
Confidence            479999999999999888887 6899999999999999874

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.22  E-value=1.7  Score=38.99  Aligned_cols=91  Identities=25%  Similarity=0.282  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCC-CC-CCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLG-DMGQGL-GL-RPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~-~~-~~~~fD~Vis~~~l~~  125 (291)
                      +..||=+|+|+ |..+..+++. |.. ++++|.++.-++.+++.... .++.. +....+ .. ....+|+|+-...-  
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g~d~vid~~G~--  197 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-ALAEPEVLAERQGGLQNGRGVDVALEFSGA--  197 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-EecCchhhHHHHHHHhCCCCCCEEEECCCC--
Confidence            66888888764 4444445544 654 99999999988888775432 11111 100000 00 12358888853211  


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                     ...+..+.++|+++|++++.
T Consensus       198 ---------------~~~~~~~~~~l~~~G~iv~~  217 (280)
T TIGR03366       198 ---------------TAAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             ---------------hHHHHHHHHHhcCCCEEEEe
Confidence                           13566778899999999864

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.00  E-value=2.3  Score=39.37  Aligned_cols=89  Identities=20%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeC---CHHHHHHHHhcCCcceEEEccCCCCC--CCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDI---SQSMLNIALEREVEGDLLLGDMGQGL--GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDi---s~~ml~~a~~~~~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~l~  124 (291)
                      +.+||=+|||. |.++..+++. |..+++++.   ++.-++.+++....  .+...- +..  ....+.+|+||-...- 
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~--~v~~~~-~~~~~~~~~~~~d~vid~~g~-  248 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT--YVNSSK-TPVAEVKLVGEFDLIIEATGV-  248 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE--EecCCc-cchhhhhhcCCCCEEEECcCC-
Confidence            56899999864 5555555554 678999986   67888877764332  221110 100  0012468988854221 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                      ...+....++|++||.+++.
T Consensus       249 ----------------~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         249 ----------------PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             ----------------HHHHHHHHHHccCCcEEEEE
Confidence                            13567788999999998764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.95  E-value=1.2  Score=39.63  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=33.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc----------CCeEEEEeCCHHHHHHHHhcCCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN----------GHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~----------g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      +..|+|+|+|+|.+...++..          ...++.||+|+.+.+.-+++...
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            579999999999999887753          15899999999998877776643

; PDB: 4F3N_A 1ZKD_B.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.67  E-value=2.5  Score=36.69  Aligned_cols=91  Identities=23%  Similarity=0.198  Sum_probs=56.1

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----CCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL----GLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+||.+|+|+ |.....++. .|..+++++.++...+.+...... .++...-....    ....+.+|+|+....-  
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~--  211 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-HVIDYKEEDLEEELRLTGGGGADVVIDAVGG--  211 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-eeccCCcCCHHHHHHHhcCCCCCEEEECCCC--
Confidence            67999999986 444444444 478999999999888877654321 11111100000    0123579999864221  


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                     ...+..+.++|+++|.++..
T Consensus       212 ---------------~~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         212 ---------------PETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             ---------------HHHHHHHHHhcccCCEEEEE
Confidence                           13456678889999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.56  E-value=3.1  Score=31.77  Aligned_cols=101  Identities=16%  Similarity=0.183  Sum_probs=62.3

Q ss_pred             CCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEECCchhhhcccccc
Q 043626           60 CGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISISAVQWLCNADKA  132 (291)
Q Consensus        60 cGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~~~l~~l~~~~~~  132 (291)
                      ||.|..+..+++.    +..++.+|.++..++.+....  ..++.+|..+.-   ...-...|.|++...     +    
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~----   72 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD-----D----   72 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS-----S----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC-----C----
Confidence            5666677666643    458999999999998888776  668889985521   122357787776422     1    


Q ss_pred             CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          133 SHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                         .  .....+....+.+.|...++......  ..    ...+.++|..
T Consensus        73 ---d--~~n~~~~~~~r~~~~~~~ii~~~~~~--~~----~~~l~~~g~d  111 (116)
T PF02254_consen   73 ---D--EENLLIALLARELNPDIRIIARVNDP--EN----AELLRQAGAD  111 (116)
T ss_dssp             ---H--HHHHHHHHHHHHHTTTSEEEEEESSH--HH----HHHHHHTT-S
T ss_pred             ---H--HHHHHHHHHHHHHCCCCeEEEEECCH--HH----HHHHHHCCcC
Confidence               1  12334445667778889999887422  22    3345566664

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.89  E-value=0.57  Score=44.49  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             HHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           88 IALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        88 ~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ..+.+...+.++.+++.+.+. .+++++|.++......|+.+         ..+...++.+.+.++|||++++....
T Consensus       269 ~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~---------~~~~~~~~~l~~~~~pgaRV~~Rsa~  336 (380)
T PF11899_consen  269 ALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP---------EQLNEEWQELARTARPGARVLWRSAA  336 (380)
T ss_pred             HHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH---------HHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence            334444457888888765443 45899999999999999854         44889999999999999999996544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=89.87  E-value=0.44  Score=37.93  Aligned_cols=89  Identities=19%  Similarity=0.116  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      ..+|+|||-|.=. .+..|.+.|..|+++|+.+.   .+.   ..+.++.-|+.+.-.---...|+|.|+....-     
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~---~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~E-----   82 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP---EGVNFVVDDIFNPNLEIYEGADLIYSIRPPPE-----   82 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------STTEE---SSS--HHHHTTEEEEEEES--TT-----
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc---cCcceeeecccCCCHHHhcCCcEEEEeCCChH-----
Confidence            4499999999855 67778888999999999987   111   34688888885421111236789998744332     


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                               +...+-.+++.+  |.-+++...
T Consensus        83 ---------l~~~il~lA~~v--~adlii~pL  103 (127)
T PF03686_consen   83 ---------LQPPILELAKKV--GADLIIRPL  103 (127)
T ss_dssp             ---------SHHHHHHHHHHH--T-EEEEE-B
T ss_pred             ---------HhHHHHHHHHHh--CCCEEEECC
Confidence                     445555555543  566666543

; PDB: 2K4M_A.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=89.80  E-value=1.3  Score=34.38  Aligned_cols=83  Identities=22%  Similarity=0.186  Sum_probs=55.1

Q ss_pred             CCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CCCCcccEEEECCchhhhccccccCC
Q 043626           61 GSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LRPGVVDGAISISAVQWLCNADKASH  134 (291)
Q Consensus        61 GsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~~~~fD~Vis~~~l~~l~~~~~~~~  134 (291)
                      |.|..+..+++. |..++++|.++.-++.+++.... .++..+-.+   .+ . .....+|+||-...-           
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-----------   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-----------   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----------
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-ccccccccccccccccccccccceEEEEecCc-----------
Confidence            357777777765 79999999999999999876522 222222111   00 1 123479999854221           


Q ss_pred             chHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          135 EPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       135 ~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                            ...+.....+|+++|++++.-
T Consensus        69 ------~~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   69 ------GDTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             ------HHHHHHHHHHEEEEEEEEEES
T ss_pred             ------HHHHHHHHHHhccCCEEEEEE
Confidence                  256778899999999999853

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.80  E-value=1.1  Score=42.34  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=33.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALE   91 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~   91 (291)
                      -..|+|+|.|.|.++..|+=. |+.|++||-|....+.|+.
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            458999999999999999865 6999999999776665543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=89.79  E-value=1.1  Score=38.38  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchhHHHHHH----cC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----C-CCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSE----NG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----G-LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~----~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~-~~~~~fD~Vis  119 (291)
                      +..|+++|.--|.+....+.    .|  ..|+++||+-.-++-+....+.+.|+.++-....     . ...+.--+.++
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfvi  149 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVI  149 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence            67999999999988877765    36  7999999998887777766778889888753310     0 11111122333


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+-|+.           ....+-++.+..+|.-|-++++.
T Consensus       150 lDsdHs~-----------~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         150 LDSDHSM-----------EHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             ecCCchH-----------HHHHHHHHHhhhHhhcCceEEEe
Confidence            3333332           22556777788888889888874

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=89.78  E-value=2.1  Score=39.35  Aligned_cols=108  Identities=18%  Similarity=0.078  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchhHHHHHHcC----------------------CeEEEEeCCH--HHHHHHHh---cC------------
Q 043626           53 RLLLDIGCGSGLSGETLSENG----------------------HQWIGLDISQ--SMLNIALE---RE------------   93 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g----------------------~~v~gvDis~--~ml~~a~~---~~------------   93 (291)
                      .+||-||-|.|.-...|+...                      ..|+.|||.+  ..++....   ..            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999987554444211                      3899999876  23332222   11            


Q ss_pred             -------CcceEEEccCCCCCC------CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           94 -------VEGDLLLGDMGQGLG------LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        94 -------~~~~~~~~D~~~~~~------~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                             -.+.|.+.|+.....      +.+.+.++|...+++.-|-..     . ...-.+||..+...++||..+++.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~-----s-~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST-----S-ISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc-----C-hHHHHHHHHHHHhhcCCCcEEEEE
Confidence                   015777888744211      112357888877777766431     1 222568999999999999999997


Q ss_pred             EcCCCh
Q 043626          161 IYPESV  166 (291)
Q Consensus       161 ~~~~~~  166 (291)
                      ..|...
T Consensus       242 DSpGSY  247 (315)
T PF11312_consen  242 DSPGSY  247 (315)
T ss_pred             cCCCCc
Confidence            666543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.75  E-value=1.6  Score=40.81  Aligned_cols=91  Identities=22%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc---CCCCC-CCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD---MGQGL-GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D---~~~~~-~~~~~~fD~Vis~~~l~  124 (291)
                      +.+||=+|+|. |..+..+++. |. .|+++|.++.-++.+++.... .++...   ..+.+ ....+.+|+|+-...- 
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~-  269 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAFEMAGS-  269 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEEECCCC-
Confidence            56788888764 4444545544 66 699999999999988764332 122111   00000 1112368988853211 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                      ...+....++|+++|++++.
T Consensus       270 ----------------~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         270 ----------------VPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             ----------------hHHHHHHHHHHhcCCEEEEE
Confidence                            13466678899999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=89.43  E-value=2  Score=39.39  Aligned_cols=99  Identities=23%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             HHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCC--CCC-CC-CCCc
Q 043626           41 LELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMG--QGL-GL-RPGV  113 (291)
Q Consensus        41 lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~--~~~-~~-~~~~  113 (291)
                      ++.+.+.+   +.+||=+|+|. |..+..+++. |.. +++++.++..++.+++.... .++...-.  ..+ .. ....
T Consensus       156 l~~~~~~~---g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~  231 (339)
T cd08239         156 LRRVGVSG---RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD-FVINSGQDDVQEIRELTSGAG  231 (339)
T ss_pred             HHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-EEEcCCcchHHHHHHHhCCCC
Confidence            34444444   66888888753 3344444443 666 99999999988888664321 12211100  000 11 1236


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+|+-...-                 ...+....++|+++|++++.
T Consensus       232 ~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         232 ADVAIECSGN-----------------TAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            8998853211                 13455677889999998863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.20  E-value=2.5  Score=38.48  Aligned_cols=83  Identities=20%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      +.+||=+|||. |.++..+++. |. .++++|.++..++.|....    ++  |..+.   ....+|+|+-...-     
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~i--~~~~~---~~~g~Dvvid~~G~-----  210 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----VL--DPEKD---PRRDYRAIYDASGD-----  210 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----cc--Chhhc---cCCCCCEEEECCCC-----
Confidence            45788888875 6666666654 64 5778899988887775421    11  21111   13468988854221     


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                  ...+..+.++|+++|++++.
T Consensus       211 ------------~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       211 ------------PSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             ------------HHHHHHHHHhhhcCcEEEEE
Confidence                        13566788899999999964

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.16  E-value=12  Score=35.87  Aligned_cols=102  Identities=13%  Similarity=0.002  Sum_probs=59.0

Q ss_pred             CCeEEEEcCCC-chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGS-GLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.+|+=+|||. |.....++ ..|..|+++|.++.-...+....  ..+  .++.+.+    ...|+||+...-      
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G--~~v--~~leeal----~~aDVVItaTG~------  260 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG--FRV--MTMEEAA----KIGDIFITATGN------  260 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC--CEe--CCHHHHH----hcCCEEEECCCC------
Confidence            67999999987 44333333 34789999999886544443321  111  1221111    346888864211      


Q ss_pred             cccCCchHHHHHHHHH-HHHHhccCCcEEEEEEcCCChHHHHHHHHHHHH
Q 043626          130 DKASHEPRLRLKAFFG-SLYRCLARGARAVFQIYPESVAQRELILGAAMR  178 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~-~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~  178 (291)
                                 ..++. .....+++|++++..-.....-....+.+.+..
T Consensus       261 -----------~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~  299 (406)
T TIGR00936       261 -----------KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE  299 (406)
T ss_pred             -----------HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence                       23343 477889999988876544333445555555444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.03  E-value=1.5  Score=43.15  Aligned_cols=94  Identities=18%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC----------------------C
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG----------------------L  107 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~----------------------~  107 (291)
                      +.+||=+|||. |.....++. .|..++++|.++..++.++..  ..+++..|..+.                      +
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l--Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM--GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            67999999987 555554444 478899999999988888763  233433332110                      0


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                      +-.-..+|+||....+.--+.           ..-+.++..+.+|||+.++
T Consensus       242 ~e~~~~~DIVI~TalipG~~a-----------P~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKPA-----------PKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHhCCCCEEEECcccCCCCC-----------CeeehHHHHhhCCCCCEEE
Confidence            111246899986543322111           1235667788999999877

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.87  E-value=6.5  Score=35.83  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCC--CCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGH-QWIGLDISQSMLNIALEREVEGDLLLGDMG--QGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~--~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +..||-.|||. |..+..++. .|. .+++++.++...+.+.+.... .++...-.  ..+....+.+|+|+.....   
T Consensus       166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~~~~vd~vld~~g~---  241 (339)
T cd08232         166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD-ETVNLARDPLAAYAADKGDFDVVFEASGA---  241 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC-EEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence            67888888764 445444554 476 799999999988876654321 22221100  0111112358998864221   


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                    ...+..+.++|+++|+++..
T Consensus       242 --------------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         242 --------------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             --------------HHHHHHHHHHHhcCCEEEEE
Confidence                          13466788999999998863

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=88.46  E-value=7.3  Score=35.30  Aligned_cols=90  Identities=17%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             CCeEEEEcCC-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCG-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcG-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~  128 (291)
                      +..||-+||| .|..+..++.. |..+++++.++..++.+.+..  .+.+..+...... ...+.+|+++....-     
T Consensus       163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-----  235 (330)
T cd08245         163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG--ADEVVDSGAELDEQAAAGGADVILVTVVS-----  235 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC--CcEEeccCCcchHHhccCCCCEEEECCCc-----
Confidence            5688888886 34444444444 789999999999888875432  2222111101000 012468988854211     


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                  ...+..+.++|+++|.++..
T Consensus       236 ------------~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         236 ------------GAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             ------------HHHHHHHHHhcccCCEEEEE
Confidence                        13456778899999988864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.43  E-value=4.7  Score=38.73  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGS-GLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      .+.++...++.-.  +.+|+=+|||. |.....++ ..|..|+.+|+++.-+..|.....  ..+  ++.+.+    ..+
T Consensus       189 ~~~i~r~t~~~l~--GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~--~~~--~~~e~v----~~a  258 (413)
T cd00401         189 IDGIKRATDVMIA--GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY--EVM--TMEEAV----KEG  258 (413)
T ss_pred             HHHHHHhcCCCCC--CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC--EEc--cHHHHH----cCC
Confidence            3555665555332  67999999997 55444444 447899999999988887765432  221  111111    347


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHH-HHHhccCCcEEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGS-LYRCLARGARAVFQI  161 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~-l~~~LkpgG~lv~~~  161 (291)
                      |+||....-                 ..++.. ...++++||+++..-
T Consensus       259 DVVI~atG~-----------------~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGN-----------------KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCC-----------------HHHHHHHHHhcCCCCcEEEEeC
Confidence            999864221                 133443 588999999887654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=87.98  E-value=4.3  Score=37.86  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHH-HHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLN-IALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~-~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      +.+||-+|||. |..+..+++. |..+++++.+..... .+++.... .++...-...+....+.+|+|+-...-     
T Consensus       184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~-~vi~~~~~~~~~~~~~~~D~vid~~g~-----  257 (360)
T PLN02586        184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD-SFLVSTDPEKMKAAIGTMDYIIDTVSA-----  257 (360)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc-EEEcCCCHHHHHhhcCCCCEEEECCCC-----
Confidence            56788788864 5555555544 778888888765443 33332211 122110000010001247888853211     


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                  ...+....++|++||++++.
T Consensus       258 ------------~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        258 ------------VHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             ------------HHHHHHHHHHhcCCcEEEEe
Confidence                        13566788899999998864

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=87.53  E-value=8.7  Score=35.59  Aligned_cols=91  Identities=16%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~~~~fD~Vis~~~l  123 (291)
                      +.+||=+|||. |..+..+++. |. .++++|.++..++.+++.... .++...-.+   .+ . .....+|+|+-...-
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT-HTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-eEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            67888888754 4444445544 65 599999999999988764332 222111000   00 0 112358988853211


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ...+.....+|++||++++.
T Consensus       256 -----------------~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       256 -----------------PETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             -----------------HHHHHHHHHHhccCCEEEEE
Confidence                             13455677899999998864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=87.14  E-value=2.1  Score=38.55  Aligned_cols=58  Identities=29%  Similarity=0.465  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      ..+.++++..... .   +..|||--+|+|..+.+....|..++|+|+++..++.+.++...
T Consensus       209 ~~l~~r~i~~~s~-~---~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         209 LALIERLIRDYSF-P---GDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHHHHHHhcCC-C---CCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence            3566777776332 2   67999999999999999999999999999999999999988654

>PLN02740 Alcohol dehydrogenase-like

Probab=87.04  E-value=5.1  Score=37.63  Aligned_cols=91  Identities=18%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-----CCCCC-CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-----MGQGL-GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-----~~~~~-~~~~~~fD~Vis~~~  122 (291)
                      +.+||=+|||+ |..+..+++. |. .|+++|.++..++.+++.... .++...     ..+.+ .+..+.+|+|+-...
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G  277 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT-DFINPKDSDKPVHERIREMTGGGVDYSFECAG  277 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc-EEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            67899898764 4444445544 65 699999999999988764332 222211     10000 111236898885422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      -                 ...+.....++++| |++++.
T Consensus       278 ~-----------------~~~~~~a~~~~~~g~G~~v~~  299 (381)
T PLN02740        278 N-----------------VEVLREAFLSTHDGWGLTVLL  299 (381)
T ss_pred             C-----------------hHHHHHHHHhhhcCCCEEEEE
Confidence            1                 13566677788886 887753

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.94  E-value=6.2  Score=37.59  Aligned_cols=40  Identities=33%  Similarity=0.503  Sum_probs=31.1

Q ss_pred             eEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcC
Q 043626           54 LLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALERE   93 (291)
Q Consensus        54 ~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~   93 (291)
                      +|--+|+|. |+ .+..|++.||+|+|+|+++.-++..+...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~   43 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGI   43 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCC
Confidence            455677775 55 45677788999999999999998887654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=86.72  E-value=12  Score=34.58  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALERE   93 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~   93 (291)
                      +.+||=+|||+ |.....++.. |..++++|.++..++.+++..
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G  210 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG  210 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC
Confidence            67999999854 5554555544 678999999999998886643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=86.17  E-value=12  Score=34.71  Aligned_cols=91  Identities=11%  Similarity=0.024  Sum_probs=55.7

Q ss_pred             CCeEEEEcCC--CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEc----cCCCCC-CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCG--SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLG----DMGQGL-GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcG--sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~----D~~~~~-~~~~~~fD~Vis~~~l  123 (291)
                      +.+||=.|++  .|..+..+++. |..+++++.++..++.++....--.++..    +..+.+ ....+.+|+|+-... 
T Consensus       159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG-  237 (348)
T PLN03154        159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG-  237 (348)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC-
Confidence            6789999983  46666666655 78899999999888877632221122221    110000 111245888885311 


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ...+..+.++|++||++++.
T Consensus       238 -----------------~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        238 -----------------GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             -----------------HHHHHHHHHHhccCCEEEEE
Confidence                             13466788999999998863

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=85.97  E-value=0.21  Score=39.78  Aligned_cols=81  Identities=21%  Similarity=0.208  Sum_probs=45.5

Q ss_pred             ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHH
Q 043626           96 GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGA  175 (291)
Q Consensus        96 ~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~  175 (291)
                      .++..+|+.+.++--...||+|+....        ....+|..=-..+|+.+++++++||.+.  +|...    ..+...
T Consensus        33 L~L~~gDa~~~l~~l~~~~Da~ylDgF--------sP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a----~~Vr~~   98 (124)
T PF05430_consen   33 LTLWFGDAREMLPQLDARFDAWYLDGF--------SPAKNPELWSEELFKKLARLSKPGGTLA--TYSSA----GAVRRA   98 (124)
T ss_dssp             EEEEES-HHHHHHHB-T-EEEEEE-SS---------TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--B----HHHHHH
T ss_pred             EEEEEcHHHHHHHhCcccCCEEEecCC--------CCcCCcccCCHHHHHHHHHHhCCCcEEE--Eeech----HHHHHH
Confidence            355666664433322367888885421        1112232222689999999999998665  44332    357778


Q ss_pred             HHHcCCCCcEEEeCC
Q 043626          176 AMRAGFAGGVVVDYP  190 (291)
Q Consensus       176 ~~~aGF~~~~~~~~p  190 (291)
                      +..+||.......++
T Consensus        99 L~~aGF~v~~~~g~g  113 (124)
T PF05430_consen   99 LQQAGFEVEKVPGFG  113 (124)
T ss_dssp             HHHCTEEEEEEE-ST
T ss_pred             HHHcCCEEEEcCCCC
Confidence            999999864444443

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=85.95  E-value=5.1  Score=36.53  Aligned_cols=117  Identities=19%  Similarity=0.167  Sum_probs=67.4

Q ss_pred             eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|-=||+|.  +.+...|++.|+.|++.|.++..++.+.+.....   ..+..+ +.......|+|++.-.-        
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~---~~s~~~-~~~~~~~~dvIi~~vp~--------   69 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTG---VANLRE-LSQRLSAPRVVWVMVPH--------   69 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcc---cCCHHH-HHhhcCCCCEEEEEcCc--------
Confidence            456678876  2355666677899999999998887776532111   111100 00001245888764111        


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                            .....++..+...|++|- +++......+.....+...+...|.   ..++-|-+
T Consensus        70 ------~~~~~v~~~l~~~l~~g~-ivid~st~~~~~t~~~~~~~~~~g~---~~vda~vs  120 (298)
T TIGR00872        70 ------GIVDAVLEELAPTLEKGD-IVIDGGNSYYKDSLRRYKLLKEKGI---HLLDCGTS  120 (298)
T ss_pred             ------hHHHHHHHHHHhhCCCCC-EEEECCCCCcccHHHHHHHHHhcCC---eEEecCCC
Confidence                  126677888888888874 5555444344455555666666664   35565544

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=85.86  E-value=11  Score=33.07  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      +..||-.|||. |..+..++.. |.. +++++.++..++.+.+....-.++...  .. ......+|+|+....-     
T Consensus        98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~d~vl~~~~~-----  169 (277)
T cd08255          98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADT--AD-EIGGRGADVVIEASGS-----  169 (277)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccc--hh-hhcCCCCCEEEEccCC-----
Confidence            56788888764 4454545544 666 999999999888777653110111110  00 0123468988853111     


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                  ...+....++|+++|.++..
T Consensus       170 ------------~~~~~~~~~~l~~~g~~~~~  189 (277)
T cd08255         170 ------------PSALETALRLLRDRGRVVLV  189 (277)
T ss_pred             ------------hHHHHHHHHHhcCCcEEEEE
Confidence                        13456778899999998864

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=85.77  E-value=7.5  Score=35.00  Aligned_cols=87  Identities=24%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|.=||+|.  |.++..|.+.|++|+++|.++..++.+..... +.....+.    . .....|+||..-..        
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-~~~~~~~~----~-~~~~aDlVilavp~--------   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-VDEASTDL----S-LLKDCDLVILALPI--------   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-cccccCCH----h-HhcCCCEEEEcCCH--------
Confidence            466678875  44666777788999999999998888765421 11111111    1 12457888865322        


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                            .....++..+...++++. ++..+
T Consensus        68 ------~~~~~~~~~l~~~l~~~~-ii~d~   90 (279)
T PRK07417         68 ------GLLLPPSEQLIPALPPEA-IVTDV   90 (279)
T ss_pred             ------HHHHHHHHHHHHhCCCCc-EEEeC
Confidence                  224567788888887764 44444

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=85.74  E-value=1.3  Score=47.51  Aligned_cols=102  Identities=14%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +..+||+|+|+-.=...+......|+.||+-|...-.+- -...-+++..|....--.....+|.+.|+.+|..-|-+. 
T Consensus       823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~-w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a-  900 (1289)
T PF06016_consen  823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNC-WNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASA-  900 (1289)
T ss_dssp             C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCC-CSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHC-
T ss_pred             cceEEEccCCccceeeeccCCCCceEEEecCCcccccch-hhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcC-
Confidence            579999999987766666677789999999774311100 012357899997553334467899999999998765422 


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCc--EEEEE
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGA--RAVFQ  160 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG--~lv~~  160 (291)
                           ...+...++.+.+.+++.|  ++++|
T Consensus       901 -----~~tl~~~l~~~l~~~~~~~~~~l~lQ  926 (1289)
T PF06016_consen  901 -----NVTLDAGLQQFLSQCVQANVKRLWLQ  926 (1289)
T ss_dssp             -----T--HHHHHHHHHHHHHCTT-SEEEEE
T ss_pred             -----CCcHHHHHHHHHHHHHhCCccEEEEE
Confidence                 1227788888888888877  45554

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.37  E-value=3.5  Score=36.14  Aligned_cols=67  Identities=22%  Similarity=0.343  Sum_probs=48.1

Q ss_pred             eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEEC
Q 043626           54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISI  120 (291)
Q Consensus        54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~  120 (291)
                      .++=+|||. | .++..|.+.|+.|+.+|.++..++...........+++|..+.-   ...-..+|.+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence            577788886 3 36677778899999999999988775554455678888875421   1224678988864

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=85.16  E-value=11  Score=34.26  Aligned_cols=120  Identities=18%  Similarity=0.085  Sum_probs=68.9

Q ss_pred             eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|-=||+|. | .....|++.|+.+++.|.++...+.+.+..  +. ...+..+ +.-.....|+|++.-.-.       
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g--~~-~~~~~~e-~~~~~~~~dvvi~~v~~~-------   70 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG--AT-GADSLEE-LVAKLPAPRVVWLMVPAG-------   70 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC--Ce-ecCCHHH-HHhhcCCCCEEEEEecCC-------
Confidence            455677775 2 255666777899999999998877665432  11 1112111 000001247777531111       


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                            .....++..+...|++|. +++......+.....+...+...|.   .++|-|.+..
T Consensus        71 ------~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~---~~~dapvsG~  123 (301)
T PRK09599         71 ------EITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKGI---HFVDVGTSGG  123 (301)
T ss_pred             ------cHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcCC---EEEeCCCCcC
Confidence                  114566677778888764 5555545555566667777777764   4567776643

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=85.07  E-value=4.1  Score=38.58  Aligned_cols=119  Identities=22%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCch----hHHHHHHc--C---CeEEEEeC----CHHHHHHHHhcCCc------c
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGL----SGETLSEN--G---HQWIGLDI----SQSMLNIALEREVE------G   96 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~----~~~~L~~~--g---~~v~gvDi----s~~ml~~a~~~~~~------~   96 (291)
                      .-+.+++.+.-..   .-+|+|+|.|.|.    +...|+.+  |   ..++||+.    +..-++.+.++..+      +
T Consensus        98 aNqaIleA~~g~~---~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv  174 (374)
T PF03514_consen   98 ANQAILEAFEGER---RVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV  174 (374)
T ss_pred             hhHHHHHHhccCc---ceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc
Confidence            3445666665544   6799999999996    44455554  2   58999999    77777666655432      2


Q ss_pred             --eEEE---ccCCC----CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           97 --DLLL---GDMGQ----GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        97 --~~~~---~D~~~----~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                        +|..   .++..    .+...++..=+|-|.+.+||+.+......+|.   ..+|. ..+.|+|.-.+++.-
T Consensus       175 ~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~---~~~L~-~ir~L~P~vvv~~E~  244 (374)
T PF03514_consen  175 PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPR---DAFLR-VIRSLNPKVVVLVEQ  244 (374)
T ss_pred             cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchH---HHHHH-HHHhcCCCEEEEEee
Confidence              2222   22211    11223344334445666789876544444443   34554 445779996666643

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=84.99  E-value=9.2  Score=34.56  Aligned_cols=118  Identities=15%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHH
Q 043626           65 SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFF  144 (291)
Q Consensus        65 ~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l  144 (291)
                      +...|.+.|+.+++.|.++..++...+...   ....+..+    .....|+||+.-..             ...+..++
T Consensus        11 mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---~~~~s~~~----~~~~advVil~vp~-------------~~~~~~v~   70 (288)
T TIGR01692        11 MAANLLKAGHPVRVFDLFPDAVEEAVAAGA---QAAASPAE----AAEGADRVITMLPA-------------GQHVISVY   70 (288)
T ss_pred             HHHHHHhCCCeEEEEeCCHHHHHHHHHcCC---eecCCHHH----HHhcCCEEEEeCCC-------------hHHHHHHH
Confidence            445555668999999999988776654321   11112111    12345877754111             01134444


Q ss_pred             ---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC---CCcEEEEEeeCC
Q 043626          145 ---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK---SRKEFLVLTCGP  206 (291)
Q Consensus       145 ---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~---~~~~~l~l~~g~  206 (291)
                         ..+...+++| .+++.+....+.....+.+.+.+.|.   .+++-|-+..   +..-.+.++.|.
T Consensus        71 ~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~---~~vdaPv~Gg~~~a~~g~l~~~~gg  134 (288)
T TIGR01692        71 SGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGA---VFMDAPVSGGVGGARAGTLTFMVGG  134 (288)
T ss_pred             cCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCC---cEEECCCCCCHHHHhhCcEEEEECC
Confidence               4566666665 45555555666777778888877764   4567666543   223345555554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=84.91  E-value=9.9  Score=35.33  Aligned_cols=92  Identities=17%  Similarity=0.125  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.+||-+|+|. |..+..+++. |..+++++.++.....+.+...--.++...-...+......+|+|+-...-      
T Consensus       181 g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~------  254 (357)
T PLN02514        181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPV------  254 (357)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCc------
Confidence            56788777653 4444445544 677888888887665554433211122111000010011247887743110      


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                 ...+..+.++|+++|+++..
T Consensus       255 -----------~~~~~~~~~~l~~~G~iv~~  274 (357)
T PLN02514        255 -----------FHPLEPYLSLLKLDGKLILM  274 (357)
T ss_pred             -----------hHHHHHHHHHhccCCEEEEE
Confidence                       13556677899999998863

>PRK08267 short chain dehydrogenase; Provisional

Probab=84.69  E-value=9.6  Score=33.28  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=46.9

Q ss_pred             eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CcceEEEccCCCCCC----CC------CCcccEEE
Q 043626           54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE--VEGDLLLGDMGQGLG----LR------PGVVDGAI  118 (291)
Q Consensus        54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~--~~~~~~~~D~~~~~~----~~------~~~fD~Vi  118 (291)
                      +||-.|++.|.   ++..|++.|..|+.++.++..++......  ..+.++.+|+.+.-.    +.      .+.+|+||
T Consensus         3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi   82 (260)
T PRK08267          3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF   82 (260)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence            57888876543   44555667899999999988776665443  246788889865211    00      35789999


Q ss_pred             ECCch
Q 043626          119 SISAV  123 (291)
Q Consensus       119 s~~~l  123 (291)
                      .+...
T Consensus        83 ~~ag~   87 (260)
T PRK08267         83 NNAGI   87 (260)
T ss_pred             ECCCC
Confidence            87654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=84.66  E-value=11  Score=33.86  Aligned_cols=93  Identities=20%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcc---eEEE-ccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEG---DLLL-GDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~---~~~~-~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +|+=||||. | .++..|++.|+.|+.++-++..++...+....+   .... ........ ....+|+|+..---+   
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~~---   77 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKAY---   77 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEecccc---
Confidence            578889886 2 355666777899999999777776665543211   1100 00001011 125789888542211   


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                                 .+..++..+...+.++..+++..
T Consensus        78 -----------~~~~~~~~l~~~l~~~~~iv~~~  100 (304)
T PRK06522         78 -----------QLPAALPSLAPLLGPDTPVLFLQ  100 (304)
T ss_pred             -----------cHHHHHHHHhhhcCCCCEEEEec
Confidence                       15677888888888877666543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=84.58  E-value=4.1  Score=39.62  Aligned_cols=122  Identities=15%  Similarity=0.097  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCc--ceEEEccCCCCCC---------CCCCcccEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREVE--GDLLLGDMGQGLG---------LRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~~~~~---------~~~~~fD~Vi  118 (291)
                      ...+|-+|-|+|.+...|.-. . ..+++|++.|.|++.|...+.-  -+-...-|..+++         -....||+++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~  375 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM  375 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence            568899999999999888765 3 7899999999999999876531  0000011111221         1345788877


Q ss_pred             ECCchhhhcccc-ccCCch--HHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHH
Q 043626          119 SISAVQWLCNAD-KASHEP--RLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMR  178 (291)
Q Consensus       119 s~~~l~~l~~~~-~~~~~p--~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~  178 (291)
                      .-     +..++ ..-..|  .---..++..+...|.|.|.+++...+.+.....++...+.+
T Consensus       376 ~d-----vds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~  433 (482)
T KOG2352|consen  376 VD-----VDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK  433 (482)
T ss_pred             EE-----CCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence            42     01111 001112  222367888999999999999998877776665555554443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=84.57  E-value=13  Score=34.02  Aligned_cols=96  Identities=16%  Similarity=0.043  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-Cc----ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALERE-VE----GDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      .++|+=||||.  |.++..|++.|+.|+.++-+...++..++.. ..    ............+...+.||+||..-=-+
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~   81 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY   81 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence            35799999996  4577888888999999999876665554321 11    11011011001111235789888531111


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +              +...+..+...+.++..+++--
T Consensus        82 ~--------------~~~al~~l~~~l~~~t~vv~lQ  104 (305)
T PRK05708         82 D--------------AEPAVASLAHRLAPGAELLLLQ  104 (305)
T ss_pred             h--------------HHHHHHHHHhhCCCCCEEEEEe
Confidence            1              4577888999999998776543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.84  E-value=9.7  Score=32.61  Aligned_cols=109  Identities=14%  Similarity=0.035  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCC---------CCCcccE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGL---------RPGVVDG  116 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~---------~~~~fD~  116 (291)
                      +.+||-.|++.|.   +...+++.|..|++++-++.-+..+....   ..+.++.+|+.+.-..         ..+.+|.
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   84 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG   84 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4589999986543   33444566899999999887665442221   2357778887542100         1245688


Q ss_pred             EEECCchhhhcccccc------CCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKA------SHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~------~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++.+............      ..........+++.+...++++|.+++.
T Consensus        85 ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~  134 (238)
T PRK05786         85 LVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV  134 (238)
T ss_pred             EEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence            8876543221100000      0000011223466666777888887764

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.41  E-value=17  Score=32.71  Aligned_cols=84  Identities=14%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCCchhHHHHH----HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLS----ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~----~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+||=.|+  |.++..+.    ..|..+++++.++...+.+++...  .... +....  .....+|+|+....-    
T Consensus       156 g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~--~~~~-~~~~~--~~~~~~d~vid~~g~----  224 (319)
T cd08242         156 GDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGV--ETVL-PDEAE--SEGGGFDVVVEATGS----  224 (319)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC--cEEe-Ccccc--ccCCCCCEEEECCCC----
Confidence            568888875  45555543    347789999999999988876322  1111 11111  223568998854110    


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                                   ...+..+.++|+++|.+++
T Consensus       225 -------------~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         225 -------------PSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             -------------hHHHHHHHHHhhcCCEEEE
Confidence                         1345677889999999987

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PLN02827 Alcohol dehydrogenase-like

Probab=83.26  E-value=10  Score=35.70  Aligned_cols=91  Identities=21%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-----CCCCC-CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-----MGQGL-GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-----~~~~~-~~~~~~fD~Vis~~~  122 (291)
                      +..||-+|+|+ |.....+++. |. .++++|.++..++.+++.... .++...     ....+ ....+.+|+|+-...
T Consensus       194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  272 (378)
T PLN02827        194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADYSFECVG  272 (378)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence            67888888754 4444444443 65 689999999988888664332 122111     00000 011235898885422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      -                 ...+....++|++| |++++.
T Consensus       273 ~-----------------~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        273 D-----------------TGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             C-----------------hHHHHHHHHhhccCCCEEEEE
Confidence            1                 13456678888998 999863

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=83.01  E-value=15  Score=33.16  Aligned_cols=90  Identities=17%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----CCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQGL----GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~~~~~~fD~Vis~~~l~  124 (291)
                      +..||-+|+|. |.....++.. |.. +++++.++...+.+.+.... .++..+- ...    ......+|+|+....- 
T Consensus       160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~vd~v~~~~~~-  236 (334)
T cd08234         160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT-ETVDPSR-EDPEAQKEDNPYGFDVVIEATGV-  236 (334)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe-EEecCCC-CCHHHHHHhcCCCCcEEEECCCC-
Confidence            67888888642 3343334443 655 89999999988887654322 2222111 110    1123568999864211 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                      ...+..+.++|+++|+++..
T Consensus       237 ----------------~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         237 ----------------PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             ----------------hHHHHHHHHHHhcCCEEEEE
Confidence                            14566778999999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=82.82  E-value=13  Score=34.60  Aligned_cols=91  Identities=18%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEE-cc----CCCCC-CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLL-GD----MGQGL-GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~-~D----~~~~~-~~~~~~fD~Vis~~~  122 (291)
                      +..||=+|||. |..+..+++. |. .|+++|.++..++.+.+.... .++. .+    +...+ ....+.+|+|+-...
T Consensus       186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  264 (368)
T TIGR02818       186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT-DCVNPNDYDKPIQEVIVEITDGGVDYSFECIG  264 (368)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC-eEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            67888888864 4455555554 65 799999999999988765432 1121 10    00000 011235888885321


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      -                 ...+....++|++| |++++.
T Consensus       265 ~-----------------~~~~~~~~~~~~~~~G~~v~~  286 (368)
T TIGR02818       265 N-----------------VNVMRAALECCHKGWGESIII  286 (368)
T ss_pred             C-----------------HHHHHHHHHHhhcCCCeEEEE
Confidence            1                 13466677889886 988754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=82.57  E-value=7.9  Score=36.93  Aligned_cols=110  Identities=23%  Similarity=0.287  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC--------C-C-----CCCCCccc
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ--------G-L-----GLRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--------~-~-----~~~~~~fD  115 (291)
                      ..+|-=||-|- |+ ++..++.+|..|+|+||++..++....-...  ...-+...        + +     +......|
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~--i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d   86 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESY--IEEPDLDEVVKEAVESGKLRATTDPEELKECD   86 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcce--eecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence            35677777664 54 4455567799999999999988876543221  11111100        0 0     11111445


Q ss_pred             EEE-ECCchhhhccccccCCchHHH-HHHHHHHHHHhccCCcEEEEE--EcCCChHHH
Q 043626          116 GAI-SISAVQWLCNADKASHEPRLR-LKAFFGSLYRCLARGARAVFQ--IYPESVAQR  169 (291)
Q Consensus       116 ~Vi-s~~~l~~l~~~~~~~~~p~~~-l~~~l~~l~~~LkpgG~lv~~--~~~~~~~~~  169 (291)
                      ++| |..+      +-....+|... +....+.+..+|++|-.+++.  +||...+++
T Consensus        87 v~iI~VPT------Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v  138 (436)
T COG0677          87 VFIICVPT------PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEV  138 (436)
T ss_pred             EEEEEecC------CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHH
Confidence            444 3222      11222344433 477888999999999999984  666654443

>PRK08265 short chain dehydrogenase; Provisional

Probab=82.49  E-value=8.3  Score=33.91  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCcceEEEccCCCCCCC---------CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER-EVEGDLLLGDMGQGLGL---------RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~-~~~~~~~~~D~~~~~~~---------~~~~fD~Vi  118 (291)
                      +..+|=.|+++|.   +...|++.|..|+.+|.++..++..... ...+.++.+|+.+.-..         ..+..|++|
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv   85 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV   85 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            4578888865543   3445556789999999988755444333 23467788888652110         124689999


Q ss_pred             ECCch
Q 043626          119 SISAV  123 (291)
Q Consensus       119 s~~~l  123 (291)
                      .+...
T Consensus        86 ~~ag~   90 (261)
T PRK08265         86 NLACT   90 (261)
T ss_pred             ECCCC
Confidence            87543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.48  E-value=9.2  Score=36.65  Aligned_cols=69  Identities=16%  Similarity=0.112  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~  120 (291)
                      ..+|+=+|||. |. ....|.+.|+.++.+|.++..++.+.+......++.+|..+.-   ......+|.|++.
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~  304 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL  304 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence            46888888854 21 3334445589999999999998888776666778888875432   1234578888764

>PRK12829 short chain dehydrogenase; Provisional

Probab=82.33  E-value=4.9  Score=35.08  Aligned_cols=72  Identities=21%  Similarity=0.234  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCC----C-----CCCcccEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLG----L-----RPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~----~-----~~~~fD~V  117 (291)
                      +.+||-.|++.|.   +...|++.|+.|++++-++..++.......  .+.++.+|+.+.-.    +     ..+.+|+|
T Consensus        11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   90 (264)
T PRK12829         11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVL   90 (264)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            5689988876443   233445668999999998877665444333  24677788754211    0     01468999


Q ss_pred             EECCch
Q 043626          118 ISISAV  123 (291)
Q Consensus       118 is~~~l  123 (291)
                      |.+...
T Consensus        91 i~~ag~   96 (264)
T PRK12829         91 VNNAGI   96 (264)
T ss_pred             EECCCC
Confidence            976543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=82.14  E-value=1.1  Score=41.10  Aligned_cols=95  Identities=13%  Similarity=0.055  Sum_probs=61.3

Q ss_pred             HhCCCCCCCCCeEEEEcCCCchhHH-HHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCCCCCcc
Q 043626           43 LLALPDDGVPRLLLDIGCGSGLSGE-TLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGsG~~~~-~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~~~~~f  114 (291)
                      .+.....  +..|+|+=+|-|.++. .+...| ..|+++|++|..++..+.+...      +.++.+|- . .+-+....
T Consensus       188 v~~~sc~--~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~-R-~~~~~~~A  263 (351)
T KOG1227|consen  188 VLNTSCD--GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN-R-NPKPRLRA  263 (351)
T ss_pred             hhhcccc--cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc-c-ccCccccc
Confidence            3444443  5689999999999998 666777 7999999999999887765432      23444443 2 23335677


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR  156 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~  156 (291)
                      |-|..    .-|+.+.           .-...+.++|+|.|-
T Consensus       264 drVnL----GLlPSse-----------~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  264 DRVNL----GLLPSSE-----------QGWPTAIKALKPEGG  290 (351)
T ss_pred             hheee----ccccccc-----------cchHHHHHHhhhcCC
Confidence            77773    3344422           223346677787543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.94  E-value=12  Score=33.78  Aligned_cols=39  Identities=28%  Similarity=0.310  Sum_probs=29.8

Q ss_pred             eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      +|.=||+|. | .++..|+..|+.|+.+|.++..++.+.++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~   43 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQE   43 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence            577788875 2 35566667799999999999998887643

>PRK09072 short chain dehydrogenase; Provisional

Probab=81.76  E-value=14  Score=32.35  Aligned_cols=73  Identities=18%  Similarity=0.245  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCcceEEEccCCCCCCC--------CCCcccEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER---EVEGDLLLGDMGQGLGL--------RPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~---~~~~~~~~~D~~~~~~~--------~~~~fD~V  117 (291)
                      +..||=.|+++|.   +...|+++|+.|++++.++..++.....   ...+.++..|+.+.-..        ..+..|++
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l   84 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL   84 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence            4578888877654   4455667799999999988766555432   22466788888542110        02568999


Q ss_pred             EECCchh
Q 043626          118 ISISAVQ  124 (291)
Q Consensus       118 is~~~l~  124 (291)
                      |.+....
T Consensus        85 v~~ag~~   91 (263)
T PRK09072         85 INNAGVN   91 (263)
T ss_pred             EECCCCC
Confidence            9876543

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=81.68  E-value=27  Score=31.94  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCC------C--CCC
Q 043626           42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQG------L--GLR  110 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~------~--~~~  110 (291)
                      +...+.+   +.+||-.|+|. |..+..+++. |.. +++++.++...+.+.+.... .++..+-...      +  ...
T Consensus       156 ~~~~~~~---g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~~~~~~~  231 (343)
T cd05285         156 RRAGVRP---GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGAT-HTVNVRTEDTPESAEKIAELLG  231 (343)
T ss_pred             HhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc-EEeccccccchhHHHHHHHHhC
Confidence            4444554   56777777654 4444445544 666 89999888888777553211 2222111010      0  112


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ...+|+|+....-                 ...+....++|+++|+++..
T Consensus       232 ~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         232 GKGPDVVIECTGA-----------------ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             CCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            3458999854221                 12566788999999998854

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=81.46  E-value=20  Score=32.43  Aligned_cols=90  Identities=10%  Similarity=0.022  Sum_probs=55.3

Q ss_pred             CCeEEEEcC--CCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGC--GSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGc--GsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l  123 (291)
                      +.+||=.|+  |.|..+..+++. |..+++++.++...+.+++.... .++..+-...+     ....+.+|+|+-... 
T Consensus       139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G-  216 (325)
T TIGR02825       139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFD-VAFNYKTVKSLEETLKKASPDGYDCYFDNVG-  216 (325)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC-EEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence            678988885  345566666654 78899999999888888654321 22221110001     111246888885311 


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ...+..+.++|+++|+++..
T Consensus       217 -----------------~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       217 -----------------GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             -----------------HHHHHHHHHHhCcCcEEEEe
Confidence                             12356788999999999953

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=81.35  E-value=16  Score=34.04  Aligned_cols=91  Identities=21%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEc-c----CCCCC-CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLG-D----MGQGL-GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~-D----~~~~~-~~~~~~fD~Vis~~~  122 (291)
                      +..||=+|+|. |..+..+++. |. .++++|.++..++.+++.... .++.. +    +...+ ....+.+|+|+-...
T Consensus       187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g  265 (368)
T cd08300         187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG  265 (368)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC-EEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence            67888888753 4444444443 66 799999999999888654322 12211 1    00000 011236898885311


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      -                 ...+....++|+++ |++++.
T Consensus       266 ~-----------------~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         266 N-----------------VKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             C-----------------hHHHHHHHHhhccCCCeEEEE
Confidence            0                 13566678889887 888864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=81.32  E-value=4.1  Score=38.72  Aligned_cols=49  Identities=12%  Similarity=0.072  Sum_probs=36.5

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE   91 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~   91 (291)
                      -++.|.+.+   +.+||-|..|-.+....|+..-..|++||+|+..+....-
T Consensus        27 D~~aL~i~~---~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleL   75 (380)
T PF11899_consen   27 DMEALNIGP---DDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLEL   75 (380)
T ss_pred             HHHHhCCCC---CCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHH
Confidence            456777776   6799999666555555555555999999999998776644

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK05872 short chain dehydrogenase; Provisional

Probab=81.18  E-value=16  Score=32.82  Aligned_cols=72  Identities=14%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCC---------CCCCcccE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLG---------LRPGVVDG  116 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~---------~~~~~fD~  116 (291)
                      +..||-.|+++|.   +...|++.|..|+.++.++..++...+...   .+..+.+|+.+.-.         -..+.+|+
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   88 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV   88 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4688888876654   445555678999999999887766544332   23344578754211         01257899


Q ss_pred             EEECCch
Q 043626          117 AISISAV  123 (291)
Q Consensus       117 Vis~~~l  123 (291)
                      +|.+..+
T Consensus        89 vI~nAG~   95 (296)
T PRK05872         89 VVANAGI   95 (296)
T ss_pred             EEECCCc
Confidence            9988665

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=81.13  E-value=19  Score=30.15  Aligned_cols=75  Identities=16%  Similarity=0.323  Sum_probs=47.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCC--------CCCCCCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQG--------LGLRPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~--------~~~~~~~  113 (291)
                      ...|+.||||-=.....+...  +..|+-+|. |.+++.-++...        +..++..|+.+.        ..|.++.
T Consensus        79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~  157 (183)
T PF04072_consen   79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR  157 (183)
T ss_dssp             ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred             CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence            348999999998888888874  578999998 445544433322        146888998641        1355667


Q ss_pred             ccEEEECCchhhhc
Q 043626          114 VDGAISISAVQWLC  127 (291)
Q Consensus       114 fD~Vis~~~l~~l~  127 (291)
                      .-++++-.++.|+.
T Consensus       158 ptl~i~Egvl~Yl~  171 (183)
T PF04072_consen  158 PTLFIAEGVLMYLS  171 (183)
T ss_dssp             EEEEEEESSGGGS-
T ss_pred             CeEEEEcchhhcCC
Confidence            77888889999984

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=80.92  E-value=14  Score=35.21  Aligned_cols=68  Identities=24%  Similarity=0.093  Sum_probs=44.7

Q ss_pred             CeEEEEcCCC-chhH-HHHHHcC-CeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCC--CCCcccEEEEC
Q 043626           53 RLLLDIGCGS-GLSG-ETLSENG-HQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGL--RPGVVDGAISI  120 (291)
Q Consensus        53 ~~VLDiGcGs-G~~~-~~L~~~g-~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~--~~~~fD~Vis~  120 (291)
                      ..||=||||. |... ..|+..+ ..|+..|-|...++.+.... ..++.+..|+.+.-..  --..+|+||+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            4789999954 4322 3334556 89999999988887776553 4677888887442110  12345998865

>PRK06701 short chain dehydrogenase; Provisional

Probab=80.85  E-value=9.3  Score=34.40  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHH-HHHHHHh----cCCcceEEEccCCCCCC----CC-----CCcc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQS-MLNIALE----REVEGDLLLGDMGQGLG----LR-----PGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~-ml~~a~~----~~~~~~~~~~D~~~~~~----~~-----~~~f  114 (291)
                      +..||-.|++.|.   ++..|+++|..|+.++.++. .++....    ...++.++.+|+.+.-.    +.     -+.+
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i  125 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL  125 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4578888876654   44555567899999887642 2222111    12245678888854211    10     1468


Q ss_pred             cEEEECCchhhhccc--cccC-------CchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNA--DKAS-------HEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~--~~~~-------~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+||.+.........  +...       .........+++.+...++++|.+++.
T Consensus       126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i  180 (290)
T PRK06701        126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT  180 (290)
T ss_pred             CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            998876543211100  0000       000111244455666666777877763

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.78  E-value=12  Score=34.21  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--------ceEEEccCC-CCC-------CCCCCccc
Q 043626           53 RLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--------GDLLLGDMG-QGL-------GLRPGVVD  115 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--------~~~~~~D~~-~~~-------~~~~~~fD  115 (291)
                      ..|+-+|||-=.-...+-.. +..|+-+|. |..++.=.+.+.+        ..++..|+. +..       .|....-=
T Consensus        94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt  172 (297)
T COG3315          94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT  172 (297)
T ss_pred             cEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence            58999999876666655554 588999998 5565554444332        467788886 222       24455666


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ++|+-.++.+|         |.....++|..+...+.||..+++...
T Consensus       173 ~~iaEGLl~YL---------~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         173 LWIAEGLLMYL---------PEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             EEEeccccccC---------CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            78888999998         445688999999999999998888763

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=80.68  E-value=15  Score=34.89  Aligned_cols=39  Identities=31%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             eEEEEcCCC-chhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           54 LLLDIGCGS-GLSGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        54 ~VLDiGcGs-G~~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      +|-=||+|. |.-...+...|+.|+++|+++..++.+.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g   41 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR   41 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence            355567773 443333333589999999999999888764

>PLN02494 adenosylhomocysteinase

Probab=80.54  E-value=13  Score=36.33  Aligned_cols=113  Identities=11%  Similarity=0.004  Sum_probs=62.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCC-chhHH-HHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGS-GLSGE-TLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGs-G~~~~-~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      .+.++...+..-.  +.+|+=+|+|. |.... .+...|..|+++|+++.-...+.....  .++  ++.+.+    ...
T Consensus       241 ~d~i~r~t~i~La--GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~--~vv--~leEal----~~A  310 (477)
T PLN02494        241 PDGLMRATDVMIA--GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGY--QVL--TLEDVV----SEA  310 (477)
T ss_pred             HHHHHHhcCCccC--CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC--eec--cHHHHH----hhC
Confidence            3444444444222  67999999985 43222 223347899999999865434433211  111  221211    356


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHH
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGA  175 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~  175 (291)
                      |+|++...-.+                -+.......|++||.++..-.....-....+...
T Consensus       311 DVVI~tTGt~~----------------vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        311 DIFVTTTGNKD----------------IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CEEEECCCCcc----------------chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            98886322111                2346778899999999876544444444444443

>PRK10083 putative oxidoreductase; Provisional

Probab=80.46  E-value=12  Score=34.15  Aligned_cols=91  Identities=18%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-c-CC-eEEEEeCCHHHHHHHHhcCCcceEEEc---cCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-N-GH-QWIGLDISQSMLNIALEREVEGDLLLG---DMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~---D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+||=+|+|. |.....+++ . |. .++++|.++..++.+.+.... .++..   ++.+.+.-....+|+|+....- 
T Consensus       161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~g~~~d~vid~~g~-  238 (339)
T PRK10083        161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALEEKGIKPTLIIDAACH-  238 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHhcCCCCCCEEEECCCC-
Confidence            66888888653 334444555 3 74 688999999988888764432 11111   1101111011234676643210 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                      ...+....++|+++|+++..
T Consensus       239 ----------------~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        239 ----------------PSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             ----------------HHHHHHHHHHhhcCCEEEEE
Confidence                            13466778899999998864

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=80.33  E-value=16  Score=33.49  Aligned_cols=91  Identities=15%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCC--CC-C-CCCCccc-EEEECCch
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQ--GL-G-LRPGVVD-GAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~~-~-~~~~~fD-~Vis~~~l  123 (291)
                      +.+||=+|||+ |..+..+++. |.. +++++.++..++.+++.... .++..+-..  .+ . .....+| +|+-... 
T Consensus       161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G-  238 (347)
T PRK10309        161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM-QTFNSREMSAPQIQSVLRELRFDQLILETAG-  238 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-eEecCcccCHHHHHHHhcCCCCCeEEEECCC-
Confidence            66888888754 4444444443 654 79999999988887653321 222111000  00 0 1123567 5553211 


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                      -...+....++|++||++++.
T Consensus       239 ----------------~~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        239 ----------------VPQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             ----------------CHHHHHHHHHHhhcCCEEEEE
Confidence                            124566788999999998864

>PRK07063 short chain dehydrogenase; Provisional

Probab=80.15  E-value=14  Score=32.27  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCC---------CCCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGL---------RPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~---------~~~~  113 (291)
                      +..||-.|+++|.   +...|++.|..|+.++.++..++......      ..+.++.+|+.+.-..         ..+.
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   86 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP   86 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4588988886654   44556677899999999887766554332      2356788888542111         1257


Q ss_pred             ccEEEECCch
Q 043626          114 VDGAISISAV  123 (291)
Q Consensus       114 fD~Vis~~~l  123 (291)
                      +|++|.+...
T Consensus        87 id~li~~ag~   96 (260)
T PRK07063         87 LDVLVNNAGI   96 (260)
T ss_pred             CcEEEECCCc
Confidence            8999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-16
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-15
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	7e-15
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-14
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-14
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-14
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-13
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-13
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-13
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-13
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-13
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-12
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-12
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-12
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-12
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	3e-12
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	4e-12
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-12
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	2e-11
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	8e-11
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	9e-11
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-10
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-10
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-10
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	8e-10
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	4e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	7e-08
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-07
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	4e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-07
3cc8_A	230	Putative methyltransferase; structural genomics, j	5e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-07
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	6e-07
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	6e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	8e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	9e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-06
2p7i_A	250	Hypothetical protein; putative methyltransferase,	2e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	3e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	3e-06
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	3e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	1e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-05
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	6e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	2e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	6e-04

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 15/163 (9%)

Query: 38  ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGD 97
             A  + A+   G    +LD GCG G  G  LS+ GH  +G D+   +++ A +   E  
Sbjct: 35  GEARLIDAMAPRGAK--ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEAR 92

Query: 98  LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARA 157
            ++GD+     +     D  +S   V      D          +    +++R L    RA
Sbjct: 93  WVVGDL-SVDQISETDFDLIVSAGNVMGFLAED--------GREPALANIHRALGADGRA 143

Query: 158 VFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFL 200
           V        A R  + G  +      G+ ++    S   K F+
Sbjct: 144 VI----GFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFV 182

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 74.1 bits (182), Expect = 5e-16
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 13/143 (9%)

Query: 17  DTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW 76
            +      +    +          +E  A    GV  ++LD+G G+G     L+  GHQ 
Sbjct: 10  SSPTFDAEALLGTVISAEDPDRVLIEPWA---TGVDGVILDVGSGTGRWTGHLASLGHQI 66

Query: 77  IGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEP 136
            GL+ +  ++ +A +         G +   L   P    G ++  ++  +          
Sbjct: 67  EGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHM---------G 116

Query: 137 RLRLKAFFGSLYRCLARGARAVF 159
              L     +L   +  G   + 
Sbjct: 117 PGELPDALVALRMAVEDGGGLLM 139

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 17/152 (11%)

Query: 14  FYDDTEARK-YTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN 72
            YD  +    Y+   R I+     +E    L A+  +     ++D+GCG G       E+
Sbjct: 6   IYDQPDFFAGYSQLGRSIEGLDGAAEWP-ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH 64

Query: 73  GHQW-IGLDISQSMLNIALEREVEG--DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129
           G  + +GLD+S+ ML  A     +        D+ + L L     D A S  A+ ++ + 
Sbjct: 65  GASYVLGLDLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLALHYVED- 122

Query: 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
                     +   F ++++ L+ G   VF  
Sbjct: 123 ----------VARLFRTVHQALSPGGHFVFST 144

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 71.0 bits (174), Expect = 7e-15
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 16/190 (8%)

Query: 17  DTEARKYTSSSRIIDIQ-AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQ 75
           D  A  Y S  +  DIQ  ++     ++L    +     +L+ G G+G     L   G  
Sbjct: 10  DEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT 69

Query: 76  WIGLDISQSMLNIALEREVEG-DLLLGDMGQGLGLR-PGVVDGAISISAVQWLCNADKAS 133
             G++ S+ M  IA E+  +   +  GD    L    P  +D  +S  A   L + +K  
Sbjct: 70  VYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFEVPTSIDTIVSTYAFHHLTDDEKN- 125

Query: 134 HEPRLRLKAFFGSLYRCLARGARAVFQ-IYPESVAQRELILGAAMRAGFAGGVVVDYPHS 192
                          + L +G + VF           +  + AA + GF           
Sbjct: 126 --------VAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEY 177

Query: 193 SKSRKEFLVL 202
                    +
Sbjct: 178 YTRIPVMQTI 187

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 15  YDDTE-ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
           YDD     +Y+   R  +      E   EL  +  D   + +LD+GCG G      +E+G
Sbjct: 8   YDDKHFFEQYSQMPRSKEGLKAAGEWH-ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG 66

Query: 74  -HQWIGLDISQSMLNIALEREVEG--DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD 130
             + +G+D+S+ ML  A  +            +   + + P   +  +S  A+ ++ + D
Sbjct: 67  AKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIED-IAIEPDAYNVVLSSLALHYIASFD 125

Query: 131 KASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
                           +Y  L      +F +
Sbjct: 126 DI-----------CKKVYINLKSSGSFIFSV 145

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 40  ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLL 99
             +LL L +      +LD+GCG+G   E ++++G + +G D + +M+  A +        
Sbjct: 46  GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFD 105

Query: 100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
           + D  +   +    +D   S + + W+   + A             S+++ L  G R V 
Sbjct: 106 VADA-RNFRV-DKPLDAVFSNAMLHWVKEPEAA-----------IASIHQALKSGGRFVA 152

Query: 160 Q 160
           +
Sbjct: 153 E 153

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           M     LI     +Y    A +Y  ++ +  + +        L A    G    +L++  
Sbjct: 1   MTTSHGLIESQLSYYRAR-ASEY-DATFVPYMDSAAPAALERLRAGNIRGD---VLELAS 55

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALEREVEG-DLLLGDMGQGLGLRP-GVVDGAI 118
           G+G     LS    +   LD S  M+  A    ++  +    D+       P    D   
Sbjct: 56  GTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD---WTPDRQWDAVF 112

Query: 119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
               +  +         P  R +AF+ S+   +A G    F
Sbjct: 113 FAHWLAHV---------PDDRFEAFWESVRSAVAPGGVVEF 144

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 22/159 (13%)

Query: 40  ALELLALPDDGVPRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREVEGD 97
           A +LLA           D+GCG G S E L++    +   G+D    ML  A +R    +
Sbjct: 22  ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81

Query: 98  LLLGDMGQGLGLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR 156
               D+      +P    D   + +  QW+ +             A    L   L  G  
Sbjct: 82  FGKADLAT---WKPAQKADLLYANAVFQWVPD-----------HLAVLSQLMDQLESGGV 127

Query: 157 AVFQIY-----PESVAQRELILGAAMRAGFAGGVVVDYP 190
              Q+      P  +A  E   G   +  F+GG +   P
Sbjct: 128 LAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKP 166

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 19/143 (13%)

Query: 17  DTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW 76
           ++  ++Y S +R+ DI+       + LL LP      ++ DIG G+G     L+  G   
Sbjct: 6   NSIGKQY-SQTRVPDIRIV--NAIINLLNLPKG---SVIADIGAGTGGYSVALANQGLFV 59

Query: 77  IGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEP 136
             ++ S  M   A+    + +   G   + L L    VDG ISI A+    + +K+  E 
Sbjct: 60  YAVEPSIVMRQQAVVHP-QVEWFTGY-AENLALPDKSVDGVISILAIHHFSHLEKSFQE- 116

Query: 137 RLRLKAFFGSLYRCLARGARAVF 159
                     + R +  G   + 
Sbjct: 117 ----------MQRIIRDGTIVLL 129

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 20/167 (11%)

Query: 1   MANRPELIAPPEIFYDDTEARKY----TSSSRIIDIQAKLSERALELLALPDDGVPRLLL 56
           MA+      P   +  +  A  Y        +    +A      +   +         LL
Sbjct: 1   MAHSSATAGPQADYSGEI-AELYDLVHQGKGKDYHREAADLAALVRRHSPK----AASLL 55

Query: 57  DIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG 116
           D+ CG+G+    L+++     GL++S  ML IA  R  +  L  GDM +   L       
Sbjct: 56  DVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDM-RDFSL-GRRFSA 113

Query: 117 AISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162
              + S++  L    +        L A        +      V + +
Sbjct: 114 VTCMFSSIGHLAGQAE--------LDAALERFAAHVLPDGVVVVEPW 152

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 65.7 bits (160), Expect = 6e-13
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 25/150 (16%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
            Y D  +++Y         + +  E  L         V    LD+ CG G     L + G
Sbjct: 12  TYTDINSQEY-------RSRIETLEPLLMKYMKKRGKV----LDLACGVGGFSFLLEDYG 60

Query: 74  HQWIGLDISQSMLNIALEREVEGDL----LLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129
            + +G+DIS+ M+  A E     +     ++GD  + L       D  I I ++      
Sbjct: 61  FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDSIVHFEPL 119

Query: 130 DKASHEPRLRLKAFFGSLYRCLARGARAVF 159
           +             F  + R L    + + 
Sbjct: 120 EL---------NQVFKEVRRVLKPSGKFIM 140

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 65.6 bits (160), Expect = 7e-13
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 17  DTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW 76
              A+ +  + R   I+++       +L       P  +LD+GCG G     L++ G + 
Sbjct: 18  HQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEA 77

Query: 77  IGLDISQSMLNIALEREVEGDLL--LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASH 134
           +G+D  +++++ A         L     + +         D   +  A+      D    
Sbjct: 78  VGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLH---QD---- 130

Query: 135 EPRLRLKAFFGSLYRCLARGARAVFQI 161
                +     ++   L  G   V Q 
Sbjct: 131 -----IIELLSAMRTLLVPGGALVIQT 152

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 52  PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRP 111
              LLD+ CG+G   E  ++      GL++S+ ML  A +R  +  L  GDM +   L  
Sbjct: 41  ASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDM-RDFRL-G 98

Query: 112 GVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162
                 +S+ S+V +L   +         L A   S    L  G   V + +
Sbjct: 99  RKFSAVVSMFSSVGYLKTTE--------ELGAAVASFAEHLEPGGVVVVEPW 142

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 24/148 (16%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
           F++      + S SR             E     +  V    LD+GCG G     LS  G
Sbjct: 26  FWNQNSQEMWDSGSR------STIIPFFEQYVKKEAEV----LDVGCGDGYGTYKLSRTG 75

Query: 74  HQWIGLDISQSMLNIALEREVEGDL--LLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131
           ++ +G+DIS+ M+    ER    DL  + GD+   L       +  ++I++++W     +
Sbjct: 76  YKAVGVDISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLEWTEEPLR 134

Query: 132 ASHEPRLRLKAFFGSLYRCLARGARAVF 159
           A +E           + R L     A  
Sbjct: 135 ALNE-----------IKRVLKSDGYACI 151

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 52  PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGL 107
               LD+ CG+G   E L         +D+SQ ML+ A  +     ++  L   D+   L
Sbjct: 38  FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI-SNL 96

Query: 108 GLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
            +     D       +  ++ ++D         LK +F ++   L  G   +F I
Sbjct: 97  NI-NRKFDLITCCLDSTNYIIDSDD--------LKKYFKAVSNHLKEGGVFIFDI 142

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 38  ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGD 97
           E  L  +     GV   ++D GCG+G   + L E   +   +DI+   L    E+  +  
Sbjct: 7   EEYLPNIFEGKKGV---IVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-FDSV 62

Query: 98  LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARA 157
           + L D      +    VD  +  ++   + +      E           + R L    R 
Sbjct: 63  ITLSD---PKEIPDNSVDFILFANSFHDMDDKQHVISE-----------VKRILKDDGRV 108

Query: 158 VF 159
           + 
Sbjct: 109 II 110

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 14/111 (12%)

Query: 52  PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRP 111
           P  +LD+G G+G     L E G + + +D S+ ML +A E+ V+ +++     + L    
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-NVVEAKA-EDLPFPS 112

Query: 112 GVVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
           G  +  +++   + ++ N DKA           F  + R L      +  +
Sbjct: 113 GAFEAVLALGDVLSYVENKDKA-----------FSEIRRVLVPDGLLIATV 152

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 23/153 (15%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
           +YD      Y      +  +    E   +  A  +    R +LD+ CG+G+    L+E G
Sbjct: 11  YYDTI----YRRRIERVKAEIDFVEEIFKEDAKRE---VRRVLDLACGTGIPTLELAERG 63

Query: 74  HQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWLCN 128
           ++ +GLD+ + ML +A  +     ++ + L GD+   +       D      S + +   
Sbjct: 64  YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIAF-KNEFDAVTMFFSTIMYFDE 121

Query: 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
            D         L+  F  +   L  G   +   
Sbjct: 122 ED---------LRKLFSKVAEALKPGGVFITDF 145

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 64.2 bits (156), Expect = 5e-12
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 26/201 (12%)

Query: 1   MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGC 60
           +A+  E     + FYD+  A  Y    +  D  ++  E A          V   +L++  
Sbjct: 38  LASVGERGVLCD-FYDEGAADTYRDLIQDADGTSEAREFATRTG-----PVSGPVLELAA 91

Query: 61  GSGLSGETLSENGHQWIGLDISQSMLNIALER--------EVEGDLLLGDMGQGLGLRPG 112
           G G       + G +   L++S S+L    +R             L+ GDM     L   
Sbjct: 92  GMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM-SAFAL-DK 149

Query: 113 VVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQREL 171
                +  S ++  L  AD          +  + S+   L  G + +  +     A+ E 
Sbjct: 150 RFGTVVISSGSINELDEAD---------RRGLYASVREHLEPGGKFLLSLAMSEAAESEP 200

Query: 172 ILGAAMRAGFAGGVVVDYPHS 192
           +       G +G   V +   
Sbjct: 201 LERKQELPGRSGRRYVLHVRH 221

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 42  ELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLL-- 99
               L +  +P  L+D  CG+G   + LS+   + IGLD+S+S L IA +     ++   
Sbjct: 49  RFELLFNPELP--LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYR 106

Query: 100 ---LGDMGQGLGLRPGVVDGAISISAV-QWLCNADKASHEPRLRLKAFFGSLYRCLARGA 155
                   Q   +   + D  I +      +    +              SL   L +  
Sbjct: 107 LLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRE---------LLGQSLRILLGKQG 157

Query: 156 RAVF 159
               
Sbjct: 158 AMYL 161

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 59.8 bits (145), Expect = 8e-11
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 15  YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE--N 72
           YD+   +          +   ++    E            +LD+G G+GL    L E   
Sbjct: 17  YDEQRRKFIPCFDDFYGVSVSIASVDTE---------NPDILDLGAGTGLLSAFLMEKYP 67

Query: 73  GHQWIGLDISQSMLNIALEREVEG---DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129
              +  +D+S+ ML IA  R         +  D  +         D  +S  ++  L + 
Sbjct: 68  EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK-YDF-EEKYDMVVSALSIHHLEDE 125

Query: 130 DKASHEPRLRLKAFFGSLYRCLARGARAVF--QIYPESVAQRELI 172
           DK         K  +   Y  L      +    ++ E+     L 
Sbjct: 126 DK---------KELYKRSYSILKESGIFINADLVHGETAFIENLN 161

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 59.5 bits (144), Expect = 9e-11
 Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 22/146 (15%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
           FY    A  Y           K       L  LP       +L++GCG+G   E +   G
Sbjct: 16  FYRG-NATAYAERQPRSATLTKF------LGELPAGA---KILELGCGAGYQAEAMLAAG 65

Query: 74  HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKAS 133
                 D S  +   A  R +   +      Q   +     D   + + +  +   +   
Sbjct: 66  FDVDATDGSPELAAEA-SRRLGRPVRTMLFHQLDAIDA--YDAVWAHACLLHVPRDE--- 119

Query: 134 HEPRLRLKAFFGSLYRCLARGARAVF 159
                 L      ++R L  G     
Sbjct: 120 ------LADVLKLIWRALKPGGLFYA 139

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 17  DTEARKY-TSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQ 75
              A  Y    +   ++  +++      +    +    + L++G G+G     L   G++
Sbjct: 6   LRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEE--PVFLELGVGTGRIALPLIARGYR 63

Query: 76  WIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131
           +I LD   +ML +  ++    + +  ++  D  + + L    V G I +     + +  K
Sbjct: 64  YIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLWHLVPDWPK 122

Query: 132 ASHE 135
              E
Sbjct: 123 VLAE 126

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 16/162 (9%)

Query: 11  PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
           P+ + D   AR +         +    +  L  L L   G  R+L D+ CG+G+    L 
Sbjct: 19  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGL-LRQHGCHRVL-DVACGTGVDSIMLV 76

Query: 71  ENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGLR-------PGVVDGAIS 119
           E G     +D S  ML  AL+       E       + +   L            D  I 
Sbjct: 77  EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136

Query: 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
           +          K         +    ++   +  G   V   
Sbjct: 137 LGNSFAHLPDSKGDQS---EHRLALKNIASMVRPGGLLVIDH 175

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 15  YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH 74
           Y+      Y +      I  +  ERAL+ L  P + +    L++G G+G     L     
Sbjct: 10  YE----AWYGTPLGAYVIAEE--ERALKGLLPPGESL----LEVGAGTGYWLRRLP--YP 57

Query: 75  QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASH 134
           Q +G++ S++ML +   R  E   +    G+ L       D  +  + ++++ + ++   
Sbjct: 58  QKVGVEPSEAMLAVGRRRAPEATWVRAW-GEALPFPGESFDVVLLFTTLEFVEDVERV-- 114

Query: 135 EPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
                         R L  G   V  +         L      +   
Sbjct: 115 ---------LLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVL 152

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 15  YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH 74
             +    +Y     +    A LSE       LP+       ++IG G+G      +    
Sbjct: 16  IFERFVNEYERWFLVHRF-AYLSELQAVKCLLPEGRG----VEIGVGTGR----FAVPLK 66

Query: 75  QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASH 134
             IG++ S+ M  IA +R V   +L G   + L L+    D A+ ++ + ++ + ++A  
Sbjct: 67  IKIGVEPSERMAEIARKRGVF--VLKGTA-ENLPLKDESFDFALMVTTICFVDDPERALK 123

Query: 135 EPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGV 185
           E            YR L +G   +  I                ++ F    
Sbjct: 124 E-----------AYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA 163

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 52  PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEG----DLLLGDMGQGL 107
            + + DIGCG+G +   L++  ++  G+D+S+ ML IA E+ +E     D  + DM + L
Sbjct: 34  GKRIADIGCGTGTATLLLAD-HYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM-REL 91

Query: 108 GLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161
            L P  VD    +  ++ +L             +K  F S  R L  G + +F +
Sbjct: 92  EL-PEPVDAITILCDSLNYLQTEAD--------VKQTFDSAARLLTDGGKLLFDV 137

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 27/163 (16%), Positives = 45/163 (27%), Gaps = 25/163 (15%)

Query: 38  ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGD 97
           +  L  L  P   V    L+ GCG G           +W   D S  +L +A       D
Sbjct: 39  DLWLSRLLTPQTRV----LEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94

Query: 98  LLLGDMGQGLGLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR 156
           +   +    L           +S                P     +    L    A  A 
Sbjct: 95  VYEWNGKGELPAGLGAPFGLIVS-------------RRGPT----SVILRLPELAAPDAH 137

Query: 157 AVF---QIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSR 196
            ++   ++    V +R   +G  + A     V+   P     +
Sbjct: 138 FLYVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQ 180

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 31  DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW--IGLDISQSMLNI 88
                L +  +  L    D     +LDIGCG G      ++   +    GLD+S+  +  
Sbjct: 65  GHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 124

Query: 89  ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL 126
           A +R  +    +      L      +D  I I A    
Sbjct: 125 AAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYAPCKA 161

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 17/130 (13%)

Query: 38  ERALELLALPDDGVPRLLLDIGCGSGLSGETL-SENGHQWIGLDISQSMLNIALER---- 92
            R L+     +    + +LD G G  L   ++  E+G++  G++IS   L  A       
Sbjct: 12  YRFLKYCNESNLD--KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN 69

Query: 93  EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLA 152
             + ++  GD+ + L  +   +    S   +  +   D          K     + R L 
Sbjct: 70  NFKLNISKGDIRK-LPFKDESMSFVYSYGTIFHMRKNDV---------KEAIDEIKRVLK 119

Query: 153 RGARAVFQIY 162
            G  A     
Sbjct: 120 PGGLACINFL 129

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
           +Y   E +   S   +     +                 R +LDIGCG G   E   E G
Sbjct: 13  YYFLFEEKFRGSRELVKARLRRYIPYFKG---------CRRVLDIGCGRGEFLELCKEEG 63

Query: 74  HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNADKA 132
            + IG+DI++ M+     +    +++  D  + L  L    +DG +    V+        
Sbjct: 64  IESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVE-------- 112

Query: 133 SHEPRLRLKAFFGSLYRCLARGARAVFQI 161
            H    RL       Y  +   +  V + 
Sbjct: 113 -HLDPERLFELLSLCYSKMKYSSYIVIES 140

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 25/154 (16%)

Query: 15  YDDTEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN 72
           +D   A+     S+ +   I   ++E  +    +         +DIG G G     L++ 
Sbjct: 9   FDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGTC----IDIGSGPGALSIALAKQ 64

Query: 73  -GHQWIGLDISQSMLNIALEREVEGDL------LLGDMGQGLGLRPGVVDGAISISAVQW 125
                  LD S+ M  IAL+   + +L      + GD+   + +     D  +S  +V +
Sbjct: 65  SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV-HNIPIEDNYADLIVSRGSVFF 123

Query: 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
             +   A           F  +YR L  G +   
Sbjct: 124 WEDVATA-----------FREIYRILKSGGKTYI 146

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 19/132 (14%)

Query: 33  QAKLSERALELLAL-PDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIAL 90
             + +++ L  + L  +  V    LDIG G G     ++E  G    G+DI  +++N+A 
Sbjct: 40  GLEATKKILSDIELNENSKV----LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMAN 95

Query: 91  EREVEGDLL---LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSL 147
           ER    + +     D+           D   S  A+  L   +K            F   
Sbjct: 96  ERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAILALSLENK---------NKLFQKC 145

Query: 148 YRCLARGARAVF 159
           Y+ L      + 
Sbjct: 146 YKWLKPTGTLLI 157

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 38  ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA---LEREV 94
              L  L+L    V   L +IGC +G   E L+ +  +   +D+    +  A    +R  
Sbjct: 39  HTQLLRLSLSSGAVSNGL-EIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS 97

Query: 95  EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG 154
                  D+ Q       + D  +    + +L +          +++    ++ + LA G
Sbjct: 98  HISWAATDILQFST--AELFDLIVVAEVLYYLEDMT--------QMRTAIDNMVKMLAPG 147

Query: 155 ARAVF 159
              VF
Sbjct: 148 GHLVF 152

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 30/154 (19%)

Query: 15  YDDTEARKYTSSSRIIDIQAKLSERALELLAL-PDDGVPRLLLDIGCGSG----LSGETL 69
           +D ++ +K    SR+        E+ L+   L     V    LD+G G+G       + +
Sbjct: 7   FDPSKIKKLDDPSRLELFDP---EKVLKEFGLKEGMTV----LDVGTGAGFYLPYLSKMV 59

Query: 70  SENGHQWIGLDISQSMLNIALEREVEGDL-----LLGDMGQGLGLRPGVVDGAISISAVQ 124
            E G     +D+ + M+N A E+  +  L     L  +    + L    VD         
Sbjct: 60  GEKGKV-YAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIPLPDNTVDFIFMAFTFH 117

Query: 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAV 158
            L  ++            F   L R     A   
Sbjct: 118 EL--SEPL---------KFLEELKRVAKPFAYLA 140

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 42  ELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSML----NIALEREVEG- 96
           E+L       P   LD+GCG+G +   L+ NG+     D +   +     I     ++  
Sbjct: 23  EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNL 82

Query: 97  DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR 156
              + D+   L       D  +S   + +L             +     ++ RC   G  
Sbjct: 83  HTRVVDLNN-LTF-DRQYDFILSTVVLMFL---------EAKTIPGLIANMQRCTKPGGY 131

Query: 157 AVFQIYPESVAQRELILG------AAMRAGFAGGVVVDY 189
            +     ++      +          +R  + G   V Y
Sbjct: 132 NLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKY 170

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 37  SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE 95
           + +A+  +    D     + DIGCG+G     L++    Q  G+D+    + I  E  V+
Sbjct: 34  TRKAVSFINELTDD--AKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK 91

Query: 96  GDL------LLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR 149
            +       + G M   L  +   +D   S  A   + N            +       +
Sbjct: 92  ANCADRVKGITGSMDN-LPFQNEELDLIWSEGA---IYNIGF---------ERGMNEWSK 138

Query: 150 CLARGARAVF 159
            L +G     
Sbjct: 139 YLKKGGFIAV 148

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGL 79
             Y +S      +     + +++ AL  +     +LD+  G G      +    + +  
Sbjct: 11 HHMYVTSQIHA--KGSDLAKLMQIAALKGNEE---VLDVATGGGHVANAFAPFVKKVVAF 65

Query: 80 DISQSMLNIALER 92
          D+++ +L +A   
Sbjct: 66 DLTEDILKVARAF 78

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
          +LDIGC SG  G  + ENG +  G++        A E+
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEK 73

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 36/185 (19%)

Query: 15  YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH 74
           Y + EA + +  +  ++      +        P       +L+ GCG G     L++N  
Sbjct: 10  YSEREALRLSEQAETLE------KLLHHDTVYPPGAK---VLEAGCGIGAQTVILAKNNP 60

Query: 75  QW--IGLDISQSMLNIALEREVEGDL-----LLGDMGQGLGLRPGVVDGAISISAVQWLC 127
                 +DIS   L  A E   +  +     L  ++   L       D       ++ L 
Sbjct: 61  DAEITSIDISPESLEKARENTEKNGIKNVKFLQANI-FSLPFEDSSFDHIFVCFVLEHLQ 119

Query: 128 NADKASHEPRLRLKAFFGSLYRCLARGARAV--------FQIYPESVAQRELILGAAMRA 179
           + ++A             SL + L  G               +PE     E         
Sbjct: 120 SPEEA-----------LKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQ 168

Query: 180 GFAGG 184
            +  G
Sbjct: 169 AYMKG 173

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 55  LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ 105
           +LDIGCGSG     L+  G+   G+DI+   + +A        L     G+
Sbjct: 34  ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK 84

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 22/135 (16%)

Query: 33  QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALE 91
             +L++  + LL +        +LD+GCG G     L+     +  G+ IS+  +N A  
Sbjct: 46  TDRLTDEMIALLDVRSG---DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANA 102

Query: 92  R-EVEG-----DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFG 145
           R    G          D    L       D   ++ +           H P         
Sbjct: 103 RATAAGLANRVTFSYADAMD-LPFEDASFDAVWALES---------LHHMPDRG--RALR 150

Query: 146 SLYRCLARGARAVFQ 160
            + R L  G      
Sbjct: 151 EMARVLRPGGTVAIA 165

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 22/153 (14%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN- 72
           F  +     +++  R      +++ +AL  +    +    L+ DIGCG+G     L+ + 
Sbjct: 11  FELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEK--SLIADIGCGTGGQTMVLAGHV 68

Query: 73  GHQWIGLDISQSMLNIALER-EVEG-----DLLLGDMGQGLGLRPGVVDGAISISAVQWL 126
             Q  GLD     ++I        G       ++G M   L  R   +D   S  A+   
Sbjct: 69  TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD-LPFRNEELDLIWSEGAIY-- 125

Query: 127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
            N            +       + L +G     
Sbjct: 126 -NIGF---------ERGLNEWRKYLKKGGYLAV 148

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 16/124 (12%)

Query: 43  LLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLN----IALEREVEGDL 98
           L+++ +      +L +  G G +   L+  G++   +D S   L     +A E+ V+   
Sbjct: 21  LVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITT 80

Query: 99  LLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV 158
           +  ++     +     +G +SI             H P    +  +  +Y+ L  G   +
Sbjct: 81  VQSNLAD-FDIVADAWEGIVSIF-----------CHLPSSLRQQLYPKVYQGLKPGGVFI 128

Query: 159 FQIY 162
            + +
Sbjct: 129 LEGF 132

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 19/115 (16%)

Query: 55  LLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALER-EVEG-----DLLLGDMGQ 105
           +  + CG       L  +   G Q +G+D     L+ A              L   D  +
Sbjct: 122 VASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK 181

Query: 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160
            L       D   S     +    D A      R+   +   ++ L  G   V  
Sbjct: 182 -LDT-REGYDLLTSNGLNIYE--PDDA------RVTELYRRFWQALKPGGALVTS 226

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 15 YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH 74
            DT   KY  +     +   +               P  LL++G   G     L E+ +
Sbjct: 12 IKDTAGHKYAYNFDFDVMHPFMVRAFTPFFR------PGNLLELGSFKGDFTSRLQEHFN 65

Query: 75 QWIGLDISQSMLNIALEREVEG 96
              ++ S+  ++ A  R  +G
Sbjct: 66 DITCVEASEEAISHAQGRLKDG 87

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 37/196 (18%)

Query: 56  LDIGCGSGLSGETLSE---NGHQWIGLDISQSMLNIALERE------------------V 94
           LD+GCG+G      S+      + IG+D+  + L +A +                    +
Sbjct: 88  LDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFL 147

Query: 95  EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG 154
           +G +      +  G+    VD  IS          +K          A F  ++R L  G
Sbjct: 148 KGFIENLATAEPEGVPDSSVDIVISNCVCNLS--TNKL---------ALFKEIHRVLRDG 196

Query: 155 ARAVFQ-IYPESVAQRELILGAAMRAGFAGGV--VVDYPHSSKSR--KEFLVLTCGPPSI 209
               F  +Y +            +     GG   + D+         ++  +++ GP  +
Sbjct: 197 GELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSVGPVDV 256

Query: 210 SSEAPKGKVGDMESCS 225
           S    +  V D++  S
Sbjct: 257 SDPQLRKLVPDVQFYS 272

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 27/154 (17%)

Query: 40  ALELLALPDDGVPRLLLDIGCGSGLSGETLSE---NGHQWIGLDISQSMLNIALEREVEG 96
             +++    DG  +LL+D+GCG G +   +++      Q IG D+S +M+  A   +   
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84

Query: 97  DLLLG------------DMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFF 144
                                   +    +D   ++    W               + F 
Sbjct: 85  PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHW------------FDFEKFQ 132

Query: 145 GSLYRCLARGARAVFQIYPESVAQRELILGAAMR 178
            S Y  L +        Y + +          M 
Sbjct: 133 RSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMI 166

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 25/170 (14%)

Query: 4   RPELIAPPEIFYDDTEARKY-----TSSSRIIDIQAKLSER----ALELLALPDDGVPRL 54
             +L  P + +Y    A +Y      + S ++     + +     +   +A         
Sbjct: 39  TGDLYDPEKGWYGK--ALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSR 96

Query: 55  LLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE---GDLLLGDMGQGLGLR 110
            LD G G G   + L          L+  + ML  A         G  +L  M +   L 
Sbjct: 97  ALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM-ETATLP 155

Query: 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160
           P   D  +      +L +AD            FF    + L       F+
Sbjct: 156 PNTYDLIVIQWTAIYLTDAD---------FVKFFKHCQQALTPNGYIFFK 196

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 30/160 (18%)

Query: 55  LLDIGCGSGLSGETLSE---NGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGL 107
           ++D GCG G  G  L      G ++ G+D  +++L  A E       + + L GD    +
Sbjct: 26  IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEI 84

Query: 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV--------- 158
            L     D AI  + +  +   +    +           +   + +G + +         
Sbjct: 85  EL-NDKYDIAICHAFLLHMTTPETMLQK-----------MIHSVKKGGKIICFEPHWISN 132

Query: 159 -FQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRK 197
                 +   Q E I    ++  F      +    +   K
Sbjct: 133 MASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMK 172

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 27/146 (18%), Positives = 41/146 (28%), Gaps = 22/146 (15%)

Query: 25  SSSRIIDIQAKLSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDI 81
              ++I    +L     E L   L   G    L+D GCG G S        G +  G+ +
Sbjct: 89  YEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTL 148

Query: 82  SQSMLNIALER-EVEG-----DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHE 135
           S +  +    R             + +M        G V  + +  +       D     
Sbjct: 149 SAAQADFGNRRARELRIDDHVRSRVCNM-LDTPFDKGAVTASWNNEST---MYVDLH--- 201

Query: 136 PRLRLKAFFGSLYRCLARGARAVFQI 161
                   F    R L  G R V   
Sbjct: 202 ------DLFSEHSRFLKVGGRYVTIT 221

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 15/109 (13%)

Query: 55  LLDIGCGSGLSGETLSENGHQWIGLDISQSMLN----IALEREVEGDLLLGDMGQGLGLR 110
           +LD+GCG G +   LS  G+     D +++ +        +  +     L D+       
Sbjct: 124 VLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINA--ANI 181

Query: 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159
               D  +S                 R R+ +   ++      G   + 
Sbjct: 182 QENYDFIVSTVVFM---------FLNRERVPSIIKNMKEHTNVGGYNLI 221

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 17/139 (12%)

Query: 35  KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS----ENGHQWIGLDISQSMLNIAL 90
             S   +++     D V    +D  CG+G     L+    ENG    G DI    +    
Sbjct: 10  GQSHDYIKMFVKEGDTV----VDATCGNGNDTAFLASLVGENGRV-FGFDIQDKAIANTT 64

Query: 91  ER-EVEG-----DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFF 144
           ++           L+              V     +  + +L + D +            
Sbjct: 65  KKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV--MFNLGYLPSGDHSISTRPETTIQAL 122

Query: 145 GSLYRCLARGARAVFQIYP 163
                 L  G      IY 
Sbjct: 123 SKAMELLVTGGIITVVIYY 141

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 20/136 (14%)

Query: 33  QAKLSERALELLALPDDGVPRL-LLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIAL 90
             +  E     LA+      +   LD+G G G +   L    G     L+I+        
Sbjct: 63  SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE 122

Query: 91  EREVEGDL------LLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFF 144
           E   +  L        G   + +       D   S  A           H P       F
Sbjct: 123 EYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQDA---------FLHSP--DKLKVF 170

Query: 145 GSLYRCLARGARAVFQ 160
               R L         
Sbjct: 171 QECARVLKPRGVMAIT 186

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 9/112 (8%)

Query: 56  LDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEG---DLLLGDMGQGLGLRP 111
           L +GCG+      L   G      +D S  ++                  D+ + L    
Sbjct: 47  LVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPS 105

Query: 112 GVVDGAISISAVQWLCNADK----ASHEPRLRLKAFFGSLYRCLARGARAVF 159
              D  +    +  L   ++     S E    +      + R L  G R + 
Sbjct: 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 33/127 (25%)

Query: 45  ALPDDGVPRLLLDIGCGSGLSGETLSENGH--QWIGLDISQSMLNIALER---------- 92
           AL      R++ D+GCG G   + L ++    Q  G+D+S   L IA ER          
Sbjct: 24  ALKQSNARRVI-DLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82

Query: 93  -----EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSL 147
                 ++G L   D       R    D A  I  ++         H    RL AF   L
Sbjct: 83  WERLQLIQGALTYQD------KRFHGYDAATVIEVIE---------HLDLSRLGAFERVL 127

Query: 148 YRCLARG 154
           +      
Sbjct: 128 FEFAQPK 134

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 26/136 (19%)

Query: 33  QAKLSERALELLAL-PDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIAL 90
           + K       +L + P   +    LD+G GSG    T + + G    G+D+S      A 
Sbjct: 22  EEKY-ATLGRVLRMKPGTRI----LDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK 76

Query: 91  ER-EVEG-----DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFF 144
            R E  G       +  D    +       D A  + A                      
Sbjct: 77  RRAEELGVSERVHFIHNDAAGYVA--NEKCDVAACVGATW---------IAGGFA--GAE 123

Query: 145 GSLYRCLARGARAVFQ 160
             L + L  G   +  
Sbjct: 124 ELLAQSLKPGGIMLIG 139

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
             ++      +     +LDIG G+G +    S    + IG+D ++ M+ +A   
Sbjct: 11 GLMIKTAECRAEHR---VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 62

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 33/175 (18%), Positives = 49/175 (28%), Gaps = 32/175 (18%)

Query: 6   ELIAPPEIFYDDTEARKYTSS------------SRIIDIQAKLSERALE--LLALPDDGV 51
           E+I   + FY    A+ Y                 I  I    S + L+  L   P+   
Sbjct: 22  EVIEDEKQFYSK--AKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTG 79

Query: 52  PRLLLDIGCGSG-LSGETLSENGHQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQ 105
               LD G G G ++   L     +   +DI++  L  A     E      +     + Q
Sbjct: 80  TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-Q 138

Query: 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160
                P   D        QW+       H     L  F       L      V +
Sbjct: 139 DFTPEPDSYDVIWI----QWVIG-----HLTDQHLAEFLRRCKGSLRPNGIIVIK 184

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 15/141 (10%)

Query: 28  RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLN 87
           R I +        L+     +  V    +D   G+G     L+    +    D+ +  L 
Sbjct: 7   RPIHMSHDFLAEVLD----DESIV----VDATMGNGNDTAFLAGLSKKVYAFDVQEQALG 58

Query: 88  IALER-EVEG----DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKA 142
              +R    G    +L+L             +  AI    + +L +ADK+          
Sbjct: 59  KTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN--LGYLPSADKSVITKPHTTLE 116

Query: 143 FFGSLYRCLARGARAVFQIYP 163
               +   L  G R    IY 
Sbjct: 117 AIEKILDRLEVGGRLAIMIYY 137

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 14/115 (12%)

Query: 55  LLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER------EVEGDLLLGDMGQGL 107
           +LD+GCG G         G  ++ G+DI++  +N A  R        +      D     
Sbjct: 68  VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127

Query: 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162
                  D   S  +  +              L     ++ R L  G   +  + 
Sbjct: 128 MDLGKEFDVISSQFSFHYAF-------STSESLDIAQRNIARHLRPGGYFIMTVP 175

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 22/115 (19%)

Query: 52  PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER----------EVEGDLL 99
            + ++D+GCG G     L ++    Q  G+D+S S+L  A +R               L 
Sbjct: 30  AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF 89

Query: 100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG 154
              +      R    D A  I  ++         H    RL+AF   L+      
Sbjct: 90  QSSLVY-RDKRFSGYDAATVIEVIE---------HLDENRLQAFEKVLFEFTRPQ 134

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 30/140 (21%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 38  ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW--IGLDISQSMLNIA---LER 92
           E A+  L          ++D+G GSG    +++          +D+S   L +A    ER
Sbjct: 19  EEAIRFL--KRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER 76

Query: 93  -EVEGDLLLGDMGQGLGLRP---GVVDGAIS----ISAVQW-LCNADKASHEPRLRLKAF 143
                D    D  + L  R          +S    I   +          +EPRL   A 
Sbjct: 77  FGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRL---AL 133

Query: 144 FG-----SLYRCLARGARAV 158
            G       YR +A     V
Sbjct: 134 DGGEDGLQFYRRMAALPPYV 153

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 27/165 (16%)

Query: 26  SSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSM 85
           S+  +D  + L   AL+    P+    R +LD+G G G     L+  G + +G++   + 
Sbjct: 208 SAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLAS 267

Query: 86  LNIALER----EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN-----ADKASHEP 136
           +    +      ++   L  D+ +        +        +  + N           + 
Sbjct: 268 VLSLQKGLEANALKAQALHSDVDEA-------LTEEARFDII--VTNPPFHVGGAVILDV 318

Query: 137 RLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181
               +AF       L  G           V+   L     +   F
Sbjct: 319 ---AQAFVNVAAARLRPGGVFFL------VSNPFLKYEPLLEEKF 354

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.82
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.82
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.82
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.81
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.81
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.81
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.81
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.8
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.8
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.8
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.8
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.8
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.79
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.79
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.79
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.79
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.79
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.79
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.78
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.78
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.78
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.78
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.78
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.77
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.77
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.77
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.77
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.77
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.76
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.76
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.76
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.76
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.76
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.75
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.75
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.75
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.75
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.75
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.75
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.75
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.74
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.74
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.74
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.74
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.74
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.74
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.73
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.73
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.73
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.72
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.72
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.71
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.71
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.71
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.71
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.7
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.7
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.7
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.7
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.69
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.69
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.69
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.69
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.68
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.68
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.68
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.68
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.67
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.67
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.67
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.67
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.67
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.67
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.67
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.66
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.66
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.66
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.66
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.65
3ocj_A	305	Putative exported protein; structural genomics, PS	99.65
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.64
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.64
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.64
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.64
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.64
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.63
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.63
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.63
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.63
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.62
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.62
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.62
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.62
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.61
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.61
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.61
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.61
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.6
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.6
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.6
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.59
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.59
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.59
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.59
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.58
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.58
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.58
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.58
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.58
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.57
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.57
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.56
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.56
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.55
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.54
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.54
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.54
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.54
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.54
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.54
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.54
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.53
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.53
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.53
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.53
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.52
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.52
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.52
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.52
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.52
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.51
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.51
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.51
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.51
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.5
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.5
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.5
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.5
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.5
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.49
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.49
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.49
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.49
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.49
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.49
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.49
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.49
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.49
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.49
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.48
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.48
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.48
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.48
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.48
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.48
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.47
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.47
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.47
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.47
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.47
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.47
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.46
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.46
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.45
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.45
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.45
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.45
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.45
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.45
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.45
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.44
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.44
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.44
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.44
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.44
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.44
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.44
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.43
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.43
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.42
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.42
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.42
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.41
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.41
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.41
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.41
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.41
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.4
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.4
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.4
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.4
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.39
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.39
2o07_A	304	Spermidine synthase; structural genomics, structur	99.39
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.38
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.38
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.38
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.37
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.37
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.37
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.37
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.36
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.35
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.34
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.34
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.33
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.33
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.32
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.32
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.31
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.31
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.31
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.31
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.3
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.29
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.28
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.27
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.26
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.26
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.24
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.24
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.23
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.22
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.22
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.21
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.2
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.2
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.19
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.18
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.15
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.14
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.13
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.12
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.12
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.08
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.07
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.05
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	99.03
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.02
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.02
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.02
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.97
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.96
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.94
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.94
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.94
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.93
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.87
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.85
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.83
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.83
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.79
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.79
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.78
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.74
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.72
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.72
3khk_A	544	Type I restriction-modification system methylation	98.72
3lkd_A	542	Type I restriction-modification system methyltrans	98.71
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.65
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.64
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.57
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.54
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.53
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.45
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.44
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.43
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.42
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.37
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.37
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.26
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.24
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.2
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.16
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.11
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.07
3ufb_A	530	Type I restriction-modification system methyltran	97.96
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.81
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.6
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.54
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.38
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.36
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.25
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.25
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.23
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.22
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.22
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.84
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.8
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.68
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.52
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.48
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.45
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.42
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.05
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	96.01
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.87
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.84
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.75
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.72
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.7
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.64
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.47
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.44
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.43
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.28
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.16
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.93
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.85
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.78
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.65
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	94.59
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.53
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.52
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.5
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.44
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.16
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.12
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.07
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.03
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.95
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.94
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.91
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.9
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.87
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	93.86
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.78
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.74
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.67
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	93.65
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.55
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.41
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.35
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.31
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.27
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.16
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.12
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.1
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.03
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	92.59
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.42
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	92.22
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	91.98
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	91.89
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.63
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	91.62
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.61
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.23
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	91.18
4gua_A	670	Non-structural polyprotein; viral precursor polypr	91.05
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	90.89
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.83
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.78
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	90.77
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	90.74
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.49
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.37
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.31
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.31
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	90.29
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	90.21
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	89.88
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.68
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	89.6
3mag_A	307	VP39; methylated adenine, methyltransferase, RNA C	89.14
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.91
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.85
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	88.77
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	88.72
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	88.67
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	88.56
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.54
4eye_A	342	Probable oxidoreductase; structural genomics, niai	88.26
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	88.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.23
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	88.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	87.76
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	87.73
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	87.67
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	87.35
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	86.85
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	86.67
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.49
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	86.47
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	85.7
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	85.63
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	85.56
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.3
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.27
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	84.75
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	84.7
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	84.52
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.45
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	84.34
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.32
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	84.25
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	84.25
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	84.2
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	84.17
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	84.06
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	83.95
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	83.83
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	83.74
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.79
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	82.77
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	82.75
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	82.62
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	82.57
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	82.43
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	82.25
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.84
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	81.49
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	81.4
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	81.31
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	81.22
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	81.01
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	80.73
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	80.7
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	80.69
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	80.43
4ezb_A	317	Uncharacterized conserved protein; structural geno	80.27
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	80.26
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.24
4dqx_A	277	Probable oxidoreductase protein; structural genomi	80.14
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	80.04
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.02

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.82  E-value=3.3e-19  Score=157.61  Aligned_cols=140  Identities=23%  Similarity=0.290  Sum_probs=107.0

Q ss_pred             CCCCCCcccCCchhhccccccch-----hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEe
Q 043626            6 ELIAPPEIFYDDTEARKYTSSSR-----IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLD   80 (291)
Q Consensus         6 e~~~ppe~fy~~~~a~~Y~~~~~-----~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvD   80 (291)
                      ...+.+..+|++..+..|+....     +......+.+.+...+  ++   +.+|||||||+|.++..|++.+..++|+|
T Consensus         5 ~~~~~~~~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD   79 (263)
T 3pfg_A            5 SATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHS--PK---AASLLDVACGTGMHLRHLADSFGTVEGLE   79 (263)
T ss_dssp             -----CBCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC--TT---CCEEEEETCTTSHHHHHHTTTSSEEEEEE
T ss_pred             ccCcCcccccchhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--CC---CCcEEEeCCcCCHHHHHHHHcCCeEEEEE
Confidence            34455667888677888876432     2222233333333332  22   57999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECC-chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626           81 ISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus        81 is~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~-~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +|+.|++.|+++...+.++++|+.. +++ +++||+|++.. +++|+.+        ...+..+|.+++++|+|||.+++
T Consensus        80 ~s~~~~~~a~~~~~~~~~~~~d~~~-~~~-~~~fD~v~~~~~~l~~~~~--------~~~~~~~l~~~~~~L~pgG~l~i  149 (263)
T 3pfg_A           80 LSADMLAIARRRNPDAVLHHGDMRD-FSL-GRRFSAVTCMFSSIGHLAG--------QAELDAALERFAAHVLPDGVVVV  149 (263)
T ss_dssp             SCHHHHHHHHHHCTTSEEEECCTTT-CCC-SCCEEEEEECTTGGGGSCH--------HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCHHHHHHHHhhCCCCEEEECChHH-CCc-cCCcCEEEEcCchhhhcCC--------HHHHHHHHHHHHHhcCCCcEEEE
Confidence            9999999999998889999999944 566 78999999998 9999853        12367899999999999999999


Q ss_pred             E
Q 043626          160 Q  160 (291)
Q Consensus       160 ~  160 (291)
                      .
T Consensus       150 ~  150 (263)
T 3pfg_A          150 E  150 (263)
T ss_dssp             C
T ss_pred             E
Confidence            5

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.82  E-value=1.4e-19  Score=160.30  Aligned_cols=153  Identities=21%  Similarity=0.291  Sum_probs=116.1

Q ss_pred             cCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC
Q 043626           14 FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE   93 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~   93 (291)
                      +|+ ..+..|+......   ..+.+.+++.+...+   +.+|||||||+|.++..+++.+..|+|+|+|+.|++.|+.+.
T Consensus         4 ~y~-~~a~~y~~~~~~~---~~~~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   76 (261)
T 3ege_A            4 IYN-SIGKQYSQTRVPD---IRIVNAIINLLNLPK---GSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP   76 (261)
T ss_dssp             ----------CCSBCCC---HHHHHHHHHHHCCCT---TCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT
T ss_pred             HHH-HHHHHHhhccccc---HHHHHHHHHHhCCCC---CCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc
Confidence            454 5677787765432   256777888887665   789999999999999999999999999999999999888776


Q ss_pred             CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC--------
Q 043626           94 VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES--------  165 (291)
Q Consensus        94 ~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~--------  165 (291)
                       ++.++++|+ ..+++++++||+|++..+++|+.+           ...++++++++|+ ||++++..+...        
T Consensus        77 -~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~  142 (261)
T 3ege_A           77 -QVEWFTGYA-ENLALPDKSVDGVISILAIHHFSH-----------LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLY  142 (261)
T ss_dssp             -TEEEECCCT-TSCCSCTTCBSEEEEESCGGGCSS-----------HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGG
T ss_pred             -CCEEEECch-hhCCCCCCCEeEEEEcchHhhccC-----------HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHH
Confidence             789999998 557888899999999999999977           7799999999999 997777543310        


Q ss_pred             -------------hHHHHHHHHHHHHcCCCCcEEEe
Q 043626          166 -------------VAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       166 -------------~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                                   ......+. ++.++||....+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~  177 (261)
T 3ege_A          143 DYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP  177 (261)
T ss_dssp             GTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred             HHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence                         11345566 89999998633333

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.82  E-value=2.5e-19  Score=152.92  Aligned_cols=153  Identities=20%  Similarity=0.282  Sum_probs=121.1

Q ss_pred             CCchhhccccccch--hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHh
Q 043626           15 YDDTEARKYTSSSR--IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALE   91 (291)
Q Consensus        15 y~~~~a~~Y~~~~~--~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~   91 (291)
                      |++..+..|+....  ...+...+.+.+++.+..++   . +|||||||+|.++..+++. +..++|+|+|+.|++.|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~   84 (219)
T 3dlc_A            9 FDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITA---G-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALK   84 (219)
T ss_dssp             TSHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHCCCE---E-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHH
T ss_pred             hhhcchhhHHHHHHHhhccccHHHHHHHHHhcCCCC---C-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHH
Confidence            34344555544321  22345567788888887664   4 9999999999999999987 6799999999999999998


Q ss_pred             cC------CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-
Q 043626           92 RE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-  164 (291)
Q Consensus        92 ~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-  164 (291)
                      +.      ..+.++++|+ ..+++++++||+|+++.+++|+.+           ...++.+++++|+|||.+++..... 
T Consensus        85 ~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A           85 NIADANLNDRIQIVQGDV-HNIPIEDNYADLIVSRGSVFFWED-----------VATAFREIYRILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             HHHHTTCTTTEEEEECBT-TBCSSCTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred             HHHhccccCceEEEEcCH-HHCCCCcccccEEEECchHhhccC-----------HHHHHHHHHHhCCCCCEEEEEeccCc
Confidence            73      3478999998 557788899999999999999966           6789999999999999999974221 


Q ss_pred             --------------------------ChHHHHHHHHHHHHcCCCC
Q 043626          165 --------------------------SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       165 --------------------------~~~~~~~i~~~~~~aGF~~  183 (291)
                                                .....+.+..++.++||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  197 (219)
T 3dlc_A          153 KELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS  197 (219)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCe
Confidence                                      2234577889999999987

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.81  E-value=9.4e-20  Score=160.89  Aligned_cols=136  Identities=18%  Similarity=0.247  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      +....+.+++.+...+   +.+|||||||+|.++..|++.+..++|+|+|+.|++.|+++.     .++.++.+|+ ..+
T Consensus        22 ~~~~~~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l   97 (260)
T 1vl5_A           22 KGSDLAKLMQIAALKG---NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQM   97 (260)
T ss_dssp             -CCCHHHHHHHHTCCS---CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC
T ss_pred             CHHHHHHHHHHhCCCC---CCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhC
Confidence            3344567777887765   779999999999999999999889999999999999998764     4578999998 457


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE--cCCCh-------------------
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI--YPESV-------------------  166 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~--~~~~~-------------------  166 (291)
                      ++++++||+|+++.+++|+.+           ...+|.+++++|+|||++++..  .+..+                   
T Consensus        98 ~~~~~~fD~V~~~~~l~~~~d-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (260)
T 1vl5_A           98 PFTDERFHIVTCRIAAHHFPN-----------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHR  166 (260)
T ss_dssp             CSCTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCC
T ss_pred             CCCCCCEEEEEEhhhhHhcCC-----------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccC
Confidence            888899999999999999977           6789999999999999999863  22221                   


Q ss_pred             -HHHHHHHHHHHHcCCCC
Q 043626          167 -AQRELILGAAMRAGFAG  183 (291)
Q Consensus       167 -~~~~~i~~~~~~aGF~~  183 (291)
                       .....+..++.++||..
T Consensus       167 ~~~~~~~~~~l~~aGf~~  184 (260)
T 1vl5_A          167 AWKKSDWLKMLEEAGFEL  184 (260)
T ss_dssp             CCBHHHHHHHHHHHTCEE
T ss_pred             CCCHHHHHHHHHHCCCeE
Confidence             12356778888999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=1.7e-20  Score=159.38  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=110.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +.+|||||||+|.++..|++.+..++|+|+|+.|++.|+++...+.++.+|+ ..+++.+++||+|+++.+++|+...+ 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~~-  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMGPGE-  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCCTTT-
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCCHHH-
Confidence            4589999999999999999999999999999999999999988899999998 44677789999999999999986321 


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------hHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------VAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                              +..++..++++|+|||.+++.+....             ....+.+..++.++||....+..++.
T Consensus       120 --------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          120 --------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             --------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             --------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence                    67999999999999999999764322             13467889999999998745555544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.81  E-value=8.7e-20  Score=158.80  Aligned_cols=163  Identities=19%  Similarity=0.280  Sum_probs=109.6

Q ss_pred             CCCCCCCCCcccCCchhhccccccchhHH---HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEE
Q 043626            3 NRPELIAPPEIFYDDTEARKYTSSSRIID---IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGL   79 (291)
Q Consensus         3 ~~pe~~~ppe~fy~~~~a~~Y~~~~~~~~---iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gv   79 (291)
                      ..++.......+|+ ..+..|+.......   ....+...+.+.+  ++   +.+|||||||+|.++..+++.+..++|+
T Consensus         8 ~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~---~~~vLDiG~G~G~~~~~l~~~~~~v~~v   81 (242)
T 3l8d_A            8 TKFNWHESAEKKWD-SSAEFWNQNSQEMWDSGSRSTIIPFFEQYV--KK---EAEVLDVGCGDGYGTYKLSRTGYKAVGV   81 (242)
T ss_dssp             -------------------------CHHHHTSTTTTHHHHHHHHS--CT---TCEEEEETCTTSHHHHHHHHTTCEEEEE
T ss_pred             cccchHHHHHHHHH-hHHHHhhhhhhhccCcccHHHHHHHHHHHc--CC---CCeEEEEcCCCCHHHHHHHHcCCeEEEE
Confidence            34444444555665 56666765432111   1123344444443  23   6799999999999999999999999999


Q ss_pred             eCCHHHHHHHHhcC--CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEE
Q 043626           80 DISQSMLNIALERE--VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARA  157 (291)
Q Consensus        80 Dis~~ml~~a~~~~--~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~l  157 (291)
                      |+|+.|++.++++.  ..+.++.+|+ ..+++++++||+|++..+++|+.+           ...++..++++|+|||.+
T Consensus        82 D~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l  149 (242)
T 3l8d_A           82 DISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLEWTEE-----------PLRALNEIKRVLKSDGYA  149 (242)
T ss_dssp             ESCHHHHHHHHTTTCBTTEEEEECBT-TBCSSCTTCEEEEEEESCTTSSSC-----------HHHHHHHHHHHEEEEEEE
T ss_pred             ECCHHHHHHHHhhcccCCceEEEcch-hcCCCCCCCccEEEEcChHhhccC-----------HHHHHHHHHHHhCCCeEE
Confidence            99999999999874  4578999998 457888899999999999999976           678999999999999999


Q ss_pred             EEEEcCCC-------------------hHHHHHHHHHHHHcCCCC
Q 043626          158 VFQIYPES-------------------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       158 v~~~~~~~-------------------~~~~~~i~~~~~~aGF~~  183 (291)
                      ++.+....                   ......+..++.++||..
T Consensus       150 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  194 (242)
T 3l8d_A          150 CIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKV  194 (242)
T ss_dssp             EEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred             EEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEE
Confidence            99763221                   123457888999999986

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.81  E-value=3.8e-19  Score=156.19  Aligned_cols=108  Identities=19%  Similarity=0.361  Sum_probs=94.2

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCCCCCccc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      .+++++...+   +.+|||||||+|.++..+++.+. .|+|+|+|+.|++.|+++..  .+.++.+|+ ..+++..++||
T Consensus        35 ~l~~~~~~~~---~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD  110 (253)
T 3g5l_A           35 ELKKMLPDFN---QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYN  110 (253)
T ss_dssp             HHHTTCCCCT---TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEE
T ss_pred             HHHHhhhccC---CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeE
Confidence            4455554433   77999999999999999999986 99999999999999998864  578999998 55788889999


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +|++..+++|+.+           +..++++++++|+|||.+++.+
T Consensus       111 ~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          111 VVLSSLALHYIAS-----------FDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEchhhhhhhh-----------HHHHHHHHHHHcCCCcEEEEEe
Confidence            9999999999976           7799999999999999999974

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.80  E-value=2e-19  Score=153.79  Aligned_cols=141  Identities=17%  Similarity=0.171  Sum_probs=111.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++. .+.++.+|+ ..++ ..++||+|+++.+++|+..   
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~---  117 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-GRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVPR---  117 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-TSCCEECCG-GGCC-CCSCEEEEEECSCGGGSCH---
T ss_pred             CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-CCceEEeee-ccCC-CCCcEEEEEecCchhhcCH---
Confidence            679999999999999999999999999999999999999886 567888888 4455 6789999999999999852   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh------------HHHHHHHHHHHHcC-CCCcEEEeCCC--CCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV------------AQRELILGAAMRAG-FAGGVVVDYPH--SSKSR  196 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~------------~~~~~i~~~~~~aG-F~~~~~~~~p~--~~~~~  196 (291)
                            ..+..++..++++|+|||++++.+.....            ...+.+..++.++| |....+...+.  .....
T Consensus       118 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~  191 (211)
T 3e23_A          118 ------DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQEL  191 (211)
T ss_dssp             ------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCE
T ss_pred             ------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCC
Confidence                  22779999999999999999998654321            25678899999999 99733333322  22234


Q ss_pred             cEEEEEee
Q 043626          197 KEFLVLTC  204 (291)
Q Consensus       197 ~~~l~l~~  204 (291)
                      ..|+++..
T Consensus       192 ~~wl~~~~  199 (211)
T 3e23_A          192 AQFLHVSV  199 (211)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEE
Confidence            56666654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.80  E-value=1.5e-19  Score=157.81  Aligned_cols=135  Identities=22%  Similarity=0.251  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-CCCCCc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-GLRPGV  113 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-~~~~~~  113 (291)
                      .+.++++..+....+  +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++   +.++.+|+...+ ++.+++
T Consensus        27 ~~~~~~~~~l~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~  101 (240)
T 3dli_A           27 LVKARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKY  101 (240)
T ss_dssp             HHHHHHGGGGGGTTT--CSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHhhhcC--CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCC
Confidence            344555555553332  67999999999999999999999999999999999999988   778888875433 777899


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC----------------hHHHHHHHHHHH
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES----------------VAQRELILGAAM  177 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~----------------~~~~~~i~~~~~  177 (291)
                      ||+|+|+.+++|+.+++         +..+|.+++++|+|||++++.+....                ....+.+..++.
T Consensus       102 fD~i~~~~~l~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (240)
T 3dli_A          102 LDGVMISHFVEHLDPER---------LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILE  172 (240)
T ss_dssp             BSEEEEESCGGGSCGGG---------HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHH
T ss_pred             eeEEEECCchhhCCcHH---------HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHH
Confidence            99999999999997422         67999999999999999999764321                123467888899


Q ss_pred             HcCCCC
Q 043626          178 RAGFAG  183 (291)
Q Consensus       178 ~aGF~~  183 (291)
                      ++||..
T Consensus       173 ~aGf~~  178 (240)
T 3dli_A          173 YLGFRD  178 (240)
T ss_dssp             HHTCEE
T ss_pred             HCCCeE
Confidence            999985

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.80  E-value=3.2e-19  Score=154.80  Aligned_cols=136  Identities=20%  Similarity=0.267  Sum_probs=107.8

Q ss_pred             cccCCchhhccccccch-hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHH
Q 043626           12 EIFYDDTEARKYTSSSR-IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNI   88 (291)
Q Consensus        12 e~fy~~~~a~~Y~~~~~-~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~   88 (291)
                      ..+|+ ..+..|+.... .......+.+.+++++....+  +.+|||||||+|.++..+++.  +..++|+|+|+.|++.
T Consensus         7 ~~~f~-~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~   83 (234)
T 3dtn_A            7 KRKFD-AVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTE--NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI   83 (234)
T ss_dssp             CCCCC-HHHHHHHHHHHHHCTTHHHHHHHHHHTCCCSCS--SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             HHHHH-HHHHHHHHhHHHhCcCHHHHHHHHHHHhhcCCC--CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            34566 67888877533 112234455777777764433  789999999999999999998  6899999999999999


Q ss_pred             HHhcCC---cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           89 ALEREV---EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        89 a~~~~~---~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+++..   .+.++++|+ ..+++. ++||+|++..+++|+.+.         ....++++++++|+|||.+++..
T Consensus        84 a~~~~~~~~~~~~~~~d~-~~~~~~-~~fD~v~~~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A           84 AKNRFRGNLKVKYIEADY-SKYDFE-EKYDMVVSALSIHHLEDE---------DKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             HHHHTCSCTTEEEEESCT-TTCCCC-SCEEEEEEESCGGGSCHH---------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhhccCCCEEEEeCch-hccCCC-CCceEEEEeCccccCCHH---------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            998865   578999998 446665 899999999999999551         14479999999999999999865

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.80  E-value=1.3e-19  Score=160.62  Aligned_cols=162  Identities=19%  Similarity=0.217  Sum_probs=123.9

Q ss_pred             ccCCchhhccccccchhHHHHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 043626           13 IFYDDTEARKYTSSSRIIDIQAKLSERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIAL   90 (291)
Q Consensus        13 ~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~   90 (291)
                      .||.+..+..|+...+...........+++++. +++   +.+|||||||+|.++..+++.+ ..|+|+|+|+.|++.|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~   86 (267)
T 3kkz_A           10 DFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTE---KSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFN   86 (267)
T ss_dssp             HHHHHHHHHHHHTSSCSSSCCHHHHHHHHTTCCCCCT---TCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccCCCCHHHHHHHHHhcccCCC---CCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHH
Confidence            345555666666554433334456677787776 333   7899999999999999999986 59999999999999998


Q ss_pred             hcC------CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-
Q 043626           91 ERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-  163 (291)
Q Consensus        91 ~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-  163 (291)
                      ++.      ..+.++++|+ ..+++..++||+|+++.+++|+ +           +..++..++++|+|||++++.... 
T Consensus        87 ~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~~~~~-~-----------~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A           87 RNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGAIYNI-G-----------FERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             HHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSCGGGT-C-----------HHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             HHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCCceec-C-----------HHHHHHHHHHHcCCCCEEEEEEeee
Confidence            875      3488999998 5578888999999999999998 5           678999999999999999987421 


Q ss_pred             --C-Ch--------------HHHHHHHHHHHHcCCCCcEEEeCC
Q 043626          164 --E-SV--------------AQRELILGAAMRAGFAGGVVVDYP  190 (291)
Q Consensus       164 --~-~~--------------~~~~~i~~~~~~aGF~~~~~~~~p  190 (291)
                        . ..              .....+...+.++||....+...|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          154 FTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILP  197 (267)
T ss_dssp             SSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred             cCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence              1 11              134567788999999864444444

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.80  E-value=9.8e-19  Score=150.02  Aligned_cols=138  Identities=22%  Similarity=0.199  Sum_probs=114.0

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG  108 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~  108 (291)
                      .+.+++.+.+.+   +.+|||||||+|.++..+++.+   ..++|+|+|+.|++.|+++.     ..+.++.+|+ ..++
T Consensus        26 ~~~~~~~~~~~~---~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~  101 (219)
T 3dh0_A           26 PEKVLKEFGLKE---GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIP  101 (219)
T ss_dssp             HHHHHHHHTCCT---TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCS
T ss_pred             HHHHHHHhCCCC---CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCC
Confidence            456777777765   6799999999999999999886   79999999999999998875     3588999998 5577


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC----------hHHHHHHHHHHHH
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES----------VAQRELILGAAMR  178 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~----------~~~~~~i~~~~~~  178 (291)
                      +..++||+|+++.+++|+.+           ...++.+++++|+|||.+++..+...          ....+.+...+.+
T Consensus       102 ~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          102 LPDNTVDFIFMAFTFHELSE-----------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             SCSSCEEEEEEESCGGGCSS-----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             CCCCCeeEEEeehhhhhcCC-----------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence            88899999999999999976           67899999999999999999753311          1246788899999


Q ss_pred             cCCCCcEEEeC
Q 043626          179 AGFAGGVVVDY  189 (291)
Q Consensus       179 aGF~~~~~~~~  189 (291)
                      +||....+..+
T Consensus       171 ~Gf~~~~~~~~  181 (219)
T 3dh0_A          171 AGIRVGRVVEV  181 (219)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCEEEEEEee
Confidence            99986444444

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.79  E-value=4.7e-19  Score=154.02  Aligned_cols=151  Identities=17%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             ccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           13 IFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        13 ~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      .||+ ..+..|.....    .....+.+++.+....+  +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++
T Consensus        11 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~l~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~   83 (250)
T 2p7i_A           11 EIKD-TAGHKYAYNFD----FDVMHPFMVRAFTPFFR--PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGR   83 (250)
T ss_dssp             -------------CHH----HHTHHHHHHHHHGGGCC--SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHH
T ss_pred             HHHh-hHHHHhcCccc----hhhHHHHHHHHHHhhcC--CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHh
Confidence            4555 55666654321    12233455555542222  56899999999999999999999999999999999999998


Q ss_pred             CC-cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH-HhccCCcEEEEEEcCCC-----
Q 043626           93 EV-EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY-RCLARGARAVFQIYPES-----  165 (291)
Q Consensus        93 ~~-~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~-~~LkpgG~lv~~~~~~~-----  165 (291)
                      .. .+.++++|+.+.  +.+++||+|++..+++|+.+           ...++++++ ++|+|||++++.+....     
T Consensus        84 ~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~  150 (250)
T 2p7i_A           84 LKDGITYIHSRFEDA--QLPRRYDNIVLTHVLEHIDD-----------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQ  150 (250)
T ss_dssp             SCSCEEEEESCGGGC--CCSSCEEEEEEESCGGGCSS-----------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHH
T ss_pred             hhCCeEEEEccHHHc--CcCCcccEEEEhhHHHhhcC-----------HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHH
Confidence            76 689999998543  45789999999999999977           678999999 99999999999763211     


Q ss_pred             -------------------------hHHHHHHHHHHHHcCCCC
Q 043626          166 -------------------------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       166 -------------------------~~~~~~i~~~~~~aGF~~  183 (291)
                                               ....+.+..++.++||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          151 IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  193 (250)
T ss_dssp             HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             HHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence                                     123557788888999975

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.79  E-value=8.6e-19  Score=154.25  Aligned_cols=136  Identities=21%  Similarity=0.211  Sum_probs=112.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLR  110 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~  110 (291)
                      ...+.+++.+.+.+   +.+|||||||+|.++..+++. +..|+|+|+|+.|++.|+++.   ..+.++++|+. .++++
T Consensus        42 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~  117 (266)
T 3ujc_A           42 EATKKILSDIELNE---NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TKEFP  117 (266)
T ss_dssp             HHHHHHTTTCCCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TCCCC
T ss_pred             HHHHHHHHhcCCCC---CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cCCCC
Confidence            45567777776665   679999999999999999987 799999999999999999987   45899999984 46888


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------------hHHHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------------VAQREL  171 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------------~~~~~~  171 (291)
                      +++||+|++..+++|++.         .....++.+++++|+|||.+++......                   ....+.
T Consensus       118 ~~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSL---------ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEE  188 (266)
T ss_dssp             TTCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHH
T ss_pred             CCcEEEEeHHHHHHhcCh---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHH
Confidence            899999999999999822         2278999999999999999999753211                   123567


Q ss_pred             HHHHHHHcCCCC
Q 043626          172 ILGAAMRAGFAG  183 (291)
Q Consensus       172 i~~~~~~aGF~~  183 (291)
                      +...+.++||..
T Consensus       189 ~~~~l~~~Gf~~  200 (266)
T 3ujc_A          189 YADILTACNFKN  200 (266)
T ss_dssp             HHHHHHHTTCEE
T ss_pred             HHHHHHHcCCeE
Confidence            888899999976

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.79  E-value=5.7e-19  Score=157.28  Aligned_cols=97  Identities=20%  Similarity=0.322  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~  121 (291)
                      +.+|||||||+|..+..|++.    |.+|+|||+|+.||+.|+++..      .++++++|+ ..+++  +.||+|++++
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~-~~~~~--~~~d~v~~~~  147 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-RDIAI--ENASMVVLNF  147 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT-TTCCC--CSEEEEEEES
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc-ccccc--cccccceeee
Confidence            679999999999999999876    4689999999999999998642      478999998 44565  5799999999


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++||+++         .....+|++++++|+|||++++.
T Consensus       148 ~l~~~~~---------~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          148 TLQFLEP---------SERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             CGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeecCc---------hhHhHHHHHHHHHcCCCcEEEEE
Confidence            9999854         22467999999999999999985

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.79  E-value=3.8e-19  Score=158.13  Aligned_cols=139  Identities=23%  Similarity=0.270  Sum_probs=101.7

Q ss_pred             hhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcce
Q 043626           18 TEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGD   97 (291)
Q Consensus        18 ~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~   97 (291)
                      ..|..|+....  .+..++.+.+.+...  .   ..+|||||||+|.++..|++.+.+|+|+|+|+.|++.|++ ..++.
T Consensus        13 ~~a~~Y~~~Rp--~yp~~l~~~l~~~~~--~---~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-~~~v~   84 (257)
T 4hg2_A           13 PVADAYRAFRP--RYPRALFRWLGEVAP--A---RGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-HPRVT   84 (257)
T ss_dssp             -------CCCC--CCCHHHHHHHHHHSS--C---SSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-CTTEE
T ss_pred             HHHHHHHHHCC--CcHHHHHHHHHHhcC--C---CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-cCCce
Confidence            56777876421  111244555555532  2   4599999999999999999999999999999999998865 46789


Q ss_pred             EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC--hHHHHHHHHH
Q 043626           98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES--VAQRELILGA  175 (291)
Q Consensus        98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~--~~~~~~i~~~  175 (291)
                      ++++|+ +.+++++++||+|+|..++||+.            ...++.+++++|||||.|++..|...  ...+..+...
T Consensus        85 ~~~~~~-e~~~~~~~sfD~v~~~~~~h~~~------------~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~  151 (257)
T 4hg2_A           85 YAVAPA-EDTGLPPASVDVAIAAQAMHWFD------------LDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDR  151 (257)
T ss_dssp             EEECCT-TCCCCCSSCEEEEEECSCCTTCC------------HHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHH
T ss_pred             eehhhh-hhhcccCCcccEEEEeeehhHhh------------HHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHH
Confidence            999998 56899999999999999999873            45789999999999999998776532  2344444444


Q ss_pred             HH
Q 043626          176 AM  177 (291)
Q Consensus       176 ~~  177 (291)
                      +.
T Consensus       152 ~~  153 (257)
T 4hg2_A          152 LY  153 (257)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.79  E-value=2.2e-18  Score=152.86  Aligned_cols=141  Identities=17%  Similarity=0.238  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626           28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLL  100 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~  100 (291)
                      .+...+..+.+.+++.+.+.+   +.+|||||||+|.++..+++. +..|+|+|+|+.+++.|+++..      .+.++.
T Consensus        41 ~~~~~~~~~~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  117 (273)
T 3bus_A           41 SVDDATDRLTDEMIALLDVRS---GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSY  117 (273)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCT---TCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CHHHHHHHHHHHHHHhcCCCC---CCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence            456677888899999988766   779999999999999999875 7899999999999999987642      478999


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC----h----------
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES----V----------  166 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~----~----------  166 (291)
                      +|+ ..+++++++||+|++..+++|+.+           ...+|..++++|+|||++++......    .          
T Consensus       118 ~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~  185 (273)
T 3bus_A          118 ADA-MDLPFEDASFDAVWALESLHHMPD-----------RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR  185 (273)
T ss_dssp             CCT-TSCCSCTTCEEEEEEESCTTTSSC-----------HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred             Ccc-ccCCCCCCCccEEEEechhhhCCC-----------HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHH
Confidence            998 457888899999999999999977           57899999999999999998653210    0          


Q ss_pred             --------HHHHHHHHHHHHcCCCC
Q 043626          167 --------AQRELILGAAMRAGFAG  183 (291)
Q Consensus       167 --------~~~~~i~~~~~~aGF~~  183 (291)
                              .....+..++.++||..
T Consensus       186 ~~~~~~~~~~~~~~~~~l~~aGf~~  210 (273)
T 3bus_A          186 AGGGVLSLGGIDEYESDVRQAELVV  210 (273)
T ss_dssp             HHHTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             hhcCccCCCCHHHHHHHHHHcCCeE
Confidence                    12356677788888875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.79  E-value=2.3e-19  Score=153.53  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----------------CcceEEE
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----------------VEGDLLL  100 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----------------~~~~~~~  100 (291)
                      ...++.+.+++   +.+|||+|||+|..+..|++.|..|+|+|+|+.|++.|+++.                 ..+.+++
T Consensus        12 ~~~~~~l~~~~---~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (203)
T 1pjz_A           12 QQYWSSLNVVP---GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   88 (203)
T ss_dssp             HHHHHHHCCCT---TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHhcccCC---CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence            34455666655   679999999999999999999999999999999999998763                 3578999


Q ss_pred             ccCCCCCCCCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          101 GDMGQGLGLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       101 ~D~~~~~~~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+. .+++.+ ++||+|++..+++|++.         .....++++++++|+|||++++.
T Consensus        89 ~d~~-~l~~~~~~~fD~v~~~~~l~~l~~---------~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           89 GDFF-ALTARDIGHCAAFYDRAAMIALPA---------DMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             ECCS-SSTHHHHHSEEEEEEESCGGGSCH---------HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             Cccc-cCCcccCCCEEEEEECcchhhCCH---------HHHHHHHHHHHHHcCCCcEEEEE
Confidence            9984 466654 79999999999999843         22567999999999999984443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.79  E-value=2.2e-19  Score=153.51  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=117.2

Q ss_pred             cCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC
Q 043626           14 FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE   93 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~   93 (291)
                      ||+ ..+..|+..  ...........+++.+....+  +.+|||||||+|.++..+++.+..++|+|+|+.|++.|++..
T Consensus        14 ~~~-~~a~~y~~~--~~~~~~~~~~~~~~~l~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~   88 (218)
T 3ou2_A           14 YYR-ARASEYDAT--FVPYMDSAAPAALERLRAGNI--RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHG   88 (218)
T ss_dssp             HHH-HHGGGHHHH--HHHHHTTTHHHHHHHHTTTTS--CSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGC
T ss_pred             HHH-HHHHHHHHh--hhhHHHHHHHHHHHHHhcCCC--CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcC
Confidence            444 556666552  122222335567777763332  679999999999999999999999999999999999999855


Q ss_pred             -CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------
Q 043626           94 -VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------  165 (291)
Q Consensus        94 -~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------  165 (291)
                       ..+.++.+|+.. + +..++||+|+++.+++|+.+         ..+..++..++++|+|||.+++......       
T Consensus        89 ~~~~~~~~~d~~~-~-~~~~~~D~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  157 (218)
T 3ou2_A           89 LDNVEFRQQDLFD-W-TPDRQWDAVFFAHWLAHVPD---------DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQ  157 (218)
T ss_dssp             CTTEEEEECCTTS-C-CCSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEEECCCC------
T ss_pred             CCCeEEEeccccc-C-CCCCceeEEEEechhhcCCH---------HHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchh
Confidence             568999999854 3 66899999999999999865         2257899999999999999998743211       


Q ss_pred             ------------------------hHHHHHHHHHHHHcCCCC
Q 043626          166 ------------------------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       166 ------------------------~~~~~~i~~~~~~aGF~~  183 (291)
                                              ....+.+..++.++||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  199 (218)
T 3ou2_A          158 DDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC  199 (218)
T ss_dssp             ------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             hhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence                                    114567888899999973

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.79  E-value=2.1e-18  Score=151.11  Aligned_cols=142  Identities=17%  Similarity=0.105  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGL  107 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~  107 (291)
                      ........+++.+...+   +.+|||||||+|.++..|+..+ ..++|+|+|+.|++.|+++..   .+.++++|+ ..+
T Consensus        77 ~~~~~~~~~l~~l~~~~---~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~  152 (254)
T 1xtp_A           77 VDIEGSRNFIASLPGHG---TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM-ETA  152 (254)
T ss_dssp             HHHHHHHHHHHTSTTCC---CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG-GGC
T ss_pred             HHHHHHHHHHHhhcccC---CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccH-HHC
Confidence            34455566777765544   6799999999999999999885 679999999999999998874   578999998 446


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------hHHHHHHHH
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------VAQRELILG  174 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------~~~~~~i~~  174 (291)
                      ++++++||+|++..+++|+.+         ..+..++..++++|+|||.+++......             ....+.+..
T Consensus       153 ~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (254)
T 1xtp_A          153 TLPPNTYDLIVIQWTAIYLTD---------ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR  223 (254)
T ss_dssp             CCCSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred             CCCCCCeEEEEEcchhhhCCH---------HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHH
Confidence            777889999999999999843         2267999999999999999999763110             123577889


Q ss_pred             HHHHcCCCCcEE
Q 043626          175 AAMRAGFAGGVV  186 (291)
Q Consensus       175 ~~~~aGF~~~~~  186 (291)
                      ++.++||....+
T Consensus       224 ~l~~aGf~~~~~  235 (254)
T 1xtp_A          224 LFNESGVRVVKE  235 (254)
T ss_dssp             HHHHHTCCEEEE
T ss_pred             HHHHCCCEEEEe
Confidence            999999987333

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.78  E-value=2.2e-18  Score=154.89  Aligned_cols=141  Identities=17%  Similarity=0.072  Sum_probs=117.1

Q ss_pred             hhHHHHHHHHHHHHHHh----CCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC------Ccc
Q 043626           28 RIIDIQAKLSERALELL----ALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE------VEG   96 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL----~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~------~~~   96 (291)
                      .+...+..+.+.+++.+    .+.+   +.+|||||||+|.++..|++. +..++|+|+|+.|++.|+++.      ..+
T Consensus        58 ~~~~~~~~~~~~l~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~  134 (297)
T 2o57_A           58 EIREASLRTDEWLASELAMTGVLQR---QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNI  134 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTE
T ss_pred             chHHHHHHHHHHHHHHhhhccCCCC---CCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcce
Confidence            35567778888999998    6665   779999999999999999987 789999999999999998764      347


Q ss_pred             eEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-----------
Q 043626           97 DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-----------  165 (291)
Q Consensus        97 ~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-----------  165 (291)
                      .++++|+ ..+|+++++||+|++..+++|+.+           ...+|.+++++|+|||++++......           
T Consensus       135 ~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  202 (297)
T 2o57_A          135 TVKYGSF-LEIPCEDNSYDFIWSQDAFLHSPD-----------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPI  202 (297)
T ss_dssp             EEEECCT-TSCSSCTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHH
T ss_pred             EEEEcCc-ccCCCCCCCEeEEEecchhhhcCC-----------HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHH
Confidence            8999998 457888899999999999999976           67899999999999999999743110           


Q ss_pred             --------hHHHHHHHHHHHHcCCCC
Q 043626          166 --------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       166 --------~~~~~~i~~~~~~aGF~~  183 (291)
                              ......+..++.++||..
T Consensus       203 ~~~~~~~~~~~~~~~~~~l~~aGf~~  228 (297)
T 2o57_A          203 LDRIKLHDMGSLGLYRSLAKECGLVT  228 (297)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHTTEEE
T ss_pred             HHHhcCCCCCCHHHHHHHHHHCCCeE
Confidence                    013456677888999975

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.78  E-value=1.8e-18  Score=152.17  Aligned_cols=129  Identities=16%  Similarity=0.260  Sum_probs=102.1

Q ss_pred             hhhccccccchh-HHHHHHHHHHHHHHh-CCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC--
Q 043626           18 TEARKYTSSSRI-IDIQAKLSERALELL-ALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE--   93 (291)
Q Consensus        18 ~~a~~Y~~~~~~-~~iq~~~~~~~lelL-~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~--   93 (291)
                      ..+..|+..... ......+.+.+++++ .+.+   +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++.  
T Consensus         7 ~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   83 (263)
T 2yqz_A            7 RAAYAYDRLRAHPPEVAGQIATAMASAVHPKGE---EPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAG   83 (263)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCSSS---CCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHHHhhhcccChHHHHHHHHHHHHhhcCCCC---CCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc
Confidence            456666654322 222333444443322 3333   679999999999999999999999999999999999999884  


Q ss_pred             --CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           94 --VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        94 --~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                        ..+.++.+|+ ..+++.+++||+|++..+++|+.+           ...++.+++++|+|||.+++.+
T Consensus        84 ~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A           84 VDRKVQVVQADA-RAIPLPDESVHGVIVVHLWHLVPD-----------WPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             SCTTEEEEESCT-TSCCSCTTCEEEEEEESCGGGCTT-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCceEEEEccc-ccCCCCCCCeeEEEECCchhhcCC-----------HHHHHHHHHHHCCCCcEEEEEe
Confidence              4588999998 557888899999999999999976           6789999999999999999873

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.78  E-value=2.2e-18  Score=150.59  Aligned_cols=134  Identities=16%  Similarity=0.135  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~  109 (291)
                      .....+++.+.+.+   +.+|||||||+|.++..+++.+..++|+|+|+.|++.++++.     .++.++.+|+ ..+++
T Consensus         8 ~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~   83 (239)
T 1xxl_A            8 HSLGLMIKTAECRA---EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPF   83 (239)
T ss_dssp             HHHHHHHHHHTCCT---TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCS
T ss_pred             CCcchHHHHhCcCC---CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCC
Confidence            34556778888876   789999999999999999999999999999999999998764     4578999998 55788


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CC--------------------hH
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ES--------------------VA  167 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~--------------------~~  167 (291)
                      .+++||+|++..+++|+.+           +..++.+++++|+|||++++....  ..                    ..
T Consensus        84 ~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (239)
T 1xxl_A           84 PDDSFDIITCRYAAHHFSD-----------VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRES  152 (239)
T ss_dssp             CTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCC
T ss_pred             CCCcEEEEEECCchhhccC-----------HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCC
Confidence            8899999999999999976           678999999999999999986422  11                    11


Q ss_pred             HHHHHHHHHHHcCCCC
Q 043626          168 QRELILGAAMRAGFAG  183 (291)
Q Consensus       168 ~~~~i~~~~~~aGF~~  183 (291)
                      ....+..++.++||..
T Consensus       153 ~~~~~~~ll~~aGf~~  168 (239)
T 1xxl_A          153 SLSEWQAMFSANQLAY  168 (239)
T ss_dssp             BHHHHHHHHHHTTEEE
T ss_pred             CHHHHHHHHHHCCCcE
Confidence            2445677777888875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=1.2e-18  Score=155.48  Aligned_cols=113  Identities=23%  Similarity=0.382  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f  114 (291)
                      .+.+.+++.+...+   +.+|||||||+|.++..+++.+..|+|+|+|+.|++.++++...+.++.+|+. .+++ +++|
T Consensus        44 ~~~~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~-~~~f  118 (279)
T 3ccf_A           44 QYGEDLLQLLNPQP---GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADAR-NFRV-DKPL  118 (279)
T ss_dssp             SSCCHHHHHHCCCT---TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTT-TCCC-SSCE
T ss_pred             HHHHHHHHHhCCCC---CCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChh-hCCc-CCCc
Confidence            45566777777655   67999999999999999999889999999999999999998888999999984 4676 6899


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      |+|++..+++|+.+           ...++.+++++|+|||++++.+..
T Consensus       119 D~v~~~~~l~~~~d-----------~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          119 DAVFSNAMLHWVKE-----------PEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             EEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CEEEEcchhhhCcC-----------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            99999999999977           678999999999999999998754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=1.2e-18  Score=153.18  Aligned_cols=124  Identities=22%  Similarity=0.275  Sum_probs=104.3

Q ss_pred             hccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcce
Q 043626           20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGD   97 (291)
Q Consensus        20 a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~   97 (291)
                      +..|+.....   +......+++.+...+   +.+|||||||+|.++..+++.  +..++|+|+|+.|++.++++...+.
T Consensus         8 ~~~y~~~~~~---~~~~~~~l~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~   81 (259)
T 2p35_A            8 AQQYLKFEDE---RTRPARDLLAQVPLER---VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN   81 (259)
T ss_dssp             CGGGBCCCCG---GGHHHHHHHTTCCCSC---CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSE
T ss_pred             HHHHHHHHHH---HHHHHHHHHHhcCCCC---CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcE
Confidence            5566665432   3345566777776654   679999999999999999988  7899999999999999999888899


Q ss_pred             EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626           98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus        98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ++.+|+.. ++ .+++||+|+++.+++|+.+           ...++.+++++|+|||.+++.+.
T Consensus        82 ~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           82 FGKADLAT-WK-PAQKADLLYANAVFQWVPD-----------HLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EEECCTTT-CC-CSSCEEEEEEESCGGGSTT-----------HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEECChhh-cC-ccCCcCEEEEeCchhhCCC-----------HHHHHHHHHHhcCCCeEEEEEeC
Confidence            99999844 55 6789999999999999976           67899999999999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.78  E-value=5.2e-19  Score=155.41  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=114.5

Q ss_pred             hccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc---
Q 043626           20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE---   95 (291)
Q Consensus        20 a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~---   95 (291)
                      ...|....+...........+++.+....+  +.+|||||||+|.++..+++.+ ..|+|+|+|+.+++.|+++...   
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   94 (257)
T 3f4k_A           17 CNYFKLLKRQGPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC   94 (257)
T ss_dssp             HHHHTTSSCSSSCCHHHHHHHHTTSCCCCT--TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCccccCCCCHHHHHHHHHHHhcCCC--CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            344444433222233556677777743332  6799999999999999999986 4999999999999999887532   


Q ss_pred             ---ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc---CCC----
Q 043626           96 ---GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY---PES----  165 (291)
Q Consensus        96 ---~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~---~~~----  165 (291)
                         +.++++|+ ..+++.+++||+|+++.+++|+ +           ...++..++++|+|||++++...   ...    
T Consensus        95 ~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~-~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~  161 (257)
T 3f4k_A           95 ADRVKGITGSM-DNLPFQNEELDLIWSEGAIYNI-G-----------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAE  161 (257)
T ss_dssp             TTTEEEEECCT-TSCSSCTTCEEEEEEESCSCCC-C-----------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH
T ss_pred             CCceEEEECCh-hhCCCCCCCEEEEEecChHhhc-C-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHH
Confidence               78999998 6678888999999999999998 4           56899999999999999999752   111    


Q ss_pred             -----------hHHHHHHHHHHHHcCCCCc
Q 043626          166 -----------VAQRELILGAAMRAGFAGG  184 (291)
Q Consensus       166 -----------~~~~~~i~~~~~~aGF~~~  184 (291)
                                 ......+...+.++||...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  191 (257)
T 3f4k_A          162 IEDFWMDAYPEISVIPTCIDKMERAGYTPT  191 (257)
T ss_dssp             HHHHHHHHCTTCCBHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHCCCeEE
Confidence                       1124567788899999763

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.77  E-value=1.9e-19  Score=169.95  Aligned_cols=168  Identities=18%  Similarity=0.236  Sum_probs=124.1

Q ss_pred             CCcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHH
Q 043626           10 PPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA   89 (291)
Q Consensus        10 ppe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a   89 (291)
                      +|+.+|++..+.....+..+......+.+.+++.+.+.+   +.+|||||||+|.++..|++.|..++|+|+|+.|++.|
T Consensus        69 ~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a  145 (416)
T 4e2x_A           69 PRDLMFHEVYPYHSSGSSVMREHFAMLARDFLATELTGP---DPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKA  145 (416)
T ss_dssp             CHHHHSSTTCCCCGGGCHHHHHHHHHHHHHHHHTTTCSS---SCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred             CHHHhccCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCC---CCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHH
Confidence            445556533332222233455667778888888887765   67999999999999999999999999999999999999


Q ss_pred             HhcCCcc--eEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC----
Q 043626           90 LEREVEG--DLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP----  163 (291)
Q Consensus        90 ~~~~~~~--~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~----  163 (291)
                      +++....  .++..+....+++.+++||+|+++.+++|+.+           +..+|++++++|+|||++++.+..    
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~  214 (416)
T 4e2x_A          146 REKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPY-----------VQSVLEGVDALLAPDGVFVFEDPYLGDI  214 (416)
T ss_dssp             HTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTT-----------HHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             HHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcCC-----------HHHHHHHHHHHcCCCeEEEEEeCChHHh
Confidence            9873321  11111111334566789999999999999976           789999999999999999997521    


Q ss_pred             -----------C--ChHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          164 -----------E--SVAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       164 -----------~--~~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                                 .  .....+.+..++.++||....+..+|.
T Consensus       215 ~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~  255 (416)
T 4e2x_A          215 VAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLPV  255 (416)
T ss_dssp             HHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEECG
T ss_pred             hhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEccC
Confidence                       1  112456789999999998755555553

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.77  E-value=3.9e-18  Score=153.83  Aligned_cols=174  Identities=16%  Similarity=0.229  Sum_probs=119.1

Q ss_pred             ccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           13 IFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        13 ~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      .||+...+..|+...... ........+++.+...    +.+|||||||+|.++..|++.+..|+|+|+|+.|++.|+++
T Consensus        49 ~~y~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~----~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~  123 (299)
T 3g2m_A           49 DFYDEGAADTYRDLIQDA-DGTSEAREFATRTGPV----SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKR  123 (299)
T ss_dssp             ECC--------------C-CCHHHHHHHHHHHCCC----CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHhccc-CccHHHHHHHHhhCCC----CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence            467755556665543210 1134456667777644    34999999999999999999999999999999999999987


Q ss_pred             CC--------cceEEEccCCCCCCCCCCcccEEEEC-CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           93 EV--------EGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        93 ~~--------~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ..        .+.++++|+. .+++ +++||+|++. .+++|+.         ......+|.+++++|+|||++++.++.
T Consensus       124 ~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~v~~~~~~~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          124 LAEAPADVRDRCTLVQGDMS-AFAL-DKRFGTVVISSGSINELD---------EADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             HHTSCHHHHTTEEEEECBTT-BCCC-SCCEEEEEECHHHHTTSC---------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HhhcccccccceEEEeCchh-cCCc-CCCcCEEEECCcccccCC---------HHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence            53        4789999994 4666 7899999975 5566653         233679999999999999999997543


Q ss_pred             CCh--------------------------------------------------------HHHHHHHHHHHHcCCCCcEEE
Q 043626          164 ESV--------------------------------------------------------AQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       164 ~~~--------------------------------------------------------~~~~~i~~~~~~aGF~~~~~~  187 (291)
                      ...                                                        ...+.+..++.++||....+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~  272 (299)
T 3g2m_A          193 SEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQT  272 (299)
T ss_dssp             CHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEE
T ss_pred             CccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEE
Confidence            221                                                        156789999999999976666


Q ss_pred             eCCCCCCCCcEEEEE
Q 043626          188 DYPHSSKSRKEFLVL  202 (291)
Q Consensus       188 ~~p~~~~~~~~~l~l  202 (291)
                      .++.........+++
T Consensus       273 ~~~~~g~~~~~~~lv  287 (299)
T 3g2m_A          273 PFASGGAGRKDMVLV  287 (299)
T ss_dssp             EECTTSSSSCCEEEE
T ss_pred             ecCCCCCCccceeee
Confidence            666544333334444

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.77  E-value=2.2e-18  Score=151.23  Aligned_cols=135  Identities=18%  Similarity=0.102  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~  107 (291)
                      ...+.+++.+.+.+   +.+|||||||+|.++..+++. +..++|+|+|+.|++.|+++.      ..+.++++|+.+ +
T Consensus        23 ~~~~~l~~~~~~~~---~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~   98 (256)
T 1nkv_A           23 EKYATLGRVLRMKP---GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y   98 (256)
T ss_dssp             HHHHHHHHHTCCCT---TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C
T ss_pred             HHHHHHHHhcCCCC---CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-C
Confidence            55677788887765   779999999999999999987 679999999999999998764      247899999844 5


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC-----------------hHH
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES-----------------VAQ  168 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~-----------------~~~  168 (291)
                      ++ +++||+|+|..+++|+.+           ...+|.+++++|+|||++++...  ...                 ...
T Consensus        99 ~~-~~~fD~V~~~~~~~~~~~-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (256)
T 1nkv_A           99 VA-NEKCDVAACVGATWIAGG-----------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLT  166 (256)
T ss_dssp             CC-SSCEEEEEEESCGGGTSS-----------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCC
T ss_pred             Cc-CCCCCEEEECCChHhcCC-----------HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCC
Confidence            66 789999999999999876           56899999999999999998642  111                 112


Q ss_pred             HHHHHHHHHHcCCCCcE
Q 043626          169 RELILGAAMRAGFAGGV  185 (291)
Q Consensus       169 ~~~i~~~~~~aGF~~~~  185 (291)
                      ...+...+.++||....
T Consensus       167 ~~~~~~~l~~aGf~~~~  183 (256)
T 1nkv_A          167 LPGLVGAFDDLGYDVVE  183 (256)
T ss_dssp             HHHHHHHHHTTTBCCCE
T ss_pred             HHHHHHHHHHCCCeeEE
Confidence            35788889999998733

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.77  E-value=2.1e-18  Score=149.96  Aligned_cols=108  Identities=25%  Similarity=0.312  Sum_probs=93.6

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCCCCCccc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      .+.+++...+   +.+|||||||+|.++..+++.+. .++|+|+|+.|++.|+++..  .+.++.+|+. .+++..++||
T Consensus        34 ~l~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD  109 (243)
T 3bkw_A           34 ALRAMLPEVG---GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLD-KLHLPQDSFD  109 (243)
T ss_dssp             HHHHHSCCCT---TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GCCCCTTCEE
T ss_pred             HHHHhccccC---CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hccCCCCCce
Confidence            4555665444   67999999999999999999987 99999999999999998875  4788999984 4677788999


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +|++..+++|+.+           ...++..++++|+|||++++.+
T Consensus       110 ~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          110 LAYSSLALHYVED-----------VARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeccccccch-----------HHHHHHHHHHhcCcCcEEEEEe
Confidence            9999999999976           6789999999999999999965

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.77  E-value=2.6e-17  Score=137.61  Aligned_cols=122  Identities=24%  Similarity=0.306  Sum_probs=106.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEEC-Cchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~~l~~~~  130 (291)
                      +.+|||||||+|.++..++..+..++|+|+|+.+++.++++...+.++.+|+.. +++++++||+|+++ .+++|+..  
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~~~--  123 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFLAE--  123 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGSCH--
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhcCh--
Confidence            679999999999999999999999999999999999999998889999999854 56777899999998 67887632  


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                             .....++..+.++|+|||.+++.+..........+...+.++||..
T Consensus       124 -------~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~  169 (195)
T 3cgg_A          124 -------DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLEL  169 (195)
T ss_dssp             -------HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEE
T ss_pred             -------HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEE
Confidence                   2267899999999999999999886655556778889999999986

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.76  E-value=1.1e-17  Score=143.58  Aligned_cols=131  Identities=21%  Similarity=0.217  Sum_probs=106.6

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-cceEEEccCCCCCCCCCCcccEE
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-EGDLLLGDMGQGLGLRPGVVDGA  117 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-~~~~~~~D~~~~~~~~~~~fD~V  117 (291)
                      .+++.+...+   +.+|||||||+|.++..|++.+..++|+|+|+.|++.++++.. .+.++.+|+ ..+++. ++||+|
T Consensus        36 ~~l~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~-~~~~~~-~~fD~v  110 (220)
T 3hnr_A           36 DILEDVVNKS---FGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDF-LSFEVP-TSIDTI  110 (220)
T ss_dssp             HHHHHHHHTC---CSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCS-SSCCCC-SCCSEE
T ss_pred             HHHHHhhccC---CCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCCh-hhcCCC-CCeEEE
Confidence            4455554444   6799999999999999999999999999999999999999887 789999998 446766 999999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-CChH---------------------------HH
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-ESVA---------------------------QR  169 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-~~~~---------------------------~~  169 (291)
                      +++.+++|+.+.         ....++.+++++|+|||.+++.... .+..                           ..
T Consensus       111 ~~~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (220)
T 3hnr_A          111 VSTYAFHHLTDD---------EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRI  181 (220)
T ss_dssp             EEESCGGGSCHH---------HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBH
T ss_pred             EECcchhcCChH---------HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCH
Confidence            999999999661         1245999999999999999997522 1111                           23


Q ss_pred             HHHHHHHHHcCCCC
Q 043626          170 ELILGAAMRAGFAG  183 (291)
Q Consensus       170 ~~i~~~~~~aGF~~  183 (291)
                      +.+...+.++||..
T Consensus       182 ~~~~~~l~~aGf~v  195 (220)
T 3hnr_A          182 PVMQTIFENNGFHV  195 (220)
T ss_dssp             HHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHCCCEE
Confidence            67888999999964

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.76  E-value=1.2e-18  Score=151.51  Aligned_cols=132  Identities=23%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             hhhccccccchhHHHHHHHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--
Q 043626           18 TEARKYTSSSRIIDIQAKLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV--   94 (291)
Q Consensus        18 ~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--   94 (291)
                      ..+..|+...........+.+.+.+++... .+  +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++..  
T Consensus         5 ~~a~~yd~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~   82 (246)
T 1y8c_A            5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLV--FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ   82 (246)
T ss_dssp             HHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCC--TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccccccHHHHHHHHHHHHHHhCCC--CCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc
Confidence            455556543221111223444455555332 12  6799999999999999999999999999999999999988754  


Q ss_pred             --cceEEEccCCCCCCCCCCcccEEEECC-chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           95 --EGDLLLGDMGQGLGLRPGVVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        95 --~~~~~~~D~~~~~~~~~~~fD~Vis~~-~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                        .+.++++|+. .+++. ++||+|++.. +++|+.+       + ..+..++.+++++|+|||.+++.+
T Consensus        83 ~~~~~~~~~d~~-~~~~~-~~fD~v~~~~~~l~~~~~-------~-~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A           83 GLKPRLACQDIS-NLNIN-RKFDLITCCLDSTNYIID-------S-DDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             TCCCEEECCCGG-GCCCS-CCEEEEEECTTGGGGCCS-------H-HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCeEEEecccc-cCCcc-CCceEEEEcCccccccCC-------H-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence              5789999984 45665 8999999998 9999843       1 126789999999999999999854

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.76  E-value=1.4e-17  Score=142.17  Aligned_cols=131  Identities=20%  Similarity=0.210  Sum_probs=103.0

Q ss_pred             cCCchhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 043626           14 FYDDTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIAL   90 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~   90 (291)
                      +|+ ..|..|+.......  ........++..+.. +   +.+|||||||+|.++..+   +. .++|+|+|+.|++.++
T Consensus         2 ~fd-~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~---~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~   73 (211)
T 2gs9_A            2 PFA-SLAEAYEAWYGTPLGAYVIAEEERALKGLLP-P---GESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGR   73 (211)
T ss_dssp             TTT-TTTTTTTGGGGSHHHHHHHHHHHHHHHTTCC-C---CSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHH
T ss_pred             chh-hHHHHHHHHhcccchhhhHHHHHHHHHHhcC-C---CCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHH
Confidence            344 56777776432211  112333444544433 3   679999999999999887   66 9999999999999999


Q ss_pred             hcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626           91 EREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus        91 ~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      ++...+.++.+|+ ..+++++++||+|++..+++|+.+           ...++.++.++|+|||.+++.+...
T Consensus        74 ~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           74 RRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFVED-----------VERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             HHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTCSC-----------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             HhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhcCC-----------HHHHHHHHHHHcCCCCEEEEEecCC
Confidence            9887789999998 457888899999999999999976           6789999999999999999987554

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.76  E-value=5.7e-18  Score=151.48  Aligned_cols=121  Identities=19%  Similarity=0.237  Sum_probs=101.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++.      ..+.++.+|+....++.+++||+|++..+++|
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~  148 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW  148 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG
T ss_pred             CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc
Confidence            569999999999999999999999999999999999999865      34789999985433377899999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-------------------------------ChHHHHHHHH
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-------------------------------SVAQRELILG  174 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-------------------------------~~~~~~~i~~  174 (291)
                      +.+           ...++..++++|+|||.+++.++..                               .....+.+..
T Consensus       149 ~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (285)
T 4htf_A          149 VAD-----------PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL  217 (285)
T ss_dssp             CSC-----------HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred             ccC-----------HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence            977           6789999999999999999976421                               1123467888


Q ss_pred             HHHHcCCCC
Q 043626          175 AAMRAGFAG  183 (291)
Q Consensus       175 ~~~~aGF~~  183 (291)
                      ++.++||..
T Consensus       218 ~l~~aGf~v  226 (285)
T 4htf_A          218 WLEEAGWQI  226 (285)
T ss_dssp             HHHHTTCEE
T ss_pred             HHHHCCCce
Confidence            888899975

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.76  E-value=5.7e-18  Score=153.84  Aligned_cols=143  Identities=20%  Similarity=0.220  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEEcc
Q 043626           31 DIQAKLSERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLLGD  102 (291)
Q Consensus        31 ~iq~~~~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D  102 (291)
                      .++....+.+++.+. +.+   +.+|||||||+|.++..|++. +..|+|+|+|+.|++.|+++..      .+.++++|
T Consensus        99 ~~~~~~~~~l~~~l~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  175 (312)
T 3vc1_A           99 RLESAQAEFLMDHLGQAGP---DDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN  175 (312)
T ss_dssp             HHHHHHHHHHHTTSCCCCT---TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             hHHHHHHHHHHHHhccCCC---CCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            344555566777776 544   679999999999999999988 8999999999999999988642      47899999


Q ss_pred             CCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh----------------
Q 043626          103 MGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV----------------  166 (291)
Q Consensus       103 ~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~----------------  166 (291)
                      + ..+++..++||+|+++.+++|+ +           +..+|..++++|+|||++++.......                
T Consensus       176 ~-~~~~~~~~~fD~V~~~~~l~~~-~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  242 (312)
T 3vc1_A          176 M-LDTPFDKGAVTASWNNESTMYV-D-----------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF  242 (312)
T ss_dssp             T-TSCCCCTTCEEEEEEESCGGGS-C-----------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH
T ss_pred             h-hcCCCCCCCEeEEEECCchhhC-C-----------HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh
Confidence            8 4578888999999999999998 4           678999999999999999986532111                


Q ss_pred             ----HHHHHHHHHHHHcCCCCcEEEeC
Q 043626          167 ----AQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       167 ----~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                          ...+.+..++.++||....+.++
T Consensus       243 ~~~~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          243 ECNIHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             TCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence                13466788899999986444444

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.75  E-value=1.1e-17  Score=143.61  Aligned_cols=114  Identities=26%  Similarity=0.278  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----------cceEEEcc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----------EGDLLLGD  102 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D  102 (291)
                      ...+.+++.+...+   +.+|||||||+|.++..+++.+  ..++|+|+|+.|++.|+++..          .+.++.+|
T Consensus        16 ~~~~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           16 QRMNGVVAALKQSN---ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHHHTT---CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHHhcC---CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            44566666665444   6799999999999999999986  699999999999999998753          58899999


Q ss_pred             CCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          103 MGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       103 ~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      + ...++..++||+|+++.+++|+.+         ..+..+++.++++|+|||.+++..
T Consensus        93 ~-~~~~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           93 L-TYQDKRFHGYDAATVIEVIEHLDL---------SRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             T-TSCCGGGCSCSEEEEESCGGGCCH---------HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             c-ccccccCCCcCEEeeHHHHHcCCH---------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence            8 456666789999999999999954         225789999999999999887753

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.75  E-value=6.2e-18  Score=145.87  Aligned_cols=123  Identities=19%  Similarity=0.285  Sum_probs=103.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc----------ceEEEccCCCCCCCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE----------GDLLLGDMGQGLGLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~----------~~~~~~D~~~~~~~~~~~fD~Vis~~  121 (291)
                      +.+|||||||+|.++..++..+..++|+|+|+.|++.|+++...          +.++.+|+ ..+++..++||+|+++.
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCSCTTCEEEEEEES
T ss_pred             CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCCCCCceeEEEEcc
Confidence            67999999999999999999999999999999999999986542          57889998 45778889999999999


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------------------------------------
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------------------------------------  165 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------------------------------------  165 (291)
                      +++|+.+       +. ....+++.++++|+|||++++..+...                                    
T Consensus       110 ~l~~~~~-------~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (235)
T 3sm3_A          110 FLTSVPD-------PK-ERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFI  181 (235)
T ss_dssp             CGGGCCC-------HH-HHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEE
T ss_pred             hhhcCCC-------HH-HHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCccee
Confidence            9999976       11 134899999999999999999754221                                    


Q ss_pred             --hHHHHHHHHHHHHcCCCC
Q 043626          166 --VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       166 --~~~~~~i~~~~~~aGF~~  183 (291)
                        ....+.+..++.++||..
T Consensus       182 ~~~~~~~~l~~ll~~aGf~~  201 (235)
T 3sm3_A          182 AHHFTEKELVFLLTDCRFEI  201 (235)
T ss_dssp             EECBCHHHHHHHHHTTTEEE
T ss_pred             eEeCCHHHHHHHHHHcCCEE
Confidence              124667889999999986

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.75  E-value=1.3e-17  Score=145.51  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=103.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..|+..+ ..++|+|+|+.|++.|+++...     +.++.+|+ ..+++..++||+|++..+++|
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcchhhh
Confidence            6799999999999999998885 6999999999999999987643     67899997 456777789999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------------hHHHHHHHHHHHHcCCCCcEEEe
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------------VAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------------~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      +.+         ..+..++..++++|+|||++++......            ....+.+..++.++||....+..
T Consensus       159 ~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  224 (241)
T 2ex4_A          159 LTD---------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  224 (241)
T ss_dssp             SCH---------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCH---------HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence            855         2256899999999999999999542110            11467888999999998744433

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.75  E-value=3.9e-18  Score=140.72  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=104.8

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEE
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAI  118 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vi  118 (291)
                      .+++.+.+.+   +.+|||||||+|.++..+++.+..++|+|+|+.+++.++++...+.++.+|    .++..++||+|+
T Consensus         8 ~~~~~~~~~~---~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~   80 (170)
T 3i9f_A            8 EYLPNIFEGK---KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFIL   80 (170)
T ss_dssp             TTHHHHHSSC---CEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEE
T ss_pred             HHHHhcCcCC---CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEE
Confidence            3455555554   679999999999999999998789999999999999999987788999888    567788999999


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh----------HHHHHHHHHHHHcCCCCcEEEe
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV----------AQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~----------~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      ++.+++|+.+           ...+++++.++|+|||++++..+....          ...+.+..++.  ||.......
T Consensus        81 ~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~  147 (170)
T 3i9f_A           81 FANSFHDMDD-----------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN  147 (170)
T ss_dssp             EESCSTTCSC-----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred             EccchhcccC-----------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence            9999999976           678999999999999999997543211          13455666666  897633333

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.75  E-value=8.7e-18  Score=145.65  Aligned_cols=133  Identities=25%  Similarity=0.329  Sum_probs=100.7

Q ss_pred             cCCchhhccccccch-----hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHH
Q 043626           14 FYDDTEARKYTSSSR-----IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNI   88 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~-----~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~   88 (291)
                      +|++..+..|+....     .......+.+.+.+.+  ++   +.+|||||||+|.++..+++.+..++|+|+|+.|++.
T Consensus         3 ~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~---~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~   77 (239)
T 3bxo_A            3 MYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRT--PE---ASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTH   77 (239)
T ss_dssp             -CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TT---CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHH
T ss_pred             cccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CC---CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHH
Confidence            455466777766421     1222223333333333  33   6799999999999999999988899999999999999


Q ss_pred             HHhcCCcceEEEccCCCCCCCCCCcccEEEEC-CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           89 ALEREVEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        89 a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+++...+.++.+|+.. +++ +++||+|+|. .+++|+.+       + ..+..++..++++|+|||.+++..
T Consensus        78 a~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~~~~~~~~-------~-~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           78 ARKRLPDATLHQGDMRD-FRL-GRKFSAVVSMFSSVGYLKT-------T-EELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             HHHHCTTCEEEECCTTT-CCC-SSCEEEEEECTTGGGGCCS-------H-HHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHhCCCCEEEECCHHH-ccc-CCCCcEEEEcCchHhhcCC-------H-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence            99998889999999844 565 7899999964 58999854       1 226789999999999999999963

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.75  E-value=3.3e-17  Score=140.74  Aligned_cols=115  Identities=23%  Similarity=0.250  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----------cceEEEc
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----------EGDLLLG  101 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----------~~~~~~~  101 (291)
                      ....+.+++.+...+   +.+|||||||+|.++..+++.+  ..++|+|+|+.|++.|+++..          .+.++.+
T Consensus        15 ~~~~~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVN---AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHHHTT---CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHhhcC---CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            344555666665444   6799999999999999999987  699999999999999998754          5789999


Q ss_pred             cCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          102 DMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+ ...++..++||+|++..+++|+.+         ..+..+++.++++|+|||.+++..
T Consensus        92 d~-~~~~~~~~~fD~V~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           92 SL-VYRDKRFSGYDAATVIEVIEHLDE---------NRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             CS-SSCCGGGTTCSEEEEESCGGGCCH---------HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             cc-cccccccCCCCEEEEHHHHHhCCH---------HHHHHHHHHHHHhhCCCEEEEEcc
Confidence            98 556777789999999999999954         125789999999999999777653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.75  E-value=8.7e-18  Score=146.03  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=103.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..|+..+..|+|+|+|+.|++.|+++...      +.++++|+.+ ++ ..++||+|+++.+++|
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhhhc
Confidence            35999999999999999999899999999999999999987654      7899999855 33 3569999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh--------HHHHHHHHHHHHcCCCCcEEEeC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV--------AQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~--------~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      ++..+         ...++..++++|+|||.+++..++...        ...+.+..++.++||....+...
T Consensus       145 ~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          145 IEPEM---------RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             SCGGG---------HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred             CCHHH---------HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence            86211         678999999999999999987664321        24678888999999986333333

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.74  E-value=3.2e-17  Score=146.63  Aligned_cols=119  Identities=24%  Similarity=0.290  Sum_probs=99.7

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcC------CcceEEE
Q 043626           28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS-ENGHQWIGLDISQSMLNIALERE------VEGDLLL  100 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~  100 (291)
                      .+...+..+.+.+++.+.+.+   +.+|||||||+|.++..++ ..+..|+|+|+|+.+++.|+++.      ..+.++.
T Consensus        44 ~l~~a~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~  120 (287)
T 1kpg_A           44 TLQEAQIAKIDLALGKLGLQP---GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL  120 (287)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE
T ss_pred             CHHHHHHHHHHHHHHHcCCCC---cCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            356677778888888887766   6799999999999999998 45789999999999999998864      2578899


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +|+ ..++   ++||+|++..+++|+...+         ...+|.+++++|+|||.+++...
T Consensus       121 ~d~-~~~~---~~fD~v~~~~~l~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          121 AGW-EQFD---EPVDRIVSIGAFEHFGHER---------YDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             SCG-GGCC---CCCSEEEEESCGGGTCTTT---------HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCh-hhCC---CCeeEEEEeCchhhcChHH---------HHHHHHHHHHhcCCCCEEEEEEe
Confidence            998 3344   8999999999999994321         67899999999999999999753

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.74  E-value=2.6e-17  Score=148.64  Aligned_cols=125  Identities=21%  Similarity=0.275  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEEc
Q 043626           29 IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLLG  101 (291)
Q Consensus        29 ~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~~  101 (291)
                      +...+....+.+++.+.+.+   +.+|||||||+|.++..+++. +..|+|+|+|+.|++.|+++..      .+.++.+
T Consensus        53 l~~a~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  129 (302)
T 3hem_A           53 LEEAQYAKRKLALDKLNLEP---GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ  129 (302)
T ss_dssp             HHHHHHHHHHHHHHTTCCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCCC---cCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            55667778888899887776   779999999999999999988 8999999999999999988743      3789999


Q ss_pred             cCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          102 DMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      |+.+ +   +++||+|+++.+++|++++..  ..+...+..+|.++.++|+|||++++...
T Consensus       130 d~~~-~---~~~fD~v~~~~~~~~~~d~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          130 GWEE-F---DEPVDRIVSLGAFEHFADGAG--DAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             CGGG-C---CCCCSEEEEESCGGGTTCCSS--CCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             CHHH-c---CCCccEEEEcchHHhcCcccc--ccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            9843 3   789999999999999976321  00223367999999999999999999754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.74  E-value=1.2e-17  Score=156.27  Aligned_cols=122  Identities=25%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC-------------CcceEEEccCCCC--C---CCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE-------------VEGDLLLGDMGQG--L---GLR  110 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~-------------~~~~~~~~D~~~~--~---~~~  110 (291)
                      +.+|||||||+|.++..|++.   +..|+|+|+|+.|++.|+++.             .++.++.+|+...  +   +++
T Consensus        84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~  163 (383)
T 4fsd_A           84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP  163 (383)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred             CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence            679999999999999999875   469999999999999999873             4689999998542  1   788


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-CC-------------------hHHHH
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-ES-------------------VAQRE  170 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-~~-------------------~~~~~  170 (291)
                      +++||+|+++.+++|+.+           ...+|.+++++|+|||++++.... ..                   ....+
T Consensus       164 ~~~fD~V~~~~~l~~~~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (383)
T 4fsd_A          164 DSSVDIVISNCVCNLSTN-----------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLE  232 (383)
T ss_dssp             TTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHH
T ss_pred             CCCEEEEEEccchhcCCC-----------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHH
Confidence            899999999999999977           679999999999999999996422 11                   01237


Q ss_pred             HHHHHHHHcCCCCc
Q 043626          171 LILGAAMRAGFAGG  184 (291)
Q Consensus       171 ~i~~~~~~aGF~~~  184 (291)
                      .+..++.++||...
T Consensus       233 ~~~~ll~~aGF~~v  246 (383)
T 4fsd_A          233 DFRRLVAEAGFRDV  246 (383)
T ss_dssp             HHHHHHHHTTCCCE
T ss_pred             HHHHHHHHCCCceE
Confidence            78899999999863

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.74  E-value=5.9e-18  Score=145.10  Aligned_cols=137  Identities=19%  Similarity=0.203  Sum_probs=106.3

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC--CCCCC-C
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG--LGLRP-G  112 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~--~~~~~-~  112 (291)
                      ....+++.+....   +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++ ..+.+...|+...  .++.. +
T Consensus        40 ~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~  115 (227)
T 3e8s_A           40 TDQAILLAILGRQ---PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGK  115 (227)
T ss_dssp             HHHHHHHHHHHTC---CSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCC
T ss_pred             ccHHHHHHhhcCC---CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCC
Confidence            3345566655544   67999999999999999999999999999999999999988 5677888776432  14444 4


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---------------------------
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---------------------------  165 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---------------------------  165 (291)
                      +||+|+++.+++ ..+           ...++..++++|+|||++++......                           
T Consensus       116 ~fD~v~~~~~l~-~~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (227)
T 3e8s_A          116 DYDLICANFALL-HQD-----------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMP  183 (227)
T ss_dssp             CEEEEEEESCCC-SSC-----------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEE
T ss_pred             CccEEEECchhh-hhh-----------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccce
Confidence            599999999998 444           56899999999999999999764110                           


Q ss_pred             --hHHHHHHHHHHHHcCCCCcEEEe
Q 043626          166 --VAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       166 --~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                        ....+.+..++.++||....+..
T Consensus       184 ~~~~~~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          184 WYFRTLASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             EEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred             EEEecHHHHHHHHHHcCCeEEEEec
Confidence              11567899999999998733333

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.74  E-value=1.4e-17  Score=147.46  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----------------------CcceEEEccCCCCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----------------------VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----------------------~~~~~~~~D~~~~~~~  109 (291)
                      +.+|||+|||+|..+..|++.|..|+|||+|+.|++.|+++.                      ..+.++++|+.+ +++
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~-l~~  147 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD-LPR  147 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT-GGG
T ss_pred             CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc-CCc
Confidence            679999999999999999999999999999999999997643                      357899999944 565


Q ss_pred             CC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .. ++||+|++..+++|++..+         ...+++.++++|+|||++++.
T Consensus       148 ~~~~~FD~V~~~~~l~~l~~~~---------~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAINPGD---------HDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GCCCCEEEEEESSSTTTSCGGG---------HHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCCEEEEEEhhhhhhCCHHH---------HHHHHHHHHHHcCCCeEEEEE
Confidence            43 8999999999999985422         467999999999999999754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.74  E-value=1.5e-17  Score=147.66  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=99.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----------------------------------cc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----------------------------------EG   96 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----------------------------------~~   96 (291)
                      +.+|||||||+|..+..++..+ ..|+|+|+|+.|++.|+++..                                  .+
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV  135 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred             CceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhh
Confidence            6799999999999888877777 579999999999999886421                                  02


Q ss_pred             -eEEEccCCCCCCCC---CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------
Q 043626           97 -DLLLGDMGQGLGLR---PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------  165 (291)
Q Consensus        97 -~~~~~D~~~~~~~~---~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------  165 (291)
                       .++.+|+....|+.   .++||+|+++.++||++.       ....+..++.+++++|||||.|++......       
T Consensus       136 ~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~-------~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~  208 (263)
T 2a14_A          136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC-------SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  208 (263)
T ss_dssp             EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-------SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             heEEeccccCCCCCCccccCCCCEeeehHHHHHhcC-------CHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCC
Confidence             28899997654543   579999999999999743       112367899999999999999999752211       


Q ss_pred             ------hHHHHHHHHHHHHcCCCCcEEEe
Q 043626          166 ------VAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       166 ------~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                            ....+.+...+.++||....+..
T Consensus       209 ~~~~~~~~~~~~l~~~l~~aGF~i~~~~~  237 (263)
T 2a14_A          209 REFSCVALEKGEVEQAVLDAGFDIEQLLH  237 (263)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence                  12466889999999998633333

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.73  E-value=1e-16  Score=145.60  Aligned_cols=119  Identities=24%  Similarity=0.303  Sum_probs=99.7

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626           28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLL  100 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~  100 (291)
                      .+...+..+.+.+++.+.+.+   +.+|||||||+|.++..+++. +..|+|+|+|+.|++.|+++..      .+.++.
T Consensus        70 ~l~~~~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~  146 (318)
T 2fk8_A           70 TLEEAQYAKVDLNLDKLDLKP---GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL  146 (318)
T ss_dssp             CHHHHHHHHHHHHHTTSCCCT---TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE
T ss_pred             CHHHHHHHHHHHHHHhcCCCC---cCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            355667778888888887765   679999999999999999987 8999999999999999988642      378899


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +|+. .++   ++||+|++..+++|+...+         +..++.++.++|+|||++++...
T Consensus       147 ~d~~-~~~---~~fD~v~~~~~l~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          147 QGWE-DFA---EPVDRIVSIEAFEHFGHEN---------YDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             SCGG-GCC---CCCSEEEEESCGGGTCGGG---------HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CChH-HCC---CCcCEEEEeChHHhcCHHH---------HHHHHHHHHHhcCCCcEEEEEEe
Confidence            9983 343   7899999999999994311         67899999999999999999754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.73  E-value=4.5e-17  Score=136.28  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||||||+|.++..|++.+.+|+|+|+|+.|++.|+++.     ..+.+++.|+.....+.+++||+|+++.  .++
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~--~~~  100 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL--GYL  100 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE--C--
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC--CCC
Confidence            679999999999999999999999999999999999998875     3478888766332224478999999872  333


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---hHHHHHHHHHHHHcC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---VAQRELILGAAMRAG  180 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---~~~~~~i~~~~~~aG  180 (291)
                      +..+............++..++++|+|||++++..++..   ......+..++....
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~  157 (185)
T 3mti_A          101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLD  157 (185)
T ss_dssp             ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSC
T ss_pred             CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            332222222233356889999999999999999887643   234445555555443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.73  E-value=2.3e-17  Score=145.21  Aligned_cols=131  Identities=18%  Similarity=0.075  Sum_probs=102.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCc----------------------------------c
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREVE----------------------------------G   96 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~~----------------------------------~   96 (291)
                      +.+|||||||+|.++..++..+. .|+|+|+|+.|++.|+++...                                  +
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v  136 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAI  136 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHE
T ss_pred             CCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhh
Confidence            57999999999999999998886 999999999999999876532                                  5


Q ss_pred             -eEEEccCCCCCCCCC---CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--------
Q 043626           97 -DLLLGDMGQGLGLRP---GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--------  164 (291)
Q Consensus        97 -~~~~~D~~~~~~~~~---~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--------  164 (291)
                       .++.+|+.+..++.+   ++||+|+++.+++|++..       ...+..++.+++++|+|||.+++.....        
T Consensus       137 ~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~  209 (265)
T 2i62_A          137 KQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPD-------LPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGE  209 (265)
T ss_dssp             EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS-------HHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             eeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCC-------hHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCC
Confidence             789999866444455   899999999999966431       1226789999999999999999865221        


Q ss_pred             -----ChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          165 -----SVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       165 -----~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                           .....+.+..++.++||....+...
T Consensus       210 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  239 (265)
T 2i62_A          210 QKFSSLPLGWETVRDAVEEAGYTIEQFEVI  239 (265)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccccccccCHHHHHHHHHHCCCEEEEEEEe
Confidence                 1124568889999999986333333

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.72  E-value=2.6e-17  Score=146.28  Aligned_cols=98  Identities=21%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|.++..+++.  +..++|+|+|+.|++.|+++.     .++.++.+|+ ..+++.+++||+|++..+++
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~  116 (276)
T 3mgg_A           38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI-FSLPFEDSSFDHIFVCFVLE  116 (276)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG-GGCCSCTTCEEEEEEESCGG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc-ccCCCCCCCeeEEEEechhh
Confidence            779999999999999999988  589999999999999998864     3578999998 45778889999999999999


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+.+           ...++..++++|+|||.+++..
T Consensus       117 ~~~~-----------~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          117 HLQS-----------PEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             GCSC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCC-----------HHHHHHHHHHHcCCCcEEEEEE
Confidence            9977           6689999999999999999864

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.72  E-value=9.8e-17  Score=142.74  Aligned_cols=132  Identities=12%  Similarity=0.000  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C--C-CC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L--G-LR  110 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~--~-~~  110 (291)
                      ...+.+++.+.+.+   +.+|||||||+|.++..|++.|..|+|+|+|+.|++.|+++.... ++..++... .  + ..
T Consensus        32 ~~~~~il~~l~l~~---g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~  107 (261)
T 3iv6_A           32 SDRENDIFLENIVP---GSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKEL  107 (261)
T ss_dssp             CHHHHHHHTTTCCT---TCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGG
T ss_pred             HHHHHHHHhcCCCC---cCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-cceeeeeeccccccccc
Confidence            45667788887776   789999999999999999999999999999999999999887542 233333211 1  1 12


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                      .++||+|+++.+++|+..         .....++..++++| |||++++++.......-..+.......|
T Consensus       108 ~~~fD~Vv~~~~l~~~~~---------~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g  167 (261)
T 3iv6_A          108 AGHFDFVLNDRLINRFTT---------EEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSG  167 (261)
T ss_dssp             TTCCSEEEEESCGGGSCH---------HHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTT
T ss_pred             CCCccEEEEhhhhHhCCH---------HHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcC
Confidence            578999999999998743         23678999999999 9999999876543333333333334444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.71  E-value=2e-17  Score=148.50  Aligned_cols=146  Identities=16%  Similarity=0.060  Sum_probs=102.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCc-------------------
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVE-------------------   95 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~-------------------   95 (291)
                      ....+++.+..... .+.+|||||||+|.....++. .+..|+|+|+|+.|++.|+++...                   
T Consensus        57 ~~~~l~~~l~~~~~-~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~  135 (289)
T 2g72_A           57 KLRCLAQTFATGEV-SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG  135 (289)
T ss_dssp             HHHHHHHHHHTSCS-CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCC-CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence            34455555533210 167999999999995554444 368999999999999998874321                   


Q ss_pred             ----------------ceEEEccCCCCCCC-----CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC
Q 043626           96 ----------------GDLLLGDMGQGLGL-----RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG  154 (291)
Q Consensus        96 ----------------~~~~~~D~~~~~~~-----~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg  154 (291)
                                      +.++.+|+...+|+     ++++||+|+|+.+++|++..       ...+..+|.+++++||||
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------~~~~~~~l~~~~r~LkpG  208 (289)
T 2g72_A          136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD-------LASFQRALDHITTLLRPG  208 (289)
T ss_dssp             SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS-------HHHHHHHHHHHHTTEEEE
T ss_pred             cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCC-------HHHHHHHHHHHHHhcCCC
Confidence                            24667788654553     35679999999999996431       112778999999999999


Q ss_pred             cEEEEEEc-------------CCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          155 ARAVFQIY-------------PESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       155 G~lv~~~~-------------~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      |+|++...             +......+.+..++.++||....+..+
T Consensus       209 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY  256 (289)
T ss_dssp             EEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence            99998521             111235678889999999986333333

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.71  E-value=6.6e-17  Score=138.42  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~  111 (291)
                      .+...+...+...+   +.+|||||||+|.++..|++.+..++|+|+|+.|++.|+++..   .+.++++|+.+ ++ .+
T Consensus        38 ~~~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~-~~  112 (216)
T 3ofk_A           38 RHTQLLRLSLSSGA---VSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQ-FS-TA  112 (216)
T ss_dssp             HHHHHHHHHTTTSS---EEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTT-CC-CS
T ss_pred             HHHHHHHHHcccCC---CCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhh-CC-CC
Confidence            33333444444443   6799999999999999999999999999999999999998764   47899999854 44 57


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ++||+|+++.+++|+.+       | ..+..++..++++|+|||.+++.+
T Consensus       113 ~~fD~v~~~~~l~~~~~-------~-~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLED-------M-TQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             CCEEEEEEESCGGGSSS-------H-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEEccHHHhCCC-------H-HHHHHHHHHHHHHcCCCCEEEEEe
Confidence            89999999999999965       2 225688999999999999999975

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.71  E-value=6.5e-18  Score=151.42  Aligned_cols=145  Identities=19%  Similarity=0.224  Sum_probs=103.3

Q ss_pred             CCcccCCchhhccccccch-hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHH
Q 043626           10 PPEIFYDDTEARKYTSSSR-IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNI   88 (291)
Q Consensus        10 ppe~fy~~~~a~~Y~~~~~-~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~   88 (291)
                      -|+.|++...+..|+.... .......+.+.+++++...+   +.+|||||||+|.++..|++.+..|+|+|+|+.|++.
T Consensus        18 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~   94 (293)
T 3thr_A           18 IPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHG---CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY   94 (293)
T ss_dssp             SCCTTTTCHHHHHHHHHHTCCSCBCHHHHHHHHHHHHHTT---CCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ChhhhcCchHHHHHHHHHhcCcchHHHHHHHHHHHhcccC---CCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHH
Confidence            3455665555545542110 00011233344555554444   6799999999999999999999999999999999999


Q ss_pred             HHhcC---------CcceEEEccCCCCCC---CCCCcccEEEEC-CchhhhccccccCCchHHHHHHHHHHHHHhccCCc
Q 043626           89 ALERE---------VEGDLLLGDMGQGLG---LRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGA  155 (291)
Q Consensus        89 a~~~~---------~~~~~~~~D~~~~~~---~~~~~fD~Vis~-~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG  155 (291)
                      |+++.         ..+.+..+|+ ..++   +..++||+|+|. .+++|+.+..    ........++++++++|+|||
T Consensus        95 a~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~----~~~~~~~~~l~~~~~~LkpgG  169 (293)
T 3thr_A           95 ALKERWNRRKEPAFDKWVIEEANW-LTLDKDVPAGDGFDAVICLGNSFAHLPDSK----GDQSEHRLALKNIASMVRPGG  169 (293)
T ss_dssp             HHHHHHHTTTSHHHHTCEEEECCG-GGHHHHSCCTTCEEEEEECTTCGGGSCCSS----SSSHHHHHHHHHHHHTEEEEE
T ss_pred             HHHhhhhcccccccceeeEeecCh-hhCccccccCCCeEEEEEcChHHhhcCccc----cCHHHHHHHHHHHHHHcCCCe
Confidence            98753         2357788887 3345   678899999998 8999996511    011236789999999999999


Q ss_pred             EEEEEEc
Q 043626          156 RAVFQIY  162 (291)
Q Consensus       156 ~lv~~~~  162 (291)
                      ++++.+.
T Consensus       170 ~l~~~~~  176 (293)
T 3thr_A          170 LLVIDHR  176 (293)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9999874

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.71  E-value=1.2e-16  Score=143.15  Aligned_cols=111  Identities=20%  Similarity=0.302  Sum_probs=92.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLG  108 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~  108 (291)
                      +...+++.+....+  +.+|||||||+|.++..+++.   +..++|+|+|+.|++.|+++..    ++.++++|+. .++
T Consensus         9 ~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~   85 (284)
T 3gu3_A            9 YVSFLVNTVWKITK--PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE   85 (284)
T ss_dssp             HHHHHHHTTSCCCS--CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC
T ss_pred             HHHHHHHHHhccCC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC
Confidence            34455555533222  789999999999999999987   5799999999999999988643    5789999995 466


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      + +++||+|++..+++|+.+           ...++.+++++|+|||.+++..
T Consensus        86 ~-~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           86 L-NDKYDIAICHAFLLHMTT-----------PETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             C-SSCEEEEEEESCGGGCSS-----------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-CCCeeEEEECChhhcCCC-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence            6 579999999999999977           6799999999999999999865

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.70  E-value=1.7e-16  Score=138.86  Aligned_cols=137  Identities=9%  Similarity=0.012  Sum_probs=103.1

Q ss_pred             CCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCC---CCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLR---PGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~---~~~fD~Vis~~  121 (291)
                      +.+|||||||+|..+..|+.  .+.+|+|+|+|+.|++.|+++.     .++.++++|+.+ +++.   .++||+|+|..
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAET-FGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHH-HTTCTTTTTCEEEEEEEC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHH-hcccccccCCccEEEEec
Confidence            67999999999999999985  3589999999999999998753     358899998843 4443   57999999865


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLV  201 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~  201 (291)
                      +    .+           +..++..++++|+|||.+++...+........+...+..+||....+..+.........+++
T Consensus       150 ~----~~-----------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~  214 (240)
T 1xdz_A          150 V----AR-----------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIM  214 (240)
T ss_dssp             C----SC-----------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEE
T ss_pred             c----CC-----------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEE
Confidence            2    22           67899999999999999999876666677788888999999976333333222223334444


Q ss_pred             Eee
Q 043626          202 LTC  204 (291)
Q Consensus       202 l~~  204 (291)
                      ++.
T Consensus       215 ~~~  217 (240)
T 1xdz_A          215 VIR  217 (240)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.70  E-value=8.6e-16  Score=130.65  Aligned_cols=128  Identities=16%  Similarity=0.118  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      .+...+++.+.+.+   +.+|||||||+|.++..++..+  ..++|+|+|+.+++.|+++.     ..+.++.+|+.+.+
T Consensus        27 ~i~~~~l~~l~~~~---~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  103 (204)
T 3e05_A           27 EVRAVTLSKLRLQD---DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL  103 (204)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred             HHHHHHHHHcCCCC---CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence            45566777877766   7899999999999999999987  89999999999999998864     35789999985544


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                      + ..++||+|++..+++   +           +..++..+.++|+|||++++....  ......+...+.++||.
T Consensus       104 ~-~~~~~D~i~~~~~~~---~-----------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          104 D-DLPDPDRVFIGGSGG---M-----------LEEIIDAVDRRLKSEGVIVLNAVT--LDTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             T-TSCCCSEEEESCCTT---C-----------HHHHHHHHHHHCCTTCEEEEEECB--HHHHHHHHHHHHHTTCE
T ss_pred             h-cCCCCCEEEECCCCc---C-----------HHHHHHHHHHhcCCCeEEEEEecc--cccHHHHHHHHHHCCCc
Confidence            3 236899999987765   2           568999999999999999998643  35677888899999993

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.70  E-value=3e-17  Score=148.08  Aligned_cols=131  Identities=22%  Similarity=0.298  Sum_probs=99.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC-----------------------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV-----------------------------------   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~-----------------------------------   94 (291)
                      +.+|||||||+|.++..|+..  +..|+|+|+|+.|++.|+++..                                   
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            679999999999999999987  5899999999999999988642                                   


Q ss_pred             ----------------------------cceEEEccCCCCC----CCCCCcccEEEECCchhhhccccccCCchHHHHHH
Q 043626           95 ----------------------------EGDLLLGDMGQGL----GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKA  142 (291)
Q Consensus        95 ----------------------------~~~~~~~D~~~~~----~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~  142 (291)
                                                  .+.++++|+....    ++..++||+|+|.++++|+.-     ..+...+..
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl-----~~~~~~~~~  201 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL-----NWGDEGLKR  201 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHH-----HHHHHHHHH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhh-----cCCHHHHHH
Confidence                                        4788889885432    356789999999999988730     002233789


Q ss_pred             HHHHHHHhccCCcEEEEEEcCCCh---------H----------HHHHHHHHHHH--cCCCCcEEE
Q 043626          143 FFGSLYRCLARGARAVFQIYPESV---------A----------QRELILGAAMR--AGFAGGVVV  187 (291)
Q Consensus       143 ~l~~l~~~LkpgG~lv~~~~~~~~---------~----------~~~~i~~~~~~--aGF~~~~~~  187 (291)
                      +|+.++++|+|||+|++...+...         .          ..+.+..++..  +||....++
T Consensus       202 ~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~  267 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELV  267 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence            999999999999999996432110         0          12356667777  899763333

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.70  E-value=1.7e-16  Score=136.12  Aligned_cols=129  Identities=20%  Similarity=0.264  Sum_probs=104.8

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC-CCCCCCCcccE
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ-GLGLRPGVVDG  116 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~-~~~~~~~~fD~  116 (291)
                      ..+++++. .+   +.+|||||||+|.++..+++.+..++|+|+|+.+++.++++..  .++.+|+.. ..++.+++||+
T Consensus        23 ~~l~~~~~-~~---~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~   96 (230)
T 3cc8_A           23 PNLLKHIK-KE---WKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDC   96 (230)
T ss_dssp             HHHHTTCC-TT---CSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEE
T ss_pred             HHHHHHhc-cC---CCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCE
Confidence            44555554 23   6799999999999999999889999999999999999998764  688899854 25677889999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC---------------------------ChHHH
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE---------------------------SVAQR  169 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~---------------------------~~~~~  169 (291)
                      |++..+++|+.+           ...++..+.++|+|||.+++.+...                           .....
T Consensus        97 v~~~~~l~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (230)
T 3cc8_A           97 VIFGDVLEHLFD-----------PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTF  165 (230)
T ss_dssp             EEEESCGGGSSC-----------HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCH
T ss_pred             EEECChhhhcCC-----------HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecH
Confidence            999999999976           5689999999999999999975321                           11235


Q ss_pred             HHHHHHHHHcCCCC
Q 043626          170 ELILGAAMRAGFAG  183 (291)
Q Consensus       170 ~~i~~~~~~aGF~~  183 (291)
                      +.+..++.++||..
T Consensus       166 ~~~~~~l~~~Gf~~  179 (230)
T 3cc8_A          166 NEMLRMFLKAGYSI  179 (230)
T ss_dssp             HHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHcCCeE
Confidence            67778888888875

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.69  E-value=3.4e-16  Score=138.33  Aligned_cols=128  Identities=23%  Similarity=0.301  Sum_probs=98.7

Q ss_pred             hhhccccccchhHH---HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC
Q 043626           18 TEARKYTSSSRIID---IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        18 ~~a~~Y~~~~~~~~---iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      ..+..|+.......   ....+.+.+.+++.  +   +.+|||||||+|.++..+++.+..++|+|+|+.|++.|+++..
T Consensus        23 ~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~--~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           23 RIARAYDSMYETPKWKLYHRLIGSFLEEYLK--N---PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             HHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC--S---CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhccccchhHHHHHHHHHHHHhcC--C---CCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC
Confidence            56677766542222   12222333333332  3   6799999999999999999999999999999999999998876


Q ss_pred             cceEEEccCCCCCCCCCCcccEEEECCchhhh-ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           95 EGDLLLGDMGQGLGLRPGVVDGAISISAVQWL-CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        95 ~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l-~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      . .++.+|+ ..+++++++||+|++..++.|+ .+           ...++.+++++|+|||.+++.+..
T Consensus        98 ~-~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A           98 K-NVVEAKA-EDLPFPSGAFEAVLALGDVLSYVEN-----------KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             S-CEEECCT-TSCCSCTTCEEEEEECSSHHHHCSC-----------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             C-CEEECcH-HHCCCCCCCEEEEEEcchhhhcccc-----------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            3 4888998 4577888999999998877666 44           678999999999999999998753

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.9e-16  Score=142.78  Aligned_cols=109  Identities=19%  Similarity=0.323  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH---cCCeEEEEeCCHHHHHHHHhc-------CCcceEEEccCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE---NGHQWIGLDISQSMLNIALER-------EVEGDLLLGDMG  104 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~---~g~~v~gvDis~~ml~~a~~~-------~~~~~~~~~D~~  104 (291)
                      .+.+.+..++. .+   +.+|||||||+|..+..|++   .+..|+|+|+|+.|++.|+++       ...+.++++|+ 
T Consensus        24 ~~~~~l~~~~~-~~---~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~-   98 (299)
T 3g5t_A           24 DFYKMIDEYHD-GE---RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS-   98 (299)
T ss_dssp             HHHHHHHHHCC-SC---CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-
T ss_pred             HHHHHHHHHhc-CC---CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-
Confidence            44455555543 23   67999999999999999994   568999999999999999886       45689999998 


Q ss_pred             CCCCCCC------CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          105 QGLGLRP------GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       105 ~~~~~~~------~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+++..      ++||+|+++.+++|+ +           +..++..+.++|+|||.+++.
T Consensus        99 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~-----------~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A           99 DDFKFLGADSVDKQKIDMITAVECAHWF-D-----------FEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             TCCGGGCTTTTTSSCEEEEEEESCGGGS-C-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhCCccccccccCCCeeEEeHhhHHHHh-C-----------HHHHHHHHHHhcCCCcEEEEE
Confidence            4466666      899999999999999 6           789999999999999999984

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.69  E-value=1.9e-16  Score=133.18  Aligned_cols=109  Identities=19%  Similarity=0.266  Sum_probs=91.1

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~  113 (291)
                      .+++.+...+   +.+|||||||+|.++..+++.+..++|+|+|+.+++.++++.     ..+.++.+|+. .+++ +++
T Consensus        23 ~l~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~   97 (199)
T 2xvm_A           23 EVLEAVKVVK---PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQ   97 (199)
T ss_dssp             HHHHHTTTSC---SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCC
T ss_pred             HHHHHhhccC---CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCC
Confidence            4555666555   679999999999999999999999999999999999998754     25789999984 4666 789


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ||+|++..+++|+...+         ...++..+.++|+|||.+++..
T Consensus        98 ~D~v~~~~~l~~~~~~~---------~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKT---------IPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEEEEEESCGGGSCGGG---------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceEEEEcchhhhCCHHH---------HHHHHHHHHHhcCCCeEEEEEE
Confidence            99999999999985311         6789999999999999987643

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.69  E-value=1.6e-16  Score=134.95  Aligned_cols=102  Identities=21%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCchh-HHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLS-GETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~-~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||||||+|.. ...++..+..++|+|+|+.|++.|+++.    ..+.++.+|+. .+++++++||+|++..+++|+
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~  102 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGTIFHM  102 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSCGGGS
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcChHHhC
Confidence            67999999999997 5666677899999999999999998764    35789999984 477878999999999999998


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ..         .....++.+++++|+|||.+++.++.
T Consensus       103 ~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A          103 RK---------NDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             CH---------HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CH---------HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            31         22778999999999999999998754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.68  E-value=2.2e-16  Score=139.97  Aligned_cols=120  Identities=16%  Similarity=0.158  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHH------HHHHHHhcC------
Q 043626           29 IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQS------MLNIALERE------   93 (291)
Q Consensus        29 ~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~------ml~~a~~~~------   93 (291)
                      +...|......+++.+.+.+   +.+|||||||+|.++..+++. |  ..++|+|+|+.      |++.|+++.      
T Consensus        24 ~~~~~~~~~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~  100 (275)
T 3bkx_A           24 IQRRQTAHRLAIAEAWQVKP---GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG  100 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTCCT---TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG
T ss_pred             HHHHHHHHHHHHHHHcCCCC---CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC
Confidence            45567778888888888776   779999999999999999987 4  79999999997      899988764      


Q ss_pred             CcceEEEcc-CC-CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626           94 VEGDLLLGD-MG-QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus        94 ~~~~~~~~D-~~-~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ..+.++.+| +. ..+++.+++||+|+++.+++|+.+           ...+++.+..+++|||++++..+
T Consensus       101 ~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          101 DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS-----------ANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC-----------HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             CceEEEECChhhhccCCCCCCCEEEEEEccchhhCCC-----------HHHHHHHHHHHhCCCCEEEEEEe
Confidence            247888887 32 345677899999999999999976           34577777777888999999653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.68  E-value=2.7e-16  Score=136.52  Aligned_cols=129  Identities=27%  Similarity=0.423  Sum_probs=96.8

Q ss_pred             CCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-
Q 043626           15 YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-   93 (291)
Q Consensus        15 y~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-   93 (291)
                      |+ ..|..|+....... ...+.+.+++.+.  +   +.+|||||||+|.++..+++. ..++|+|+|+.|++.|+++. 
T Consensus         4 y~-~~a~~yd~~~~~~~-~~~~~~~~~~~~~--~---~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~   75 (243)
T 3d2l_A            4 YE-QFAYVYDELMQDVP-YPEWVAWVLEQVE--P---GKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAM   75 (243)
T ss_dssp             ---CTTHHHHHHTTTCC-HHHHHHHHHHHSC--T---TCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHhhhccc-HHHHHHHHHHHcC--C---CCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhh
Confidence            44 56666765322111 2245555666543  2   469999999999999999988 89999999999999998864 


Q ss_pred             ---CcceEEEccCCCCCCCCCCcccEEEECC-chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           94 ---VEGDLLLGDMGQGLGLRPGVVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        94 ---~~~~~~~~D~~~~~~~~~~~fD~Vis~~-~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                         ..+.++.+|+. .+++. ++||+|++.. +++|+.+        ...+..+++.++++|+|||.+++.+
T Consensus        76 ~~~~~~~~~~~d~~-~~~~~-~~fD~v~~~~~~~~~~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           76 ETNRHVDFWVQDMR-ELELP-EPVDAITILCDSLNYLQT--------EADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             HTTCCCEEEECCGG-GCCCS-SCEEEEEECTTGGGGCCS--------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCCceEEEEcChh-hcCCC-CCcCEEEEeCCchhhcCC--------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence               35789999984 45554 8999999987 8999843        1236789999999999999999853

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.68  E-value=1.1e-15  Score=132.25  Aligned_cols=136  Identities=12%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             CCeEEEEcCC-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCG-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcG-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||+||| +|.++..++.. +..|+|+|+|+.|++.|+++..    .+.++++|+....++.+++||+|+++..+++
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~  135 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYD  135 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC-
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcC
Confidence            6799999999 99999999998 7999999999999999987642    5789999974444566789999999977766


Q ss_pred             hcccccc--------CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          126 LCNADKA--------SHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       126 l~~~~~~--------~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      ..+....        .......+..++..+.++|+|||++++.+ +........+...+.+.||.. ..+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~l~~~g~~~-~~~~~  205 (230)
T 3evz_A          136 KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL-PDKEKLLNVIKERGIKLGYSV-KDIKF  205 (230)
T ss_dssp             --------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE-ESCHHHHHHHHHHHHHTTCEE-EEEEE
T ss_pred             CccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe-cccHhHHHHHHHHHHHcCCce-EEEEe
Confidence            5432110        00111224789999999999999999975 444567888999999999965 44444

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.68  E-value=3.5e-16  Score=134.48  Aligned_cols=101  Identities=25%  Similarity=0.386  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||||||+|.++..++..+..++|+|+|+.|++.|+++.    ..+.++++|+. .+++++++||+|+++.++++..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~~~  117 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR-KLSFEDKTFDYVIFIDSIVHFE  117 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT-SCCSCTTCEEEEEEESCGGGCC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchh-cCCCCCCcEEEEEEcCchHhCC
Confidence            569999999999999999999889999999999999998875    56899999984 4677778999999999844331


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .         .....++..++++|+|||.+++...
T Consensus       118 ~---------~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          118 P---------LELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             H---------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             H---------HHHHHHHHHHHHHcCCCcEEEEEec
Confidence            1         1267899999999999999998764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.67  E-value=9.5e-16  Score=126.82  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----C-cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----V-EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~-~~~~~~~D~~  104 (291)
                      ...+...+++.+...+   +.+|||||||+|.++..++..  +..++|+|+|+.|++.|+++.     . .+ ++.+|+.
T Consensus        10 ~~~~~~~~~~~~~~~~---~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~   85 (178)
T 3hm2_A           10 KQHVRALAISALAPKP---HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAP   85 (178)
T ss_dssp             HHHHHHHHHHHHCCCT---TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTT
T ss_pred             HHHHHHHHHHHhcccC---CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchH
Confidence            3456677788887765   679999999999999999988  589999999999999998763     2 35 7788875


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.++...++||+|++..+++|               ..++..++++|+|||++++....  ......+...+.+.|+.-
T Consensus        86 ~~~~~~~~~~D~i~~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~~~~  147 (178)
T 3hm2_A           86 RAFDDVPDNPDVIFIGGGLTA---------------PGVFAAAWKRLPVGGRLVANAVT--VESEQMLWALRKQFGGTI  147 (178)
T ss_dssp             GGGGGCCSCCSEEEECC-TTC---------------TTHHHHHHHTCCTTCEEEEEECS--HHHHHHHHHHHHHHCCEE
T ss_pred             hhhhccCCCCCEEEECCcccH---------------HHHHHHHHHhcCCCCEEEEEeec--cccHHHHHHHHHHcCCee
Confidence            555544489999999988876               16889999999999999988753  345667778888888653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.67  E-value=4.5e-16  Score=133.93  Aligned_cols=114  Identities=24%  Similarity=0.327  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +.+|||||||+|.++..++..    +|+|+|+.|++.++++  .+.++.+|+ ..+++..++||+|++..+++|+.+   
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~---  117 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--GVFVLKGTA-ENLPLKDESFDFALMVTTICFVDD---  117 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--TCEEEECBT-TBCCSCTTCEEEEEEESCGGGSSC---
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--CCEEEEccc-ccCCCCCCCeeEEEEcchHhhccC---
Confidence            459999999999999998876    9999999999999988  678999998 457787889999999999999976   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---------------------HHHHHHHHHHHHcCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---------------------AQRELILGAAMRAGFAG  183 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---------------------~~~~~i~~~~~~aGF~~  183 (291)
                              ...++..+.++|+|||.+++.+.....                     ...+.+..++.++||..
T Consensus       118 --------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~  182 (219)
T 1vlm_A          118 --------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEE  182 (219)
T ss_dssp             --------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred             --------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeE
Confidence                    678999999999999999997643221                     13567788888889875

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.67  E-value=4e-16  Score=139.48  Aligned_cols=103  Identities=19%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC-CCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL-RPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|..+..++..+. .++|+|+|+.|++.|+++..      .+.++++|+.. +++ .+++||+|++..++
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~~~l  143 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQFSF  143 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEESCG
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEECchh
Confidence            67999999999999999988874 99999999999999988753      36889999844 566 57899999999999


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +|+..       +......++.+++++|+|||.+++.+.
T Consensus       144 ~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          144 HYAFS-------TSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             GGGGS-------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhcC-------CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            88421       122367899999999999999998763

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.67  E-value=3.5e-16  Score=130.02  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +.+|||||||+|.++..+++.+ .++|+|+|+.|++.    ...+.++++|+.+  ++.+++||+|+++..++|..+...
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----~~~~~~~~~d~~~--~~~~~~fD~i~~n~~~~~~~~~~~   96 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----HRGGNLVRADLLC--SINQESVDVVVFNPPYVPDTDDPI   96 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----CSSSCEEECSTTT--TBCGGGCSEEEECCCCBTTCCCTT
T ss_pred             CCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----ccCCeEEECChhh--hcccCCCCEEEECCCCccCCcccc
Confidence            5699999999999999999999 99999999999988    4568899999865  555689999999998887654311


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                        .........++..+.+.| |||.+++.....  .+.+.+...+.++||..
T Consensus        97 --~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~  143 (170)
T 3q87_B           97 --IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--NRPKEVLARLEERGYGT  143 (170)
T ss_dssp             --TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--GCHHHHHHHHHHTTCEE
T ss_pred             --ccCCcchHHHHHHHHhhC-CCCEEEEEEecC--CCHHHHHHHHHHCCCcE
Confidence              000011235777888888 999999876432  35667888899999986

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.67  E-value=1e-16  Score=138.91  Aligned_cols=112  Identities=15%  Similarity=0.154  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC-CCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR-PGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~l~~l~~~~  130 (291)
                      +.+|||||||+|.++..+++.+..|+|+|+|+.|++.|+++...+.++++|+.+.+|+. +++||+|+++.      +  
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------~--  120 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------G--  120 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES------C--
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC------C--
Confidence            67999999999999999999999999999999999999999888999999997778888 89999999872      1  


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                               ...++..++++|+|||.++.....   .....+...+.++||..
T Consensus       121 ---------~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~~Gf~~  161 (226)
T 3m33_A          121 ---------PTSVILRLPELAAPDAHFLYVGPR---LNVPEVPERLAAVGWDI  161 (226)
T ss_dssp             ---------CSGGGGGHHHHEEEEEEEEEEESS---SCCTHHHHHHHHTTCEE
T ss_pred             ---------HHHHHHHHHHHcCCCcEEEEeCCc---CCHHHHHHHHHHCCCeE
Confidence                     336788999999999999933222   23346778899999985

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.67  E-value=1.8e-15  Score=126.15  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----Cc--ceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VE--GDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~--~~~~~~D~~~~~  107 (291)
                      ..++.+++.+...+   +.+|||||||+|.++..++..+..++|+|+|+.+++.|+++.     .+  +.++.+|+.+. 
T Consensus        39 ~~~~~l~~~~~~~~---~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-  114 (194)
T 1dus_A           39 KGTKILVENVVVDK---DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-  114 (194)
T ss_dssp             HHHHHHHHHCCCCT---TCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-
T ss_pred             hHHHHHHHHcccCC---CCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-
Confidence            45677888887765   779999999999999999998999999999999999998864     23  78999998653 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                       +..++||+|+++.+++|.          ...+..++..++++|+|||.+++.....  .....+...+.+. |..
T Consensus       115 -~~~~~~D~v~~~~~~~~~----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-~~~  176 (194)
T 1dus_A          115 -VKDRKYNKIITNPPIRAG----------KEVLHRIIEEGKELLKDNGEIWVVIQTK--QGAKSLAKYMKDV-FGN  176 (194)
T ss_dssp             -CTTSCEEEEEECCCSTTC----------HHHHHHHHHHHHHHEEEEEEEEEEEEST--HHHHHHHHHHHHH-HSC
T ss_pred             -cccCCceEEEECCCcccc----------hhHHHHHHHHHHHHcCCCCEEEEEECCC--CChHHHHHHHHHH-hcc
Confidence             346799999999887762          1226789999999999999999987654  3344566666666 654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.67  E-value=2.2e-15  Score=128.85  Aligned_cols=127  Identities=19%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----C-cceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----V-EGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~-~~~~~~~D~~~~~~  108 (291)
                      .+...+++.+.+.+   +.+|||||||+|.++..++..+..|+|+|+|+.|++.|+++.     . .+.++.+|+.+.++
T Consensus        42 ~~~~~~l~~l~~~~---~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~  118 (204)
T 3njr_A           42 PMRALTLAALAPRR---GELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA  118 (204)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred             HHHHHHHHhcCCCC---CCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence            44556777887766   679999999999999999999999999999999999998874     3 57899999865343


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      . ...||+|++..++    +           .. ++..++++|+|||++++...  .......+...+.+.||..
T Consensus       119 ~-~~~~D~v~~~~~~----~-----------~~-~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~i  174 (204)
T 3njr_A          119 D-LPLPEAVFIGGGG----S-----------QA-LYDRLWEWLAPGTRIVANAV--TLESETLLTQLHARHGGQL  174 (204)
T ss_dssp             T-SCCCSEEEECSCC----C-----------HH-HHHHHHHHSCTTCEEEEEEC--SHHHHHHHHHHHHHHCSEE
T ss_pred             c-CCCCCEEEECCcc----c-----------HH-HHHHHHHhcCCCcEEEEEec--CcccHHHHHHHHHhCCCcE
Confidence            2 3579999987644    1           45 89999999999999999875  3467778888899999764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.67  E-value=5.4e-16  Score=137.18  Aligned_cols=149  Identities=17%  Similarity=0.163  Sum_probs=105.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-CCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-LRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..++..+. .|+|+|+++.+++.|+++..      .+.++++|+.+..+ +..++||+|+++..+
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy  129 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY  129 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence            67999999999999999999874 99999999999999988643      37899999855332 557899999998665


Q ss_pred             hhh-----ccc----cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-cEEEeCCCCC
Q 043626          124 QWL-----CNA----DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-GVVVDYPHSS  193 (291)
Q Consensus       124 ~~l-----~~~----~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-~~~~~~p~~~  193 (291)
                      ...     .+.    ....+.+...+..++..+.++|+|||++++.+.+   .....+...+.+.||.. .+...++...
T Consensus       130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~  206 (259)
T 3lpm_A          130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP---ERLLDIIDIMRKYRLEPKRIQFVHPRSD  206 (259)
T ss_dssp             -----------------------HHHHHHHHHHHHHEEEEEEEEEEECT---TTHHHHHHHHHHTTEEEEEEEEEESSTT
T ss_pred             CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH---HHHHHHHHHHHHCCCceEEEEEeecCCC
Confidence            433     111    1112334455788999999999999999997744   35566778888999986 2333345444


Q ss_pred             CCCcEEEEEe
Q 043626          194 KSRKEFLVLT  203 (291)
Q Consensus       194 ~~~~~~l~l~  203 (291)
                      +....+++..
T Consensus       207 ~~~~~~l~~~  216 (259)
T 3lpm_A          207 REANTVLVEG  216 (259)
T ss_dssp             SCCSEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            4444554443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.66  E-value=6.8e-17  Score=145.39  Aligned_cols=120  Identities=13%  Similarity=0.025  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCCchhHHHH----HHc--CCe--EEEEeCCHHHHHHHHhcCC------cceE--EEccCCCCC------CC
Q 043626           52 PRLLLDIGCGSGLSGETL----SEN--GHQ--WIGLDISQSMLNIALEREV------EGDL--LLGDMGQGL------GL  109 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L----~~~--g~~--v~gvDis~~ml~~a~~~~~------~~~~--~~~D~~~~~------~~  109 (291)
                      +.+|||||||+|.++..+    +..  +..  ++|+|+|+.|++.|+++..      .+.+  ..+++. .+      ++
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~  131 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS-EYQSRMLEKK  131 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH-HHHHHHHTTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh-hhhhhhcccc
Confidence            569999999999766433    332  243  4999999999999987642      2333  344432 22      25


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---------------------HH
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---------------------AQ  168 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---------------------~~  168 (291)
                      .+++||+|++..+++|+.|           +..+|.+++++|||||++++.+...+.                     ..
T Consensus       132 ~~~~fD~V~~~~~l~~~~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKD-----------IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYIT  200 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSC-----------HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCC
T ss_pred             CCCceeEEEEeeeeeecCC-----------HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCC
Confidence            6789999999999999988           778999999999999999987533211                     12


Q ss_pred             HHHHHHHHHHcCCCC
Q 043626          169 RELILGAAMRAGFAG  183 (291)
Q Consensus       169 ~~~i~~~~~~aGF~~  183 (291)
                      ...+..++.++||..
T Consensus       201 ~~~~~~~l~~aGf~~  215 (292)
T 2aot_A          201 SDDLTQMLDNLGLKY  215 (292)
T ss_dssp             HHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHCCCce
Confidence            346777888888864

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.66  E-value=8.8e-16  Score=130.53  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||||||+|.++..+++.+. .++|+|+|+.+++.|+++..   .+.++.+|+. .+++.+++||+|+++.+++++.
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~v~~~~~~~~~~  121 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KLDFPSASFDVVLEKGTLDALL  121 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SCCSCSSCEEEEEEESHHHHHT
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cCCCCCCcccEEEECcchhhhc
Confidence            67999999999999999999985 89999999999999998763   5789999984 4678788999999999998875


Q ss_pred             cccccCC----chHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          128 NADKASH----EPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       128 ~~~~~~~----~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .......    +.......++.++.++|+|||.+++..+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            2111000    123346899999999999999999988644

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.66  E-value=3.2e-16  Score=140.16  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=90.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVV  114 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~f  114 (291)
                      .+++.+...+   +.+|||||||+|.++..|++.|..|+|+|+|+.|++.|+++..    .+.++++|+.. +++ .++|
T Consensus       111 ~~~~~~~~~~---~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~f  185 (286)
T 3m70_A          111 DVVDAAKIIS---PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENY  185 (286)
T ss_dssp             HHHHHHHHSC---SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCE
T ss_pred             HHHHHhhccC---CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCc
Confidence            3344443333   6799999999999999999999999999999999999988653    57899999844 455 7899


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |+|+++.+++|+..++         +..++..+.++|+|||.+++..
T Consensus       186 D~i~~~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          186 DFIVSTVVFMFLNRER---------VPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             EEEEECSSGGGSCGGG---------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEEccchhhCCHHH---------HHHHHHHHHHhcCCCcEEEEEE
Confidence            9999999999985422         6789999999999999988754

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.66  E-value=6.9e-16  Score=130.26  Aligned_cols=127  Identities=15%  Similarity=0.123  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||+|||+|.++..+++. +  ..++|+|+|+.|++.|+++.      ..+.++++|+.....+.+++||+|+++..
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  102 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG  102 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence            679999999999999999987 2  69999999999999998874      35789999984433355689999999865


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC---ChHHHHHHHHHHHHcC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE---SVAQRELILGAAMRAG  180 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~---~~~~~~~i~~~~~~aG  180 (291)
                      +  ++..+............++..+.++|+|||++++..+..   .......+..++....
T Consensus       103 ~--~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (197)
T 3eey_A          103 Y--LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD  161 (197)
T ss_dssp             B--CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSC
T ss_pred             c--ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCC
Confidence            5  332222222233345679999999999999999987643   2234445555554433

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=9.5e-17  Score=139.86  Aligned_cols=139  Identities=13%  Similarity=0.127  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~  107 (291)
                      ...+.+.+..++. .+   +.+|||||||+|.++..|++.+ ..|+|+|+|+.|++.|+++.    ..+.++.+|+.+ +
T Consensus        46 ~~~~~~~l~~~~~-~~---~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~  120 (236)
T 1zx0_A           46 ETPYMHALAAAAS-SK---GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED-V  120 (236)
T ss_dssp             GHHHHHHHHHHHT-TT---CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-H
T ss_pred             HHHHHHHHHhhcC-CC---CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHH-h
Confidence            3455555555552 23   6799999999999999998876 48999999999999999876    347889999843 4


Q ss_pred             --CCCCCcccEEEE-CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------------hHHHHHH
Q 043626          108 --GLRPGVVDGAIS-ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------------VAQRELI  172 (291)
Q Consensus       108 --~~~~~~fD~Vis-~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------------~~~~~~i  172 (291)
                        ++.+++||+|++ .+++ ++.+.      .......++.+++++|||||++++..+...            ....+..
T Consensus       121 ~~~~~~~~fD~V~~d~~~~-~~~~~------~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (236)
T 1zx0_A          121 APTLPDGHFDGILYDTYPL-SEETW------HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQ  193 (236)
T ss_dssp             GGGSCTTCEEEEEECCCCC-BGGGT------TTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHT
T ss_pred             hcccCCCceEEEEECCccc-chhhh------hhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHH
Confidence              677899999999 5554 32221      112245789999999999999997532210            0112345


Q ss_pred             HHHHHHcCCCC
Q 043626          173 LGAAMRAGFAG  183 (291)
Q Consensus       173 ~~~~~~aGF~~  183 (291)
                      ...+..+||..
T Consensus       194 ~~~l~~aGF~~  204 (236)
T 1zx0_A          194 VPALLEAGFRR  204 (236)
T ss_dssp             HHHHHHTTCCG
T ss_pred             HHHHHHCCCCC
Confidence            56788999984

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.65  E-value=1.3e-15  Score=133.25  Aligned_cols=113  Identities=22%  Similarity=0.409  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~  110 (291)
                      .+...++..+..++   +.+|||||||+|.++..|++.|..++|+|+|+.|++.|+++..    .+.++++|+.. +++ 
T Consensus        28 ~~~~~~~~~~~~~~---~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~~-  102 (252)
T 1wzn_A           28 DFVEEIFKEDAKRE---VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IAF-  102 (252)
T ss_dssp             HHHHHHHHHTCSSC---CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CCC-
T ss_pred             HHHHHHHHHhcccC---CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-ccc-
Confidence            34445555544444   6799999999999999999999999999999999999987642    47899999844 554 


Q ss_pred             CCcccEEEECC-chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          111 PGVVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       111 ~~~fD~Vis~~-~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +++||+|++.. +++|+.         ...+..++..++++|+|||.+++.+
T Consensus       103 ~~~fD~v~~~~~~~~~~~---------~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          103 KNEFDAVTMFFSTIMYFD---------EEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             CSCEEEEEECSSGGGGSC---------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccEEEEcCCchhcCC---------HHHHHHHHHHHHHHcCCCeEEEEec
Confidence            47899999874 444442         2237789999999999999999876

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.65  E-value=5.6e-16  Score=140.22  Aligned_cols=122  Identities=18%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCCchhHHHHH--Hc-CCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLS--EN-GHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~--~~-g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..++  .. +..|+|+|+|+.|++.|+++...      +.++++|+. .+++. ++||+|+++.+
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~-~~fD~v~~~~~  196 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW-KLDTR-EGYDLLTSNGL  196 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG-GCCCC-SCEEEEECCSS
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh-cCCcc-CCeEEEEECCh
Confidence            6799999999999999985  22 47999999999999999987643      789999984 46776 99999999999


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------------------------------------h
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------------------------------------V  166 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------------------------------------~  166 (291)
                      ++|+++.        .....++..++++|+|||++++..+...                                    .
T Consensus       197 ~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (305)
T 3ocj_A          197 NIYEPDD--------ARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNAL  268 (305)
T ss_dssp             GGGCCCH--------HHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCC
T ss_pred             hhhcCCH--------HHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhcc
Confidence            9998662        1144689999999999999999763210                                    0


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 043626          167 AQRELILGAAMRAGFAG  183 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~  183 (291)
                      ...+.+...+.++||..
T Consensus       269 ~~~~~~~~~l~~aGF~~  285 (305)
T 3ocj_A          269 RTHAQTRAQLEEAGFTD  285 (305)
T ss_dssp             CCHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHCCCEE
Confidence            24678889999999986

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.64  E-value=1.1e-16  Score=140.11  Aligned_cols=154  Identities=12%  Similarity=0.141  Sum_probs=106.0

Q ss_pred             cCCchhhccccccch---------hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCH
Q 043626           14 FYDDTEARKYTSSSR---------IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQ   83 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~---------~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~   83 (291)
                      .|+ ..+..|+....         +......+.+.+.+.+..+    +.+|||||||+|.++..+++.+ ..++|||+|+
T Consensus        19 ~w~-~~~~~yd~~~~~l~~~g~~vm~~we~~~m~~~a~~~~~~----G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~   93 (236)
T 3orh_A           19 AWG-AAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK----GGRVLEVGFGMAIAASKVQEAPIDEHWIIECND   93 (236)
T ss_dssp             HHT-TSCEEECTTSSEEEETTEEEEEGGGHHHHHHHHHHHTTT----CEEEEEECCTTSHHHHHHTTSCEEEEEEEECCH
T ss_pred             hHh-cCcCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhhccC----CCeEEEECCCccHHHHHHHHhCCcEEEEEeCCH
Confidence            344 56667776421         1122334455566665433    6799999999999999999875 7899999999


Q ss_pred             HHHHHHHhcCC----cceEEEccCCCC-CCCCCCcccEEEEC-----CchhhhccccccCCchHHHHHHHHHHHHHhccC
Q 043626           84 SMLNIALEREV----EGDLLLGDMGQG-LGLRPGVVDGAISI-----SAVQWLCNADKASHEPRLRLKAFFGSLYRCLAR  153 (291)
Q Consensus        84 ~ml~~a~~~~~----~~~~~~~D~~~~-~~~~~~~fD~Vis~-----~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkp  153 (291)
                      .|++.|+++..    .+.++.+|.... .+++.++||.|+..     .++.|+.+           ...++.+++++|||
T Consensus        94 ~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~-----------~~~~~~e~~rvLkP  162 (236)
T 3orh_A           94 GVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ-----------FNFIKNHAFRLLKP  162 (236)
T ss_dssp             HHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH-----------HHHHHHTHHHHEEE
T ss_pred             HHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcc-----------hhhhhhhhhheeCC
Confidence            99999998654    356777776332 25678899999753     33444433           67899999999999


Q ss_pred             CcEEEEEEc-----------CC-ChHHHHHHHHHHHHcCCCC
Q 043626          154 GARAVFQIY-----------PE-SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       154 gG~lv~~~~-----------~~-~~~~~~~i~~~~~~aGF~~  183 (291)
                      ||+|+|...           .. .....+.+...+.++||..
T Consensus       163 GG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~  204 (236)
T 3orh_A          163 GGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             EEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCG
T ss_pred             CCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeE
Confidence            999987421           10 0112344566788899985

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.64  E-value=6.3e-16  Score=131.46  Aligned_cols=113  Identities=20%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..+++.+ ..++|+|+|+.|++.|+++..     ++.++.+|+..   +.+++||+|+++.++++
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA---DVDGKFDLIVANILAEI  137 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT---TCCSCEEEEEEESCHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc---cCCCCceEEEECCcHHH
Confidence            6799999999999999999987 499999999999999988642     37899999844   34689999999988876


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +              ..++..+.++|+|||++++.....  .+...+...+.++||..
T Consensus       138 ~--------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~Gf~~  179 (205)
T 3grz_A          138 L--------------LDLIPQLDSHLNEDGQVIFSGIDY--LQLPKIEQALAENSFQI  179 (205)
T ss_dssp             H--------------HHHGGGSGGGEEEEEEEEEEEEEG--GGHHHHHHHHHHTTEEE
T ss_pred             H--------------HHHHHHHHHhcCCCCEEEEEecCc--ccHHHHHHHHHHcCCce
Confidence            3              578999999999999999974332  35667888899999975

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.64  E-value=2.8e-16  Score=137.12  Aligned_cols=102  Identities=21%  Similarity=0.105  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCCCC-----CcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGLRP-----GVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~~~-----~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|.++..|++.+..|+|+|+|+.|++.|+++..  .+.++++|+.+ +++..     ..||+|+++.+++
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~d~v~~~~~~~  135 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLV-PEQAAQIHSEIGDANIYMRTGFH  135 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC-HHHHHHHHHHHCSCEEEEESSST
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccc-cccccccccccCccEEEEcchhh
Confidence            6799999999999999999998899999999999999998875  57899999844 22211     2499999999999


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      |+...+         ...++.+++++|+|||++++..+.
T Consensus       136 ~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          136 HIPVEK---------RELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             TSCGGG---------HHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cCCHHH---------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            986322         678999999999999997776544

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.64  E-value=1.9e-15  Score=125.90  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      .+...+++.+...+   +.+|||+|||+|.++..++..+..++|+|+|+.+++.++++.      ..+.++.+|+...++
T Consensus        20 ~~~~~~~~~~~~~~---~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   96 (192)
T 1l3i_A           20 EVRCLIMCLAEPGK---NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (192)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             HHHHHHHHhcCCCC---CCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc
Confidence            45566777777665   679999999999999999998899999999999999998854      357888888744222


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      . .++||+|++..++++              +..++..+.++|+|||.+++....  ......+...+.+.||..
T Consensus        97 ~-~~~~D~v~~~~~~~~--------------~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~  154 (192)
T 1l3i_A           97 K-IPDIDIAVVGGSGGE--------------LQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFDV  154 (192)
T ss_dssp             T-SCCEEEEEESCCTTC--------------HHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCCC
T ss_pred             c-CCCCCEEEECCchHH--------------HHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCCce
Confidence            1 258999999887754              458899999999999999998753  456778888999999954

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.64  E-value=3e-15  Score=128.38  Aligned_cols=125  Identities=24%  Similarity=0.336  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--CCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--LRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~  122 (291)
                      +..|||||||+|.++..++..  +..++|+|+|+.+++.|+++.     .++.++++|+.. ++  +.+++||+|++++.
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEECC
Confidence            569999999999999999987  479999999999999998864     468899999854 54  66789999999977


Q ss_pred             hhhhccccccCCchH-HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          123 VQWLCNADKASHEPR-LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       123 l~~l~~~~~~~~~p~-~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..|...    .|++. .....++..+.++|+|||.+++.+.  +......+.+.+..+||..
T Consensus       121 ~~~~~~----~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~g~~~  176 (214)
T 1yzh_A          121 DPWPKK----RHEKRRLTYKTFLDTFKRILPENGEIHFKTD--NRGLFEYSLVSFSQYGMKL  176 (214)
T ss_dssp             CCCCSG----GGGGGSTTSHHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHHTCEE
T ss_pred             CCcccc----chhhhccCCHHHHHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHHHHCCCee
Confidence            655421    11111 1135799999999999999999873  3345667788888899864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.63  E-value=9.3e-15  Score=127.73  Aligned_cols=150  Identities=19%  Similarity=0.177  Sum_probs=108.9

Q ss_pred             HHHHHHHH---HhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC---cceEEEccCCC
Q 043626           35 KLSERALE---LLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV---EGDLLLGDMGQ  105 (291)
Q Consensus        35 ~~~~~~le---lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~  105 (291)
                      .++..++.   .|.+++   +.+|||+|||+|.++..|++. |  ..|+|+|+|+.|++.+.++..   ++..+.+|...
T Consensus        61 klaa~i~~gl~~l~ikp---G~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~  137 (233)
T 4df3_A           61 KLAAALLKGLIELPVKE---GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF  137 (233)
T ss_dssp             HHHHHHHTTCSCCCCCT---TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC
T ss_pred             HHHHHHHhchhhcCCCC---CCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC
Confidence            44444443   344555   889999999999999999986 4  799999999999999987654   47788888754


Q ss_pred             C--CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------hHHHHHHHHHH
Q 043626          106 G--LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------VAQRELILGAA  176 (291)
Q Consensus       106 ~--~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------~~~~~~i~~~~  176 (291)
                      .  .++..+++|+|++....++-             ...++.+++++|||||++++.+....       ........+.+
T Consensus       138 p~~~~~~~~~vDvVf~d~~~~~~-------------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L  204 (233)
T 4df3_A          138 PEKYRHLVEGVDGLYADVAQPEQ-------------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTL  204 (233)
T ss_dssp             GGGGTTTCCCEEEEEECCCCTTH-------------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHH
T ss_pred             ccccccccceEEEEEEeccCChh-------------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHH
Confidence            2  35667899999876443321             45789999999999999998753322       23445566778


Q ss_pred             HHcCCCCcEEEeC-CCCCCCCcEEEEEe
Q 043626          177 MRAGFAGGVVVDY-PHSSKSRKEFLVLT  203 (291)
Q Consensus       177 ~~aGF~~~~~~~~-p~~~~~~~~~l~l~  203 (291)
                      ..+||.....++. |+.   ..+++++.
T Consensus       205 ~~~GF~l~e~i~L~pf~---~~H~lv~~  229 (233)
T 4df3_A          205 MDGGLEIKDVVHLDPFD---RDHAMIYA  229 (233)
T ss_dssp             HHTTCCEEEEEECTTTS---TTEEEEEE
T ss_pred             HHCCCEEEEEEccCCCC---CceEEEEE
Confidence            8999987555554 332   34666553

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.63  E-value=8.6e-15  Score=125.94  Aligned_cols=132  Identities=16%  Similarity=0.052  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHH----HHhcCCcceEEEccCCCC---CCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNI----ALEREVEGDLLLGDMGQG---LGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~----a~~~~~~~~~~~~D~~~~---~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||||||+|..+..|++..  ..|+|+|+|+.|++.    |+.+ .++.++.+|+...   .++. ++||+|+++..
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~~  135 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDIA  135 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECCC
T ss_pred             CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEecc
Confidence            6799999999999999999874  799999999986543    3332 4577888888553   3443 89999998731


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC------CChHHHH-HHHHHHHHcCCCCcEEEeC-CCCCC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP------ESVAQRE-LILGAAMRAGFAGGVVVDY-PHSSK  194 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~------~~~~~~~-~i~~~~~~aGF~~~~~~~~-p~~~~  194 (291)
                      . +            .....++.+++++|||||++++.+..      ..++... .-.+.+.++ |.....++. |..  
T Consensus       136 ~-~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~--  199 (210)
T 1nt2_A          136 Q-K------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYH--  199 (210)
T ss_dssp             S-T------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTC--
T ss_pred             C-h------------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCC--
Confidence            1 1            11345689999999999999998522      1112211 112336777 876444443 322  


Q ss_pred             CCcEEEEE
Q 043626          195 SRKEFLVL  202 (291)
Q Consensus       195 ~~~~~l~l  202 (291)
                       +.+|+++
T Consensus       200 -~~h~~~~  206 (210)
T 1nt2_A          200 -RDHIFIH  206 (210)
T ss_dssp             -TTEEEEE
T ss_pred             -CCcEEEE
Confidence             3455554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.63  E-value=1.2e-15  Score=138.45  Aligned_cols=123  Identities=15%  Similarity=0.156  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------------cce
Q 043626           32 IQAKLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------------EGD   97 (291)
Q Consensus        32 iq~~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------------~~~   97 (291)
                      +...+...+++.+... .+  +.+|||||||+|..+..+++. +..|+|+|+|+.|++.|+++..            .+.
T Consensus        16 ~k~~l~~~~~~~l~~~~~~--~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~   93 (313)
T 3bgv_A           16 MKSVLIGEFLEKVRQKKKR--DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAE   93 (313)
T ss_dssp             HHHHHHHHHHHHHHHTC----CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEE
T ss_pred             HHHHHHHHHHHHhhhccCC--CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEE
Confidence            3445556666655432 11  679999999999999999876 4799999999999999987643            468


Q ss_pred             EEEccCCCCC---CCC--CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           98 LLLGDMGQGL---GLR--PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        98 ~~~~D~~~~~---~~~--~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ++++|+....   ++.  +++||+|+|+.++||+..       +...+..+|.+++++|+|||.+++.+..
T Consensus        94 ~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A           94 FITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFE-------SYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             EEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGG-------SHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EEEecccccchhhhcccCCCCEEEEEEecchhhccC-------CHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            9999985532   243  459999999999999822       1122578999999999999999998753

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.63  E-value=2.3e-15  Score=136.66  Aligned_cols=103  Identities=15%  Similarity=0.092  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc-----------ceEEEccCCCCC-------CCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE-----------GDLLLGDMGQGL-------GLRPG  112 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~-----------~~~~~~D~~~~~-------~~~~~  112 (291)
                      +.+|||||||+|..+..++.. +..|+|+|+|+.||+.|+++...           +++.+.|+....       +++.+
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~  128 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG  128 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence            579999999999866656555 47999999999999999987532           357777773211       34568


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +||+|+|..++||+.+..        ....++++++++|||||++++.+.
T Consensus       129 ~FD~V~~~~~lhy~~~~~--------~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          129 KFNIIDWQFAIHYSFHPR--------HYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CEEEEEEESCGGGTCSTT--------THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CeeEEEECchHHHhCCHH--------HHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999999999999874421        146899999999999999999874

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=3.8e-15  Score=132.14  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=103.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCC------CCCCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGL------GLRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~------~~~~~~f  114 (291)
                      +.+|||||||+|.++..++..+  ..++|+|+++.|++.|+++...         +.++++|+.+..      ++..++|
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f  116 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF  116 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence            6799999999999999999885  6999999999999999987654         789999986542      3567899


Q ss_pred             cEEEECCchhhhcc---cc----ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-cEE
Q 043626          115 DGAISISAVQWLCN---AD----KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-GVV  186 (291)
Q Consensus       115 D~Vis~~~l~~l~~---~~----~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-~~~  186 (291)
                      |+|+++..+.+...   .+    ...+.....+..++..+.++|+|||++++.+.+   .+...+...+.+. |.. .+.
T Consensus       117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~~-~~~~~i~  192 (260)
T 2ozv_A          117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSVAEIIAACGSR-FGGLEIT  192 (260)
T ss_dssp             EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGHHHHHHHHTTT-EEEEEEE
T ss_pred             CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHHHHHHHHHHhc-CCceEEE
Confidence            99999965543310   00    000111122678999999999999999998743   3556677777654 765 344


Q ss_pred             EeCCCCCCCCcEEEEEee
Q 043626          187 VDYPHSSKSRKEFLVLTC  204 (291)
Q Consensus       187 ~~~p~~~~~~~~~l~l~~  204 (291)
                      ..++...+....+++.+.
T Consensus       193 ~v~~~~~~~~~~~lv~~~  210 (260)
T 2ozv_A          193 LIHPRPGEDAVRMLVTAI  210 (260)
T ss_dssp             EEESSTTSCCCEEEEEEE
T ss_pred             EEcCCCCCCceEEEEEEE
Confidence            445555545455544443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.62  E-value=1.9e-15  Score=128.88  Aligned_cols=109  Identities=22%  Similarity=0.151  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG  108 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~  108 (291)
                      ..+...+++.+.+.+   +.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++.     .++.++.+|+.. ..
T Consensus        63 ~~~~~~~~~~l~~~~---~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~  138 (210)
T 3lbf_A           63 PYMVARMTELLELTP---QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ-GW  138 (210)
T ss_dssp             HHHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CC
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc-CC
Confidence            456677788887766   789999999999999999999999999999999999998864     347899999854 33


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ...++||+|++..+++|+.+                 .+.++|+|||++++.+.+
T Consensus       139 ~~~~~~D~i~~~~~~~~~~~-----------------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          139 QARAPFDAIIVTAAPPEIPT-----------------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGGCCEEEEEESSBCSSCCT-----------------HHHHTEEEEEEEEEEECS
T ss_pred             ccCCCccEEEEccchhhhhH-----------------HHHHhcccCcEEEEEEcC
Confidence            44689999999999998854                 478999999999998854

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.62  E-value=2.8e-15  Score=128.19  Aligned_cols=117  Identities=19%  Similarity=0.228  Sum_probs=94.3

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEE
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAI  118 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vi  118 (291)
                      .+++.+....+  +.+|||||||+|.++..+   +..++|+|+|+.          .+.++.+|+. .+++.+++||+|+
T Consensus        57 ~~~~~l~~~~~--~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------~~~~~~~d~~-~~~~~~~~fD~v~  120 (215)
T 2zfu_A           57 RIARDLRQRPA--SLVVADFGCGDCRLASSI---RNPVHCFDLASL----------DPRVTVCDMA-QVPLEDESVDVAV  120 (215)
T ss_dssp             HHHHHHHTSCT--TSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------STTEEESCTT-SCSCCTTCEEEEE
T ss_pred             HHHHHHhccCC--CCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------CceEEEeccc-cCCCCCCCEeEEE
Confidence            35555543222  679999999999998877   378999999987          4778999984 4778889999999


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +..++|| .+           ...++.+++++|+|||.+++..........+.+..++.++||..
T Consensus       121 ~~~~l~~-~~-----------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~  173 (215)
T 2zfu_A          121 FCLSLMG-TN-----------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKI  173 (215)
T ss_dssp             EESCCCS-SC-----------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEE
T ss_pred             Eehhccc-cC-----------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEE
Confidence            9999975 44           67899999999999999999865543346678889999999975

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.62  E-value=1e-14  Score=130.55  Aligned_cols=122  Identities=15%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCC---chhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC---CcceEEEccC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGS---GLSGETLSEN--GHQWIGLDISQSMLNIALERE---VEGDLLLGDM  103 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGs---G~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~  103 (291)
                      .+..+..++++.|.....  ...|||||||+   |.++..+...  +..|+++|+|+.|++.|+++.   ..+.++.+|+
T Consensus        60 ~~~~~~~~~~~~l~~~~~--~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~  137 (274)
T 2qe6_A           60 ENRKVLVRGVRFLAGEAG--ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADV  137 (274)
T ss_dssp             HHHHHHHHHHHHHHTTTC--CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCT
T ss_pred             HHhHHHHHHHHHHhhccC--CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeC
Confidence            345566677777653221  46999999999   9988777664  589999999999999999876   3578999998


Q ss_pred             CCCC----------CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          104 GQGL----------GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       104 ~~~~----------~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .+..          .+...+||+|+++.++||+++.+         ...+|.+++++|+|||+|++.....
T Consensus       138 ~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~---------~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          138 RDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDV---------VDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             TCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTT---------HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCchhhhccchhhccCCCCCCEEEEEechhhhCCcHH---------HHHHHHHHHHhCCCCcEEEEEEecC
Confidence            5420          12235899999999999997632         5689999999999999999987653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=7.8e-15  Score=121.36  Aligned_cols=125  Identities=14%  Similarity=0.183  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~  109 (291)
                      .+.+.+++.+...+   +.+|||+|||+|.++..++..+..++|+|+|+.|++.|+++.     ..+.++.+|+.+  ++
T Consensus        22 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~   96 (183)
T 2yxd_A           22 EIRAVSIGKLNLNK---DDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED--VL   96 (183)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH--HG
T ss_pred             HHHHHHHHHcCCCC---CCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc--cc
Confidence            45666777777665   679999999999999999997789999999999999998875     357889999854  45


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.++||+|+++.+    .+           +..++..+.++  |||.+++...  +......+...+.+.||.-
T Consensus        97 ~~~~~D~i~~~~~----~~-----------~~~~l~~~~~~--~gG~l~~~~~--~~~~~~~~~~~l~~~g~~~  151 (183)
T 2yxd_A           97 DKLEFNKAFIGGT----KN-----------IEKIIEILDKK--KINHIVANTI--VLENAAKIINEFESRGYNV  151 (183)
T ss_dssp             GGCCCSEEEECSC----SC-----------HHHHHHHHHHT--TCCEEEEEES--CHHHHHHHHHHHHHTTCEE
T ss_pred             cCCCCcEEEECCc----cc-----------HHHHHHHHhhC--CCCEEEEEec--ccccHHHHHHHHHHcCCeE
Confidence            5679999999877    22           56788888888  9999999874  4466778899999999864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.61  E-value=2.4e-15  Score=132.86  Aligned_cols=137  Identities=20%  Similarity=0.165  Sum_probs=105.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC---CCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL---RPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~---~~~~fD~Vis~~  121 (291)
                      +.+|||||||+|..+..|+..  +.+|+++|+|+.|++.|+++.     .++.++++|+.+ ++.   ..++||+|+|..
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~-~~~~~~~~~~fD~I~s~a  159 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEV-LAREAGHREAYARAVARA  159 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHH-HTTSTTTTTCEEEEEEES
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHH-hhcccccCCCceEEEECC
Confidence            679999999999999999876  479999999999999998764     247899999843 332   247999999864


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLV  201 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~  201 (291)
                      +.    +           +..++..+.++|+|||++++...+...+++..+...+...||....+..+..........++
T Consensus       160 ~~----~-----------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~  224 (249)
T 3g89_A          160 VA----P-----------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLV  224 (249)
T ss_dssp             SC----C-----------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEE
T ss_pred             cC----C-----------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEE
Confidence            42    2           56889999999999999999877666778888889999999986445444222223344444


Q ss_pred             Eee
Q 043626          202 LTC  204 (291)
Q Consensus       202 l~~  204 (291)
                      ++.
T Consensus       225 ~~~  227 (249)
T 3g89_A          225 VLE  227 (249)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.61  E-value=1.7e-15  Score=127.31  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC-CCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG-LRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.     ..++++++|+.+..+ +..++||+|+++.+++
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~  124 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYN  124 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCC
Confidence            6799999999999999888877 58999999999999998865     357899999854322 3468999999998877


Q ss_pred             hhccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEcC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIYP  163 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~~  163 (291)
                      +..          ..+..++..+.+  +|+|||.++++...
T Consensus       125 ~~~----------~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          125 VDS----------ADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             SCH----------HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             cch----------hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            631          126789999999  99999999998754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.61  E-value=3.6e-15  Score=134.39  Aligned_cols=150  Identities=18%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEE-EccCCCCCC---CCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLL-LGDMGQGLG---LRP  111 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~-~~D~~~~~~---~~~  111 (291)
                      .+.+++.+.+...  +..|||||||||.++..|++.| ..|+|||+|+.||+.+.++...+..+ ..++ ..++   ++.
T Consensus        73 l~~~l~~~~~~~~--g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni-~~l~~~~l~~  149 (291)
T 3hp7_A           73 LEKALAVFNLSVE--DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNF-RYAEPVDFTE  149 (291)
T ss_dssp             HHHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCG-GGCCGGGCTT
T ss_pred             HHHHHHhcCCCcc--ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCc-eecchhhCCC
Confidence            3466777776543  6799999999999999999997 69999999999999976654443222 2233 1122   234


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------------hHHHHHH
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------------VAQRELI  172 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------------~~~~~~i  172 (291)
                      .+||+|++..+++++              ..+|.+++++|+|||.+++.+.|..                   ....+.+
T Consensus       150 ~~fD~v~~d~sf~sl--------------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v  215 (291)
T 3hp7_A          150 GLPSFASIDVSFISL--------------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETV  215 (291)
T ss_dssp             CCCSEEEECCSSSCG--------------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEEeeHhhH--------------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHH
Confidence            469999998887764              4689999999999999998643311                   1245678


Q ss_pred             HHHHHHcCCCCcEEEeCCCC-CC-CCcEEEEEe
Q 043626          173 LGAAMRAGFAGGVVVDYPHS-SK-SRKEFLVLT  203 (291)
Q Consensus       173 ~~~~~~aGF~~~~~~~~p~~-~~-~~~~~l~l~  203 (291)
                      ..++..+||....+...|.. .. +..|++++.
T Consensus       216 ~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~~  248 (291)
T 3hp7_A          216 TAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLE  248 (291)
T ss_dssp             HHHHHHTTEEEEEEEECSSCCGGGCCCEEEEEE
T ss_pred             HHHHHHCCCEEEEEEECCCCCCCcCHHHHHHhh
Confidence            88899999986333333332 22 344444443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.61  E-value=3.3e-15  Score=129.77  Aligned_cols=136  Identities=15%  Similarity=0.171  Sum_probs=96.2

Q ss_pred             HHHHH---HHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCC-
Q 043626           36 LSERA---LELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQG-  106 (291)
Q Consensus        36 ~~~~~---lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~-  106 (291)
                      +...+   ++.+.+.+   +.+|||||||+|.++..|++. + ..|+|+|+|+.|++.|+++.   .++.++.+|+... 
T Consensus        59 ~~~~i~~~l~~~~~~~---~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~  135 (230)
T 1fbn_A           59 LAAAIIKGLKVMPIKR---DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ  135 (230)
T ss_dssp             HHHHHHTTCCCCCCCT---TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG
T ss_pred             HHHHHHhcccccCCCC---CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcc
Confidence            33455   44444444   679999999999999999988 4 79999999999999988765   3578889998541 


Q ss_pred             --CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------hH--HHHHHHHHH
Q 043626          107 --LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------VA--QRELILGAA  176 (291)
Q Consensus       107 --~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------~~--~~~~i~~~~  176 (291)
                        +++. ++||+|++     ++.+       |. ....++.++.++|+|||.+++.+.+..      ..  ..+.+. .+
T Consensus       136 ~~~~~~-~~~D~v~~-----~~~~-------~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l  200 (230)
T 1fbn_A          136 EYANIV-EKVDVIYE-----DVAQ-------PN-QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-IL  200 (230)
T ss_dssp             GGTTTS-CCEEEEEE-----CCCS-------TT-HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HH
T ss_pred             cccccC-ccEEEEEE-----ecCC-------hh-HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HH
Confidence              4554 78999993     2222       11 135789999999999999999743211      01  224555 78


Q ss_pred             HHcCCCCcEEEeC
Q 043626          177 MRAGFAGGVVVDY  189 (291)
Q Consensus       177 ~~aGF~~~~~~~~  189 (291)
                      ..+||......+.
T Consensus       201 ~~~Gf~~~~~~~~  213 (230)
T 1fbn_A          201 EAGGFKIVDEVDI  213 (230)
T ss_dssp             HHHTEEEEEEEEC
T ss_pred             HHCCCEEEEEEcc
Confidence            8899976344443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.60  E-value=2.6e-15  Score=127.13  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      + +|||||||+|.++..++..+..++|+|+|+.|++.|+++..    .+.++.+|+. .+++.+++||+|+++.  .|+ 
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~--~~~-  105 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLA-DFDIVADAWEGIVSIF--CHL-  105 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTT-TBSCCTTTCSEEEEEC--CCC-
T ss_pred             C-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChh-hcCCCcCCccEEEEEh--hcC-
Confidence            5 99999999999999999999999999999999999988752    5788999984 4577788999999853  233 


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                              +......++..+.++|+|||.+++.++
T Consensus       106 --------~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A          106 --------PSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             --------CHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             --------CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                    122367899999999999999999864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.60  E-value=3.8e-15  Score=128.76  Aligned_cols=110  Identities=23%  Similarity=0.249  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~  110 (291)
                      ..+...+++.+...+   +.+|||||||+|.++..+++.+..|+|+|+|+.+++.|+++..   .+.++.+|+...++ .
T Consensus        56 ~~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~  131 (231)
T 1vbf_A           56 LNLGIFMLDELDLHK---GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-E  131 (231)
T ss_dssp             HHHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-G
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-c
Confidence            356777888887665   6799999999999999999999999999999999999998765   57899999855333 3


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .++||+|++..+++|+.+                 .+.++|+|||++++.+.+.
T Consensus       132 ~~~fD~v~~~~~~~~~~~-----------------~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLC-----------------KPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GCCEEEEEESSBBSSCCH-----------------HHHHTEEEEEEEEEEECSS
T ss_pred             CCCccEEEECCcHHHHHH-----------------HHHHHcCCCcEEEEEEcCC
Confidence            578999999999988732                 5889999999999998544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.60  E-value=6.7e-15  Score=126.65  Aligned_cols=125  Identities=19%  Similarity=0.280  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--CCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--LRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~  122 (291)
                      +..|||||||+|.++..|+..  +..++|+|+|+.|++.|+++.     .++.++.+|+.. ++  +++++||.|++++.
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEECC
Confidence            569999999999999999987  589999999999999998763     357899999854 43  66789999998766


Q ss_pred             hhhhccccccCCchHH-HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          123 VQWLCNADKASHEPRL-RLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~-~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..|...    .++... ....++..++++|+|||.+++.+.  +......+...+...||..
T Consensus       118 ~p~~~~----~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          118 DPWPKK----RHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD--NRGLFEYSLKSFSEYGLLL  173 (213)
T ss_dssp             CCCCSG----GGGGGSTTSHHHHHHHHHHHTTSCEEEEEES--CHHHHHHHHHHHHHHTCEE
T ss_pred             CCCcCc----cccccccCcHHHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHHCCCcc
Confidence            555421    111111 125789999999999999999873  3445666777788888853

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.59  E-value=8e-15  Score=130.81  Aligned_cols=142  Identities=20%  Similarity=0.189  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ  105 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~  105 (291)
                      ...+.+.+++.+. .+   +.+|||||||+|.++..++..  +..++|+|+|+.+++.|+++.     ..+.++++|+..
T Consensus        95 te~l~~~~l~~~~-~~---~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~  170 (276)
T 2b3t_A           95 TECLVEQALARLP-EQ---PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS  170 (276)
T ss_dssp             HHHHHHHHHHHSC-SS---CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             HHHHHHHHHHhcc-cC---CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh
Confidence            3456677777775 33   679999999999999999966  579999999999999998874     247899999855


Q ss_pred             CCCCCCCcccEEEECCchhhhcc----ccccCCchH----------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626          106 GLGLRPGVVDGAISISAVQWLCN----ADKASHEPR----------LRLKAFFGSLYRCLARGARAVFQIYPESVAQREL  171 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~----~~~~~~~p~----------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  171 (291)
                      .  +..++||+|+++..+.+...    .....++|.          ..+..++..+.++|+|||.+++.....   +.+.
T Consensus       171 ~--~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~  245 (276)
T 2b3t_A          171 A--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---QGEA  245 (276)
T ss_dssp             G--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---CHHH
T ss_pred             h--cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch---HHHH
Confidence            3  33678999999855432211    011112332          335789999999999999999987544   4456


Q ss_pred             HHHHHHHcCCCC
Q 043626          172 ILGAAMRAGFAG  183 (291)
Q Consensus       172 i~~~~~~aGF~~  183 (291)
                      +...+.++||..
T Consensus       246 ~~~~l~~~Gf~~  257 (276)
T 2b3t_A          246 VRQAFILAGYHD  257 (276)
T ss_dssp             HHHHHHHTTCTT
T ss_pred             HHHHHHHCCCcE
Confidence            777788899986

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.59  E-value=2.8e-14  Score=124.69  Aligned_cols=144  Identities=17%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHH----HHHhcCCcceEEEc
Q 043626           32 IQAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLN----IALEREVEGDLLLG  101 (291)
Q Consensus        32 iq~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~----~a~~~~~~~~~~~~  101 (291)
                      .+..+...++..|.   +.+   +.+|||+|||+|.++..+++.   ...|+|+|+|+.|++    .++++ .++.++++
T Consensus        57 ~~skla~~ll~~l~~~~l~~---g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~  132 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNPIRK---GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLA  132 (232)
T ss_dssp             TTCHHHHHHHTTCSCCSCCT---TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEEC
T ss_pred             HHHHHHHHHHhhhhhcCCCC---CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEc
Confidence            35567777777765   444   789999999999999999976   369999999998854    34433 56889999


Q ss_pred             cCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-------HHHHHH
Q 043626          102 DMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-------AQRELI  172 (291)
Q Consensus       102 D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-------~~~~~i  172 (291)
                      |+.....  ...++||+|++..+....             ...++..+.++|||||++++.+.+...       +.....
T Consensus       133 Da~~~~~~~~~~~~~D~I~~d~a~~~~-------------~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~  199 (232)
T 3id6_C          133 DARFPQSYKSVVENVDVLYVDIAQPDQ-------------TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTE  199 (232)
T ss_dssp             CTTCGGGTTTTCCCEEEEEECCCCTTH-------------HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHH
T ss_pred             ccccchhhhccccceEEEEecCCChhH-------------HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHH
Confidence            9854321  224689999998654221             234455666799999999998644321       112345


Q ss_pred             HHHHHHcCCCCcEEEeC-CCC
Q 043626          173 LGAAMRAGFAGGVVVDY-PHS  192 (291)
Q Consensus       173 ~~~~~~aGF~~~~~~~~-p~~  192 (291)
                      ...+..+||+....++. |+.
T Consensus       200 ~~~L~~~gf~~~~~~~l~p~~  220 (232)
T 3id6_C          200 VEKLENSNFETIQIINLDPYD  220 (232)
T ss_dssp             HHHHHHTTEEEEEEEECTTTC
T ss_pred             HHHHHHCCCEEEEEeccCCCc
Confidence            56677889987444444 443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.59  E-value=3.5e-15  Score=129.14  Aligned_cols=120  Identities=14%  Similarity=0.140  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--CCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--LRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~  122 (291)
                      ...|||||||+|.++..++..+  ..|+|||+|+.|++.|+++.     .++.++++|+.+.++  +++++||.|++++.
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~  114 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP  114 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence            5699999999999999999874  68999999999999998763     357899999755333  67899999999877


Q ss_pred             hhhhcccc--ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHH
Q 043626          123 VQWLCNAD--KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMR  178 (291)
Q Consensus       123 l~~l~~~~--~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~  178 (291)
                      ..|.....  ....     ...++..++++|+|||.+++.+...  ...+.+...+..
T Consensus       115 ~p~~~~~~~~rr~~-----~~~~l~~~~r~LkpGG~l~i~td~~--~~~~~~~~~~~~  165 (218)
T 3dxy_A          115 DPWHKARHNKRRIV-----QVPFAELVKSKLQLGGVFHMATDWE--PYAEHMLEVMSS  165 (218)
T ss_dssp             CCCCSGGGGGGSSC-----SHHHHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHHT
T ss_pred             CCccchhhhhhhhh-----hHHHHHHHHHHcCCCcEEEEEeCCH--HHHHHHHHHHHh
Confidence            66643211  0000     1258999999999999999988432  334444544443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.59  E-value=9e-15  Score=146.35  Aligned_cols=115  Identities=21%  Similarity=0.219  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhc-----------CCcceE
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALER-----------EVEGDL   98 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~-----------~~~~~~   98 (291)
                      .....+.+++.+...+   +.+|||||||+|.++..|++.+   ..|+|+|+|+.|++.|+++           ...+.+
T Consensus       706 ~eqRle~LLelL~~~~---g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVef  782 (950)
T 3htx_A          706 SKQRVEYALKHIRESS---ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATL  782 (950)
T ss_dssp             HHHHHHHHHHHHHHSC---CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEE
T ss_pred             HHHHHHHHHHHhcccC---CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEE
Confidence            3345566666665444   6799999999999999999987   7999999999999999872           245899


Q ss_pred             EEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           99 LLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        99 ~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +++|+ ..+++..++||+|++..+++|+.+         .....++..++++|+|| .+++.+
T Consensus       783 iqGDa-~dLp~~d~sFDlVV~~eVLeHL~d---------p~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          783 YDGSI-LEFDSRLHDVDIGTCLEVIEHMEE---------DQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             EESCT-TSCCTTSCSCCEEEEESCGGGSCH---------HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             EECch-HhCCcccCCeeEEEEeCchhhCCh---------HHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99998 457888899999999999999965         22557999999999999 777764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.58  E-value=8.9e-15  Score=131.22  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeC-CHHHHHHHHhcC---------------Ccce
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDI-SQSMLNIALERE---------------VEGD   97 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDi-s~~ml~~a~~~~---------------~~~~   97 (291)
                      .+.+.+++......   +.+|||||||+|.++..++..|. .|+|+|+ |+.|++.|+++.               ..+.
T Consensus        66 ~l~~~l~~~~~~~~---~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~  142 (281)
T 3bzb_A           66 ALADTLCWQPELIA---GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK  142 (281)
T ss_dssp             HHHHHHHHCGGGTT---TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred             HHHHHHHhcchhcC---CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence            34445554443333   67999999999999999999885 9999999 899999998876               1355


Q ss_pred             EEEccCCCCC-CC----CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhcc---C--CcEEEEEEcCCCh-
Q 043626           98 LLLGDMGQGL-GL----RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLA---R--GARAVFQIYPESV-  166 (291)
Q Consensus        98 ~~~~D~~~~~-~~----~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lk---p--gG~lv~~~~~~~~-  166 (291)
                      +...|.+... .+    ..++||+|++..+++|..+           ...++..+.++|+   |  ||++++.+.+... 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~-----------~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~  211 (281)
T 3bzb_A          143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA-----------HDALLRSVKMLLALPANDPTAVALVTFTHHRPH  211 (281)
T ss_dssp             EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG-----------HHHHHHHHHHHBCCTTTCTTCEEEEEECC----
T ss_pred             EEEecCCCccHHHHhhccCCCCCEEEEeCcccChHH-----------HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc
Confidence            6656654322 11    3578999999889888755           7789999999999   9  9998887766442 


Q ss_pred             --HHHHHHHHHHHHcC-CCC
Q 043626          167 --AQRELILGAAMRAG-FAG  183 (291)
Q Consensus       167 --~~~~~i~~~~~~aG-F~~  183 (291)
                        .....+...+.+.| |..
T Consensus       212 ~~~~~~~~~~~l~~~G~f~v  231 (281)
T 3bzb_A          212 LAERDLAFFRLVNADGALIA  231 (281)
T ss_dssp             ----CTHHHHHHHHSTTEEE
T ss_pred             cchhHHHHHHHHHhcCCEEE
Confidence              23456677888999 875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.58  E-value=1.8e-14  Score=131.45  Aligned_cols=140  Identities=15%  Similarity=0.161  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhCC--CCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCC
Q 043626           35 KLSERALELLAL--PDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE------VEGDLLLGDMG  104 (291)
Q Consensus        35 ~~~~~~lelL~~--~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~  104 (291)
                      .....+++.+..  .+   +.+|||||||+|..+..+++.  +.+++++|+| .+++.|+++.      ..+.++.+|+.
T Consensus       150 ~~~~~~~~~~~~~~~~---~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~  225 (335)
T 2r3s_A          150 NPAQLIAQLVNENKIE---PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAF  225 (335)
T ss_dssp             HHHHHHHHHHTC--CC---CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred             hhHHHHHHhcccccCC---CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccc
Confidence            344566777765  44   679999999999999999987  5799999999 9999998863      23889999985


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------------
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------------  165 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------------  165 (291)
                      + .+++. .||+|++..++||+.+         .....++++++++|+|||++++......                   
T Consensus       226 ~-~~~~~-~~D~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~  294 (335)
T 2r3s_A          226 E-VDYGN-DYDLVLLPNFLHHFDV---------ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLAT  294 (335)
T ss_dssp             T-SCCCS-CEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHH
T ss_pred             c-CCCCC-CCcEEEEcchhccCCH---------HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHee
Confidence            4 35443 4999999999999844         2267899999999999998887543211                   


Q ss_pred             -----hHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          166 -----VAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       166 -----~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                           ....+.+..++.++||....+...
T Consensus       295 ~~~~~~~t~~~~~~ll~~aGf~~~~~~~~  323 (335)
T 2r3s_A          295 TPNGDAYTFAEYESMFSNAGFSHSQLHSL  323 (335)
T ss_dssp             SSSCCCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCCCCcCCHHHHHHHHHHCCCCeeeEEEC
Confidence                 012567888899999987444333

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=2.8e-16  Score=133.48  Aligned_cols=143  Identities=20%  Similarity=0.147  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL  107 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~  107 (291)
                      ..+.+.+++.+....+  +.+|||+|||+|.++..+++.  +..++|+|+|+.|++.|+++..    .+.++++|+.+  
T Consensus        15 ~~~~~~~~~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--   90 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPS--GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE--   90 (215)
T ss_dssp             HHHHHHHHHHHTTCCT--TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH--
T ss_pred             HHHHHHHHHHhhhcCC--CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh--
Confidence            4567778888765222  679999999999999999998  4699999999999999998765    35677777744  


Q ss_pred             CCCC-----CcccEEEECCchhhhcc-----ccccCCchHHHH----------HHHHHHHHHhccCCcE-EEEEEcCCCh
Q 043626          108 GLRP-----GVVDGAISISAVQWLCN-----ADKASHEPRLRL----------KAFFGSLYRCLARGAR-AVFQIYPESV  166 (291)
Q Consensus       108 ~~~~-----~~fD~Vis~~~l~~l~~-----~~~~~~~p~~~l----------~~~l~~l~~~LkpgG~-lv~~~~~~~~  166 (291)
                      ++..     ++||+|+++..+++..+     .....++|...+          ..++..++++|+|||+ +++.+..   
T Consensus        91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---  167 (215)
T 4dzr_A           91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---  167 (215)
T ss_dssp             HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---
T ss_pred             hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---
Confidence            3444     89999999755533221     111112332222          7899999999999999 6665533   


Q ss_pred             HHHHHHHHHHH--HcCCCC
Q 043626          167 AQRELILGAAM--RAGFAG  183 (291)
Q Consensus       167 ~~~~~i~~~~~--~aGF~~  183 (291)
                      .+...+...+.  +.||..
T Consensus       168 ~~~~~~~~~l~~~~~gf~~  186 (215)
T 4dzr_A          168 NQADEVARLFAPWRERGFR  186 (215)
T ss_dssp             SCHHHHHHHTGGGGGGTEE
T ss_pred             ccHHHHHHHHHHhhcCCce
Confidence            34456677777  889965

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.58  E-value=1.6e-14  Score=131.15  Aligned_cols=123  Identities=18%  Similarity=0.091  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC---------CcceEEEccCCCCCCC-CCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE---------VEGDLLLGDMGQGLGL-RPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~---------~~~~~~~~D~~~~~~~-~~~~fD~Vis  119 (291)
                      +.+|||||||+|.++..+++.  ...+++||+|+.+++.|+++.         ..+.++.+|+...+.. ..++||+|++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~  175 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence            679999999999999999987  379999999999999999876         3478899987442211 4689999999


Q ss_pred             CCchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ....++.+         ...+  ..+++.++++|+|||+++++...  ........+.+.+.++||..
T Consensus       176 d~~~~~~~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~  234 (304)
T 3bwc_A          176 DTTDPAGP---------ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFAS  234 (304)
T ss_dssp             ECC------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCCcccc---------chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCc
Confidence            76654432         1112  58999999999999999998643  23456778889999999986

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.58  E-value=5.5e-15  Score=126.77  Aligned_cols=129  Identities=16%  Similarity=0.140  Sum_probs=93.8

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHH----Hhc-----CCcceEEEccCCCCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIA----LER-----EVEGDLLLGDMGQGL  107 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a----~~~-----~~~~~~~~~D~~~~~  107 (291)
                      .+++.+...+   +.+|||||||+|.++..|++.  +..|+|+|+|+.|++.+    +++     ..++.++++|+. .+
T Consensus        18 ~~~~~l~~~~---~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~-~l   93 (218)
T 3mq2_A           18 AEFEQLRSQY---DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAE-RL   93 (218)
T ss_dssp             HHHHHHHTTS---SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCST-TC
T ss_pred             HHHHHhhccC---CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchh-hC
Confidence            3445555554   679999999999999999998  58999999999998853    221     225789999984 47


Q ss_pred             CCCCCcccEEEECCc---h--hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC---------------ChH
Q 043626          108 GLRPGVVDGAISISA---V--QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE---------------SVA  167 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~---l--~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~---------------~~~  167 (291)
                      ++..++ |.|+++..   +  +|+.+           ...++.+++++|+|||++++.+...               ...
T Consensus        94 ~~~~~~-d~v~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (218)
T 3mq2_A           94 PPLSGV-GELHVLMPWGSLLRGVLGS-----------SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPD  161 (218)
T ss_dssp             CSCCCE-EEEEEESCCHHHHHHHHTS-----------SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHH
T ss_pred             CCCCCC-CEEEEEccchhhhhhhhcc-----------HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchH
Confidence            877766 77774432   2  24444           2588999999999999999975211               111


Q ss_pred             -HHHHHHHHHHHcCCCC
Q 043626          168 -QRELILGAAMRAGFAG  183 (291)
Q Consensus       168 -~~~~i~~~~~~aGF~~  183 (291)
                       ..+.+...+..+||..
T Consensus       162 ~~~~~l~~~l~~aGf~i  178 (218)
T 3mq2_A          162 SADEWLAPRYAEAGWKL  178 (218)
T ss_dssp             HHHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHHcCCCc
Confidence             2334778899999975

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.57  E-value=5.4e-15  Score=130.73  Aligned_cols=114  Identities=24%  Similarity=0.269  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||+|||+|.++..+++.|..++|+|+|+.+++.|+++..    .+.++.+|+...  ++.++||+|+++...++  
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--~~~~~fD~Vv~n~~~~~--  196 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDLLVANLYAEL--  196 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEEEEEECCHHH--
T ss_pred             CCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc--CcCCCCCEEEECCcHHH--
Confidence            6799999999999999999998899999999999999988642    267888887443  34678999999866654  


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                                  +..++..+.++|+|||++++.....  .+...+...+.++||..
T Consensus       197 ------------~~~~l~~~~~~LkpgG~lils~~~~--~~~~~v~~~l~~~Gf~~  238 (254)
T 2nxc_A          197 ------------HAALAPRYREALVPGGRALLTGILK--DRAPLVREAMAGAGFRP  238 (254)
T ss_dssp             ------------HHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHHHTTCEE
T ss_pred             ------------HHHHHHHHHHHcCCCCEEEEEeecc--CCHHHHHHHHHHCCCEE
Confidence                        4578999999999999999964332  35678888999999975

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=125.99  Aligned_cols=122  Identities=15%  Similarity=0.099  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhc-----------CCcceEEEccCCCCCC--CCCCcccE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALER-----------EVEGDLLLGDMGQGLG--LRPGVVDG  116 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~-----------~~~~~~~~~D~~~~~~--~~~~~fD~  116 (291)
                      ...|||||||+|.++..|+..  +..++|||+|+.|++.|+++           ..++.++++|+...++  +..++||.
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~  126 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK  126 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred             CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence            568999999999999999987  37899999999999988753           2357899999865465  77899999


Q ss_pred             EEECCchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          117 AISISAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                      |++++...|....    |. ..+  ...++..++++|+|||.+++.+.  .......+...+...|
T Consensus       127 v~~~~~dp~~k~~----h~-krr~~~~~~l~~~~~~LkpGG~l~~~td--~~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          127 MFFLFPDPHFKRT----KH-KWRIISPTLLAEYAYVLRVGGLVYTITD--VLELHDWMCTHFEEHP  185 (235)
T ss_dssp             EEEESCC----------------CCCHHHHHHHHHHEEEEEEEEEEES--CHHHHHHHHHHHHTST
T ss_pred             EEEeCCCchhhhh----hh-hhhhhhHHHHHHHHHHCCCCCEEEEEeC--CHHHHHHHHHHHHHCC
Confidence            9987665554210    00 010  14799999999999999999873  3344555566665554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.56  E-value=1.6e-14  Score=118.30  Aligned_cols=143  Identities=19%  Similarity=0.132  Sum_probs=97.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-------
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-------  108 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-------  108 (291)
                      .+++.+....+  +.+|||+|||+|.++..+++.   +..++|+|+|+ |+..     ..+.++.+|+.+ .+       
T Consensus        12 ~~~~~~~~~~~--~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~-~~~~~~~~~   82 (180)
T 1ej0_A           12 EIQQSDKLFKP--GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----VGVDFLQGDFRD-ELVMKALLE   82 (180)
T ss_dssp             HHHHHHCCCCT--TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----TTEEEEESCTTS-HHHHHHHHH
T ss_pred             HHHHHhCCCCC--CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----CcEEEEEccccc-chhhhhhhc
Confidence            45555554433  679999999999999999987   37999999999 7643     457889999844 34       


Q ss_pred             -CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEE
Q 043626          109 -LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       109 -~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~  187 (291)
                       +.+++||+|+++.+++|..+..............++..+.++|+|||.+++..+...  ....+...+... |.. +.+
T Consensus        83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~-~~~-~~~  158 (180)
T 1ej0_A           83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRSL-FTK-VKV  158 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHHH-EEE-EEE
T ss_pred             cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--cHHHHHHHHHHh-hhh-EEe
Confidence             567899999999888876541100000000126889999999999999999776543  223444555543 654 444


Q ss_pred             eCCCCCC
Q 043626          188 DYPHSSK  194 (291)
Q Consensus       188 ~~p~~~~  194 (291)
                      ..|...+
T Consensus       159 ~~~~~~~  165 (180)
T 1ej0_A          159 RKPDSSR  165 (180)
T ss_dssp             ECCTTSC
T ss_pred             ecCCccc
Confidence            4555443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.56  E-value=3.2e-14  Score=130.10  Aligned_cols=123  Identities=17%  Similarity=0.073  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      ..+|||||||+|..+..+++..  ..++++|+ +.+++.|+++.      ..+.++.+|+.+  +++. +||+|++..++
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~p~-~~D~v~~~~vl  245 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD--PLPA-GAGGYVLSAVL  245 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCCC-SCSEEEEESCG
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC--CCCC-CCcEEEEehhh
Confidence            5799999999999999998863  68999999 99999998753      348899999864  3333 89999999999


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-------------------HHHHHHHHHHHHcCCCCc
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-------------------AQRELILGAAMRAGFAGG  184 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-------------------~~~~~i~~~~~~aGF~~~  184 (291)
                      ||+++         .....++++++++|+|||++++.......                   ...+.+..++.++||...
T Consensus       246 h~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  316 (332)
T 3i53_A          246 HDWDD---------LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR  316 (332)
T ss_dssp             GGSCH---------HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred             ccCCH---------HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence            99865         22578999999999999999986432111                   124568888999999863


Q ss_pred             EEE
Q 043626          185 VVV  187 (291)
Q Consensus       185 ~~~  187 (291)
                      .+.
T Consensus       317 ~~~  319 (332)
T 3i53_A          317 AAH  319 (332)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.55  E-value=2e-14  Score=122.01  Aligned_cols=127  Identities=15%  Similarity=0.091  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+.......+.+|||||||+|..+..++..  +..++|+|+|+.+++.|+++.     .++.++.+|+.+. 
T Consensus        49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-  127 (207)
T 1jsx_A           49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-  127 (207)
T ss_dssp             HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-
T ss_pred             HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC-
Confidence            34455555553221001569999999999999999986  589999999999999998753     2478899998553 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      + ..++||+|+++..    .+           +..++..+.++|+|||.+++...+.....+..+   +.  ||..
T Consensus       128 ~-~~~~~D~i~~~~~----~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~---~~--g~~~  182 (207)
T 1jsx_A          128 P-SEPPFDGVISRAF----AS-----------LNDMVSWCHHLPGEQGRFYALKGQMPEDEIALL---PE--EYQV  182 (207)
T ss_dssp             C-CCSCEEEEECSCS----SS-----------HHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTS---CT--TEEE
T ss_pred             C-ccCCcCEEEEecc----CC-----------HHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHH---hc--CCce
Confidence            3 3578999998642    12           568999999999999999999876554444332   22  7764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.55  E-value=1.4e-14  Score=129.22  Aligned_cols=125  Identities=14%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQG  106 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~  106 (291)
                      ....+++.+.+.+   +.+|||+|||+|.++..+++.   +..++|+|+|+.+++.|+++.      ..+.++.+|+.+ 
T Consensus        98 ~~~~~~~~~~~~~---~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-  173 (275)
T 1yb2_A           98 DASYIIMRCGLRP---GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-  173 (275)
T ss_dssp             --------CCCCT---TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-
T ss_pred             hHHHHHHHcCCCC---cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-
Confidence            3345666666665   679999999999999999987   689999999999999998763      357889999865 


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                       ++..++||+|++.     +++           ...++..+.++|+|||++++....  ..+...+...+..+||..
T Consensus       174 -~~~~~~fD~Vi~~-----~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~~~~l~~~Gf~~  231 (275)
T 1yb2_A          174 -FISDQMYDAVIAD-----IPD-----------PWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHH  231 (275)
T ss_dssp             -CCCSCCEEEEEEC-----CSC-----------GGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEE
T ss_pred             -cCcCCCccEEEEc-----CcC-----------HHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCeE
Confidence             4556899999983     333           347899999999999999998743  346677888888899875

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.54  E-value=4.8e-14  Score=131.95  Aligned_cols=124  Identities=17%  Similarity=0.064  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhCC-CCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626           33 QAKLSERALELLAL-PDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~-~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~  107 (291)
                      ...+.+.+.+.+.. ...  +.+|||+|||+|.++..+++.+..|+|+|+|+.|++.|+++..    .+.++.+|+.. .
T Consensus       216 t~~ll~~l~~~l~~~~~~--~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~-~  292 (381)
T 3dmg_A          216 SLLLLEALQERLGPEGVR--GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDE-A  292 (381)
T ss_dssp             HHHHHHHHHHHHCTTTTT--TCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT-T
T ss_pred             HHHHHHHHHHhhcccCCC--CCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhh-c
Confidence            34455555555531 111  6799999999999999999999999999999999999988653    47899999854 4


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      ++..++||+|+++.+++|...      ........++..+.++|+|||.+++...+..
T Consensus       293 ~~~~~~fD~Ii~npp~~~~~~------~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          293 LTEEARFDIIVTNPPFHVGGA------VILDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             SCTTCCEEEEEECCCCCTTCS------SCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             cccCCCeEEEEECCchhhccc------ccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            444689999999999887321      1112367899999999999999999886543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.54  E-value=6.5e-15  Score=122.15  Aligned_cols=115  Identities=14%  Similarity=0.067  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCC
Q 043626           35 KLSERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~  106 (291)
                      .+.+.+++.+. ...   +.+|||+|||+|.++..++..+ ..++|+|+|+.|++.|+++.      ..+.++.+|+.+.
T Consensus        17 ~~~~~~~~~l~~~~~---~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (177)
T 2esr_A           17 KVRGAIFNMIGPYFN---GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA   93 (177)
T ss_dssp             -CHHHHHHHHCSCCC---SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhhcC---CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh
Confidence            34556667775 333   6799999999999999999886 69999999999999998865      2468888887543


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH--HhccCCcEEEEEEcCC
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY--RCLARGARAVFQIYPE  164 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~--~~LkpgG~lv~~~~~~  164 (291)
                      ++...++||+|+++.++++. .           ...++..+.  ++|+|||.+++.+...
T Consensus        94 ~~~~~~~fD~i~~~~~~~~~-~-----------~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A           94 IDCLTGRFDLVFLDPPYAKE-T-----------IVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             HHHBCSCEEEEEECCSSHHH-H-----------HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHhhcCCCCEEEECCCCCcc-h-----------HHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            44445679999998765321 1           345666666  9999999999987554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.54  E-value=2.7e-14  Score=123.98  Aligned_cols=119  Identities=13%  Similarity=0.034  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCC--CCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQG--LGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~--~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..|++. +  ..|+|+|+|+.|++.+.++.   .++.++.+|+.+.  +++..++||+|++..+.
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~  157 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ  157 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCCC
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCCC
Confidence            679999999999999999987 2  79999999987655443322   5688999998653  34557899999996541


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------hH-HHHHHHHHHHHcCCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------VA-QRELILGAAMRAGFAG  183 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------~~-~~~~i~~~~~~aGF~~  183 (291)
                      .+             ....++.++.++|+|||.+++.+.+..      .. ....-.+.+.++||..
T Consensus       158 ~~-------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  211 (233)
T 2ipx_A          158 PD-------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKP  211 (233)
T ss_dssp             TT-------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEE
T ss_pred             cc-------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCce
Confidence            11             134678889999999999999765421      00 0111147778899976

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.54  E-value=2.5e-14  Score=131.77  Aligned_cols=109  Identities=22%  Similarity=0.283  Sum_probs=85.0

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~  109 (291)
                      .+.+.+.+.+.+   +.+|||||||+|.++..+++.| ..|+|+|+|+ |++.|+++.      ..+.++.+|+. .+++
T Consensus        53 ~~~i~~~~~~~~---~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~  127 (340)
T 2fyt_A           53 RDFIYQNPHIFK---DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIE-EVHL  127 (340)
T ss_dssp             HHHHHHCGGGTT---TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTT-TSCC
T ss_pred             HHHHHhhhhhcC---CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHH-HhcC
Confidence            344555555554   6799999999999999999997 4999999997 999998764      35789999984 4677


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                      +.++||+|++..+...+.+.        ..+..++..+.++|+|||.++
T Consensus       128 ~~~~~D~Ivs~~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 PVEKVDVIISEWMGYFLLFE--------SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCSCEEEEEECCCBTTBTTT--------CHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCcEEEEEEcCchhhccCH--------HHHHHHHHHHHhhcCCCcEEE
Confidence            77899999998643333210        116689999999999999998

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.54  E-value=3.8e-14  Score=124.23  Aligned_cols=126  Identities=18%  Similarity=0.079  Sum_probs=101.6

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQG  106 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~  106 (291)
                      ....+++.+.+.+   +.+|||+|||+|.++..++..   +..++++|+|+.+++.|+++.      ..+.++.+|+.+ 
T Consensus        84 ~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-  159 (258)
T 2pwy_A           84 DASAMVTLLDLAP---GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE-  159 (258)
T ss_dssp             HHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG-
T ss_pred             HHHHHHHHcCCCC---CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh-
Confidence            3456777777765   779999999999999999987   589999999999999998763      457889999854 


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .+++.++||+|++.     +++           ...++..+.++|+|||++++...  ...+...+...+.+.||..
T Consensus       160 ~~~~~~~~D~v~~~-----~~~-----------~~~~l~~~~~~L~~gG~l~~~~~--~~~~~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          160 AELEEAAYDGVALD-----LME-----------PWKVLEKAALALKPDRFLVAYLP--NITQVLELVRAAEAHPFRL  218 (258)
T ss_dssp             CCCCTTCEEEEEEE-----SSC-----------GGGGHHHHHHHEEEEEEEEEEES--CHHHHHHHHHHHTTTTEEE
T ss_pred             cCCCCCCcCEEEEC-----CcC-----------HHHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCce
Confidence            45667899999974     222           23688999999999999998773  2357778888888899975

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.54  E-value=6.2e-15  Score=125.67  Aligned_cols=102  Identities=13%  Similarity=-0.001  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-------CcceEEEccCCCCCCC-CCCc-ccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-------VEGDLLLGDMGQGLGL-RPGV-VDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-------~~~~~~~~D~~~~~~~-~~~~-fD~Vis~~  121 (291)
                      +.+|||+|||+|.++..++..+ ..|+|+|+|+.|++.|+++.       ..+.++.+|+.+.++. ..++ ||+|+++.
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  133 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  133 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence            5699999999999999887777 69999999999999998864       3578899997543332 3578 99999987


Q ss_pred             chhhhccccccCCchHHHHHHHHHHH--HHhccCCcEEEEEEcCCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSL--YRCLARGARAVFQIYPES  165 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l--~~~LkpgG~lv~~~~~~~  165 (291)
                      +++ ..+           ...++..+  .++|+|||.+++...+..
T Consensus       134 ~~~-~~~-----------~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          134 PFH-FNL-----------AEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CSS-SCH-----------HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCC-Ccc-----------HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            743 211           45677777  567999999999886543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=5.2e-14  Score=124.48  Aligned_cols=93  Identities=23%  Similarity=0.308  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +.+|||||||+|.++..+++.  +..++|+|+|+.|++.|+++...+.++.+|+ ..+++.+++||+|+++.+.      
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~------  158 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYAP------  158 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESCC------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCCh------
Confidence            679999999999999999987  6899999999999999999988889999998 4578888999999987552      


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                                  .++.++.++|+|||.+++.+..
T Consensus       159 ------------~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          159 ------------CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             ------------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------------hhHHHHHHhcCCCcEEEEEEcC
Confidence                        2467899999999999987754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.54  E-value=9.7e-14  Score=121.76  Aligned_cols=129  Identities=15%  Similarity=0.111  Sum_probs=103.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC-----Cc-ceEEEccCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE-----VE-GDLLLGDMGQG  106 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~-----~~-~~~~~~D~~~~  106 (291)
                      ....++..+.+.+   +.+|||+|||+|.++..++..   +..++++|+|+.+++.|+++.     .+ +.++.+|+.+.
T Consensus        81 ~~~~i~~~~~~~~---~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           81 DAALIVAYAGISP---GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             HHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             HHHHHHHhhCCCC---CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            4456777777766   789999999999999999988   589999999999999999874     23 78999998643


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC--CCCc
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG--FAGG  184 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG--F~~~  184 (291)
                        +..++||+|+++..     +           ...++..+.++|+|||++++...  ...+...+...+.+.|  |...
T Consensus       158 --~~~~~~D~v~~~~~-----~-----------~~~~l~~~~~~L~~gG~l~~~~~--~~~~~~~~~~~l~~~g~~f~~~  217 (255)
T 3mb5_A          158 --IEEENVDHVILDLP-----Q-----------PERVVEHAAKALKPGGFFVAYTP--CSNQVMRLHEKLREFKDYFMKP  217 (255)
T ss_dssp             --CCCCSEEEEEECSS-----C-----------GGGGHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHHHHTGGGBSCC
T ss_pred             --cCCCCcCEEEECCC-----C-----------HHHHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCcccc
Confidence              55788999998522     2           23678999999999999998763  3467778889999999  9873


Q ss_pred             EEE
Q 043626          185 VVV  187 (291)
Q Consensus       185 ~~~  187 (291)
                      .+.
T Consensus       218 ~~~  220 (255)
T 3mb5_A          218 RTI  220 (255)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=2.5e-14  Score=122.25  Aligned_cols=110  Identities=18%  Similarity=0.151  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ  105 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~  105 (291)
                      ..+...+++.+...+   +.+|||||||+|.++..+++.+   ..++++|+|+.+++.|+++.     ..+.++.+|+..
T Consensus        63 ~~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  139 (215)
T 2yxe_A           63 IHMVGMMCELLDLKP---GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL  139 (215)
T ss_dssp             HHHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG
T ss_pred             HHHHHHHHHhhCCCC---CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence            355667777777665   6799999999999999999875   79999999999999998864     347888888743


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .++ ..++||+|++..+++|+.                 ..+.++|+|||++++.+.+.
T Consensus       140 ~~~-~~~~fD~v~~~~~~~~~~-----------------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          140 GYE-PLAPYDRIYTTAAGPKIP-----------------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CCG-GGCCEEEEEESSBBSSCC-----------------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCC-CCCCeeEEEECCchHHHH-----------------HHHHHHcCCCcEEEEEECCC
Confidence            322 257899999999998873                 26899999999999998654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.54  E-value=2.1e-13  Score=126.72  Aligned_cols=138  Identities=12%  Similarity=0.052  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~  106 (291)
                      .....+++.+.+..   ..+|||||||+|.++..+++.  +..++++|+ +.+++.|+++.      ..+.++.+|+.. 
T Consensus       189 ~~~~~l~~~~~~~~---~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-  263 (369)
T 3gwz_A          189 TEAGQVAAAYDFSG---AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-  263 (369)
T ss_dssp             HHHHHHHHHSCCTT---CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-
T ss_pred             hhHHHHHHhCCCcc---CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-
Confidence            33456667766655   679999999999999999987  469999999 99999998754      348899999863 


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCCh------------------
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PESV------------------  166 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~~------------------  166 (291)
                       +++. .||+|++..++|++.+         .....++++++++|+|||++++...  +...                  
T Consensus       264 -~~p~-~~D~v~~~~vlh~~~d---------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~  332 (369)
T 3gwz_A          264 -TIPD-GADVYLIKHVLHDWDD---------DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGA  332 (369)
T ss_dssp             -CCCS-SCSEEEEESCGGGSCH---------HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred             -CCCC-CceEEEhhhhhccCCH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCc
Confidence             3333 8999999999999865         2245899999999999999998532  2210                  


Q ss_pred             -HHHHHHHHHHHHcCCCCcEEEe
Q 043626          167 -AQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       167 -~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                       ...+.+..++.++||....+..
T Consensus       333 ~~t~~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          333 ERSESEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             CBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCCHHHHHHHHHHCCCeEEEEEE
Confidence             1245678889999998644433

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.53  E-value=1.1e-13  Score=128.20  Aligned_cols=136  Identities=16%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL  109 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~  109 (291)
                      ..+++.+.+..   +.+|||||||+|.++..+++.+  ..++++|+ +.+++.|+++..      .+.++.+|+.+.+| 
T Consensus       172 ~~~~~~~~~~~---~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  246 (374)
T 1qzz_A          172 EAPADAYDWSA---VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-  246 (374)
T ss_dssp             HHHHHTSCCTT---CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-
T ss_pred             HHHHHhCCCCC---CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC-
Confidence            34555555554   6799999999999999999874  79999999 999999987642      47899999865343 


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc----CCCh-------------------
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY----PESV-------------------  166 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~----~~~~-------------------  166 (291)
                        ..||+|++..++||+.+         .....++++++++|+|||++++...    +...                   
T Consensus       247 --~~~D~v~~~~vl~~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (374)
T 1qzz_A          247 --VTADVVLLSFVLLNWSD---------EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGR  315 (374)
T ss_dssp             --CCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCC
T ss_pred             --CCCCEEEEeccccCCCH---------HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCc
Confidence              24999999999998855         2245899999999999999988654    3221                   


Q ss_pred             -HHHHHHHHHHHHcCCCCcEEEeC
Q 043626          167 -AQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       167 -~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                       ...+.+..++.++||....+...
T Consensus       316 ~~~~~~~~~ll~~aGf~~~~~~~~  339 (374)
T 1qzz_A          316 VRTRDEVVDLAGSAGLALASERTS  339 (374)
T ss_dssp             CCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCceEEEEEC
Confidence             13456778889999986444443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.53  E-value=4.9e-15  Score=129.54  Aligned_cols=131  Identities=20%  Similarity=0.214  Sum_probs=88.5

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEE-ccCC--CCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLL-GDMG--QGLGLRPG  112 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~-~D~~--~~~~~~~~  112 (291)
                      .+.+++.+.+...  +.+|||||||+|.++..|++.| ..|+|+|+|+.|++.|.++...+.... .++.  ..-.+...
T Consensus        25 L~~~L~~~~~~~~--g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (232)
T 3opn_A           25 LEKALKEFHLEIN--GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG  102 (232)
T ss_dssp             HHHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred             HHHHHHHcCCCCC--CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence            4567777766543  6799999999999999999998 599999999999999888665422211 0110  00001111


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC---------------C----hHHHHHHH
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE---------------S----VAQRELIL  173 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~---------------~----~~~~~~i~  173 (291)
                      .||.+.+..++.++              ..+|.+++++|+|||.+++.+.|.               .    ....+.+.
T Consensus       103 ~~d~~~~D~v~~~l--------------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~  168 (232)
T 3opn_A          103 RPSFTSIDVSFISL--------------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVL  168 (232)
T ss_dssp             CCSEEEECCSSSCG--------------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEhhhH--------------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHH
Confidence            23444444333322              368999999999999999864221               0    12456788


Q ss_pred             HHHHHcCCCC
Q 043626          174 GAAMRAGFAG  183 (291)
Q Consensus       174 ~~~~~aGF~~  183 (291)
                      .++..+||..
T Consensus       169 ~~l~~aGf~v  178 (232)
T 3opn_A          169 KTATQLGFSV  178 (232)
T ss_dssp             HHHHHHTEEE
T ss_pred             HHHHHCCCEE
Confidence            9999999986

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.53  E-value=2.2e-14  Score=134.27  Aligned_cols=114  Identities=15%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcC--------------C
Q 043626           31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GH-QWIGLDISQSMLNIALERE--------------V   94 (291)
Q Consensus        31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~--------------~   94 (291)
                      .....++..+++.+.+.+   +..|||||||+|.++..++.. +. .++|||+|+.|+++|+++.              .
T Consensus       156 Et~~~~i~~il~~l~l~~---gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~  232 (438)
T 3uwp_A          156 ETSFDLVAQMIDEIKMTD---DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA  232 (438)
T ss_dssp             GTHHHHHHHHHHHHCCCT---TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred             CCCHHHHHHHHHhcCCCC---CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            344567788899998876   789999999999999998864 54 5999999999999997631              3


Q ss_pred             cceEEEccCCCCCCCCC--CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           95 EGDLLLGDMGQGLGLRP--GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        95 ~~~~~~~D~~~~~~~~~--~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+.|+++|+.+ +++..  ..||+|+++..+.+ ++           +...|.++++.|||||++++.
T Consensus       233 rVefi~GD~~~-lp~~d~~~~aDVVf~Nn~~F~-pd-----------l~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          233 EYTLERGDFLS-EEWRERIANTSVIFVNNFAFG-PE-----------VDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EEEEEECCTTS-HHHHHHHHTCSEEEECCTTCC-HH-----------HHHHHHHHHTTSCTTCEEEES
T ss_pred             CeEEEECcccC-CccccccCCccEEEEcccccC-ch-----------HHHHHHHHHHcCCCCcEEEEe
Confidence            58999999944 55533  47999999876532 22           667788999999999999984

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.53  E-value=1.9e-14  Score=134.43  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=85.6

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~  110 (291)
                      +.+++.+.+.+   +.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++..      .+.++.+|+ ..++++
T Consensus        53 ~~i~~~~~~~~---~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~  127 (376)
T 3r0q_C           53 NAVFQNKHHFE---GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSV-EDISLP  127 (376)
T ss_dssp             HHHHTTTTTTT---TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCG-GGCCCS
T ss_pred             HHHHhccccCC---CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECch-hhcCcC
Confidence            33434444444   67999999999999999999985 99999999 99999987652      278999998 445554


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                       ++||+|++..+.+++....        .+..++..++++|+|||.+++.
T Consensus       128 -~~~D~Iv~~~~~~~l~~e~--------~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          128 -EKVDVIISEWMGYFLLRES--------MFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             -SCEEEEEECCCBTTBTTTC--------THHHHHHHHHHHEEEEEEEESS
T ss_pred             -CcceEEEEcChhhcccchH--------HHHHHHHHHHhhCCCCeEEEEe
Confidence             8999999977666654211        1668899999999999999873

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.53  E-value=5.3e-14  Score=123.52  Aligned_cols=126  Identities=20%  Similarity=0.129  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc-----------
Q 043626           31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE-----------   95 (291)
Q Consensus        31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~-----------   95 (291)
                      .+...+.+.+++.+....   +.+|||+|||+|.++..++..    +..|+|+|+|+.|++.|+++...           
T Consensus        34 ~la~~l~~~~l~~~~~~~---~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~  110 (250)
T 1o9g_A           34 RLATEIFQRALARLPGDG---PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAREL  110 (250)
T ss_dssp             HHHHHHHHHHHHTSSCCS---CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCC---CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccch
Confidence            344466777776654333   679999999999999999876    47899999999999999865321           


Q ss_pred             -----------------------ce-------------EEEccCCCCCCC----CCCcccEEEECCchhhhccccccCCc
Q 043626           96 -----------------------GD-------------LLLGDMGQGLGL----RPGVVDGAISISAVQWLCNADKASHE  135 (291)
Q Consensus        96 -----------------------~~-------------~~~~D~~~~~~~----~~~~fD~Vis~~~l~~l~~~~~~~~~  135 (291)
                                             +.             ++++|+.+..+.    ...+||+|+|+.++.+..+..  ...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~--~~~  188 (250)
T 1o9g_A          111 ERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWE--GQV  188 (250)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSS--SCC
T ss_pred             hhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccccc--ccc
Confidence                                   45             999998653321    345899999987665543211  012


Q ss_pred             hHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          136 PRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       136 p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .......++..++++|+|||++++..
T Consensus       189 ~~~~~~~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          189 PGQPVAGLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccHHHHHHHHHHHhcCCCcEEEEeC
Confidence            33447789999999999999999843

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.52  E-value=5.3e-14  Score=118.87  Aligned_cols=122  Identities=19%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-------------------  108 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-------------------  108 (291)
                      +.+|||||||+|.++..+++.    +..++|+|+|+.+      ....+.++.+|+.. .+                   
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~-~~~~~~~~~~~i~~~~~~~~~   95 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGK-DNMNNIKNINYIDNMNNNSVD   95 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTT-TSSCCC-----------CHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccc-hhhhhhccccccccccchhhH
Confidence            679999999999999999986    3689999999831      23457899999854 33                   


Q ss_pred             ------CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          109 ------LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       109 ------~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                            +..++||+|+++.+++|.................++..++++|+|||.+++.++...  ....+...+.. .|.
T Consensus        96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~l~~~l~~-~f~  172 (201)
T 2plw_A           96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS--QTNNLKTYLKG-MFQ  172 (201)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--THHHHHHHHHT-TEE
T ss_pred             HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC--CHHHHHHHHHH-HHh
Confidence                  456799999999887764210000000001123588999999999999999776532  23344444443 465


Q ss_pred             C
Q 043626          183 G  183 (291)
Q Consensus       183 ~  183 (291)
                      .
T Consensus       173 ~  173 (201)
T 2plw_A          173 L  173 (201)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.52  E-value=7.5e-14  Score=129.53  Aligned_cols=121  Identities=10%  Similarity=0.083  Sum_probs=95.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC-CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL-GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~-~~~~~~fD~Vis~~~  122 (291)
                      ..+|||||||+|.++..+++.  +..++++|+ +.|++.|+++..      .+.++.+|+.+.- |++ ++||+|++..+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v  257 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF  257 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence            679999999999999999985  479999999 999999998743      4789999986532 444 78999999999


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCCh-------------------------HHHHHHHHH
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PESV-------------------------AQRELILGA  175 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~~-------------------------~~~~~i~~~  175 (291)
                      +|++.+         .....+|++++++|+|||++++...  +...                         ...+.+..+
T Consensus       258 lh~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  328 (363)
T 3dp7_A          258 LDCFSE---------EEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRC  328 (363)
T ss_dssp             STTSCH---------HHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHH
T ss_pred             hhhCCH---------HHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHH
Confidence            998854         2356899999999999999988532  2211                         124567778


Q ss_pred             HHHcCCCC
Q 043626          176 AMRAGFAG  183 (291)
Q Consensus       176 ~~~aGF~~  183 (291)
                      +.++||..
T Consensus       329 l~~AGf~~  336 (363)
T 3dp7_A          329 IENAGLEV  336 (363)
T ss_dssp             HHTTTEEE
T ss_pred             HHHcCCeE
Confidence            88888865

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.52  E-value=1.3e-14  Score=123.86  Aligned_cols=114  Identities=13%  Similarity=-0.008  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+... +   +.+|||+|||+|.++..++..+ ..|+|+|+|+.|++.|+++.     ..+.++++|+.+.+
T Consensus        40 ~~~~~l~~~l~~~~~---~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~  116 (202)
T 2fpo_A           40 RVRETLFNWLAPVIV---DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  116 (202)
T ss_dssp             HHHHHHHHHHHHHHT---TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHhhcC---CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence            3444555555432 2   5699999999999999888877 69999999999999998865     25789999975545


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEcC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIYP  163 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~~  163 (291)
                      ++..++||+|+++..++ ..+           ...++..+.+  +|+|||.+++...+
T Consensus       117 ~~~~~~fD~V~~~~p~~-~~~-----------~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          117 AQKGTPHNIVFVDPPFR-RGL-----------LEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SSCCCCEEEEEECCSSS-TTT-----------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             hhcCCCCCEEEECCCCC-CCc-----------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence            65667999999986643 212           4466777765  59999999998754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.52  E-value=2.9e-15  Score=122.93  Aligned_cols=101  Identities=18%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCC---CCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGL---RPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~---~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++..+..++|+|+|+.|++.|+++..    .+.++++|+.+.++.   ..++||+|+++.+++
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence            5699999999999999999999789999999999999988654    578888887442221   134899999987765


Q ss_pred             hhccccccCCchHHHHHHHHHHHH--HhccCCcEEEEEEcCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLY--RCLARGARAVFQIYPES  165 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~--~~LkpgG~lv~~~~~~~  165 (291)
                        .+           ...++..+.  ++|+|||.+++.+.+..
T Consensus       122 --~~-----------~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          122 --MD-----------LAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             --SC-----------TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             --hh-----------HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence              22           224455555  99999999999886543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.52  E-value=1.2e-13  Score=124.53  Aligned_cols=107  Identities=15%  Similarity=0.123  Sum_probs=84.1

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhH-HHHHH-cCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSG-ETLSE-NGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG  108 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~-~~L~~-~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~  108 (291)
                      +++.-..++.+++   +.+|||||||+|.++ ..+++ .+.+|+|+|+|+.|++.|+++.     ..+.++++|+.+ ++
T Consensus       110 l~~~E~~la~l~~---g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~  185 (298)
T 3fpf_A          110 LLKNEAALGRFRR---GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-ID  185 (298)
T ss_dssp             HHHHHHHHTTCCT---TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GG
T ss_pred             HHHHHHHHcCCCC---cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CC
Confidence            3444445677776   789999999998765 44555 3789999999999999999864     347899999844 44


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                        +++||+|++...   ..+           ...++..++++|+|||++++...
T Consensus       186 --d~~FDvV~~~a~---~~d-----------~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 --GLEFDVLMVAAL---AEP-----------KRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             --GCCCSEEEECTT---CSC-----------HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             --CCCcCEEEECCC---ccC-----------HHHHHHHHHHHcCCCcEEEEEcC
Confidence              689999997644   233           56899999999999999999764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.52  E-value=5.5e-14  Score=119.17  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=95.1

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-------CC--
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-------LR--  110 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-------~~--  110 (291)
                      +++.+.+..+  +.+|||+|||+|.++..+++.+..|+|+|+++..      ....+.++++|+.+...       +.  
T Consensus        16 i~~~~~~~~~--g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~   87 (191)
T 3dou_A           16 LLDRYRVVRK--GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREE   87 (191)
T ss_dssp             HHHHHCCSCT--TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCCC--CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence            3344444333  7799999999999999999999999999999742      23568999999854210       11  


Q ss_pred             -CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          111 -PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       111 -~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                       .++||+|+|+.+....................++..+.++|+|||.|++.++....  ...+...+ +..|.. +.+..
T Consensus        88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l-~~~F~~-v~~~k  163 (191)
T 3dou_A           88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIW-RKNFSS-YKISK  163 (191)
T ss_dssp             TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHH-GGGEEE-EEEEC
T ss_pred             cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHH-HHhcCE-EEEEC
Confidence             14899999986543211100000011122467888999999999999998876543  33444444 445876 44445


Q ss_pred             CCCCC-CCcEEEEEeeCC
Q 043626          190 PHSSK-SRKEFLVLTCGP  206 (291)
Q Consensus       190 p~~~~-~~~~~l~l~~g~  206 (291)
                      |.+.+ ......++..|.
T Consensus       164 P~asR~~s~E~y~v~~~~  181 (191)
T 3dou_A          164 PPASRGSSSEIYIMFFGF  181 (191)
T ss_dssp             C------CCEEEEEEEEE
T ss_pred             CCCccCCCceEEEEEeee
Confidence            55543 333333333443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.51  E-value=1.9e-13  Score=121.51  Aligned_cols=130  Identities=18%  Similarity=0.125  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC--------CcceEEEccC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE--------VEGDLLLGDM  103 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~--------~~~~~~~~D~  103 (291)
                      .....+++.+.+.+   +.+|||+|||+|.++..++..   +..++++|+|+.+++.|+++.        ..+.++.+|+
T Consensus        86 ~~~~~i~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~  162 (280)
T 1i9g_A           86 KDAAQIVHEGDIFP---GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  162 (280)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             HHHHHHHHHcCCCC---CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence            44567777777766   679999999999999999985   589999999999999998763        3578899998


Q ss_pred             CCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHH-cCCC
Q 043626          104 GQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMR-AGFA  182 (291)
Q Consensus       104 ~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~-aGF~  182 (291)
                      .+ .++..++||+|++..     ++           ...++..+.++|+|||++++....  ..+...+...+.. .+|.
T Consensus       163 ~~-~~~~~~~~D~v~~~~-----~~-----------~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          163 AD-SELPDGSVDRAVLDM-----LA-----------PWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             GG-CCCCTTCEEEEEEES-----SC-----------GGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBC
T ss_pred             Hh-cCCCCCceeEEEECC-----cC-----------HHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHhcCCcC
Confidence            44 466678999999842     22           236789999999999999997742  3566667777776 7887


Q ss_pred             CcEE
Q 043626          183 GGVV  186 (291)
Q Consensus       183 ~~~~  186 (291)
                      ....
T Consensus       224 ~~~~  227 (280)
T 1i9g_A          224 EPRA  227 (280)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            6333

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.51  E-value=1.6e-13  Score=127.54  Aligned_cols=134  Identities=20%  Similarity=0.264  Sum_probs=100.5

Q ss_pred             HHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCc
Q 043626           37 SERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        37 ~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~  113 (291)
                      ...+++.+. +..   ..+|||||||+|.++..|++..  ..++++|+ +.|++.+++. ..+.++.+|+.+  +++.+ 
T Consensus       191 ~~~~~~~~~~~~~---~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~p~~-  262 (368)
T 3reo_A          191 MKKILEMYNGFEG---LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD--GVPKG-  262 (368)
T ss_dssp             HHHHHTTCCTTTT---CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT--CCCCC-
T ss_pred             HHHHHHhcccccC---CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC--CCCCC-
Confidence            344455444 333   6799999999999999999864  78999999 9999887654 568999999965  44444 


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCCh-------------------------
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PESV-------------------------  166 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~~-------------------------  166 (291)
                       |+|++..++|++++         .....+|++++++|+|||++++...  +...                         
T Consensus       263 -D~v~~~~vlh~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  332 (368)
T 3reo_A          263 -DAIFIKWICHDWSD---------EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKE  332 (368)
T ss_dssp             -SEEEEESCGGGBCH---------HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCC
T ss_pred             -CEEEEechhhcCCH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCcc
Confidence             99999999998855         2356899999999999999998532  2110                         


Q ss_pred             HHHHHHHHHHHHcCCCCcEEEe
Q 043626          167 AQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      ...+.+..++.++||....+..
T Consensus       333 rt~~e~~~ll~~AGF~~v~~~~  354 (368)
T 3reo_A          333 RTEKEFQALAMASGFRGFKVAS  354 (368)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCHHHHHHHHHHCCCeeeEEEE
Confidence            0145678889999998733333

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.51  E-value=6.8e-15  Score=128.11  Aligned_cols=108  Identities=15%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL  107 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~  107 (291)
                      ....+..++...+   +.+|||||||+|.++..|+.  .+..|+++|+|+.+++.|+++..      .+.++.+|+.+.+
T Consensus        59 ~~~~l~~~~~~~~---~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (232)
T 3ntv_A           59 TLDLIKQLIRMNN---VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQF  135 (232)
T ss_dssp             HHHHHHHHHHHHT---CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCH
T ss_pred             HHHHHHHHHhhcC---CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH
Confidence            3344444444444   67999999999999999998  45899999999999999988652      5789999986655


Q ss_pred             C-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          108 G-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       108 ~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      + ...++||+|++......              +..++..+.++|+|||++++.
T Consensus       136 ~~~~~~~fD~V~~~~~~~~--------------~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          136 ENVNDKVYDMIFIDAAKAQ--------------SKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             HHHTTSCEEEEEEETTSSS--------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             HhhccCCccEEEEcCcHHH--------------HHHHHHHHHHhcCCCeEEEEe
Confidence            5 44789999997643222              567999999999999999984

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.51  E-value=2.1e-13  Score=126.06  Aligned_cols=139  Identities=11%  Similarity=0.070  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----C-cceEEEccCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----V-EGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~-~~~~~~~D~~~~  106 (291)
                      .....+++.+.+..   +.+|||||||+|.++..+++.  +.+++++|+ +.+++.|+++.     . .+.++.+|+.+ 
T Consensus       177 ~~~~~l~~~~~~~~---~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-  251 (359)
T 1x19_A          177 FAIQLLLEEAKLDG---VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK-  251 (359)
T ss_dssp             HHHHHHHHHCCCTT---CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT-
T ss_pred             hhHHHHHHhcCCCC---CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc-
Confidence            34456777776655   679999999999999999987  469999999 99999998763     2 38899999854 


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--C-------------------C
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--E-------------------S  165 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~-------------------~  165 (291)
                      .+++.  +|+|++..++|++.+         .....++++++++|+|||++++....  .                   .
T Consensus       252 ~~~~~--~D~v~~~~vlh~~~d---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~  320 (359)
T 1x19_A          252 ESYPE--ADAVLFCRILYSANE---------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPF  320 (359)
T ss_dssp             SCCCC--CSEEEEESCGGGSCH---------HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSC
T ss_pred             CCCCC--CCEEEEechhccCCH---------HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCC
Confidence            35543  399999999998854         33678999999999999999775311  0                   0


Q ss_pred             h----HHHHHHHHHHHHcCCCCcEEEeC
Q 043626          166 V----AQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       166 ~----~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      .    ...+.+.+++.++||....+..+
T Consensus       321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~  348 (359)
T 1x19_A          321 SVLGFKEQARYKEILESLGYKDVTMVRK  348 (359)
T ss_dssp             CCCCCCCGGGHHHHHHHHTCEEEEEEEE
T ss_pred             cccCCCCHHHHHHHHHHCCCceEEEEec
Confidence            0    34557788899999986444443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.50  E-value=2.4e-13  Score=117.31  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCC--CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGL--GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..|++. +  ..|+|+|+|+.|++.+.++.   .++.++.+|+....  ....++||+|++..+.
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~  153 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ  153 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCCC
Confidence            679999999999999999976 3  79999999999988887654   45789999986521  2224689999987542


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .+             ....++.+++++|+|||.+++.+.
T Consensus       154 ~~-------------~~~~~l~~~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          154 PT-------------QAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             TT-------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Hh-------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence            11             134569999999999999999753

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.50  E-value=4.2e-14  Score=128.89  Aligned_cols=108  Identities=19%  Similarity=0.185  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC---eEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH---QWIGLDISQSMLNIALERE-----VEGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~---~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~  106 (291)
                      .+...+++.+.+.+   +.+|||||||+|.++..+++.+.   .|+|+|+|+.+++.|+++.     .++.++.+|+.+.
T Consensus        62 ~~~~~l~~~l~~~~---~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVGLDK---GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCC---cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence            56777888887766   77999999999999999998754   4999999999999998864     3478999998543


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                       +...++||+|++..+++|+.                 ..+.++|+|||++++.+.+
T Consensus       139 -~~~~~~fD~Iv~~~~~~~~~-----------------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          139 -VPEFSPYDVIFVTVGVDEVP-----------------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             -CGGGCCEEEEEECSBBSCCC-----------------HHHHHHEEEEEEEEEEBCB
T ss_pred             -cccCCCeEEEEEcCCHHHHH-----------------HHHHHhcCCCcEEEEEECC
Confidence             33457899999999998873                 3578899999999999754

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.50  E-value=1.4e-13  Score=127.94  Aligned_cols=134  Identities=19%  Similarity=0.194  Sum_probs=101.3

Q ss_pred             HHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCc
Q 043626           37 SERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        37 ~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~  113 (291)
                      ...+++.+. ++.   ..+|||||||+|..+..+++.+  ..++++|+ +.|++.|++. ..+.++.+|+.+  +++.  
T Consensus       197 ~~~l~~~~~~~~~---~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~~--  267 (372)
T 1fp1_D          197 MKRMLEIYTGFEG---ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-SGIEHVGGDMFA--SVPQ--  267 (372)
T ss_dssp             HHHHHHHCCTTTT---CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT--CCCC--
T ss_pred             HHHHHHHhhccCC---CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc--CCCC--
Confidence            455666664 443   6799999999999999999875  68899999 9999888763 568999999965  4433  


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE--cCCCh------------------------H
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI--YPESV------------------------A  167 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~--~~~~~------------------------~  167 (291)
                      ||+|++..++||+.+         .....+|++++++|+|||++++..  .+...                        .
T Consensus       268 ~D~v~~~~~lh~~~d---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  338 (372)
T 1fp1_D          268 GDAMILKAVCHNWSD---------EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRER  338 (372)
T ss_dssp             EEEEEEESSGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEecccccCCH---------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccC
Confidence            999999999999865         224589999999999999999862  22110                        0


Q ss_pred             HHHHHHHHHHHcCCCCcEEEe
Q 043626          168 QRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       168 ~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      ..+.+..++.++||....+..
T Consensus       339 t~~e~~~ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          339 TEKQYEKLSKLSGFSKFQVAC  359 (372)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEE
T ss_pred             CHHHHHHHHHHCCCceEEEEE
Confidence            234667888999998633333

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.50  E-value=8.2e-14  Score=124.76  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++..      .+.++++|+.+..+  .++||+|+++....
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p~~  203 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVR  203 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSS
T ss_pred             CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--cCCccEEEECCchh
Confidence            56999999999999999999886 69999999999999988642      26799999855433  78999999864422


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC----ChHHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE----SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~----~~~~~~~i~~~~~~aGF~~  183 (291)
                                     ...++..+.++|+|||.+++.....    .....+.+...+.++||..
T Consensus       204 ---------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~  251 (278)
T 2frn_A          204 ---------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             ---------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ---------------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCee
Confidence                           2467889999999999999865432    2345677888999999976

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.50  E-value=1.2e-13  Score=129.06  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQG  106 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~  106 (291)
                      ++.+++.+....   +.+|||+|||+|.++..++..  +..|+|+|+|+.|++.|+++..        .+.++.+|+.+ 
T Consensus       211 ~~~ll~~l~~~~---~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-  286 (375)
T 4dcm_A          211 ARFFMQHLPENL---EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-  286 (375)
T ss_dssp             HHHHHHTCCCSC---CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred             HHHHHHhCcccC---CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence            345577766554   579999999999999999998  5899999999999999988653        26779999865 


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                       ++..++||+|+++..+++....      +......+|..+.++|+|||.+++.....
T Consensus       287 -~~~~~~fD~Ii~nppfh~~~~~------~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          287 -GVEPFRFNAVLCNPPFHQQHAL------TDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             -TCCTTCEEEEEECCCC-------------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             -cCCCCCeeEEEECCCcccCccc------CHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence             4557899999999988763221      11113478999999999999999976543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.49  E-value=3.1e-14  Score=131.63  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=80.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|.++..+++.| ..|+|+|+|+ |++.|+++..      .+.++.+|+ ..++++.++||+|++..+.+
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Iis~~~~~  144 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKV-EEVELPVEKVDIIISEWMGY  144 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT-TTCCCSSSCEEEEEECCCBB
T ss_pred             CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcH-HHccCCCCceEEEEEccccc
Confidence            6799999999999999999997 4999999994 9999987642      278999999 44677789999999987655


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ++....        .+..++..+.++|+|||.+++
T Consensus       145 ~l~~~~--------~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          145 CLFYES--------MLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             TBTBTC--------CHHHHHHHHHHHEEEEEEEES
T ss_pred             cccCch--------hHHHHHHHHHHhCCCCCEEcc
Confidence            543211        167899999999999999875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.49  E-value=5e-14  Score=129.64  Aligned_cols=133  Identities=12%  Similarity=0.130  Sum_probs=101.3

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~  110 (291)
                      .+++.+.....  +.+|||||||+|.++..+++.  +..++++|+ +.+++.++++..      .+.++.+|+.+..++.
T Consensus       169 ~~l~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFAR--ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGTT--CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcCC--CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence            45555544432  579999999999999999987  479999999 889998887532      3789999986543234


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC----------------------h
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES----------------------V  166 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~----------------------~  166 (291)
                      ++.||+|++..++||+.+         .....++++++++|+|||++++...  +..                      .
T Consensus       246 ~~~~D~v~~~~vlh~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDA---------REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGEL  316 (352)
T ss_dssp             TCCEEEEEEESCGGGSCH---------HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCC
T ss_pred             CCCccEEEEecccccCCH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCc
Confidence            667999999999999854         2257899999999999999998532  111                      1


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 043626          167 AQRELILGAAMRAGFAG  183 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~  183 (291)
                      ...+.+..++.++||..
T Consensus       317 ~t~~e~~~ll~~aGf~~  333 (352)
T 3mcz_A          317 HPTPWIAGVVRDAGLAV  333 (352)
T ss_dssp             CCHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHCCCce
Confidence            12456788899999975

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.49  E-value=4.7e-13  Score=113.20  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      +.+|||+|||+|.++..++..+ ..++|+|+|+.|++.|+++...+.++++|+.+ ++   ++||+|+++.+++|+.+..
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~---~~~D~v~~~~p~~~~~~~~  127 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-IS---GKYDTWIMNPPFGSVVKHS  127 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CC---CCEEEEEECCCC-------
T ss_pred             CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CC---CCeeEEEECCCchhccCch
Confidence            6799999999999999999987 47999999999999999988788999999844 43   7999999999999875411


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                               ...++..+.++|  | .+++...+   .....+...+...|
T Consensus       128 ---------~~~~l~~~~~~~--g-~~~~~~~~---~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          128 ---------DRAFIDKAFETS--M-WIYSIGNA---KARDFLRREFSARG  162 (200)
T ss_dssp             ---------CHHHHHHHHHHE--E-EEEEEEEG---GGHHHHHHHHHHHE
T ss_pred             ---------hHHHHHHHHHhc--C-cEEEEEcC---chHHHHHHHHHHCC
Confidence                     246888899888  4 44444433   33456677777777

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.49  E-value=3.8e-14  Score=118.00  Aligned_cols=116  Identities=16%  Similarity=0.072  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+.....  +.+|||+|||+|.++..++..+ ..++|+|+|+.|++.|+++.      ..+.++.+|+.+.+
T Consensus        30 ~~~~~~~~~l~~~~~--~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  107 (187)
T 2fhp_A           30 KVKESIFNMIGPYFD--GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL  107 (187)
T ss_dssp             HHHHHHHHHHCSCCS--SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHhhcC--CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHH
Confidence            455666677643222  6799999999999999888886 79999999999999998865      24789999975422


Q ss_pred             ---CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHH--HHhccCCcEEEEEEcCC
Q 043626          108 ---GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSL--YRCLARGARAVFQIYPE  164 (291)
Q Consensus       108 ---~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l--~~~LkpgG~lv~~~~~~  164 (291)
                         ++..++||+|+++.++++ .+           ...++..+  .++|+|||.+++.+...
T Consensus       108 ~~~~~~~~~fD~i~~~~~~~~-~~-----------~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          108 EQFYEEKLQFDLVLLDPPYAK-QE-----------IVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHHHTTCCEEEEEECCCGGG-CC-----------HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHHhcCCCCCEEEECCCCCc-hh-----------HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence               223678999999877442 11           34555566  88899999999987543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.49  E-value=6.9e-14  Score=120.61  Aligned_cols=108  Identities=20%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             HHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHcCC-------eEEEEeCCHHHHHHHHhcC----------Ccc
Q 043626           36 LSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSENGH-------QWIGLDISQSMLNIALERE----------VEG   96 (291)
Q Consensus        36 ~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-------~v~gvDis~~ml~~a~~~~----------~~~   96 (291)
                      +...+++.+.  +.+   +.+|||||||+|.++..+++.+.       .|+++|+++.+++.|+++.          ..+
T Consensus        66 ~~~~~~~~l~~~~~~---~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           66 MHALSLKRLINVLKP---GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF  142 (227)
T ss_dssp             HHHHHHHHHTTTSCT---TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred             HHHHHHHHHHhhCCC---CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence            4456667663  443   67999999999999999998754       9999999999999998863          357


Q ss_pred             eEEEccCCCCCC---CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           97 DLLLGDMGQGLG---LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        97 ~~~~~D~~~~~~---~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .++.+|+....+   +..++||+|++..+++++                 +..+.++|+|||++++.+.+
T Consensus       143 ~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-----------------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          143 KIIHKNIYQVNEEEKKELGLFDAIHVGASASEL-----------------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             EEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC-----------------CHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECChHhcccccCccCCCcCEEEECCchHHH-----------------HHHHHHhcCCCcEEEEEEcc
Confidence            889999854321   345789999999888765                 35688999999999998865

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.49  E-value=2.1e-13  Score=126.62  Aligned_cols=134  Identities=18%  Similarity=0.226  Sum_probs=101.6

Q ss_pred             HHHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCC
Q 043626           36 LSERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPG  112 (291)
Q Consensus        36 ~~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~  112 (291)
                      ....+++.+. +..   ..+|||||||+|.++..|++..  ..++++|+ +.+++.|++. ..+.++.+|+.+  +++.+
T Consensus       188 ~~~~~~~~~~~~~~---~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~--~~p~~  260 (364)
T 3p9c_A          188 ITKKLLELYHGFEG---LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK--EVPSG  260 (364)
T ss_dssp             HHHHHHHHCCTTTT---CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT--CCCCC
T ss_pred             HHHHHHHhcccccC---CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC--CCCCC
Confidence            3455666665 443   6799999999999999999863  68999999 8898887654 568999999965  44444


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCCh------------------------
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PESV------------------------  166 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~~------------------------  166 (291)
                        |+|++.+++|++++         .....+|++++++|+|||++++...  +...                        
T Consensus       261 --D~v~~~~vlh~~~d---------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~  329 (364)
T 3p9c_A          261 --DTILMKWILHDWSD---------QHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGR  329 (364)
T ss_dssp             --SEEEEESCGGGSCH---------HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCC
T ss_pred             --CEEEehHHhccCCH---------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCc
Confidence              99999999998854         2367899999999999999998532  2110                        


Q ss_pred             -HHHHHHHHHHHHcCCCCcEEE
Q 043626          167 -AQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       167 -~~~~~i~~~~~~aGF~~~~~~  187 (291)
                       ...+.+..++.++||+...+.
T Consensus       330 ~rt~~e~~~ll~~AGF~~v~~~  351 (364)
T 3p9c_A          330 ERYEREFQALARGAGFTGVKST  351 (364)
T ss_dssp             CCBHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCHHHHHHHHHHCCCceEEEE
Confidence             013457788999999873333

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.49  E-value=5.9e-13  Score=118.73  Aligned_cols=139  Identities=17%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCC---chhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc-----ceEEEcc
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGS---GLSGETLSEN--GHQWIGLDISQSMLNIALEREVE-----GDLLLGD  102 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGs---G~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D  102 (291)
                      ......+++..|.....  ...|||||||+   |+....+...  +..|++||+|+.||+.|+.+...     +.++++|
T Consensus        62 nr~fl~rav~~l~~~~g--~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD  139 (277)
T 3giw_A           62 NRDWMNRAVAHLAKEAG--IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEAD  139 (277)
T ss_dssp             HHHHHHHHHHHHHHTSC--CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECC
T ss_pred             HHHHHHHHHHHhccccC--CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEec
Confidence            34566677777753321  46899999997   3444444332  58999999999999999987643     7899999


Q ss_pred             CCCCC-----CCCCCccc-----EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC--hHHHH
Q 043626          103 MGQGL-----GLRPGVVD-----GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES--VAQRE  170 (291)
Q Consensus       103 ~~~~~-----~~~~~~fD-----~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~--~~~~~  170 (291)
                      +.+.-     +...++||     .|+++.+|||+.+.+.        ...++..+++.|+|||+|++++....  +...+
T Consensus       140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~--------p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~  211 (277)
T 3giw_A          140 MLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD--------AVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVG  211 (277)
T ss_dssp             TTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC--------HHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHH
T ss_pred             ccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh--------HHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHH
Confidence            95521     11124455     6899999999976321        35789999999999999999876533  34556


Q ss_pred             HHHHHHHHcCC
Q 043626          171 LILGAAMRAGF  181 (291)
Q Consensus       171 ~i~~~~~~aGF  181 (291)
                      .+.......|-
T Consensus       212 ~~~~~~~~~g~  222 (277)
T 3giw_A          212 RVAREYAARNM  222 (277)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHhcCC
Confidence            66666665553

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.49  E-value=2.1e-13  Score=125.85  Aligned_cols=135  Identities=19%  Similarity=0.149  Sum_probs=102.3

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL  109 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~  109 (291)
                      ..+++.+.+.+   +.+|||||||+|.++..+++.+  ..++++|+ +.+++.|+++..      .+.++.+|+.+.+| 
T Consensus       173 ~~l~~~~~~~~---~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  247 (360)
T 1tw3_A          173 DAPAAAYDWTN---VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-  247 (360)
T ss_dssp             HHHHHHSCCTT---CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-
T ss_pred             HHHHHhCCCcc---CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-
Confidence            34566666554   6799999999999999999874  68999999 999999987641      47899999865443 


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC---CC---h-----------------
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP---ES---V-----------------  166 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~---~~---~-----------------  166 (291)
                        ..||+|++..++|++.+         .....++++++++|+|||++++....   ..   .                 
T Consensus       248 --~~~D~v~~~~vl~~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (360)
T 1tw3_A          248 --RKADAIILSFVLLNWPD---------HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGAL  316 (360)
T ss_dssp             --SCEEEEEEESCGGGSCH---------HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCC
T ss_pred             --CCccEEEEcccccCCCH---------HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcC
Confidence              34999999999998854         22468999999999999999986432   11   0                 


Q ss_pred             HHHHHHHHHHHHcCCCCcEEEe
Q 043626          167 AQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      ...+.+..++.++||....+..
T Consensus       317 ~t~~e~~~ll~~aGf~~~~~~~  338 (360)
T 1tw3_A          317 RTREKWDGLAASAGLVVEEVRQ  338 (360)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCeEEEEEe
Confidence            1245677889999998633333

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.49  E-value=1.3e-13  Score=123.87  Aligned_cols=123  Identities=22%  Similarity=0.236  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+....   +.+|||||||+|.++..++.. +..|+|+|+|+.+++.|+++..      .+.++++|+...+
T Consensus       110 ~lv~~~l~~~~~~~---~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~  186 (284)
T 1nv8_A          110 ELVELALELIRKYG---IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF  186 (284)
T ss_dssp             HHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG
T ss_pred             HHHHHHHHHhcccC---CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc
Confidence            45566666654333   569999999999999999988 7899999999999999998742      2789999986533


Q ss_pred             CCCCCcc---cEEEECCchhhhc---cccccCCchHHHHH------HHHHHHH-HhccCCcEEEEEEcCC
Q 043626          108 GLRPGVV---DGAISISAVQWLC---NADKASHEPRLRLK------AFFGSLY-RCLARGARAVFQIYPE  164 (291)
Q Consensus       108 ~~~~~~f---D~Vis~~~l~~l~---~~~~~~~~p~~~l~------~~l~~l~-~~LkpgG~lv~~~~~~  164 (291)
                         +++|   |+|+|+.......   ..+.. ++|...+.      .++..+. +.|+|||.+++.+...
T Consensus       187 ---~~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          187 ---KEKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             ---GGGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             ---ccccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence               2578   9999984332111   11222 56665543      7899999 9999999999987544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.49  E-value=8.4e-14  Score=121.81  Aligned_cols=96  Identities=19%  Similarity=0.080  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc------CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC--CCCCC-CcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN------GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG--LGLRP-GVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~------g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~--~~~~~-~~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..|++.      +.+|+|||+|+.|++.|+.....+.++++|+.+.  +++.. .+||+|++..+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~  161 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  161 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence            569999999999999999986      5899999999999998875445689999998653  34333 47999998654


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHH-hccCCcEEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYR-CLARGARAVFQI  161 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~-~LkpgG~lv~~~  161 (291)
                        |. +           +..+|.++++ +|+|||++++..
T Consensus       162 --~~-~-----------~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          162 --HA-N-----------TFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             --CS-S-----------HHHHHHHHHHHTCCTTCEEEECS
T ss_pred             --hH-h-----------HHHHHHHHHHhhCCCCCEEEEEe
Confidence              21 2           5678999997 999999999963

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.48  E-value=9.2e-14  Score=124.55  Aligned_cols=142  Identities=13%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-C------cceEE--EccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-V------EGDLL--LGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~------~~~~~--~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..+++. ..|+|||+|+ |+..+.++. .      ++.++  ++|+.. ++  +++||+|+|..+
T Consensus        83 g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~Vvsd~~  157 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK-ME--PFQADTVLCDIG  157 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CC--CCCCSEEEECCC
T ss_pred             CCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh-CC--CCCcCEEEECCC
Confidence            679999999999999999998 7999999999 754443322 1      46788  888843 44  689999999876


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCc--EEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGA--RAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFL  200 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG--~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l  200 (291)
                       ++..+..   .+... ...+|..+.++|+|||  .+++.++.........+...+.+ .|....+ . |...+....-+
T Consensus       158 -~~~~~~~---~d~~~-~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~-~f~~v~v-~-P~~sR~~s~E~  229 (276)
T 2wa2_A          158 -ESNPTAA---VEASR-TLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQA-RFGGGLI-R-VPLSRNSTHEM  229 (276)
T ss_dssp             -CCCSCHH---HHHHH-HHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHH-HHCCEEE-C-CTTSCTTCCCE
T ss_pred             -cCCCchh---hhHHH-HHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHH-HcCCEEE-E-cCCCCCcchhe
Confidence             4322200   00011 1137899999999999  99997664222222223333333 3665333 3 55554433333


Q ss_pred             EEeeCC
Q 043626          201 VLTCGP  206 (291)
Q Consensus       201 ~l~~g~  206 (291)
                      ++..+.
T Consensus       230 y~v~~~  235 (276)
T 2wa2_A          230 YFVSGI  235 (276)
T ss_dssp             EEESSC
T ss_pred             EEeccc
Confidence            344444

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.48  E-value=1e-13  Score=120.40  Aligned_cols=125  Identities=17%  Similarity=0.202  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCC-HHHHHHH---HhcC-----CcceEEEccCCCCCCCC-CCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDIS-QSMLNIA---LERE-----VEGDLLLGDMGQGLGLR-PGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis-~~ml~~a---~~~~-----~~~~~~~~D~~~~~~~~-~~~fD~Vis  119 (291)
                      +.+|||||||+|.++..|+..  +..|+|||+| +.|++.|   +++.     .++.++++|+. .+|.. .+.+|.|++
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~-~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAE-SLPFELKNIADSISI  103 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTT-BCCGGGTTCEEEEEE
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHH-HhhhhccCeEEEEEE
Confidence            569999999999999999954  5789999999 7888877   5432     35789999984 44421 245555555


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-CC---------------ChHHH--HHHHHHHHHcCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-PE---------------SVAQR--ELILGAAMRAGF  181 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-~~---------------~~~~~--~~i~~~~~~aGF  181 (291)
                      ++...+...      ........+|.+++++|||||++++.+. ..               .....  +.+...+.++||
T Consensus       104 ~~~~~~~~~------~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf  177 (225)
T 3p2e_A          104 LFPWGTLLE------YVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGF  177 (225)
T ss_dssp             ESCCHHHHH------HHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTC
T ss_pred             eCCCcHHhh------hhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCC
Confidence            543322100      0000024689999999999999999221 11               01111  137788899999


Q ss_pred             CC
Q 043626          182 AG  183 (291)
Q Consensus       182 ~~  183 (291)
                      ..
T Consensus       178 ~v  179 (225)
T 3p2e_A          178 RI  179 (225)
T ss_dssp             EE
T ss_pred             Ce
Confidence            75

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.48  E-value=2.1e-14  Score=119.12  Aligned_cols=104  Identities=13%  Similarity=0.059  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-cceEEEccCCCCCCC---CCCcccEEEECCchhhh-
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-EGDLLLGDMGQGLGL---RPGVVDGAISISAVQWL-  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-~~~~~~~D~~~~~~~---~~~~fD~Vis~~~l~~l-  126 (291)
                      +.+|||||||+              +++|+|+.|++.|+++.. .+.++++|+. .+++   ++++||+|+|+.++||+ 
T Consensus        13 g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~V~~~~~l~~~~   77 (176)
T 2ld4_A           13 GQFVAVVWDKS--------------SPVEALKGLVDKLQALTGNEGRVSVENIK-QLLQSAHKESSFDIILSGLVPGSTT   77 (176)
T ss_dssp             TSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGG-GGGGGCCCSSCEEEEEECCSTTCCC
T ss_pred             CCEEEEecCCc--------------eeeeCCHHHHHHHHHhcccCcEEEEechh-cCccccCCCCCEeEEEECChhhhcc
Confidence            78999999996              249999999999998864 4889999984 4565   78899999999999998 


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-------ChHHHHHHHHHHHHcCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-------SVAQRELILGAAMRAGF  181 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-------~~~~~~~i~~~~~~aGF  181 (291)
                      .+           ...++++++++|||||++++.....       .....+.+...+.++||
T Consensus        78 ~~-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           78 LH-----------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CC-----------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             cC-----------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            65           5689999999999999999953211       11135778899999999

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.48  E-value=1.6e-15  Score=132.21  Aligned_cols=96  Identities=17%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||+|||+|.++..++..+..|+|+|+|+.|++.|+++.      ..+.++++|+.+ ++ ..++||+|+++.+++|
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCCSS
T ss_pred             CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCcCC
Confidence            679999999999999999999999999999999999998875      357899999844 33 4679999999999998


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.+.           ...+..++++|+|||.+++.
T Consensus       157 ~~~~-----------~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          157 PDYA-----------TAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             GGGG-----------GSSSBCTTTSCSSCHHHHHH
T ss_pred             cchh-----------hhHHHHHHhhcCCcceeHHH
Confidence            7652           23455788889999987664

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.48  E-value=1.1e-13  Score=123.88  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             CCeEEEEcCCCch----hHHHHHHc------CCeEEEEeCCHHHHHHHHhcC----------------------------
Q 043626           52 PRLLLDIGCGSGL----SGETLSEN------GHQWIGLDISQSMLNIALERE----------------------------   93 (291)
Q Consensus        52 ~~~VLDiGcGsG~----~~~~L~~~------g~~v~gvDis~~ml~~a~~~~----------------------------   93 (291)
                      +.+|||+|||||.    ++..|++.      +..|+|+|||+.||+.|++..                            
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5699999999998    55556654      358999999999999998853                            


Q ss_pred             --------CcceEEEccCCCCCCCC-CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           94 --------VEGDLLLGDMGQGLGLR-PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        94 --------~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                              ..+.|.++|+.+ .+++ .+.||+|+|..++.|+.+         .....++..++++|+|||.+++..
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnvliyf~~---------~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYFDK---------TTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGSCH---------HHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCchHhCCH---------HHHHHHHHHHHHHhCCCcEEEEEe
Confidence                    136788899855 3454 578999999999999843         225789999999999999999843

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.48  E-value=2.8e-14  Score=123.02  Aligned_cols=99  Identities=14%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC-----CCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR-----PGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~-----~~~fD~V  117 (291)
                      +.+|||||||+|.++..+++.   +.+|+++|+|+.|++.|+++..      .+.++++|+.+.++..     .++||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            569999999999999999984   5899999999999999988642      3788999974433322     2789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ++....++..+           ...++..+ ++|+|||++++...
T Consensus       139 ~~d~~~~~~~~-----------~~~~~~~~-~~LkpgG~lv~~~~  171 (221)
T 3u81_A          139 FLDHWKDRYLP-----------DTLLLEKC-GLLRKGTVLLADNV  171 (221)
T ss_dssp             EECSCGGGHHH-----------HHHHHHHT-TCCCTTCEEEESCC
T ss_pred             EEcCCcccchH-----------HHHHHHhc-cccCCCeEEEEeCC
Confidence            99877766533           44677777 99999999998643

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.48  E-value=3.3e-13  Score=124.38  Aligned_cols=131  Identities=15%  Similarity=0.044  Sum_probs=97.9

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      ...+++.+.++.   ..+|||||||+|..+..+++..  ..++++|+ +.++.  +++.      ..+.++.+|+.+  +
T Consensus       173 ~~~~~~~~~~~~---~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~--~  244 (348)
T 3lst_A          173 HLILARAGDFPA---TGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR--E  244 (348)
T ss_dssp             HHHHHHHSCCCS---SEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT--C
T ss_pred             HHHHHHhCCccC---CceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC--C
Confidence            446677776665   6799999999999999999864  68999999 44544  2221      237899999853  3


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC--------------------h
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES--------------------V  166 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~--------------------~  166 (291)
                      ++  +||+|++..++||+++         .....+|++++++|+|||++++...  +..                    .
T Consensus       245 ~p--~~D~v~~~~vlh~~~d---------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~  313 (348)
T 3lst_A          245 VP--HADVHVLKRILHNWGD---------EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQE  313 (348)
T ss_dssp             CC--CCSEEEEESCGGGSCH---------HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCC
T ss_pred             CC--CCcEEEEehhccCCCH---------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcC
Confidence            33  8999999999999865         2246899999999999999998542  111                    0


Q ss_pred             HHHHHHHHHHHHcCCCCcEE
Q 043626          167 AQRELILGAAMRAGFAGGVV  186 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~~~~  186 (291)
                      ...+.+..++.++||....+
T Consensus       314 ~t~~e~~~ll~~aGf~~~~~  333 (348)
T 3lst_A          314 RTAAELEPLFTAAGLRLDRV  333 (348)
T ss_dssp             CBHHHHHHHHHHTTEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEE
Confidence            13557788999999986333

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.47  E-value=1e-13  Score=120.51  Aligned_cols=109  Identities=19%  Similarity=0.249  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ..+...+++.+.+.+   +.+|||||||+|.++..+++.+ ..|+++|+++.+++.|+++.     .++.++.+|+.  .
T Consensus        77 ~~~~~~~~~~l~~~~---~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~  151 (235)
T 1jg1_A           77 PHMVAIMLEIANLKP---GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS--K  151 (235)
T ss_dssp             HHHHHHHHHHHTCCT---TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG--G
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc--c
Confidence            356677788887665   6799999999999999999886 89999999999999998864     24788888873  3


Q ss_pred             CCCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          108 GLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       108 ~~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      +++. +.||+|++..+++++.+                 .+.++|+|||++++.+.+.
T Consensus       152 ~~~~~~~fD~Ii~~~~~~~~~~-----------------~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          152 GFPPKAPYDVIIVTAGAPKIPE-----------------PLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCH-----------------HHHHTEEEEEEEEEEECSS
T ss_pred             CCCCCCCccEEEECCcHHHHHH-----------------HHHHhcCCCcEEEEEEecC
Confidence            3433 35999999999887632                 5789999999999998543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.47  E-value=1.9e-13  Score=117.83  Aligned_cols=108  Identities=24%  Similarity=0.289  Sum_probs=85.9

Q ss_pred             HHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC----------CcceEEE
Q 043626           36 LSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE----------VEGDLLL  100 (291)
Q Consensus        36 ~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~----------~~~~~~~  100 (291)
                      +...+++++.  +.+   +.+|||||||+|..+..+++. +  .+|+++|+|+.+++.++++.          ..+.++.
T Consensus        63 ~~~~~l~~l~~~~~~---~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~  139 (226)
T 1i1n_A           63 MHAYALELLFDQLHE---GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  139 (226)
T ss_dssp             HHHHHHHHTTTTSCT---TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             HHHHHHHHHHhhCCC---CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEE
Confidence            4446677775  333   679999999999999999987 4  69999999999999998753          2578899


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      +|+.. .+...++||+|++..+++++                 +..+.++|+|||++++.+.+.
T Consensus       140 ~d~~~-~~~~~~~fD~i~~~~~~~~~-----------------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          140 GDGRM-GYAEEAPYDAIHVGAAAPVV-----------------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             SCGGG-CCGGGCCEEEEEECSBBSSC-----------------CHHHHHTEEEEEEEEEEESCT
T ss_pred             CCccc-CcccCCCcCEEEECCchHHH-----------------HHHHHHhcCCCcEEEEEEecC
Confidence            99743 33446789999999887665                 347889999999999998654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.47  E-value=2.7e-13  Score=122.62  Aligned_cols=123  Identities=13%  Similarity=0.086  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC---------CcceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE---------VEGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~---------~~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||||||+|.++..+++. + .++++||+|+.+++.|+++.         ..+.++.+|+...++...++||+|++.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  170 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  170 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence            679999999999999999987 3 79999999999999999875         347889998754444446789999986


Q ss_pred             CchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...+|+.        |...  ...++..++++|+|||.++++...  .+......+...+.+. |..
T Consensus       171 ~~~~~~~--------~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~  228 (296)
T 1inl_A          171 STDPTAG--------QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPI  228 (296)
T ss_dssp             C------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSE
T ss_pred             CCCcccC--------chhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCc
Confidence            4433221        1111  268999999999999999998653  3455666777777777 654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.47  E-value=4.9e-13  Score=117.22  Aligned_cols=124  Identities=17%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-------------CCcceEEEccCCCCCC--CCCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-------------EVEGDLLLGDMGQGLG--LRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-------------~~~~~~~~~D~~~~~~--~~~~~f  114 (291)
                      +..|||||||+|.++..++..+  ..|+|||+|+.|++.|+++             ..++.++.+|+...++  +..+++
T Consensus        50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~  129 (246)
T 2vdv_E           50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL  129 (246)
T ss_dssp             CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence            5699999999999999999886  5899999999999988764             2457899999866555  778899


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                      |.|+....-.|....   .+........++..+.++|+|||.+++.+.  .....+.+...+...|
T Consensus       130 d~v~~~~p~p~~k~~---~~~~r~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~~~~~  190 (246)
T 2vdv_E          130 SKMFFCFPDPHFKQR---KHKARIITNTLLSEYAYVLKEGGVVYTITD--VKDLHEWMVKHLEEHP  190 (246)
T ss_dssp             EEEEEESCCCC---------CSSCCCHHHHHHHHHHEEEEEEEEEEES--CHHHHHHHHHHHHHST
T ss_pred             CEEEEECCCcccccc---hhHHhhccHHHHHHHHHHcCCCCEEEEEec--cHHHHHHHHHHHHhCc
Confidence            999866433332110   000000014789999999999999999763  2334455555666665

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.47  E-value=4.1e-13  Score=119.69  Aligned_cols=124  Identities=15%  Similarity=0.156  Sum_probs=99.2

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL  107 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~  107 (291)
                      ...++..+.+.+   +.+|||+|||+|.++..++..   +..++++|+|+.+++.|+++.      ..+.++.+|+.+. 
T Consensus       101 ~~~i~~~~~~~~---~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  176 (277)
T 1o54_A          101 SSFIAMMLDVKE---GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-  176 (277)
T ss_dssp             HHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred             HHHHHHHhCCCC---CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-
Confidence            346677777765   679999999999999999987   479999999999999998874      2478888898554 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                       ++.++||+|+++.     ++           ...++..+.++|+|||.+++....  ..+...+...+.+.||..
T Consensus       177 -~~~~~~D~V~~~~-----~~-----------~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~gf~~  233 (277)
T 1o54_A          177 -FDEKDVDALFLDV-----PD-----------PWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIR  233 (277)
T ss_dssp             -CSCCSEEEEEECC-----SC-----------GGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEE
T ss_pred             -ccCCccCEEEECC-----cC-----------HHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCce
Confidence             4567899999852     22           236788999999999999998742  356777888888899975

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.47  E-value=3.2e-13  Score=123.82  Aligned_cols=125  Identities=15%  Similarity=0.185  Sum_probs=93.7

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC----------------Ccc
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE----------------VEG   96 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~----------------~~~   96 (291)
                      ....+++.+.+.+   +.+|||+|||+|.++..++.. |  ..|+|+|+++.+++.|+++.                ..+
T Consensus        93 ~~~~~l~~l~~~~---g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v  169 (336)
T 2b25_A           93 DINMILSMMDINP---GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  169 (336)
T ss_dssp             HHHHHHHHHTCCT---TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             HHHHHHHhcCCCC---CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce
Confidence            3666777887766   779999999999999999987 5  79999999999999998864                257


Q ss_pred             eEEEccCCCCC-CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHH
Q 043626           97 DLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGA  175 (291)
Q Consensus        97 ~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~  175 (291)
                      .++.+|+.+.. ++..++||+|++.....|                .++..++++|+|||.+++...  ...+...+...
T Consensus       170 ~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~----------------~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~  231 (336)
T 2b25_A          170 DFIHKDISGATEDIKSLTFDAVALDMLNPH----------------VTLPVFYPHLKHGGVCAVYVV--NITQVIELLDG  231 (336)
T ss_dssp             EEEESCTTCCC-------EEEEEECSSSTT----------------TTHHHHGGGEEEEEEEEEEES--SHHHHHHHHHH
T ss_pred             EEEECChHHcccccCCCCeeEEEECCCCHH----------------HHHHHHHHhcCCCcEEEEEeC--CHHHHHHHHHH
Confidence            89999986643 456678999998643222                368899999999999997763  44566666776


Q ss_pred             HHHcCC
Q 043626          176 AMRAGF  181 (291)
Q Consensus       176 ~~~aGF  181 (291)
                      +...++
T Consensus       232 l~~~~~  237 (336)
T 2b25_A          232 IRTCEL  237 (336)
T ss_dssp             HHHHTC
T ss_pred             HHhcCC
Confidence            665443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.47  E-value=1.7e-13  Score=122.03  Aligned_cols=102  Identities=12%  Similarity=0.021  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-C------cceEE--EccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-V------EGDLL--LGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~------~~~~~--~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..+++. ..|+|||+++ |+..+.+.. .      ++.++  ++|+.. ++  +++||+|+|..+
T Consensus        75 g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~V~sd~~  149 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT-LP--VERTDVIMCDVG  149 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SC--CCCCSEEEECCC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH-CC--CCCCcEEEEeCc
Confidence            679999999999999999998 7999999998 643332221 1      46788  889843 44  789999999876


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCc--EEEEEEcC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGA--RAVFQIYP  163 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG--~lv~~~~~  163 (291)
                       ++..+..   .+... ...+|..++++|+|||  .+++.++.
T Consensus       150 -~~~~~~~---~d~~~-~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          150 -ESSPKWS---VESER-TIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             -CCCSCHH---HHHHH-HHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             -ccCCccc---hhHHH-HHHHHHHHHHHhccCCCeEEEEEeCC
Confidence             4332200   00011 1137899999999999  99997764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.46  E-value=2.1e-13  Score=126.01  Aligned_cols=110  Identities=20%  Similarity=0.203  Sum_probs=86.5

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      ..+.+++.+...+   +.+|||||||+|.++..+++.+ .+|+|+|+|+ |++.|+++.      ..+.++.+|+.+ ++
T Consensus        38 y~~~i~~~l~~~~---~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~  112 (348)
T 2y1w_A           38 YQRAILQNHTDFK---DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-VS  112 (348)
T ss_dssp             HHHHHHHTGGGTT---TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT-CC
T ss_pred             HHHHHHhccccCC---cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhh-CC
Confidence            3455666665554   6799999999999999999987 5999999996 888887653      347899999854 44


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      + +++||+|+|..+++|+.+..         +..++..+.++|+|||.+++.
T Consensus       113 ~-~~~~D~Ivs~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          113 L-PEQVDIIISEPMGYMLFNER---------MLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             C-SSCEEEEEECCCBTTBTTTS---------HHHHHHHGGGGEEEEEEEESC
T ss_pred             C-CCceeEEEEeCchhcCChHH---------HHHHHHHHHhhcCCCeEEEEe
Confidence            4 36899999998888775422         456777889999999999864

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.46  E-value=5.6e-13  Score=121.49  Aligned_cols=146  Identities=12%  Similarity=-0.007  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~  104 (291)
                      |...+..+..++...+   +.+|||+|||+|..+..|++.   +..|+|+|+|+.+++.++++.     .++.++++|+.
T Consensus       103 qd~~s~l~~~~l~~~~---g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~  179 (315)
T 1ixk_A          103 QEASSMYPPVALDPKP---GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  179 (315)
T ss_dssp             CCHHHHHHHHHHCCCT---TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             eCHHHHHHHHHhCCCC---CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChh
Confidence            3444555566777665   679999999999999999975   278999999999999998874     25788888874


Q ss_pred             CCCCCCCCcccEEEECCc---hhhh-ccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcCCChH-HHHHH
Q 043626          105 QGLGLRPGVVDGAISISA---VQWL-CNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYPESVA-QRELI  172 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~---l~~l-~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~-~~~~i  172 (291)
                      . ++...++||+|++...   +..+ .+++... ..+.      .....++..++++|+|||++++.+..-++. ....+
T Consensus       180 ~-~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v  258 (315)
T 1ixk_A          180 H-IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI  258 (315)
T ss_dssp             G-GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             h-cccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHH
Confidence            3 3334578999998532   1111 1111110 0111      112688999999999999999987653332 23344


Q ss_pred             HHHHHHcCCC
Q 043626          173 LGAAMRAGFA  182 (291)
Q Consensus       173 ~~~~~~aGF~  182 (291)
                      ...+.+.||.
T Consensus       259 ~~~l~~~~~~  268 (315)
T 1ixk_A          259 QWALDNFDVE  268 (315)
T ss_dssp             HHHHHHSSEE
T ss_pred             HHHHhcCCCE
Confidence            5556667764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.45  E-value=2.1e-13  Score=126.05  Aligned_cols=123  Identities=17%  Similarity=0.049  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      ...++..++.++...+   +..|||+|||+|.++..++..+   ..++|+|+|+.|++.|+++..     .+.++++|+.
T Consensus       188 ~~~la~~l~~~~~~~~---~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~  264 (354)
T 3tma_A          188 TPVLAQALLRLADARP---GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR  264 (354)
T ss_dssp             CHHHHHHHHHHTTCCT---TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred             CHHHHHHHHHHhCCCC---CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence            3456777788877765   6799999999999999999865   899999999999999998753     5789999984


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                       .++...+.||+|+++..+.+.....   .+-......++..+.++|+|||.+++.+.
T Consensus       265 -~~~~~~~~~D~Ii~npPyg~r~~~~---~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          265 -HLPRFFPEVDRILANPPHGLRLGRK---EGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             -GGGGTCCCCSEEEECCCSCC----C---HHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             -hCccccCCCCEEEECCCCcCccCCc---ccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence             4555567799999987654321100   01112247899999999999999999874

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.45  E-value=6.3e-14  Score=118.27  Aligned_cols=108  Identities=9%  Similarity=0.031  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL  107 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~  107 (291)
                      ..+...+...+  ++   +.+|||||||+|.++..++..  +.+|+++|+|+.|++.++++..    ...+...|.... 
T Consensus        37 d~fY~~~~~~l--~~---~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-  110 (200)
T 3fzg_A           37 NDFYTYVFGNI--KH---VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-  110 (200)
T ss_dssp             HHHHHHHHHHS--CC---CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-
T ss_pred             HHHHHHHHhhc--CC---CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-
Confidence            34455556655  33   669999999999999999776  4799999999999999998763    224555666333 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                       ..+++||+|++..++|++.+           .+..+..+++.|+|||.+|-
T Consensus       111 -~~~~~~DvVLa~k~LHlL~~-----------~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          111 -VYKGTYDVVFLLKMLPVLKQ-----------QDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             -HTTSEEEEEEEETCHHHHHH-----------TTCCHHHHHHTCEEEEEEEE
T ss_pred             -CCCCCcChhhHhhHHHhhhh-----------hHHHHHHHHHHhCCCCEEEE
Confidence             45789999999999999944           23455589999999998874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.45  E-value=8.9e-13  Score=120.39  Aligned_cols=133  Identities=21%  Similarity=0.185  Sum_probs=101.8

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      ...+++.+.+.    +.+|||||||+|..+..+++.  +..++++|+ +.+++.|+++.      ..+.++.+|+.+  +
T Consensus       157 ~~~~~~~~~~~----~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~  229 (334)
T 2ip2_A          157 FHEIPRLLDFR----GRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ--E  229 (334)
T ss_dssp             HHHHHHHSCCT----TCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT--C
T ss_pred             HHHHHHhCCCC----CCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC--C
Confidence            44556655443    269999999999999999987  478999999 99999998874      247899999865  3


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CC--Ch------------------
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PE--SV------------------  166 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~--~~------------------  166 (291)
                      ++ +.||+|++..++|++.+         .....++++++++|+|||++++...  +.  .+                  
T Consensus       230 ~~-~~~D~v~~~~vl~~~~~---------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
T 2ip2_A          230 VP-SNGDIYLLSRIIGDLDE---------AASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRH  299 (334)
T ss_dssp             CC-SSCSEEEEESCGGGCCH---------HHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCC
T ss_pred             CC-CCCCEEEEchhccCCCH---------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcC
Confidence            33 68999999999998754         2256899999999999999998642  11  10                  


Q ss_pred             HHHHHHHHHHHHcCCCCcEE
Q 043626          167 AQRELILGAAMRAGFAGGVV  186 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~~~~  186 (291)
                      ...+.+..++.++||....+
T Consensus       300 ~t~~e~~~ll~~aGf~~~~~  319 (334)
T 2ip2_A          300 RTTEEVVDLLGRGGFAVERI  319 (334)
T ss_dssp             CBHHHHHHHHHHTTEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceeEE
Confidence            12456778889999986333

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.45  E-value=1.5e-13  Score=119.02  Aligned_cols=112  Identities=15%  Similarity=0.060  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-------cceEEEc
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-------EGDLLLG  101 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~  101 (291)
                      .+..+...++......+   ..+|||||||+|.++..|++.   +..++++|+|+.|++.|+++..       .+.++.+
T Consensus        40 ~~~~~l~~l~~~~~~~~---~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           40 MTGQLLTTLAATTNGNG---STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS  116 (221)
T ss_dssp             HHHHHHHHHHHHSCCTT---CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             HHHHHHHHHHHhhCCCC---CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence            34444455554443322   459999999999999999984   5899999999999999988652       4788888


Q ss_pred             cCCCCCC-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          102 DMGQGLG-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       102 D~~~~~~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+.+.++ +..++||+|++.....+              ...++..+.++|+|||.+++.
T Consensus       117 da~~~l~~~~~~~fD~V~~d~~~~~--------------~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          117 RPLDVMSRLANDSYQLVFGQVSPMD--------------LKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CHHHHGGGSCTTCEEEEEECCCTTT--------------HHHHHHHHHHHEEEEEEEEET
T ss_pred             CHHHHHHHhcCCCcCeEEEcCcHHH--------------HHHHHHHHHHHcCCCcEEEEe
Confidence            8755443 33689999998654322              457899999999999999984

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.45  E-value=7.3e-13  Score=118.50  Aligned_cols=124  Identities=15%  Similarity=0.047  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC---------CcceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE---------VEGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~---------~~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||||||+|.++..+++. + .++++||+++.+++.|+++.         ..+.++.+|+.+.++...++||+|++.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d  155 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence            679999999999999999987 4 79999999999999999865         247889999755444446799999997


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...++... ..      .-...++..++++|+|||.++++...  .+......+...+.+. |..
T Consensus       156 ~~~~~~~~-~~------l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~  212 (275)
T 1iy9_A          156 STEPVGPA-VN------LFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPI  212 (275)
T ss_dssp             CSSCCSCC-CC------CSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSE
T ss_pred             CCCCCCcc-hh------hhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCC
Confidence            55433211 00      00147899999999999999998643  2355666777777766 764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.45  E-value=2.3e-13  Score=125.02  Aligned_cols=144  Identities=14%  Similarity=-0.006  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhC-CCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCC
Q 043626           35 KLSERALELLA-LPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~-~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~  106 (291)
                      ...+.+.+++. ..+   +.+|||+|||+|.++..++..|..|++||+|+.|++.|+++..       .+.++++|+.+.
T Consensus       139 ~~~~~l~~~~~~~~~---~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~  215 (332)
T 2igt_A          139 VHWEWLKNAVETADR---PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF  215 (332)
T ss_dssp             HHHHHHHHHHHHSSS---CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhcCC---CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH
Confidence            34444555543 222   5699999999999999999998899999999999999988742       278898887443


Q ss_pred             CCC---CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---HHH-HHHHHHHHHc
Q 043626          107 LGL---RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---AQR-ELILGAAMRA  179 (291)
Q Consensus       107 ~~~---~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---~~~-~~i~~~~~~a  179 (291)
                      ++.   ..++||+||++....... ......+-...+..++..+.++|+|||.+++.......   ... ..+...+.++
T Consensus       216 l~~~~~~~~~fD~Ii~dPP~~~~~-~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~  294 (332)
T 2igt_A          216 IQREERRGSTYDIILTDPPKFGRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGA  294 (332)
T ss_dssp             HHHHHHHTCCBSEEEECCCSEEEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTS
T ss_pred             HHHHHhcCCCceEEEECCccccCC-chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence            221   146899999964321110 00000112233678999999999999998876544322   222 2333344466


Q ss_pred             CCC
Q 043626          180 GFA  182 (291)
Q Consensus       180 GF~  182 (291)
                      |+.
T Consensus       295 g~~  297 (332)
T 2igt_A          295 GGV  297 (332)
T ss_dssp             CSE
T ss_pred             CCe
Confidence            664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.45  E-value=3.4e-13  Score=127.75  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHH-------HhcC-------CcceE
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIA-------LERE-------VEGDL   98 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a-------~~~~-------~~~~~   98 (291)
                      .++..+++.+.+.+   +.+|||||||+|.++..++.. + ..|+|||+|+.+++.|       +++.       .++.+
T Consensus       229 ~~v~~ml~~l~l~~---g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~  305 (433)
T 1u2z_A          229 NFLSDVYQQCQLKK---GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  305 (433)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             HHHHHHHHhcCCCC---CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence            45667778887765   789999999999999999986 4 5899999999999888       5542       35678


Q ss_pred             EEccCCC-CCCC--CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           99 LLGDMGQ-GLGL--RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        99 ~~~D~~~-~~~~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +++|... ..++  ..++||+|+++.++ +..+           +..+|.+++++|+|||++++.
T Consensus       306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d-----------~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          306 SLKKSFVDNNRVAELIPQCDVILVNNFL-FDED-----------LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECCTT-CCHH-----------HHHHHHHHHTTCCTTCEEEES
T ss_pred             EEcCccccccccccccCCCCEEEEeCcc-cccc-----------HHHHHHHHHHhCCCCeEEEEe
Confidence            8775322 1122  24789999987665 2222           567889999999999999985

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.45  E-value=3e-13  Score=117.55  Aligned_cols=131  Identities=16%  Similarity=0.095  Sum_probs=98.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCC-cccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPG-VVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~-~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..++..+  ..|+++|+++.+++.|+++..      .+++.++|..+.++  ++ .||+|+...+
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~--~~~~~D~IviaG~   93 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE--ETDQVSVITIAGM   93 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC--GGGCCCEEEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc--cCcCCCEEEEcCC
Confidence            6699999999999999999987  589999999999999998752      37889999755444  34 6999886544


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVL  202 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l  202 (291)
                      -..+             +..++......|+++|+++++-.    .....+..++...||.. .-...  .....++|-++
T Consensus        94 Gg~~-------------i~~Il~~~~~~L~~~~~lVlq~~----~~~~~vr~~L~~~Gf~i-~~e~l--v~e~~~~Yeii  153 (225)
T 3kr9_A           94 GGRL-------------IARILEEGLGKLANVERLILQPN----NREDDLRIWLQDHGFQI-VAESI--LEEAGKFYEIL  153 (225)
T ss_dssp             CHHH-------------HHHHHHHTGGGCTTCCEEEEEES----SCHHHHHHHHHHTTEEE-EEEEE--EEETTEEEEEE
T ss_pred             ChHH-------------HHHHHHHHHHHhCCCCEEEEECC----CCHHHHHHHHHHCCCEE-EEEEE--EEECCEEEEEE
Confidence            3322             57889999999999999999864    24567888899999974 11111  12244666555


Q ss_pred             ee
Q 043626          203 TC  204 (291)
Q Consensus       203 ~~  204 (291)
                      .+
T Consensus       154 ~~  155 (225)
T 3kr9_A          154 VV  155 (225)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.44  E-value=2e-13  Score=118.02  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHc-C-------CeEEEEeCCHHHHHHHHhcC----------C
Q 043626           35 KLSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN-G-------HQWIGLDISQSMLNIALERE----------V   94 (291)
Q Consensus        35 ~~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-------~~v~gvDis~~ml~~a~~~~----------~   94 (291)
                      .+...+++.|.  +.+   +.+|||||||+|.++..+++. +       ..|+++|+++.+++.|+++.          .
T Consensus        69 ~~~~~~~~~l~~~~~~---~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  145 (227)
T 1r18_A           69 HMHAFALEYLRDHLKP---GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  145 (227)
T ss_dssp             HHHHHHHHHTTTTCCT---TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhCCC---CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC
Confidence            44556677774  433   679999999999999999885 3       49999999999999998763          3


Q ss_pred             cceEEEccCCCCCCCCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           95 EGDLLLGDMGQGLGLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        95 ~~~~~~~D~~~~~~~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .+.++.+|+..  +++. ++||+|++..+++|+.                 ..+.+.|+|||++++.+.+
T Consensus       146 ~v~~~~~d~~~--~~~~~~~fD~I~~~~~~~~~~-----------------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          146 QLLIVEGDGRK--GYPPNAPYNAIHVGAAAPDTP-----------------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             SEEEEESCGGG--CCGGGCSEEEEEECSCBSSCC-----------------HHHHHTEEEEEEEEEEESC
T ss_pred             ceEEEECCccc--CCCcCCCccEEEECCchHHHH-----------------HHHHHHhcCCCEEEEEEec
Confidence            57889999855  3333 7899999999988763                 4689999999999999865

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.44  E-value=4.8e-13  Score=122.33  Aligned_cols=122  Identities=19%  Similarity=0.190  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||||||+|.++..+++.  +.+++++|+|+.+++.|+++..         .++++.+|+.+.++..+++||+|+++
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d  196 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  196 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence            679999999999999999987  4799999999999999998754         36788898744333346789999987


Q ss_pred             CchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...++         .|...+  ..++..+.++|+|||.++++...  ........+.+.+.+. |..
T Consensus       197 ~~~p~---------~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~  253 (321)
T 2pt6_A          197 SSDPI---------GPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKK  253 (321)
T ss_dssp             CCCSS---------SGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSE
T ss_pred             CcCCC---------CcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCC
Confidence            53221         111112  68999999999999999998643  2445566666666665 654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=2.5e-13  Score=119.40  Aligned_cols=95  Identities=17%  Similarity=0.066  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC--CCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR--PGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~--~~~fD~Vis~  120 (291)
                      +.+|||||||+|.++..|++.   +..|+++|+|+.+++.|+++..      .+.++.+|+.+.++..  .++||+|++.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d  143 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID  143 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence            679999999999999999987   6899999999999999988752      4789999975433332  3489999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .....              ...++..+.++|+|||++++.
T Consensus       144 ~~~~~--------------~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          144 ADKPN--------------NPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             SCGGG--------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             CchHH--------------HHHHHHHHHHhcCCCeEEEEe
Confidence            54322              457899999999999999986

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.44  E-value=6.8e-13  Score=122.37  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|||||||+|..+..+++.  +.+++++|+ +.|++.|++. ..+.++.+|+.+  +++  .||+|++..++||+.+ 
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~p--~~D~v~~~~~lh~~~d-  261 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT--SIP--NADAVLLKYILHNWTD-  261 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT--CCC--CCSEEEEESCGGGSCH-
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-CCcEEEeccccC--CCC--CccEEEeehhhccCCH-
Confidence            579999999999999999987  478999999 9999988764 458999999855  333  3999999999999865 


Q ss_pred             cccCCchHHHHHHHHHHHHHhccC---CcEEEEEEc--CCCh-----------------------HHHHHHHHHHHHcCC
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLAR---GARAVFQIY--PESV-----------------------AQRELILGAAMRAGF  181 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~Lkp---gG~lv~~~~--~~~~-----------------------~~~~~i~~~~~~aGF  181 (291)
                              .....+|++++++|+|   ||++++...  +...                       ...+.+..++.++||
T Consensus       262 --------~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf  333 (352)
T 1fp2_A          262 --------KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF  333 (352)
T ss_dssp             --------HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred             --------HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence                    2245899999999999   999988632  2211                       113567888999999


Q ss_pred             CC
Q 043626          182 AG  183 (291)
Q Consensus       182 ~~  183 (291)
                      ..
T Consensus       334 ~~  335 (352)
T 1fp2_A          334 QH  335 (352)
T ss_dssp             CE
T ss_pred             Ce
Confidence            86

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.44  E-value=2.8e-13  Score=113.81  Aligned_cols=123  Identities=15%  Similarity=0.068  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C----------CeEEEEeCCHHHHHHHHhcCCcceEE-EccCCCCC-------CCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G----------HQWIGLDISQSMLNIALEREVEGDLL-LGDMGQGL-------GLRPG  112 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g----------~~v~gvDis~~ml~~a~~~~~~~~~~-~~D~~~~~-------~~~~~  112 (291)
                      +.+|||||||+|.++..|++. +          ..++|+|+|+.+      ....+.++ .+|+....       .+..+
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPGR   96 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence            679999999999999999987 3          689999999832      12457788 88874321       13346


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +||+|+|+.++++.................++..++++|+|||.+++.++...  ....+...+... |..
T Consensus        97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~-f~~  164 (196)
T 2nyu_A           97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--QSRRLQRRLTEE-FQN  164 (196)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--GGHHHHHHHHHH-EEE
T ss_pred             CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--cHHHHHHHHHHH-hcc
Confidence            89999997655432110000000011125789999999999999999876442  233444444443 654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.44  E-value=4.2e-13  Score=122.91  Aligned_cols=109  Identities=24%  Similarity=0.301  Sum_probs=83.5

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~  110 (291)
                      ..+++.+...+   +.+|||||||+|.++..+++.| .+|+|+|+| .|++.|+++..      .+.++.+|+. .++++
T Consensus        28 ~ai~~~~~~~~---~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~  102 (328)
T 1g6q_1           28 NAIIQNKDLFK---DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLE-DVHLP  102 (328)
T ss_dssp             HHHHHHHHHHT---TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTT-TSCCS
T ss_pred             HHHHhhHhhcC---CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchh-hccCC
Confidence            33434444444   6799999999999999999987 599999999 59998887642      3789999984 46666


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .++||+|++..+.+++.+..        .+..++..+.++|+|||.++.
T Consensus       103 ~~~~D~Ivs~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          103 FPKVDIIISEWMGYFLLYES--------MMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTC--------CHHHHHHHHHHHEEEEEEEES
T ss_pred             CCcccEEEEeCchhhcccHH--------HHHHHHHHHHhhcCCCeEEEE
Confidence            78999999986655443211        156889999999999999984

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.44  E-value=1.1e-12  Score=114.14  Aligned_cols=124  Identities=18%  Similarity=0.158  Sum_probs=95.1

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLR  110 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~  110 (291)
                      ...+++.+.+.+   +.+|||+|||+|.++..+++.+..++++|+|+.+++.|+++.      ..+.++.+|+.+.. +.
T Consensus        80 ~~~~~~~~~~~~---~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  155 (248)
T 2yvl_A           80 SFYIALKLNLNK---EKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VP  155 (248)
T ss_dssp             HHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CC
T ss_pred             HHHHHHhcCCCC---CCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cC
Confidence            346667776665   679999999999999999988889999999999999998864      34788889985532 24


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .++||+|++...     +           ...++..+.++|+|||++++....  ..+...+...+... |..
T Consensus       156 ~~~~D~v~~~~~-----~-----------~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~-f~~  209 (248)
T 2yvl_A          156 EGIFHAAFVDVR-----E-----------PWHYLEKVHKSLMEGAPVGFLLPT--ANQVIKLLESIENY-FGN  209 (248)
T ss_dssp             TTCBSEEEECSS-----C-----------GGGGHHHHHHHBCTTCEEEEEESS--HHHHHHHHHHSTTT-EEE
T ss_pred             CCcccEEEECCc-----C-----------HHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhh-CCc
Confidence            678999998422     2           236788999999999999998843  34666666665554 543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.43  E-value=9.7e-14  Score=120.36  Aligned_cols=109  Identities=19%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~  106 (291)
                      .....+..++...+   +.+|||||||+|.++..+++.  +..|+++|+|+.+++.|+++.      ..+.++.+|+...
T Consensus        41 ~~~~~l~~~~~~~~---~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  117 (233)
T 2gpy_A           41 LGMESLLHLLKMAA---PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL  117 (233)
T ss_dssp             HHHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred             HHHHHHHHHHhccC---CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence            33444444444444   679999999999999999987  589999999999999998874      2478888888554


Q ss_pred             CCCC--CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          107 LGLR--PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       107 ~~~~--~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++..  +++||+|++..+.+   +           ...++..+.++|+|||++++.
T Consensus       118 ~~~~~~~~~fD~I~~~~~~~---~-----------~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          118 GEKLELYPLFDVLFIDAAKG---Q-----------YRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             HHHHTTSCCEEEEEEEGGGS---C-----------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHhcccCCCccEEEECCCHH---H-----------HHHHHHHHHHHcCCCeEEEEE
Confidence            3433  57899999876543   1           568999999999999999996

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.43  E-value=2.3e-13  Score=125.38  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=91.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGL  109 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~  109 (291)
                      .++.+++.+....   +.+|||||||+|.++..+++.+  ..++|+|+|+.|++.|+++..    .+.++.+|+..   +
T Consensus       184 ~~~~ll~~l~~~~---~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~---~  257 (343)
T 2pjd_A          184 GSQLLLSTLTPHT---KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS---E  257 (343)
T ss_dssp             HHHHHHHHSCTTC---CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT---T
T ss_pred             HHHHHHHhcCcCC---CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc---c
Confidence            3556677775444   5699999999999999999886  599999999999999988652    35778888743   3


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .+++||+|+++.++|+...      ........++..++++|+|||.+++.....
T Consensus       258 ~~~~fD~Iv~~~~~~~g~~------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 VKGRFDMIISNPPFHDGMQ------TSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             CCSCEEEEEECCCCCSSSH------HHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             ccCCeeEEEECCCcccCcc------CCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            3679999999998876211      112236789999999999999999976543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.42  E-value=8.4e-13  Score=115.01  Aligned_cols=132  Identities=16%  Similarity=0.096  Sum_probs=98.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|.++..++..+  ..|+|+|+++.+++.|+++..      .+.+.++|..+.++ +.+.||+|+.....
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~-~~~~~D~IviaGmG  100 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE-EADNIDTITICGMG  100 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGCCCEEEEEEEC
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc-cccccCEEEEeCCc
Confidence            6799999999999999999987  479999999999999998752      37899999855432 22379998865554


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEe
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLT  203 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~  203 (291)
                      ..+             +..++......|+++|+|+++-..    ....+..++...||.- .-...  .....++|-++.
T Consensus       101 g~l-------------I~~IL~~~~~~l~~~~~lIlqp~~----~~~~lr~~L~~~Gf~i-~~E~l--v~e~~~~Yeii~  160 (230)
T 3lec_A          101 GRL-------------IADILNNDIDKLQHVKTLVLQPNN----REDDLRKWLAANDFEI-VAEDI--LTENDKRYEILV  160 (230)
T ss_dssp             HHH-------------HHHHHHHTGGGGTTCCEEEEEESS----CHHHHHHHHHHTTEEE-EEEEE--EEC--CEEEEEE
T ss_pred             hHH-------------HHHHHHHHHHHhCcCCEEEEECCC----ChHHHHHHHHHCCCEE-EEEEE--EEECCEEEEEEE
Confidence            433             678899999999999999998742    3667888999999974 11111  122456775555


Q ss_pred             e
Q 043626          204 C  204 (291)
Q Consensus       204 ~  204 (291)
                      +
T Consensus       161 ~  161 (230)
T 3lec_A          161 V  161 (230)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.42  E-value=1.4e-13  Score=118.50  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC-----CCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR-----PGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~-----~~~fD~V  117 (291)
                      +.+|||||||+|.++..|+..   +.+|+++|+|+.+++.|+++..      .+.++++|+.+.++..     .++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            569999999999999999987   6899999999999999988652      3788998874433211     1789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++......              ...++..+.++|+|||.+++.
T Consensus       145 ~~~~~~~~--------------~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          145 YIDADKAN--------------TDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EECSCGGG--------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCHHH--------------HHHHHHHHHHhcCCCcEEEEe
Confidence            97654221              567899999999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.42  E-value=6.9e-13  Score=118.99  Aligned_cols=121  Identities=18%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC---------------CcceEEEccCCCCCCCCCCccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE---------------VEGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~---------------~~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      +.+|||||||+|.++..+++.+ .++++||+++.+++.|+++.               ..+.++.+|+.+.++. .++||
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD  154 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFD  154 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCee
Confidence            6799999999999999999885 69999999999999999865               2367888886443333 67899


Q ss_pred             EEEECCchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          116 GAISISAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +|++....++-         |...+  ..++..++++|+|||.++++...  ........+.+.+... |..
T Consensus       155 ~Ii~d~~~~~~---------~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~  216 (281)
T 1mjf_A          155 VIIADSTDPVG---------PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDR  216 (281)
T ss_dssp             EEEEECCCCC--------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSE
T ss_pred             EEEECCCCCCC---------cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCc
Confidence            99987553221         11222  68899999999999999997532  2445556666666665 764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.41  E-value=1.6e-12  Score=116.77  Aligned_cols=128  Identities=17%  Similarity=0.154  Sum_probs=94.4

Q ss_pred             HhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCC
Q 043626           43 LLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~  111 (291)
                      ++.++.   +.+|||||||+|..+..+++..  .+++++|+++.+++.|+++..         .+.++.+|+...++...
T Consensus        73 l~~~~~---~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~  149 (283)
T 2i7c_A           73 MTVSKE---PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVT  149 (283)
T ss_dssp             HTTSSS---CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCC
T ss_pred             HhcCCC---CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCC
Confidence            344444   6799999999999999999873  799999999999999998753         36888888754333336


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ++||+|++....++..         ...+  ..+++.+.++|+|||.++++...  ........+...+.+. |..
T Consensus       150 ~~fD~Ii~d~~~~~~~---------~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~  215 (283)
T 2i7c_A          150 NTYDVIIVDSSDPIGP---------AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKK  215 (283)
T ss_dssp             SCEEEEEEECCCTTTG---------GGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSE
T ss_pred             CCceEEEEcCCCCCCc---------chhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCc
Confidence            7899999965443321         1112  58999999999999999998642  2334555566665555 764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.41  E-value=6e-13  Score=121.29  Aligned_cols=125  Identities=16%  Similarity=0.105  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC----------CcceEEEccCCCCCCCCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE----------VEGDLLLGDMGQGLGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~----------~~~~~~~~D~~~~~~~~~~~fD~Vis  119 (291)
                      +.+|||||||+|.++..+++.  +.++++||+++.+++.|+++.          ..+.++.+|+...++...++||+|++
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence            679999999999999999987  479999999999999998864          24688999975444444689999999


Q ss_pred             CCchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEEcC---CChHHHHHHHHHHHHcCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQIYP---ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~~~---~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ....++..      ..|...  ...++..++++|+|||.++++...   .+......+...+... |..
T Consensus       158 d~~~~~~~------~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~  219 (314)
T 1uir_A          158 DLTDPVGE------DNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRY  219 (314)
T ss_dssp             ECCCCBST------TCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSE
T ss_pred             CCCCcccc------cCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCc
Confidence            86654400      011111  268999999999999999997533   2234555666666655 654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.41  E-value=4e-12  Score=111.51  Aligned_cols=148  Identities=10%  Similarity=0.011  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCC-C-CCC---CCcccEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQG-L-GLR---PGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~-~-~~~---~~~fD~Vi  118 (291)
                      +.+|||||||+|.++..++..  +..++|+|+|+.|++.|+++..      .+.++++|+.+. + ++.   +++||+|+
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~  145 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  145 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence            569999999999999888876  5899999999999999988642      278999997542 2 343   26899999


Q ss_pred             ECCchhhhcc-------ccccCCchHHH-----------------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626          119 SISAVQWLCN-------ADKASHEPRLR-----------------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILG  174 (291)
Q Consensus       119 s~~~l~~l~~-------~~~~~~~p~~~-----------------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~  174 (291)
                      ++..+++...       .+...+.|...                 +..++......|+++|.+++......  ....+.+
T Consensus       146 ~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~  223 (254)
T 2h00_A          146 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKC--SLAPLKE  223 (254)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTT--SHHHHHH
T ss_pred             ECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChh--HHHHHHH
Confidence            9976654430       00111112111                 12334445667788887776654322  3466788


Q ss_pred             HHHHcCCCCcEEEeCCCCCCCCcEEEEEe
Q 043626          175 AAMRAGFAGGVVVDYPHSSKSRKEFLVLT  203 (291)
Q Consensus       175 ~~~~aGF~~~~~~~~p~~~~~~~~~l~l~  203 (291)
                      .+.++||....+......  ....|++.+
T Consensus       224 ~l~~~Gf~~v~~~~~~~g--~~~~~~~~w  250 (254)
T 2h00_A          224 ELRIQGVPKVTYTEFCQG--RTMRWALAW  250 (254)
T ss_dssp             HHHHTTCSEEEEEEEEET--TEEEEEEEE
T ss_pred             HHHHcCCCceEEEEEecC--CceEEEEEe
Confidence            899999987444444322  234444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.41  E-value=1e-11  Score=105.27  Aligned_cols=115  Identities=15%  Similarity=0.222  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||+|||+|.++..++..+ ..++|+|+|+.+++.|+++..    .+.++++|+.+ ++   ++||+|+++..+++.
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~---~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FN---SRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CC---CCCSEEEECCCCSSS
T ss_pred             cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cC---CCCCEEEEcCCCccc
Confidence            6799999999999999999987 579999999999999998764    57899999844 33   589999999887765


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...      .   ...++..+.++|  |+.+++.+  .+....+.+...+...||..
T Consensus       126 ~~~------~---~~~~l~~~~~~l--~~~~~~~~--~~~~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          126 RKH------A---DRPFLLKAFEIS--DVVYSIHL--AKPEVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             STT------T---THHHHHHHHHHC--SEEEEEEE--CCHHHHHHHHHHHHHTTEEE
T ss_pred             cCC------c---hHHHHHHHHHhc--CcEEEEEe--CCcCCHHHHHHHHHHCCCeE
Confidence            321      1   346788888888  55544443  23455667778888999864

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.41  E-value=9.6e-13  Score=119.52  Aligned_cols=127  Identities=13%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeC----CHHHHHHHH-hcC--CcceEEEc-cCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDI----SQSMLNIAL-ERE--VEGDLLLG-DMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDi----s~~ml~~a~-~~~--~~~~~~~~-D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|.++..+++. ..|+|||+    ++.+++.+. +..  ..+.++.+ |+.. +  +.++||+|+|..++
T Consensus        83 g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~-l--~~~~fD~V~sd~~~  158 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF-I--PPERCDTLLCDIGE  158 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT-S--CCCCCSEEEECCCC
T ss_pred             CCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccccc-C--CcCCCCEEEECCcc
Confidence            579999999999999999998 68999999    565443221 111  34677877 7733 3  35799999998765


Q ss_pred             h---hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          124 Q---WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       124 ~---~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                      +   |+.+       ... ...+|..+.++|+|||.|++.++.........+...+... |.. +.+..|.+
T Consensus       159 ~~g~~~~d-------~~~-~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~-f~~-v~~~kP~s  220 (305)
T 2p41_A          159 SSPNPTVE-------AGR-TLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK-HGG-ALVRNPLS  220 (305)
T ss_dssp             CCSSHHHH-------HHH-HHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH-HCC-EEECCTTS
T ss_pred             ccCcchhh-------HHH-HHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH-cCC-EEEecCCC
Confidence            3   3221       111 1257888999999999999987654333434444444433 665 55556633

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.40  E-value=2.6e-13  Score=116.66  Aligned_cols=95  Identities=20%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC---C-CCcccEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL---R-PGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~---~-~~~fD~Vi  118 (291)
                      +.+|||||||+|.++..+++.   +.+|+++|+++.+++.|+++..      .+.++.+|+.+.++.   . .++||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            679999999999999999987   6899999999999999987652      378899987443221   1 26799999


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.....+              ...++..+.++|+|||.+++.
T Consensus       139 ~d~~~~~--------------~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          139 IDADKQN--------------NPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             ECSCGGG--------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             EcCCcHH--------------HHHHHHHHHHhcCCCcEEEEe
Confidence            8765432              457899999999999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.40  E-value=1e-13  Score=136.08  Aligned_cols=99  Identities=24%  Similarity=0.416  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC-CCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL-GLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||.|.++..|+++|..|+|||+|+.+|+.|+...     .++++.++++.+.. .+.+++||+|+|..+++|
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh  146 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH  146 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred             CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence            679999999999999999999999999999999999998653     34789999874321 456789999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +.++..        + ..+..+.+.|+++|..++
T Consensus       147 v~~~~~--------~-~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          147 IVHLHG--------I-DEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             HHHHHC--------H-HHHHHHHHHHHHHSSEEE
T ss_pred             CCCHHH--------H-HHHHHHHHHhccccceee
Confidence            976321        1 223346666777776554

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.40  E-value=9.3e-14  Score=129.71  Aligned_cols=123  Identities=18%  Similarity=0.184  Sum_probs=88.3

Q ss_pred             chhhccccccchh-HHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCC------CchhHHHHHHc---CCeEEEEeCCHHHH
Q 043626           17 DTEARKYTSSSRI-IDIQAKLSERALELLALPDDGVPRLLLDIGCG------SGLSGETLSEN---GHQWIGLDISQSML   86 (291)
Q Consensus        17 ~~~a~~Y~~~~~~-~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcG------sG~~~~~L~~~---g~~v~gvDis~~ml   86 (291)
                      +..|..|.+.... ......+.+++++.+..+    +.+|||||||      +|..+..++..   +..|+|+|+|+.|.
T Consensus       185 d~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~~~----~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~  260 (419)
T 3sso_A          185 SELSSRYFTPKFGFLHWFTPHYDRHFRDYRNQ----QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH  260 (419)
T ss_dssp             HHHHHHTTCTTBSSSCBCHHHHHHHHGGGTTS----CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG
T ss_pred             HHHHHHhCCCcccccchHHHHHHHHHHhhcCC----CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh
Confidence            3677778664332 111224455666555432    5799999999      66656555543   58999999999983


Q ss_pred             HHHHhcCCcceEEEccCCCCCCCC------CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           87 NIALEREVEGDLLLGDMGQGLGLR------PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        87 ~~a~~~~~~~~~~~~D~~~~~~~~------~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                          ....++.++++|+ ..++|.      .++||+|+|..+ +++.+           ...+|.+++++|||||++++.
T Consensus       261 ----~~~~rI~fv~GDa-~dlpf~~~l~~~d~sFDlVisdgs-H~~~d-----------~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          261 ----VDELRIRTIQGDQ-NDAEFLDRIARRYGPFDIVIDDGS-HINAH-----------VRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             ----GCBTTEEEEECCT-TCHHHHHHHHHHHCCEEEEEECSC-CCHHH-----------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             ----hcCCCcEEEEecc-cccchhhhhhcccCCccEEEECCc-ccchh-----------HHHHHHHHHHhcCCCeEEEEE
Confidence                2445689999998 445665      689999999754 44433           678999999999999999995

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.40  E-value=1.5e-12  Score=118.63  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC-CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL-GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||||||+|.++..+++.  +.++++||+++.|++.|++++.     .+.++.+|..+.+ .+..++||+||+....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            459999999999999999983  5799999999999999999864     3788999975433 2446899999987543


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-hHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-VAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      ++...       .......|+..++++|+|||+++++..... ......+...+... |....++..
T Consensus       170 ~~~~~-------~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~~  228 (317)
T 3gjy_A          170 GAITP-------QNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIAD  228 (317)
T ss_dssp             TSCCC-------GGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEEC
T ss_pred             ccccc-------hhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEEe
Confidence            32110       000025899999999999999999886432 23344555555555 776444443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.39  E-value=1.1e-12  Score=115.24  Aligned_cols=131  Identities=11%  Similarity=0.004  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCC-cccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPG-VVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~-~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..|+..+  ..|+|+|+++.+++.|+++..      .+.+.++|..+.++  ++ +||+|++..+
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~--~~~~~D~Iviagm   99 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE--KKDAIDTIVIAGM   99 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC--GGGCCCEEEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC--ccccccEEEEeCC
Confidence            6799999999999999999987  479999999999999998742      27899999755432  34 5999887555


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVL  202 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l  202 (291)
                      .-.+             +..++......|+++++|+++-..    ....+..++...||.-   ++.--.....++|-++
T Consensus       100 Gg~l-------------I~~IL~~~~~~L~~~~~lIlq~~~----~~~~lr~~L~~~Gf~i---~~E~lv~e~~k~Yeii  159 (244)
T 3gnl_A          100 GGTL-------------IRTILEEGAAKLAGVTKLILQPNI----AAWQLREWSEQNNWLI---TSEAILREDNKVYEIM  159 (244)
T ss_dssp             CHHH-------------HHHHHHHTGGGGTTCCEEEEEESS----CHHHHHHHHHHHTEEE---EEEEEEEETTEEEEEE
T ss_pred             chHH-------------HHHHHHHHHHHhCCCCEEEEEcCC----ChHHHHHHHHHCCCEE---EEEEEEEECCEEEEEE
Confidence            4333             678899999999999999998632    3567888899999974   1111112244666555


Q ss_pred             ee
Q 043626          203 TC  204 (291)
Q Consensus       203 ~~  204 (291)
                      .+
T Consensus       160 ~~  161 (244)
T 3gnl_A          160 VL  161 (244)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.39  E-value=8.2e-14  Score=118.92  Aligned_cols=94  Identities=19%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..++..   +..++++|+|+.+++.|+++..      .+.++.+|+.+.++..++ ||+|++...
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~  135 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD  135 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence            569999999999999999987   5799999999999999987652      368899987544454456 999998632


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .   .+           ...++..+.++|+|||.+++.
T Consensus       136 ~---~~-----------~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          136 V---FN-----------GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             T---SC-----------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             h---hh-----------hHHHHHHHHHhcCCCeEEEEE
Confidence            2   11           568899999999999999985

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.39  E-value=1.8e-12  Score=117.66  Aligned_cols=124  Identities=15%  Similarity=0.073  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC---------CcceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE---------VEGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~---------~~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||||||+|.++..+++..  .++++||+++.|++.|+++.         ..+.++.+|+.+.++...++||+|++.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d  175 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence            6799999999999999999874  79999999999999999864         247888898744344456899999987


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-C-CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-P-ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-~-~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...++.+.       .......+++.++++|+|||.++++.. + ........+...+.+. |..
T Consensus       176 ~~~~~~~~-------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~  232 (304)
T 2o07_A          176 SSDPMGPA-------ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPV  232 (304)
T ss_dssp             CC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSE
T ss_pred             CCCCCCcc-------hhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCC
Confidence            55432211       011135789999999999999999863 2 2333444555544444 654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.38  E-value=1.1e-11  Score=115.41  Aligned_cols=119  Identities=16%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCC-CCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGL-RPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l  123 (291)
                      +.+||||| |+|.++..++..+  ..|+|+|+|+.|++.|+++..     .+.++.+|+...++. ..++||+|+++.++
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~  251 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE  251 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence            67999999 9999999999876  599999999999999998743     578999999664664 35689999998765


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCc-EEEEEEcC--CChHHHHHHHHHHH-HcCCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGA-RAVFQIYP--ESVAQRELILGAAM-RAGFAG  183 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG-~lv~~~~~--~~~~~~~~i~~~~~-~aGF~~  183 (291)
                      ++.            ....++..++++|+||| .+++.+..  .+......+...+. +.||..
T Consensus       252 ~~~------------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          252 TLE------------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             SHH------------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             chH------------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            542            14789999999999999 45777765  44433355666666 788864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.38  E-value=9.1e-13  Score=126.77  Aligned_cols=111  Identities=21%  Similarity=0.216  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~  107 (291)
                      .+.+.+++.+...+   +.+|||||||+|.++..+++.+ ..|+|+|+|+ |++.|+++.      ..+.++.+|+.+ +
T Consensus       145 ~~~~~il~~l~~~~---~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~-~  219 (480)
T 3b3j_A          145 TYQRAILQNHTDFK---DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-V  219 (480)
T ss_dssp             HHHHHHHHTGGGTT---TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT-C
T ss_pred             HHHHHHHHhhhhcC---CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh-C
Confidence            34455666665444   6799999999999999999986 5999999998 998887753      347899999854 4


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++ +++||+|+|+.+++|+.+.         ....++..+.++|+|||.+++.
T Consensus       220 ~~-~~~fD~Ivs~~~~~~~~~e---------~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          220 SL-PEQVDIIISEPMGYMLFNE---------RMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CC-SSCEEEEECCCCHHHHTCH---------HHHHHHHHGGGGEEEEEEEESC
T ss_pred             cc-CCCeEEEEEeCchHhcCcH---------HHHHHHHHHHHhcCCCCEEEEE
Confidence            44 3689999999887877541         2456677889999999999864

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.38  E-value=2.4e-12  Score=115.68  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~  108 (291)
                      .+.+.+++.+.+.+   +.+|||||||+|.++..|++.+..|+|+|+|+.|++.++++..      .+.++.+|+.. ++
T Consensus        15 ~i~~~i~~~~~~~~---~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~-~~   90 (285)
T 1zq9_A           15 LIINSIIDKAALRP---TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK-TD   90 (285)
T ss_dssp             HHHHHHHHHTCCCT---TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT-SC
T ss_pred             HHHHHHHHhcCCCC---CCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec-cc
Confidence            56778888887765   6799999999999999999999999999999999999988652      47899999843 44


Q ss_pred             CCCCcccEEEECCchhhh
Q 043626          109 LRPGVVDGAISISAVQWL  126 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l  126 (291)
                      +  .+||+|+++..++|.
T Consensus        91 ~--~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           91 L--PFFDTCVANLPYQIS  106 (285)
T ss_dssp             C--CCCSEEEEECCGGGH
T ss_pred             c--hhhcEEEEecCcccc
Confidence            4  379999998777764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.37  E-value=7.1e-13  Score=115.50  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC--------------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG--------------  108 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~--------------  108 (291)
                      +.+|||||||+|.++..++..   +..|+++|+++.+++.|+++..      .+.++.+|+.+.++              
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            679999999999999999987   5799999999999999988742      27888888643222              


Q ss_pred             CCC--CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          109 LRP--GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       109 ~~~--~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |..  ++||+|++......              +..+|..+.++|+|||++++..
T Consensus       141 f~~~~~~fD~I~~~~~~~~--------------~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKEN--------------YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCGGG--------------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCHHH--------------HHHHHHHHHHHcCCCeEEEEEc
Confidence            222  78999998755433              4578999999999999999964

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.37  E-value=4.8e-12  Score=117.03  Aligned_cols=131  Identities=16%  Similarity=0.094  Sum_probs=100.6

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGL  109 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~  109 (291)
                      ...+++.+.+..   ..+|||||||+|.++..|++..  ..++..|. +.+++.|+++..     .++++.+|+.+. + 
T Consensus       168 ~~~~~~~~~~~~---~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~-~-  241 (353)
T 4a6d_A          168 GRSVLTAFDLSV---FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD-P-  241 (353)
T ss_dssp             HHHHHHSSCGGG---CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS-C-
T ss_pred             HHHHHHhcCccc---CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC-C-
Confidence            345566655554   5699999999999999999885  67888897 889999987653     378999998543 3 


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC---h------------------
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES---V------------------  166 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~---~------------------  166 (291)
                       ...+|+|++.++||++++         .....+|+++++.|+|||++++.-.  +++   +                  
T Consensus       242 -~~~~D~~~~~~vlh~~~d---------~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~e  311 (353)
T 4a6d_A          242 -LPEADLYILARVLHDWAD---------GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQE  311 (353)
T ss_dssp             -CCCCSEEEEESSGGGSCH---------HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCC
T ss_pred             -CCCceEEEeeeecccCCH---------HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcC
Confidence             345899999999998865         2357899999999999999998532  111   0                  


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 043626          167 AQRELILGAAMRAGFAG  183 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~  183 (291)
                      ...+++..++.++||+.
T Consensus       312 rt~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          312 RTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             CCHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHCCCce
Confidence            12456788899999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.37  E-value=2.6e-12  Score=118.76  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|||||||+|.++..+++.+  ..++++|+ +.|++.|++ ...+.++.+|+.+  +++  .||+|++..++||+.+ 
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~--~~~--~~D~v~~~~vlh~~~d-  266 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-NENLNFVGGDMFK--SIP--SADAVLLKWVLHDWND-  266 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-CSSEEEEECCTTT--CCC--CCSEEEEESCGGGSCH-
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-CCCcEEEeCccCC--CCC--CceEEEEcccccCCCH-
Confidence            5799999999999999999874  68999999 789887765 3458999999865  443  4999999999999865 


Q ss_pred             cccCCchHHHHHHHHHHHHHhccC---CcEEEEEEc--CCCh------H------------------HHHHHHHHHHHcC
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLAR---GARAVFQIY--PESV------A------------------QRELILGAAMRAG  180 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~Lkp---gG~lv~~~~--~~~~------~------------------~~~~i~~~~~~aG  180 (291)
                              .....++++++++|+|   ||++++...  +...      .                  ..+.+..++.++|
T Consensus       267 --------~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG  338 (358)
T 1zg3_A          267 --------EQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAG  338 (358)
T ss_dssp             --------HHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred             --------HHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcC
Confidence                    2245899999999999   999988532  2111      0                  2346677888999


Q ss_pred             CCCcEE
Q 043626          181 FAGGVV  186 (291)
Q Consensus       181 F~~~~~  186 (291)
                      |....+
T Consensus       339 f~~~~~  344 (358)
T 1zg3_A          339 FSSYKI  344 (358)
T ss_dssp             CCEEEE
T ss_pred             CCeeEE
Confidence            986333

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.37  E-value=2.3e-12  Score=117.53  Aligned_cols=122  Identities=18%  Similarity=0.116  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||||||+|.++..+++.  +.++++||+|+.+++.|+++..         .+.++.+|+...++...++||+|++.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d  188 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  188 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence            679999999999999999987  3799999999999999998763         36788888744343346789999987


Q ss_pred             CchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...++-         |...+  ..++..++++|+|||.++++...  ........+...+... |..
T Consensus       189 ~~~~~~---------~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~  245 (314)
T 2b2c_A          189 SSDPVG---------PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPA  245 (314)
T ss_dssp             CC----------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSE
T ss_pred             CCCCCC---------cchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCc
Confidence            543221         22222  68999999999999999998632  2334455566666555 764

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.37  E-value=1.9e-12  Score=120.71  Aligned_cols=136  Identities=25%  Similarity=0.205  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCC------cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH--QWIGLDISQSMLNIALEREV------EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~  104 (291)
                      ...++..++.+. ..+   +..|||+|||+|.++..++..+.  .++|+|+|+.|++.|+++..      .+.++++|+ 
T Consensus       203 ~~~la~~l~~~~-~~~---~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~-  277 (373)
T 3tm4_A          203 KASIANAMIELA-ELD---GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA-  277 (373)
T ss_dssp             CHHHHHHHHHHH-TCC---SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG-
T ss_pred             cHHHHHHHHHhh-cCC---CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-
Confidence            345666677776 544   67999999999999999999885  99999999999999998752      478999998 


Q ss_pred             CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..+++..++||+|+++..+..-...   ...-..-...++..+.++|  ||.+++.+.  +   ...+...+.+.||..
T Consensus       278 ~~~~~~~~~fD~Ii~npPyg~r~~~---~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--~---~~~~~~~~~~~G~~~  346 (373)
T 3tm4_A          278 TQLSQYVDSVDFAISNLPYGLKIGK---KSMIPDLYMKFFNELAKVL--EKRGVFITT--E---KKAIEEAIAENGFEI  346 (373)
T ss_dssp             GGGGGTCSCEEEEEEECCCC---------CCHHHHHHHHHHHHHHHE--EEEEEEEES--C---HHHHHHHHHHTTEEE
T ss_pred             hhCCcccCCcCEEEECCCCCcccCc---chhHHHHHHHHHHHHHHHc--CCeEEEEEC--C---HHHHHHHHHHcCCEE
Confidence            4467767899999998665432110   0112222478889999999  555555442  2   234456777889875

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=2.6e-12  Score=114.66  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++..+  ..|+|+|+|+.+++.|+++.     .++.++.+|+.+. +. .++||+|+++... 
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-~~~~D~Vi~d~p~-  196 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL-KDVADRVIMGYVH-  196 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC-TTCEEEEEECCCS-
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc-cCCceEEEECCcc-
Confidence            6799999999999999999885  49999999999999998864     3468999998654 54 6789999988554 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---HHHHHHHHHHHH
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---AQRELILGAAMR  178 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---~~~~~i~~~~~~  178 (291)
                         +           ...++..+.+.|+|||.+++...+...   .....+...+.+
T Consensus       197 ---~-----------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~  239 (272)
T 3a27_A          197 ---K-----------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAE  239 (272)
T ss_dssp             ---S-----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHH
T ss_pred             ---c-----------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHH
Confidence               1           446888999999999999998765422   234444444444

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.35  E-value=5.3e-13  Score=117.50  Aligned_cols=95  Identities=16%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC------CCCcccE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL------RPGVVDG  116 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~------~~~~fD~  116 (291)
                      +.+|||||||+|.++..++..   +..++++|+|+.+++.|+++..      .+.++.+|+.+.++.      ..++||+
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            569999999999999999986   6899999999999999988642      368888887543332      1578999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |++.....   +           ...++..+.++|+|||.+++.
T Consensus       160 V~~d~~~~---~-----------~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          160 IFVDADKD---N-----------YLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             EEECSCST---T-----------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEcCchH---H-----------HHHHHHHHHHhCCCCeEEEEe
Confidence            99864321   1           568899999999999999986

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.34  E-value=4.5e-11  Score=113.51  Aligned_cols=131  Identities=15%  Similarity=0.148  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQG  106 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~  106 (291)
                      ....+.+.+++.+....   +.+|||+|||+|.++..|+..+..|+|+|+|+.|++.|+++.     .++.++.+|+.+.
T Consensus       270 ~~e~l~~~~~~~l~~~~---~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~  346 (433)
T 1uwv_A          270 VNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHHHHHTCCT---TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred             HHHHHHHHHHHhhcCCC---CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence            35567888888887655   679999999999999999999999999999999999998765     3578999998664


Q ss_pred             C---CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          107 L---GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       107 ~---~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +   ++..++||+|+++.....              ...++..+. .++|++.++++.   ++..+..-...+.+.||..
T Consensus       347 l~~~~~~~~~fD~Vv~dPPr~g--------------~~~~~~~l~-~~~p~~ivyvsc---~p~tlard~~~l~~~Gy~~  408 (433)
T 1uwv_A          347 VTKQPWAKNGFDKVLLDPARAG--------------AAGVMQQII-KLEPIRIVYVSC---NPATLARDSEALLKAGYTI  408 (433)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTC--------------CHHHHHHHH-HHCCSEEEEEES---CHHHHHHHHHHHHHTTCEE
T ss_pred             hhhhhhhcCCCCEEEECCCCcc--------------HHHHHHHHH-hcCCCeEEEEEC---ChHHHHhhHHHHHHCCcEE
Confidence            3   345678999998633221              123444444 378999988887   5555555556677889975

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.34  E-value=7.3e-12  Score=115.11  Aligned_cols=124  Identities=23%  Similarity=0.176  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCC-CCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLG-LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~-~~~~~fD~Vis  119 (291)
                      +.+|||||||+|.++..|++.  +.+|++||+|+.|++.|+++..         .+.++.+|+.+.++ +..++||+|++
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~  200 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  200 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence            679999999999999999987  3799999999999999998752         47889999744332 34578999999


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .....+-..       .......++..+.++|+|||.++++...  ........+...+. ..|..
T Consensus       201 d~~~p~~~~-------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~-~~F~~  258 (334)
T 1xj5_A          201 DSSDPIGPA-------KELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCR-EIFKG  258 (334)
T ss_dssp             CCCCTTSGG-------GGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHH-HHCSS
T ss_pred             CCCCccCcc-------hhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHH-HhCcc
Confidence            754322110       0000258999999999999999997422  22233334444443 34764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.33  E-value=1e-11  Score=118.51  Aligned_cols=147  Identities=13%  Similarity=0.050  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALERE-----VEGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~  104 (291)
                      |...+..+..++...+   +.+|||+|||+|..+..|++.  + ..++++|+|+.+++.++++.     .++.++++|+.
T Consensus       244 qd~~s~l~~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~  320 (450)
T 2yxl_A          244 QEEASAVASIVLDPKP---GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR  320 (450)
T ss_dssp             CCHHHHHHHHHHCCCT---TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTT
T ss_pred             cCchhHHHHHhcCCCC---cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChh
Confidence            4444555666777665   679999999999999999985  3 79999999999999998764     25788889985


Q ss_pred             CCCC-CCCCcccEEEEC------Cchhhhcccc--ccCCc---hHHHHHHHHHHHHHhccCCcEEEEEEcCCChHH-HHH
Q 043626          105 QGLG-LRPGVVDGAISI------SAVQWLCNAD--KASHE---PRLRLKAFFGSLYRCLARGARAVFQIYPESVAQ-REL  171 (291)
Q Consensus       105 ~~~~-~~~~~fD~Vis~------~~l~~l~~~~--~~~~~---p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~-~~~  171 (291)
                      ...+ +..++||+|++.      .++++.++..  ....+   -......++..+.++|+|||++++.+..-++.+ ...
T Consensus       321 ~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~  400 (450)
T 2yxl_A          321 KAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKN  400 (450)
T ss_dssp             CCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHH
T ss_pred             hcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHH
Confidence            4322 445789999973      1222211100  00000   000115789999999999999998876544332 334


Q ss_pred             HHHHHHHc-CCC
Q 043626          172 ILGAAMRA-GFA  182 (291)
Q Consensus       172 i~~~~~~a-GF~  182 (291)
                      +...+.+. +|.
T Consensus       401 v~~~l~~~~~~~  412 (450)
T 2yxl_A          401 IRWFLNVHPEFK  412 (450)
T ss_dssp             HHHHHHHCSSCE
T ss_pred             HHHHHHhCCCCE
Confidence            44445554 564

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.33  E-value=1.3e-11  Score=117.01  Aligned_cols=142  Identities=14%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQ  105 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~  105 (291)
                      +|...+..+..++...+   +.+|||+|||+|..+..+++.+  ..++|+|+|+.+++.++++..    .+.++++|+..
T Consensus       230 ~qd~~s~~~~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~  306 (429)
T 1sqg_A          230 VQDASAQGCMTWLAPQN---GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY  306 (429)
T ss_dssp             ECCHHHHTHHHHHCCCT---TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC
T ss_pred             eeCHHHHHHHHHcCCCC---cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhh
Confidence            34555666777777665   6799999999999999999875  699999999999999987642    46888999854


Q ss_pred             CCC-CCCCcccEEEECC------chhhhccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcCCChH-HHH
Q 043626          106 GLG-LRPGVVDGAISIS------AVQWLCNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYPESVA-QRE  170 (291)
Q Consensus       106 ~~~-~~~~~fD~Vis~~------~l~~l~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~-~~~  170 (291)
                      ..+ +..++||+|++..      ++++.++  ... ..+.      .....++..+.++|+|||++++.+..-.+. ...
T Consensus       307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~--~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~  384 (429)
T 1sqg_A          307 PSQWCGEQQFDRILLDAPCSATGVIRRHPD--IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSL  384 (429)
T ss_dssp             THHHHTTCCEEEEEEECCCCCGGGTTTCTT--HHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHH
T ss_pred             chhhcccCCCCEEEEeCCCCcccccCCCcc--hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHH
Confidence            221 4457899999742      1221111  000 0000      112588999999999999999987543332 233


Q ss_pred             HHHHHHHH
Q 043626          171 LILGAAMR  178 (291)
Q Consensus       171 ~i~~~~~~  178 (291)
                      .+...+.+
T Consensus       385 ~v~~~l~~  392 (429)
T 1sqg_A          385 QIKAFLQR  392 (429)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            34444444

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.32  E-value=3.5e-12  Score=113.85  Aligned_cols=122  Identities=12%  Similarity=0.079  Sum_probs=84.7

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~  109 (291)
                      ..+..++...+   +.+|||+|||+|..+..|++.  + ..|+|+|+|+.+++.++++.     .++.++.+|+.. ++.
T Consensus        73 ~l~~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~-~~~  148 (274)
T 3ajd_A           73 MIPPIVLNPRE---DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRK-YKD  148 (274)
T ss_dssp             GHHHHHHCCCT---TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHH-HHH
T ss_pred             HHHHHHhCCCC---cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHh-cch
Confidence            34455666655   679999999999999999984  4 79999999999999998764     357888888743 322


Q ss_pred             ----CCCcccEEEECCchh---hhcc-ccc---cCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          110 ----RPGVVDGAISISAVQ---WLCN-ADK---ASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       110 ----~~~~fD~Vis~~~l~---~l~~-~~~---~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                          ..++||+|++.....   .+.. +..   ...+-......++..++++|+|||++++.+..
T Consensus       149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence                257899999873221   1100 000   00000011468899999999999999998754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.32  E-value=2e-13  Score=119.88  Aligned_cols=95  Identities=16%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCC-----CCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLR-----PGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~-----~~~fD~V  117 (291)
                      +.+|||||||+|.++..|++.   +..|+++|+++.|++.|+++.      ..+.++.+|+.+.++..     .++||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            569999999999999999984   579999999999998887764      24789999975433322     4789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++......              ...++..+.++|+|||.+++.
T Consensus       141 ~~d~~~~~--------------~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          141 FIDADKTN--------------YLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEESCGGG--------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCChHH--------------hHHHHHHHHHhcCCCeEEEEE
Confidence            98654221              457899999999999999995

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.31  E-value=3.5e-12  Score=119.70  Aligned_cols=130  Identities=15%  Similarity=0.040  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||+|||+|.++..++..|..|+++|+|+.|++.|+++..    ...+.++|+.+.++...+.||+|+++...  +.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~--f~  292 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT--LV  292 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC--CC
T ss_pred             CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc--CC
Confidence            5699999999999999999999779999999999999988752    24577888754332223459999987432  11


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---HHHHHHHHHHHHcCCCC
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---AQRELILGAAMRAGFAG  183 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---~~~~~i~~~~~~aGF~~  183 (291)
                      ........-...+..++..+.++|+|||.+++.......   .-...+...+.++|...
T Consensus       293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~  351 (393)
T 4dmg_A          293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRL  351 (393)
T ss_dssp             SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeE
Confidence            111111122334678899999999999999976554332   22346667777787764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.31  E-value=7.7e-12  Score=112.67  Aligned_cols=118  Identities=18%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             CCeEEEEcCCC------chhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceE-EEccCCCCCCCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGS------GLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDL-LLGDMGQGLGLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGs------G~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~-~~~D~~~~~~~~~~~fD~Vis~~  121 (291)
                      +.+|||||||+      |.  ..+++.   +..|+|+|+|+.        ...+.+ +++|+.+ +++ .++||+|+|+.
T Consensus        64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~~v~~~i~gD~~~-~~~-~~~fD~Vvsn~  131 (290)
T 2xyq_A           64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VSDADSTLIGDCAT-VHT-ANKWDLIISDM  131 (290)
T ss_dssp             TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BCSSSEEEESCGGG-CCC-SSCEEEEEECC
T ss_pred             CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CCCCEEEEECcccc-CCc-cCcccEEEEcC
Confidence            67999999955      65  444443   379999999997        245889 9999844 444 37899999986


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.++..............+..++..++++|+|||.|++.++.....  ..+...+.+.||..
T Consensus       132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~GF~~  191 (290)
T 2xyq_A          132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFSWWT  191 (290)
T ss_dssp             CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEEEEE
T ss_pred             CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHcCCcE
Confidence            5433110000001111224688999999999999999977554322  36777788888975

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.31  E-value=3.9e-12  Score=119.05  Aligned_cols=129  Identities=9%  Similarity=-0.018  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-----C--cceEEEccCCCCCCC---CCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-----V--EGDLLLGDMGQGLGL---RPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-----~--~~~~~~~D~~~~~~~---~~~~fD~Vis~  120 (291)
                      +.+|||+|||+|.++..++..| ..|+|+|+|+.|++.|+++.     .  ++.++++|+.+.++.   ...+||+|++.
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D  292 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID  292 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence            6799999999999999999987 58999999999999998864     2  578999997543331   24589999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChH---HHHHHHHHHHHcCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVA---QRELILGAAMRAGFA  182 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~---~~~~i~~~~~~aGF~  182 (291)
                      ......  ...........+..++..+.++|+|||.+++...+....   -.+.+...+.++|+.
T Consensus       293 PP~~~~--~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          293 PPSFAR--NKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             CCCC-------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCC--ChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            433110  001122344456788899999999999999998765432   233344445555543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.31  E-value=4.2e-12  Score=118.31  Aligned_cols=97  Identities=21%  Similarity=0.242  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||||||+|.++..+++.| .+|+|||.|+ |++.|++..      ..+.++.+|+.+ +.+ ++.||+|||...-.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~-~~l-pe~~DvivsE~~~~  160 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVET-VEL-PEQVDAIVSEWMGY  160 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTT-CCC-SSCEEEEECCCCBT
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeee-ecC-CccccEEEeecccc
Confidence            5699999999999999999998 6899999996 788777643      237899999844 554 47899999964443


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .+.+..        .+..++....++|+|||.++.
T Consensus       161 ~l~~e~--------~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          161 GLLHES--------MLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TBTTTC--------SHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccc--------hhhhHHHHHHhhCCCCceECC
Confidence            333211        167888888999999999875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.30  E-value=3.2e-11  Score=107.14  Aligned_cols=111  Identities=8%  Similarity=-0.111  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +.+|||||||+|.++..++.++.+++++|+++.|++.|+++..         .+.++.+|....+    ++||+|++...
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~  148 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCLQE  148 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEESSC
T ss_pred             CCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEECCC
Confidence            6799999999999999888777789999999999999988753         3678888874432    78999998621


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~  183 (291)
                           +       |.    .++..+.++|+|||.++++....  .......+...+... |..
T Consensus       149 -----d-------p~----~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~  194 (262)
T 2cmg_A          149 -----P-------DI----HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSV  194 (262)
T ss_dssp             -----C-------CH----HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSE
T ss_pred             -----C-------hH----HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCc
Confidence                 2       22    38999999999999999975332  223444455555443 664

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.29  E-value=2.6e-12  Score=112.18  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-C-----CCCcccE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-L-----RPGVVDG  116 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~-----~~~~fD~  116 (291)
                      +.+|||||||+|.++..+++.   +.+++++|+++.+++.|+++..      .+.++.+|+.+.++ +     ..++||+
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            569999999999999999986   5899999999999999987652      36888888744332 1     2578999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      |++.....   +           ...++..+.++|+|||.+++..
T Consensus       151 I~~d~~~~---~-----------~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          151 GFVDADKP---N-----------YIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEECSCGG---G-----------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCchH---H-----------HHHHHHHHHHhcCCCeEEEEec
Confidence            99763321   1           5688999999999999999863

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.28  E-value=1.3e-12  Score=113.56  Aligned_cols=95  Identities=20%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCC---CCCCC--CcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQG---LGLRP--GVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~---~~~~~--~~fD~V  117 (291)
                      +.+|||||||+|.++..++..   +..++++|+|+.+++.|+++.      ..+.++.+|+.+.   +++..  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            569999999999999999986   479999999999999998764      2378888886432   22223  789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++......              ...++..+.++|+|||.+++.
T Consensus       153 ~~d~~~~~--------------~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          153 FIDADKRN--------------YPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EECSCGGG--------------HHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCHHH--------------HHHHHHHHHHHcCCCeEEEEe
Confidence            98654221              567899999999999999996

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.27  E-value=2.8e-12  Score=110.50  Aligned_cols=95  Identities=18%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC-CC----CCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG-LR----PGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~-~~----~~~fD~V  117 (291)
                      +.+|||||||+|.++..++..   +..++++|+++.+++.|+++.      ..+.++.+|+.+.++ +.    .++||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            679999999999999999986   579999999999999998764      347888888743222 11    1789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ++......              ...++..+.++|+|||.+++.
T Consensus       150 ~~d~~~~~--------------~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          150 VVDADKEN--------------CSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EECSCSTT--------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCHHH--------------HHHHHHHHHHHcCCCeEEEEE
Confidence            98644211              567899999999999999985

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.26  E-value=2.9e-11  Score=109.35  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~  109 (291)
                      .+.+.+++.+.+.+   +.+|||||||+|.++..|++.+..|+|+|+|+.|++.++++.     .++.++.+|+.. +++
T Consensus        29 ~i~~~i~~~~~~~~---~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~-~~~  104 (299)
T 2h1r_A           29 GILDKIIYAAKIKS---SDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIK-TVF  104 (299)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCS-SCC
T ss_pred             HHHHHHHHhcCCCC---cCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhh-CCc
Confidence            56778888887765   679999999999999999999999999999999999998764     357888999843 443


Q ss_pred             CCCcccEEEECCchhhh
Q 043626          110 RPGVVDGAISISAVQWL  126 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l  126 (291)
                        ++||+|+++...++.
T Consensus       105 --~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A          105 --PKFDVCTANIPYKIS  119 (299)
T ss_dssp             --CCCSEEEEECCGGGH
T ss_pred             --ccCCEEEEcCCcccc
Confidence              489999998776653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.26  E-value=4.2e-11  Score=108.15  Aligned_cols=87  Identities=21%  Similarity=0.280  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+++++.+.+.+   +..|||||||+|.++..|++.+..|+|||+++.|++.++++.   .++.++++|+. .++++.
T Consensus        37 ~i~~~Iv~~l~~~~---~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l-~~~~~~  112 (295)
T 3gru_A           37 NFVNKAVESANLTK---DDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDAL-KVDLNK  112 (295)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTT-TSCGGG
T ss_pred             HHHHHHHHhcCCCC---cCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchh-hCCccc
Confidence            57788888888776   679999999999999999999999999999999999998876   56899999984 456666


Q ss_pred             CcccEEEECCchhh
Q 043626          112 GVVDGAISISAVQW  125 (291)
Q Consensus       112 ~~fD~Vis~~~l~~  125 (291)
                      .+||.|+++..+++
T Consensus       113 ~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          113 LDFNKVVANLPYQI  126 (295)
T ss_dssp             SCCSEEEEECCGGG
T ss_pred             CCccEEEEeCcccc
Confidence            78999999866654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.26  E-value=5e-11  Score=114.57  Aligned_cols=127  Identities=16%  Similarity=0.190  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhCCC--CCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC-----CcceEEEcc
Q 043626           33 QAKLSERALELLALP--DDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE-----VEGDLLLGD  102 (291)
Q Consensus        33 q~~~~~~~lelL~~~--~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D  102 (291)
                      |...+..+..+|...  +   +.+|||+|||+|..+..|++.   ...|+++|+|+.+++.++++.     .++.++++|
T Consensus       100 Qd~~s~l~~~~L~~~~~~---g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D  176 (479)
T 2frx_A          100 QEASSMLPVAALFADGNA---PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD  176 (479)
T ss_dssp             CCHHHHHHHHHHTTTTCC---CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             ECHHHHHHHHHhCcccCC---CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            334444455666655  4   679999999999999999986   279999999999999998874     247788888


Q ss_pred             CCCCCCC-CCCcccEEEECC---chhhhc-cccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          103 MGQGLGL-RPGVVDGAISIS---AVQWLC-NADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       103 ~~~~~~~-~~~~fD~Vis~~---~l~~l~-~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      +.. ++. .+++||.|++..   ....+. +++... ..+.      .....+|..+.++|||||++++++..
T Consensus       177 ~~~-~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          177 GRV-FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             STT-HHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHH-hhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            744 332 457899999842   222221 122111 1111      11357899999999999999998764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=8.9e-12  Score=125.00  Aligned_cols=128  Identities=15%  Similarity=0.073  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-------CcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-------VEGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..++..| .+|++||+|+.+++.|+++.       ..+.++++|+.+.++...++||+|++....
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~  619 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT  619 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred             CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence            5699999999999999999887 56999999999999999864       147899999855445456899999987432


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                      .-.........+....+..++..+.++|+|||.+++........   .-...+.+.||.
T Consensus       620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~---~~~~~l~~~g~~  675 (703)
T 3v97_A          620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR---MDLDGLAKLGLK  675 (703)
T ss_dssp             BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC---CCHHHHHHTTEE
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc---cCHHHHHHcCCc
Confidence            10000000112334557889999999999999999988652211   113456677776

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.24  E-value=1.9e-11  Score=114.72  Aligned_cols=130  Identities=17%  Similarity=0.059  Sum_probs=94.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------C-cceEEEccCCCCCCC---CCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------V-EGDLLLGDMGQGLGL---RPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~-~~~~~~~D~~~~~~~---~~~~fD~Vis~  120 (291)
                      +.+|||+|||+|.++..++..| ..|+|+|+|+.+++.|+++.      . ++.++.+|+.+.++.   ..++||+|++.
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d  300 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence            6799999999999999999997 69999999999999998763      2 578999997543221   14689999987


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChH---HHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVA---QRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~---~~~~i~~~~~~aGF~~  183 (291)
                      .......  .....+....+..++..+.++|+|||.+++...+....   -.+.+...+.++|+.-
T Consensus       301 pP~~~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          301 PPKFVEN--KSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             CSSTTTC--SSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCCCCC--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            4321110  01111122336789999999999999999988765432   2445556778888754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.24  E-value=2.6e-11  Score=111.55  Aligned_cols=136  Identities=19%  Similarity=0.165  Sum_probs=95.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-------CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-------HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-------~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+|||+|||+|.++..+++..       ..++|+|+++.+++.|+.+.    ..+.++++|....  ...+.||+|+++
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~--~~~~~fD~Ii~N  208 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN--LLVDPVDVVISD  208 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC--CCCCCEEEEEEE
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc--cccCCccEEEEC
Confidence            5799999999999998888653       68999999999999998764    2478899997542  346789999999


Q ss_pred             Cchhhhcccccc-CCch-----HH-HHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCCcEEEeCC
Q 043626          121 SAVQWLCNADKA-SHEP-----RL-RLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAGGVVVDYP  190 (291)
Q Consensus       121 ~~l~~l~~~~~~-~~~p-----~~-~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~~~~~~~p  190 (291)
                      ..+.++...+.. .+.+     .. ....++..+.+.|+|||++++.+...  ...+...+...+.+.|+.. .++..|
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~-~ii~lp  286 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIE-GIIKLP  286 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEE-EEEECC
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEE-EeeeCC
Confidence            887765432100 0111     00 12368999999999999999887211  1123466777777777643 334544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.23  E-value=5.5e-11  Score=111.65  Aligned_cols=138  Identities=17%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~  111 (291)
                      .+++.+++++....   +.+|||+|||+|.++..+++.   +..++|+|+++.+++.|    ..+.++++|+... . ..
T Consensus        26 ~l~~~~~~~~~~~~---~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~-~-~~   96 (421)
T 2ih2_A           26 EVVDFMVSLAEAPR---GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLW-E-PG   96 (421)
T ss_dssp             HHHHHHHHHCCCCT---TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGC-C-CS
T ss_pred             HHHHHHHHhhccCC---CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhc-C-cc
Confidence            45667777776543   569999999999999999974   47999999999998877    4578999998543 2 24


Q ss_pred             CcccEEEECCchhhhccccc-c--CCchHH---------------HHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHH
Q 043626          112 GVVDGAISISAVQWLCNADK-A--SHEPRL---------------RLKAFFGSLYRCLARGARAVFQIYPE--SVAQREL  171 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~-~--~~~p~~---------------~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~  171 (291)
                      +.||+||++..+........ .  .....+               ....|+..+.++|+|||++++.+...  .......
T Consensus        97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~  176 (421)
T 2ih2_A           97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFAL  176 (421)
T ss_dssp             SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHH
T ss_pred             CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHH
Confidence            78999999854432211000 0  000111               13478999999999999999987432  1124456


Q ss_pred             HHHHHHHcCC
Q 043626          172 ILGAAMRAGF  181 (291)
Q Consensus       172 i~~~~~~aGF  181 (291)
                      +.+.+.+.|+
T Consensus       177 lr~~l~~~~~  186 (421)
T 2ih2_A          177 LREFLAREGK  186 (421)
T ss_dssp             HHHHHHHHSE
T ss_pred             HHHHHHhcCC
Confidence            7778888887

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.22  E-value=7.9e-11  Score=102.77  Aligned_cols=95  Identities=21%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||||||+|.++..+. ....++|+||++.|++.++++.    ....+.++|.... + .+++||+|+++-++|+|.
T Consensus       106 p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~-~-~~~~~DvvLllk~lh~LE  182 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCA-P-PAEAGDLALIFKLLPLLE  182 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTS-C-CCCBCSEEEEESCHHHHH
T ss_pred             CCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccC-C-CCCCcchHHHHHHHHHhh
Confidence            7799999999999999988 5589999999999999998874    4467888998543 3 367999999999999996


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +..+         ...+ .+...|++++.+|-
T Consensus       183 ~q~~---------~~~~-~ll~aL~~~~vvVs  204 (253)
T 3frh_A          183 REQA---------GSAM-ALLQSLNTPRMAVS  204 (253)
T ss_dssp             HHST---------THHH-HHHHHCBCSEEEEE
T ss_pred             hhch---------hhHH-HHHHHhcCCCEEEE
Confidence            6332         1333 77779999987664

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.22  E-value=1.8e-11  Score=114.33  Aligned_cols=130  Identities=15%  Similarity=-0.036  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC---CCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL---RPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~---~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|.++..++..+..|+|+|+|+.+++.|+++.     .++.++++|+.+.++.   ..++||+|++....
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~  289 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA  289 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence            679999999999999999988889999999999999998874     2378999997543221   25689999986332


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHH---HHHHHHHHHHcCCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQ---RELILGAAMRAGFAG  183 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~---~~~i~~~~~~aGF~~  183 (291)
                      ... + ......-...+..++..+.++|+|||.+++...+.....   ...+...+.++|..-
T Consensus       290 ~~~-~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  350 (382)
T 1wxx_A          290 FAK-G-KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  350 (382)
T ss_dssp             SCC-S-TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCC-C-hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            110 0 000111223367899999999999999999887643322   345556677777543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.21  E-value=4.7e-12  Score=121.02  Aligned_cols=132  Identities=14%  Similarity=0.070  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQ  105 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~  105 (291)
                      |...+..+..+|...+   +.+|||+|||+|..+..|++.  + ..|+++|+|+.+++.++++..    .+.++++|+..
T Consensus        86 Qd~ss~l~a~~L~~~~---g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~  162 (464)
T 3m6w_A           86 QEPSAQAVGVLLDPKP---GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRA  162 (464)
T ss_dssp             CCTTTHHHHHHHCCCT---TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHH
T ss_pred             ECHHHHHHHHhcCcCC---CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            3333445556666665   789999999999999999976  2 689999999999999988743    26778888643


Q ss_pred             CCCCCCCcccEEEECCc---hhhh-ccccccCC-ch------HHHHHHHHHHHHHhccCCcEEEEEEcCCChH
Q 043626          106 GLGLRPGVVDGAISISA---VQWL-CNADKASH-EP------RLRLKAFFGSLYRCLARGARAVFQIYPESVA  167 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~---l~~l-~~~~~~~~-~p------~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~  167 (291)
                      ...+.+++||+|++...   ...+ .+++.... .+      ......++..+.++|+|||++++++..-.++
T Consensus       163 l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e  235 (464)
T 3m6w_A          163 LAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE  235 (464)
T ss_dssp             HHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred             hhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh
Confidence            22223679999996422   1111 11111100 01      1113678999999999999999987654433

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.20  E-value=3.1e-11  Score=110.89  Aligned_cols=108  Identities=10%  Similarity=0.061  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||+|||+|.++.. +..+..|+|+|+|+.+++.|+++.      ..+.++++|+.+.+    ++||+|+++.... 
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~~-  269 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVIMNLPKF-  269 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEEECCTTT-
T ss_pred             CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEEECCcHh-
Confidence            67999999999999999 886689999999999999998864      24789999985433    7899999863221 


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc-CCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA-GFA  182 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a-GF~  182 (291)
                                    ...++..+.++|+|||.+++..+...   ...+.+.+..+ ||.
T Consensus       270 --------------~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~~~~~~~  310 (336)
T 2yx1_A          270 --------------AHKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLFEKKCDCE  310 (336)
T ss_dssp             --------------GGGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHHHHHSEEE
T ss_pred             --------------HHHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHHHHhcCCc
Confidence                          22678899999999999988654333   23344445555 554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.20  E-value=2.7e-11  Score=115.61  Aligned_cols=140  Identities=12%  Similarity=0.049  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      |...+..+..+|...+   +.+|||+|||+|..+..|++.   ...|+++|+|+.+++.++++..     ++.++++|+.
T Consensus        90 Qd~ss~l~~~~L~~~~---g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~  166 (456)
T 3m4x_A           90 QEPSAMIVGTAAAAKP---GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPA  166 (456)
T ss_dssp             CCTTTHHHHHHHCCCT---TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHH
T ss_pred             ECHHHHHHHHHcCCCC---CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH
Confidence            3344445566666655   789999999999999999876   2699999999999999988642     4677778863


Q ss_pred             CCCCCCCCcccEEEECCc---hhhhccccccCCchHH--------------HHHHHHHHHHHhccCCcEEEEEEcCCChH
Q 043626          105 QGLGLRPGVVDGAISISA---VQWLCNADKASHEPRL--------------RLKAFFGSLYRCLARGARAVFQIYPESVA  167 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~---l~~l~~~~~~~~~p~~--------------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~  167 (291)
                      ....+.+++||+|++...   ...+.      .+|..              ....++..+.++|+|||++++++..-+++
T Consensus       167 ~l~~~~~~~FD~Il~DaPCSg~G~~r------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e  240 (456)
T 3m4x_A          167 ELVPHFSGFFDRIVVDAPCSGEGMFR------KDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE  240 (456)
T ss_dssp             HHHHHHTTCEEEEEEECCCCCGGGTT------TCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG
T ss_pred             HhhhhccccCCEEEECCCCCCccccc------cCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc
Confidence            322223579999998532   11110      11221              12478999999999999999987654433


Q ss_pred             H-HHHHHHHHHHcCC
Q 043626          168 Q-RELILGAAMRAGF  181 (291)
Q Consensus       168 ~-~~~i~~~~~~aGF  181 (291)
                      + .+.+...+.+.+|
T Consensus       241 Ene~vv~~~l~~~~~  255 (456)
T 3m4x_A          241 ENEEIISWLVENYPV  255 (456)
T ss_dssp             GTHHHHHHHHHHSSE
T ss_pred             cCHHHHHHHHHhCCC
Confidence            3 3334444555554

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.19  E-value=4.2e-11  Score=105.58  Aligned_cols=120  Identities=13%  Similarity=0.085  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||||||+|.++..+....  ..|+++||++.|++.++++.    ....+.+.|+....  +++.||+|+++-++++
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--LDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC--CCSCCSEEEETTCHHH
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC--CCCCcchHHHHHHHHH
Confidence            6799999999999999998773  79999999999999999875    34678888875433  4789999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE----EcCCCh----HHHHHHHHHHHHcCCCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ----IYPESV----AQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~----~~~~~~----~~~~~i~~~~~~aGF~~  183 (291)
                      |.+..+         ...| .+...|+++|.+|--    +.+.+.    .....+.+.+...|...
T Consensus       211 Le~q~k---------g~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~  266 (281)
T 3lcv_B          211 LETQQR---------GSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRI  266 (281)
T ss_dssp             HHHHST---------THHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhhh---------HHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCce
Confidence            966322         2455 899999999988742    211211    23445566666677753

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.18  E-value=2.4e-11  Score=113.95  Aligned_cols=129  Identities=16%  Similarity=0.073  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC---CCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL---RPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~---~~~~fD~Vis~~  121 (291)
                      +.+|||+|||+|.++..++..| ..|+|+|+|+.+++.|+++..      .+.++++|+.+.++.   ..++||+|++..
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp  297 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP  297 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence            6799999999999999999986 599999999999999988652      578999997443221   256899999864


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh--H-HHHHHHHHHHHcCCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV--A-QRELILGAAMRAGFA  182 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~--~-~~~~i~~~~~~aGF~  182 (291)
                      ......  ......-...+..++..+.++|+|||.+++.......  . -...+...+..+|..
T Consensus       298 P~~~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~  359 (396)
T 2as0_A          298 PAFVQH--EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKF  359 (396)
T ss_dssp             CCSCSS--GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred             CCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            321110  0001111233678999999999999999988765432  2 233444556666543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.15  E-value=6.3e-10  Score=105.39  Aligned_cols=107  Identities=18%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGL  109 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~  109 (291)
                      ..+.+.+++   +..   +.+|||+|||+|.++..|++.+..|+|+|+|+.|++.|+++..    .+.++.+|+.+.++ 
T Consensus       279 e~l~~~~~~---~~~---~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-  351 (425)
T 2jjq_A          279 VNLVRKVSE---LVE---GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-  351 (425)
T ss_dssp             HHHHHHHHH---HCC---SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-
T ss_pred             HHHHHHhhc---cCC---CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-
Confidence            345555555   233   5699999999999999999999999999999999999988653    27899999865432 


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                        .+||+|+++.....+             ...++..+. .|+|+|.++++..|
T Consensus       352 --~~fD~Vv~dPPr~g~-------------~~~~~~~l~-~l~p~givyvsc~p  389 (425)
T 2jjq_A          352 --KGFDTVIVDPPRAGL-------------HPRLVKRLN-REKPGVIVYVSCNP  389 (425)
T ss_dssp             --TTCSEEEECCCTTCS-------------CHHHHHHHH-HHCCSEEEEEESCH
T ss_pred             --cCCCEEEEcCCccch-------------HHHHHHHHH-hcCCCcEEEEECCh
Confidence              289999986432111             123455554 48999999998743

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.14  E-value=4.7e-13  Score=117.44  Aligned_cols=82  Identities=16%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+.+++.+.+.+   +.+|||||||+|.++..|++.+.+++|+|+|+.|++.|+++.   ..+.++++|+. .+++..
T Consensus        16 ~~~~~i~~~~~~~~---~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~-~~~~~~   91 (245)
T 1yub_A           16 KVLNQIIKQLNLKE---TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDIL-QFQFPN   91 (245)
T ss_dssp             TTHHHHHHHCCCCS---SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCT-TTTCCC
T ss_pred             HHHHHHHHhcCCCC---CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChh-hcCccc
Confidence            34667788887765   679999999999999999999999999999999999988775   35788999984 456553


Q ss_pred             -CcccEEEECC
Q 043626          112 -GVVDGAISIS  121 (291)
Q Consensus       112 -~~fD~Vis~~  121 (291)
                       ++| .||++.
T Consensus        92 ~~~f-~vv~n~  101 (245)
T 1yub_A           92 KQRY-KIVGNI  101 (245)
T ss_dssp             SSEE-EEEEEC
T ss_pred             CCCc-EEEEeC
Confidence             688 777764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.13  E-value=1.7e-10  Score=103.31  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||+|||+|.++..++..| ..|+++|+|+.+++.++++..      .+.++++|..+..  ..+.||.|+++....
T Consensus       126 g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~--~~~~~D~Vi~~~p~~  203 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENIADRILMGYVVR  203 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEEEEEECCCSS
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--cccCCCEEEECCCCc
Confidence            6799999999999999999888 699999999999999988652      2688899985432  257899999873321


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-CCC---hHHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-PES---VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-~~~---~~~~~~i~~~~~~aGF~~  183 (291)
                                     ...++..+.++|++||.+.+... ++.   ....+.+...+...|+..
T Consensus       204 ---------------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          204 ---------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             ---------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ---------------HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence                           13577788899999999876432 221   234566777888899874

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=5.4e-10  Score=98.81  Aligned_cols=84  Identities=11%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLR-  110 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~-  110 (291)
                      .+.+.+++.+.+.+   +..|||||||+|.++..|++.+.+|+|+|+++.|++.++++.   .++.++++|+.. +++. 
T Consensus        16 ~i~~~iv~~~~~~~---~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~-~~~~~   91 (255)
T 3tqs_A           16 FVLQKIVSAIHPQK---TDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ-FDFSS   91 (255)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT-CCGGG
T ss_pred             HHHHHHHHhcCCCC---cCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh-CCHHH
Confidence            56778888888776   679999999999999999999999999999999999999876   457899999844 4443 


Q ss_pred             ---CCcccEEEECCch
Q 043626          111 ---PGVVDGAISISAV  123 (291)
Q Consensus       111 ---~~~fD~Vis~~~l  123 (291)
                         .++|| ||+|...
T Consensus        92 ~~~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           92 VKTDKPLR-VVGNLPY  106 (255)
T ss_dssp             SCCSSCEE-EEEECCH
T ss_pred             hccCCCeE-EEecCCc
Confidence               35688 7777443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.12  E-value=4.9e-10  Score=98.29  Aligned_cols=85  Identities=12%  Similarity=0.133  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+.+++.+.+.+   +.+|||||||+|.++..|++.+..++|+|+|+.|++.++++..   ++.++++|+. .+++..
T Consensus        17 ~~~~~i~~~~~~~~---~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~-~~~~~~   92 (244)
T 1qam_A           17 HNIDKIMTNIRLNE---HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDIL-QFKFPK   92 (244)
T ss_dssp             HHHHHHHTTCCCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGG-GCCCCS
T ss_pred             HHHHHHHHhCCCCC---CCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHH-hCCccc
Confidence            56777888877665   6799999999999999999999999999999999999998763   5789999984 456653


Q ss_pred             -CcccEEEECCchh
Q 043626          112 -GVVDGAISISAVQ  124 (291)
Q Consensus       112 -~~fD~Vis~~~l~  124 (291)
                       ..| .||++..++
T Consensus        93 ~~~~-~vv~nlPy~  105 (244)
T 1qam_A           93 NQSY-KIFGNIPYN  105 (244)
T ss_dssp             SCCC-EEEEECCGG
T ss_pred             CCCe-EEEEeCCcc
Confidence             355 567765544

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.08  E-value=4.2e-10  Score=100.37  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCCCC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGLRP-  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~~~-  111 (291)
                      .+.+++++.+.+.+   + .|||||||+|.++..|++.+.+|+|+|+++.|++.++++..  ++.++++|+. .+++.. 
T Consensus        34 ~i~~~Iv~~~~~~~---~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l-~~~~~~~  108 (271)
T 3fut_A           34 AHLRRIVEAARPFT---G-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDAL-LYPWEEV  108 (271)
T ss_dssp             HHHHHHHHHHCCCC---S-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGG-GSCGGGS
T ss_pred             HHHHHHHHhcCCCC---C-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChh-hCChhhc
Confidence            56788888888876   7 99999999999999999999999999999999999998865  4789999984 345543 


Q ss_pred             CcccEEEECCch
Q 043626          112 GVVDGAISISAV  123 (291)
Q Consensus       112 ~~fD~Vis~~~l  123 (291)
                      ..+|.||+|...
T Consensus       109 ~~~~~iv~NlPy  120 (271)
T 3fut_A          109 PQGSLLVANLPY  120 (271)
T ss_dssp             CTTEEEEEEECS
T ss_pred             cCccEEEecCcc
Confidence            268999988544

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.07  E-value=2.2e-09  Score=99.95  Aligned_cols=130  Identities=14%  Similarity=0.061  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-------------------CCeEEEEeCC-----------HHHHHHHHhcCC---cceE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-------------------GHQWIGLDIS-----------QSMLNIALEREV---EGDL   98 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-------------------g~~v~gvDis-----------~~ml~~a~~~~~---~~~~   98 (291)
                      +.+|+|+||++|..+..+...                   ...|+..|+.           +.+.+.+.+...   ..-|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            468999999999988777643                   1467888987           555554433221   2345


Q ss_pred             EEccCCCC--CCCCCCcccEEEECCchhhhccccccCC-----------------chH-----------HHHHHHHHHHH
Q 043626           99 LLGDMGQG--LGLRPGVVDGAISISAVQWLCNADKASH-----------------EPR-----------LRLKAFFGSLY  148 (291)
Q Consensus        99 ~~~D~~~~--~~~~~~~fD~Vis~~~l~~l~~~~~~~~-----------------~p~-----------~~l~~~l~~l~  148 (291)
                      +.+..+..  ..|+.++||+|+|+++|||+.+......                 .|.           +++..||+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55654442  3588999999999999999976432211                 122           23567799999


Q ss_pred             HhccCCcEEEEEEcCCChH--------HHHHHHHHHHHcCC
Q 043626          149 RCLARGARAVFQIYPESVA--------QRELILGAAMRAGF  181 (291)
Q Consensus       149 ~~LkpgG~lv~~~~~~~~~--------~~~~i~~~~~~aGF  181 (291)
                      +.|+|||++++.+......        .+......+...|.
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGl  253 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGH  253 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCC
Confidence            9999999999998775443        55555555556665

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.05  E-value=9.3e-10  Score=102.34  Aligned_cols=145  Identities=17%  Similarity=0.199  Sum_probs=85.2

Q ss_pred             hccccccchhH----HHHHHHHHHHHHHhCCCC--CCCCCeEEEEcCCCchhHHHHHH--------c---------CCeE
Q 043626           20 ARKYTSSSRII----DIQAKLSERALELLALPD--DGVPRLLLDIGCGSGLSGETLSE--------N---------GHQW   76 (291)
Q Consensus        20 a~~Y~~~~~~~----~iq~~~~~~~lelL~~~~--~~~~~~VLDiGcGsG~~~~~L~~--------~---------g~~v   76 (291)
                      ...|+.++..+    .....+.+.+++.|....  ...+.+|+|+|||+|..+..+..        .         ...|
T Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v   94 (374)
T 3b5i_A           15 QDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTA   94 (374)
T ss_dssp             -----------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEE
T ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeE
Confidence            34576665533    223456666666665542  11257999999999998887731        1         2567


Q ss_pred             EEEeCCHHHHHHHHhcCCc-----------------ceEEEccCCC--CCCCCCCcccEEEECCchhhhccccccCC---
Q 043626           77 IGLDISQSMLNIALEREVE-----------------GDLLLGDMGQ--GLGLRPGVVDGAISISAVQWLCNADKASH---  134 (291)
Q Consensus        77 ~gvDis~~ml~~a~~~~~~-----------------~~~~~~D~~~--~~~~~~~~fD~Vis~~~l~~l~~~~~~~~---  134 (291)
                      +..|+....-...-...+.                 .-|+.+..+.  .-.|+.++||+|+|+.+|||+.+......   
T Consensus        95 ~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~  174 (374)
T 3b5i_A           95 FFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRR  174 (374)
T ss_dssp             EEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTT
T ss_pred             EecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccc
Confidence            8888766553322221111                 1233333222  23578999999999999999975332110   


Q ss_pred             --------------ch----------HHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          135 --------------EP----------RLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       135 --------------~p----------~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                                    .|          .+++..||+..++.|+|||++++++...
T Consensus       175 ~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          175 SAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             STTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             cccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence                          11          2346778999999999999999988754

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=99.03  E-value=2.4e-09  Score=94.79  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhc---CCcceEEEccCCCCCCCCCCcccEEEECCchh--
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALER---EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQ--  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~---~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~--  124 (291)
                      ...|||||||+|.++..+++. + ..++|+|++..+.......   ..++..+..++ +...+..+.||+|+|..+.+  
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~-dv~~l~~~~~DlVlsD~apnsG  153 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT-DIHRLEPVKCDTLLCDIGESSS  153 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC-CTTTSCCCCCSEEEECCCCCCS
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccc-eehhcCCCCccEEEecCccCcC
Confidence            569999999999999998876 4 5788899885431111110   01344556665 43567788999999987765  


Q ss_pred             --hhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          125 --WLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       125 --~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                        |+..         .+...+|..+.++|+|| |.|++.++..-......+...+.+. |.. +.+.-| +.+
T Consensus       154 ~~~~D~---------~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~-F~~-V~~~KP-aSR  214 (277)
T 3evf_A          154 SSVTEG---------ERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR-FGG-TVIRNP-LSR  214 (277)
T ss_dssp             CHHHHH---------HHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCC-EEECCT-TSC
T ss_pred             chHHHH---------HHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh-cCC-EEEEeC-CCC
Confidence              2211         11223478889999999 9999988762223444555555554 876 666777 544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.02  E-value=1.6e-09  Score=100.12  Aligned_cols=146  Identities=18%  Similarity=0.156  Sum_probs=96.8

Q ss_pred             hhhccccccchhHHHH----HHHHHHHHHHhCCC--CCCCCCeEEEEcCCCchhHHHHHHc------------C------
Q 043626           18 TEARKYTSSSRIIDIQ----AKLSERALELLALP--DDGVPRLLLDIGCGSGLSGETLSEN------------G------   73 (291)
Q Consensus        18 ~~a~~Y~~~~~~~~iq----~~~~~~~lelL~~~--~~~~~~~VLDiGcGsG~~~~~L~~~------------g------   73 (291)
                      +-...|+.++.++...    ..+.+.++..+...  .+ .+.+|+|+||++|..+..+...            +      
T Consensus        13 ~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~-~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe   91 (359)
T 1m6e_X           13 AGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVT-TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPE   91 (359)
T ss_dssp             TTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSS-SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            3445688887654321    22333333332221  11 2678999999999877655432            1      


Q ss_pred             CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCC--CCCCCCCcccEEEECCchhhhccccccCC-----------
Q 043626           74 HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQ--GLGLRPGVVDGAISISAVQWLCNADKASH-----------  134 (291)
Q Consensus        74 ~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~--~~~~~~~~fD~Vis~~~l~~l~~~~~~~~-----------  134 (291)
                      ..|+..|+..+....+-...+.      .-|+.+..+.  ...|+.+++|+|+|+.+|||+.+......           
T Consensus        92 ~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~  171 (359)
T 1m6e_X           92 YQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANT  171 (359)
T ss_dssp             EEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSS
T ss_pred             eEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCC
Confidence            5688999998888877766542      2455554433  24688999999999999999976332111           


Q ss_pred             -----------chHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          135 -----------EPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       135 -----------~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                                 --.+++..||+..++.|+|||++++.+...
T Consensus       172 ~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr  212 (359)
T 1m6e_X          172 CPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             SCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence                       013567889999999999999999988654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.02  E-value=1.1e-09  Score=104.20  Aligned_cols=150  Identities=14%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhcC----C-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---------------GHQWIGLDISQSMLNIALERE----V-   94 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---------------g~~v~gvDis~~ml~~a~~~~----~-   94 (291)
                      .+++.+++++....   +.+|||+|||+|.++..+++.               +..++|+|+++.++..|+.+.    . 
T Consensus       158 ~v~~~mv~~l~~~~---~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          158 PLIQAMVDCINPQM---GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCC---CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            45666777776544   679999999999998887763               368999999999999998753    1 


Q ss_pred             --cceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc----C--CchHHHHHHHHHHHHHhccCCcEEEEEEcCC--
Q 043626           95 --EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA----S--HEPRLRLKAFFGSLYRCLARGARAVFQIYPE--  164 (291)
Q Consensus        95 --~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~----~--~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--  164 (291)
                        .+.+.++|.... +. .+.||+|+++..+......+..    .  .........|+..+.++|+|||++++.+...  
T Consensus       235 ~~~~~i~~gD~l~~-~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L  312 (445)
T 2okc_A          235 TDRSPIVCEDSLEK-EP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVL  312 (445)
T ss_dssp             SSCCSEEECCTTTS-CC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             cCCCCEeeCCCCCC-cc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCccc
Confidence              467889987443 22 3489999999776543221110    0  0000113478999999999999999876211  


Q ss_pred             -ChHHHHHHHHHHH-HcCCCCcEEEeCCC
Q 043626          165 -SVAQRELILGAAM-RAGFAGGVVVDYPH  191 (291)
Q Consensus       165 -~~~~~~~i~~~~~-~aGF~~~~~~~~p~  191 (291)
                       .......+...+. ..++.  .++..|.
T Consensus       313 ~~~~~~~~iR~~L~~~~~l~--~ii~lp~  339 (445)
T 2okc_A          313 FEAGAGETIRKRLLQDFNLH--TILRLPT  339 (445)
T ss_dssp             HCSTHHHHHHHHHHHHEEEE--EEEECCS
T ss_pred             ccCcHHHHHHHHHHhcCcEE--EEEeCCC
Confidence             1113345555443 44343  3455553

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.97  E-value=2.1e-09  Score=100.83  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---------------------------------------
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---------------------------------------   73 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---------------------------------------   73 (291)
                      ...++..++.+....+   +..|||++||||.++..++..+                                       
T Consensus       186 ~e~lAa~ll~l~~~~~---~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          186 KETMAAALVLLTSWHP---DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             CHHHHHHHHHHSCCCT---TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             cHHHHHHHHHHhCCCC---CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            4567778888877765   6799999999999988777543                                       


Q ss_pred             -CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhh-hccccccCCchHHHHHHHHH
Q 043626           74 -HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQW-LCNADKASHEPRLRLKAFFG  145 (291)
Q Consensus        74 -~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~-l~~~~~~~~~p~~~l~~~l~  145 (291)
                       ..++|+|+|+.|++.|+++..      .+.++++|+.+ ++. +.+||+||++..+.. +.        ....+..+..
T Consensus       263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~-~~~-~~~fD~Iv~NPPYg~rl~--------~~~~l~~ly~  332 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVAD-FQT-EDEYGVVVANPPYGERLE--------DEEAVRQLYR  332 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGG-CCC-CCCSCEEEECCCCCCSHH--------HHHHHHHHHH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHh-CCC-CCCCCEEEECCCCccccC--------CchhHHHHHH
Confidence             359999999999999998752      37899999854 443 458999999955421 11        1123556666


Q ss_pred             HHHHhccC--CcEEEEEEc
Q 043626          146 SLYRCLAR--GARAVFQIY  162 (291)
Q Consensus       146 ~l~~~Lkp--gG~lv~~~~  162 (291)
                      .+.+.|++  ||.+++-+.
T Consensus       333 ~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          333 EMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHhcCCCCEEEEEEC
Confidence            66677766  888888764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.96  E-value=1.8e-09  Score=100.94  Aligned_cols=118  Identities=19%  Similarity=0.168  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---------------------------------------
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---------------------------------------   73 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---------------------------------------   73 (291)
                      ...++..++.+....+   +..|||++||||.++..++..+                                       
T Consensus       180 ~e~lAa~ll~~~~~~~---~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKA---GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             CHHHHHHHHHTSCCCT---TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             cHHHHHHHHHhhCCCC---CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            3456777777777665   6799999999999988887553                                       


Q ss_pred             -CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHH
Q 043626           74 -HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGS  146 (291)
Q Consensus        74 -~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~  146 (291)
                       ..|+|+|+++.|++.|+.+..      .+.+.++|+.+ ++. +.+||+||++..+..-.       .....+..+...
T Consensus       257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~-l~~-~~~~D~Iv~NPPyg~rl-------~~~~~l~~ly~~  327 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQ-FKS-EDEFGFIITNPPYGERL-------EDKDSVKQLYKE  327 (385)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGG-CCC-SCBSCEEEECCCCCCSH-------HHHHHHHHHHHH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh-cCc-CCCCcEEEECCCCcCcc-------CCHHHHHHHHHH
Confidence             469999999999999998752      37899999854 443 46899999986653110       112336677777


Q ss_pred             HHHhccC--CcEEEEEEc
Q 043626          147 LYRCLAR--GARAVFQIY  162 (291)
Q Consensus       147 l~~~Lkp--gG~lv~~~~  162 (291)
                      +.+.|++  |+.+++-+.
T Consensus       328 lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          328 LGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHTSBSCEEEEEES
T ss_pred             HHHHHhhCCCCEEEEEEC
Confidence            7778877  888887664

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.94  E-value=6.7e-09  Score=96.43  Aligned_cols=108  Identities=12%  Similarity=0.070  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ...+...+++.+...    +..|||+|||+|.++..|+..+..|+|+|+|+.|++.|+++.     .++.++.+|+.+.+
T Consensus       199 ~~~l~~~~~~~~~~~----~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~  274 (369)
T 3bt7_A          199 NIQMLEWALDVTKGS----KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT  274 (369)
T ss_dssp             HHHHHHHHHHHTTTC----CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH
T ss_pred             HHHHHHHHHHHhhcC----CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH
Confidence            356777888887654    358999999999999999998889999999999999998764     34788988874432


Q ss_pred             C-CCC--------------CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          108 G-LRP--------------GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       108 ~-~~~--------------~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      + +..              .+||+|++...-.                 .+...+.+.|+++|++++..
T Consensus       275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-----------------g~~~~~~~~l~~~g~ivyvs  326 (369)
T 3bt7_A          275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-----------------GLDSETEKMVQAYPRILYIS  326 (369)
T ss_dssp             HHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-----------------CCCHHHHHHHTTSSEEEEEE
T ss_pred             HHHhhccccccccccccccCCCCEEEECcCcc-----------------ccHHHHHHHHhCCCEEEEEE
Confidence            1 111              3799999752211                 12334566667888877654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.94  E-value=4.4e-09  Score=98.31  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---------------------------------------
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---------------------------------------   73 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---------------------------------------   73 (291)
                      ...++..++.+....+   +..|||.+||||.+...++..+                                       
T Consensus       179 ~e~LAaall~l~~~~~---~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          179 KENMAAAIILLSNWFP---DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             CHHHHHHHHHHTTCCT---TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             cHHHHHHHHHHhCCCC---CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            4467777788777765   6799999999999988777543                                       


Q ss_pred             -CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHH
Q 043626           74 -HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGS  146 (291)
Q Consensus        74 -~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~  146 (291)
                       ..++|+|+|+.|++.|+++..      .+.++++|+.+ ++. +.+||+||++..+..-.       .....+..+...
T Consensus       256 ~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~-l~~-~~~fD~Iv~NPPYG~rl-------~~~~~l~~ly~~  326 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQD-FKT-NKINGVLISNPPYGERL-------LDDKAVDILYNE  326 (384)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGG-CCC-CCCSCEEEECCCCTTTT-------SCHHHHHHHHHH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHH-CCc-cCCcCEEEECCchhhcc-------CCHHHHHHHHHH
Confidence             359999999999999998752      26899999854 443 35899999996553211       112236677777


Q ss_pred             HHHhccC--CcEEEEEEc
Q 043626          147 LYRCLAR--GARAVFQIY  162 (291)
Q Consensus       147 l~~~Lkp--gG~lv~~~~  162 (291)
                      +.+.|++  ||.+++-+.
T Consensus       327 lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          327 MGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHTTCTTSEEEEEES
T ss_pred             HHHHHhhCCCcEEEEEEC
Confidence            7778876  898888774

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.94  E-value=7.5e-09  Score=91.11  Aligned_cols=83  Identities=10%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhc-CCcceEEEccCCCCCCCCC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER-EVEGDLLLGDMGQGLGLRP-  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~-~~~~~~~~~D~~~~~~~~~-  111 (291)
                      .+.+++++.+...+   +..|||||||+|.++..|++.+ .+++|+|+++.|++.++++ ..++.++++|+. .++++. 
T Consensus        18 ~i~~~iv~~~~~~~---~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~-~~~~~~~   93 (249)
T 3ftd_A           18 GVLKKIAEELNIEE---GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDAS-KFPFCSL   93 (249)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTT-TCCGGGS
T ss_pred             HHHHHHHHhcCCCC---cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchh-hCChhHc
Confidence            56778888888765   6799999999999999999996 8999999999999999987 124689999984 355432 


Q ss_pred             -CcccEEEECCc
Q 043626          112 -GVVDGAISISA  122 (291)
Q Consensus       112 -~~fD~Vis~~~  122 (291)
                       +.| .|+++..
T Consensus        94 ~~~~-~vv~NlP  104 (249)
T 3ftd_A           94 GKEL-KVVGNLP  104 (249)
T ss_dssp             CSSE-EEEEECC
T ss_pred             cCCc-EEEEECc
Confidence             233 5666533

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.93  E-value=4.9e-09  Score=93.87  Aligned_cols=83  Identities=11%  Similarity=0.061  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCe----EEEEeCCHHHHHHHHhc-CCcceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQ----WIGLDISQSMLNIALER-EVEGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~----v~gvDis~~ml~~a~~~-~~~~~~~~~D~~~~~~~  109 (291)
                      .+.+++++.+.+.+   +..|||||||+|.++..|++.+..    |+|+|+|+.|++.++++ ..++.++++|+. .+++
T Consensus        29 ~i~~~iv~~~~~~~---~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~-~~~~  104 (279)
T 3uzu_A           29 GVIDAIVAAIRPER---GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDAL-TFDF  104 (279)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGG-GCCG
T ss_pred             HHHHHHHHhcCCCC---cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChh-cCCh
Confidence            56778888888776   679999999999999999998777    99999999999999987 345789999984 3554


Q ss_pred             CCC------cccEEEECC
Q 043626          110 RPG------VVDGAISIS  121 (291)
Q Consensus       110 ~~~------~fD~Vis~~  121 (291)
                      ..-      ..+.||+|.
T Consensus       105 ~~~~~~~~~~~~~vv~Nl  122 (279)
T 3uzu_A          105 GSIARPGDEPSLRIIGNL  122 (279)
T ss_dssp             GGGSCSSSSCCEEEEEEC
T ss_pred             hHhcccccCCceEEEEcc
Confidence            321      234677763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.87  E-value=5.7e-09  Score=94.76  Aligned_cols=130  Identities=12%  Similarity=-0.043  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALERE-----VEGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~  104 (291)
                      |...+..++.+|...+   +.+|||+|||+|..+..|++.  + ..|+++|+++.+++.++++.     .++.++.+|+.
T Consensus        87 Qd~~s~l~~~~l~~~~---g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~  163 (309)
T 2b9e_A           87 QDRASCLPAMLLDPPP---GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFL  163 (309)
T ss_dssp             CCTGGGHHHHHHCCCT---TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred             ECHHHHHHHHHhCCCC---CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChH
Confidence            3334445566677665   779999999999999999975  2 79999999999999998764     24788899974


Q ss_pred             CCCCCC--CCcccEEEECCc---hhhh-ccccccC------Cch---HHHHHHHHHHHHHhccCCcEEEEEEcCCCh
Q 043626          105 QGLGLR--PGVVDGAISISA---VQWL-CNADKAS------HEP---RLRLKAFFGSLYRCLARGARAVFQIYPESV  166 (291)
Q Consensus       105 ~~~~~~--~~~fD~Vis~~~---l~~l-~~~~~~~------~~p---~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~  166 (291)
                      ...+..  .++||.|++...   ...+ .+++...      ...   ......++..+.++|+ ||+++..+..-++
T Consensus       164 ~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~  239 (309)
T 2b9e_A          164 AVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ  239 (309)
T ss_dssp             GSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred             hcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence            422211  157999997421   1111 0111100      000   1112456777777786 9999987765433

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.85  E-value=5.3e-09  Score=101.89  Aligned_cols=153  Identities=15%  Similarity=0.140  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--------------------CCeEEEEeCCHHHHHHHHhcC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--------------------GHQWIGLDISQSMLNIALERE-   93 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--------------------g~~v~gvDis~~ml~~a~~~~-   93 (291)
                      .+++.+++++....   +.+|||.|||||.+...+++.                    ...++|+|+++.++..|+.+. 
T Consensus       156 ~iv~~mv~~l~p~~---~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          156 PLIKTIIHLLKPQP---REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC---CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            34555667776544   679999999999988777653                    137999999999999998753 


Q ss_pred             ----Cc-----ceEEEccCCCCCCCCCCcccEEEECCchhhhcccc-ccCC-ch-HHHHHHHHHHHHHhccCCcEEEEEE
Q 043626           94 ----VE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD-KASH-EP-RLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus        94 ----~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~-~~~~-~p-~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                          ..     ..+.++|.....+...+.||+||++..+......+ .... .| ...-..|+..+.+.|+|||++++.+
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~  312 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  312 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence                12     57888886432223457899999997665332211 0000 00 1112478999999999999999876


Q ss_pred             cCC---ChHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          162 YPE---SVAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       162 ~~~---~~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                      ...   .......|...+.+.+.- ..++.+|.
T Consensus       313 p~~~L~~~~~~~~iR~~L~~~~~l-~~ii~Lp~  344 (541)
T 2ar0_A          313 PDNVLFEGGKGTDIRRDLMDKCHL-HTILRLPT  344 (541)
T ss_dssp             EHHHHHCCTHHHHHHHHHHHHEEE-EEEEECCS
T ss_pred             cCcceecCcHHHHHHHHHhhcCCE-EEEEEcCc
Confidence            321   111234566666655432 24555554

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.83  E-value=4.5e-09  Score=98.02  Aligned_cols=94  Identities=14%  Similarity=0.066  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC-------------------C-cceEEEccCCCCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE-------------------V-EGDLLLGDMGQGLGL  109 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~-------------------~-~~~~~~~D~~~~~~~  109 (291)
                      +.+|||+|||+|..+..++.. + ..|+++|+++.+++.++++.                   . ++.++++|+...+..
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            569999999999999999987 4 68999999999999998753                   1 267888887443221


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+.||+|++.. +   ..           ...++..+.++|++||.++++
T Consensus       128 ~~~~fD~I~lDP-~---~~-----------~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          128 RHRYFHFIDLDP-F---GS-----------PMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             STTCEEEEEECC-S---SC-----------CHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEEEeCC-C---CC-----------HHHHHHHHHHhcCCCCEEEEE
Confidence            245799999652 1   11           247888999999999988875

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.83  E-value=1.4e-08  Score=90.01  Aligned_cols=134  Identities=11%  Similarity=0.051  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhc---CCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALER---EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~---~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      ...|||||||+|.+++.+++. + ..++|+|++..+...+...   ..++..+..++ +...+..+.+|+|+|..+.. -
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~-dv~~l~~~~~DvVLSDmApn-s  168 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT-DVFNMEVIPGDTLLCDIGES-S  168 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-CGGGSCCCCCSEEEECCCCC-C
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCc-chhhcCCCCcCEEEecCccC-C
Confidence            669999999999999998865 4 5789999987643322210   01233333333 22345578999999998775 2


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCC--cEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARG--ARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~Lkpg--G~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                      .+..    ....+...+|.-+..+|+||  |.|++.++..-......+...+.+. |.. +.+.-| +.+
T Consensus       169 G~~~----~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~-F~~-V~~~KP-aSR  231 (282)
T 3gcz_A          169 PSIA----VEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLK-HGG-GLVRVP-LSR  231 (282)
T ss_dssp             SCHH----HHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHH-HCC-EEECCT-TSC
T ss_pred             CChH----HHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHh-cCC-EEEEcC-CCc
Confidence            1110    01111223577788999999  9999988763223444555555554 776 666777 544

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.79  E-value=1.8e-09  Score=95.65  Aligned_cols=74  Identities=16%  Similarity=0.083  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCH-------HHHHHHHhcCC------cceEEEccCCCCCC-CCC--Cccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQ-------SMLNIALEREV------EGDLLLGDMGQGLG-LRP--GVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~-------~ml~~a~~~~~------~~~~~~~D~~~~~~-~~~--~~fD  115 (291)
                      +.+|||+|||+|..+..|+..|..|+|+|+|+       .+++.|+++..      .+.++++|+.+.++ +..  ++||
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD  163 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD  163 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred             cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence            56999999999999999999999999999999       99999987642      27899999854333 333  7899


Q ss_pred             EEEECCchhh
Q 043626          116 GAISISAVQW  125 (291)
Q Consensus       116 ~Vis~~~l~~  125 (291)
                      +|+++..+++
T Consensus       164 ~V~~dP~~~~  173 (258)
T 2r6z_A          164 IVYLDPMYPE  173 (258)
T ss_dssp             EEEECCCC--
T ss_pred             EEEECCCCCC
Confidence            9999877765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.79  E-value=7.1e-09  Score=91.46  Aligned_cols=82  Identities=7%  Similarity=0.046  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCe--EEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQ--WIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~--v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~  109 (291)
                      .+.+++++.+.+.+   +..|||||||+|.++. +. .+..  |+|+|+++.|++.++++..   ++.++++|+.. +++
T Consensus         8 ~i~~~iv~~~~~~~---~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~-~~~   81 (252)
T 1qyr_A            8 FVIDSIVSAINPQK---GQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT-FNF   81 (252)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG-CCH
T ss_pred             HHHHHHHHhcCCCC---cCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh-CCH
Confidence            46777888887765   6799999999999999 65 4666  9999999999999998764   57899999843 444


Q ss_pred             CC-----CcccEEEECCc
Q 043626          110 RP-----GVVDGAISISA  122 (291)
Q Consensus       110 ~~-----~~fD~Vis~~~  122 (291)
                      ..     +..|.||+|..
T Consensus        82 ~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           82 GELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             HHHHHHHTSCEEEEEECC
T ss_pred             HHhhcccCCceEEEECCC
Confidence            22     23468888744

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.78  E-value=5.2e-09  Score=94.67  Aligned_cols=81  Identities=26%  Similarity=0.382  Sum_probs=65.5

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCC-
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLG-  108 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~-  108 (291)
                      +.+.+++.|.+.+   +..|||+|||+|..+..+++.  +..|+|+|+|+.|++.|+++..    .+.++++|+.. ++ 
T Consensus        14 Ll~e~l~~L~~~~---g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~-l~~   89 (301)
T 1m6y_A           14 MVREVIEFLKPED---EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE-ADF   89 (301)
T ss_dssp             THHHHHHHHCCCT---TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG-HHH
T ss_pred             HHHHHHHhcCCCC---CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH-HHH
Confidence            5667788888765   679999999999999999987  4899999999999999998763    47899999743 32 


Q ss_pred             -C---CCCcccEEEEC
Q 043626          109 -L---RPGVVDGAISI  120 (291)
Q Consensus       109 -~---~~~~fD~Vis~  120 (291)
                       +   ..++||+|++.
T Consensus        90 ~l~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           90 LLKTLGIEKVDGILMD  105 (301)
T ss_dssp             HHHHTTCSCEEEEEEE
T ss_pred             HHHhcCCCCCCEEEEc
Confidence             1   11589999974

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.74  E-value=4.5e-07  Score=81.40  Aligned_cols=124  Identities=16%  Similarity=0.083  Sum_probs=92.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----------cceEEEccCCCCCCCCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----------EGDLLLGDMGQGLGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~~~~~~~~~~fD~Vis  119 (291)
                      +.+||-||-|.|.....+++..  ..++.|||++.+++.|++.++          .+.++.+|....+....++||+||+
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~  163 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS  163 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence            6799999999999999998873  799999999999999987652          3688999987777666789999997


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      -..-..-+.  ....     -..|++.++++|+|||+++.+...  .+......+...+.+. |..
T Consensus       164 D~~dp~~~~--~~L~-----t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~  221 (294)
T 3o4f_A          164 DCTDPIGPG--ESLF-----TSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSD  221 (294)
T ss_dssp             SCCCCCCTT--CCSS-----CCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH-CSE
T ss_pred             eCCCcCCCc--hhhc-----CHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh-CCc
Confidence            643211100  0000     247999999999999999997532  2344555566666665 653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.72  E-value=2e-08  Score=94.03  Aligned_cols=95  Identities=17%  Similarity=-0.002  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCC-----c--ceEEEccCCCCCC-CCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREV-----E--GDLLLGDMGQGLG-LRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~-----~--~~~~~~D~~~~~~-~~~~~fD~Vis~  120 (291)
                      +.+|||++||+|.++..++..  | ..|+++|+++.+++.++++..     +  +.++.+|+...+. ...+.||+|++.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            569999999999999999884  5 689999999999999988652     3  6788888744332 224689999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      . .   ..           ...++..+.++|++||.++++.
T Consensus       133 P-~---g~-----------~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          133 P-F---GT-----------PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             C-S---SC-----------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-C---cC-----------HHHHHHHHHHHhCCCCEEEEEe
Confidence            4 1   11           2368889999999999888853

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.72  E-value=2e-07  Score=83.23  Aligned_cols=134  Identities=13%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHh--c-CCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALE--R-EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~--~-~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +..||||||++|.++..+++. + ..|+|+|+...+......  . ..++..+..++ +...+.++.+|+|+|..+.. -
T Consensus        82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~-di~~l~~~~~DlVlsD~APn-s  159 (300)
T 3eld_A           82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS-NVFTMPTEPSDTLLCDIGES-S  159 (300)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC-CTTTSCCCCCSEEEECCCCC-C
T ss_pred             CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCc-eeeecCCCCcCEEeecCcCC-C
Confidence            779999999999999999986 4 578999997643211100  0 01222233332 22345578999999987765 2


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCC-cEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                      .+..    ....+...+|.-+..+|+|| |.|++.++..-......+...+.+. |.. +.+.-| +.+
T Consensus       160 G~~~----~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~-F~~-V~~~KP-aSR  221 (300)
T 3eld_A          160 SNPL----VERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLR-FGG-GIVRVP-FSR  221 (300)
T ss_dssp             SSHH----HHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHH-HCC-EEECCT-TSC
T ss_pred             CCHH----HHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHh-CCc-EEEEeC-CCC
Confidence            1100    01111234477888999999 9999988762233444555555544 776 666777 544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.72  E-value=3.9e-08  Score=95.78  Aligned_cols=152  Identities=13%  Similarity=0.004  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-----------------CCeEEEEeCCHHHHHHHHhcCC---
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-----------------GHQWIGLDISQSMLNIALEREV---   94 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-----------------g~~v~gvDis~~ml~~a~~~~~---   94 (291)
                      .+++.+++++...    ..+|||.+||||.+...+++.                 ...++|+|+++.++.+|+.+..   
T Consensus       232 ~Vv~lmv~ll~p~----~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          232 SIVTLIVEMLEPY----KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             HHHHHHHHHHCCC----SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC----CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            4566677777544    349999999999987766432                 3579999999999999987641   


Q ss_pred             -c--ceEEEccCCCCCCCCCCcccEEEECCchhh---hccc---ccc---C--------CchH-HHHHHHHHHHHHhccC
Q 043626           95 -E--GDLLLGDMGQGLGLRPGVVDGAISISAVQW---LCNA---DKA---S--------HEPR-LRLKAFFGSLYRCLAR  153 (291)
Q Consensus        95 -~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~---l~~~---~~~---~--------~~p~-~~l~~~l~~l~~~Lkp  153 (291)
                       .  +.+.++|......+....||+||+|..+..   -.+.   +..   .        ..|. ..-..|+..+.+.|+|
T Consensus       308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  387 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP  387 (544)
T ss_dssp             CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred             CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence             1  222666654333345678999999966542   1100   000   0        0010 1123699999999999


Q ss_pred             CcEEEEEEcCC---Ch-HHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          154 GARAVFQIYPE---SV-AQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       154 gG~lv~~~~~~---~~-~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                      ||++++.+...   .. .....+.+.+.+.+.-. .++..|.
T Consensus       388 gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~-aII~LP~  428 (544)
T 3khk_A          388 TGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVE-CMVALPG  428 (544)
T ss_dssp             EEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEE-EEEECCT
T ss_pred             CceEEEEecchhhhcCcchHHHHHHHHHhCCcHh-EEEECCC
Confidence            99998876321   11 23456777777776544 5666664

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.71  E-value=1.7e-07  Score=91.25  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=98.8

Q ss_pred             HHHHHHHHhCC---CCCCCCCeEEEEcCCCchhHHHHHHc-----CCeEEEEeCCHHHHHHHHhcC-------CcceEEE
Q 043626           36 LSERALELLAL---PDDGVPRLLLDIGCGSGLSGETLSEN-----GHQWIGLDISQSMLNIALERE-------VEGDLLL  100 (291)
Q Consensus        36 ~~~~~lelL~~---~~~~~~~~VLDiGcGsG~~~~~L~~~-----g~~v~gvDis~~ml~~a~~~~-------~~~~~~~  100 (291)
                      +++.+++++..   +.  .+.+|||.+||||.+...+++.     ...++|+|+++.++..|+.+.       ....+.+
T Consensus       205 Vv~lmv~ll~~~~~~~--~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~  282 (542)
T 3lkd_A          205 VAKLMTQIAFLGREDK--QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN  282 (542)
T ss_dssp             HHHHHHHHHHTTCTTC--TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             HHHHHHHHHhcccCCC--CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe
Confidence            44455555542   22  2679999999999988777665     378999999999999998753       1346888


Q ss_pred             ccCCCC-CC-CCCCcccEEEECCchh--hhccc----ccc----C-CchH-HHHHHHHHHHHHhcc-CCcEEEEEEcCC-
Q 043626          101 GDMGQG-LG-LRPGVVDGAISISAVQ--WLCNA----DKA----S-HEPR-LRLKAFFGSLYRCLA-RGARAVFQIYPE-  164 (291)
Q Consensus       101 ~D~~~~-~~-~~~~~fD~Vis~~~l~--~l~~~----~~~----~-~~p~-~~l~~~l~~l~~~Lk-pgG~lv~~~~~~-  164 (291)
                      +|.... .| +....||+||+|..+.  |-.+.    +..    . ..|. ..-..|+..+.+.|+ +||++++.+... 
T Consensus       283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~  362 (542)
T 3lkd_A          283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV  362 (542)
T ss_dssp             SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH
T ss_pred             cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH
Confidence            886443 12 4467899999996653  21000    000    0 0000 011368999999999 999998876322 


Q ss_pred             --ChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          165 --SVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       165 --~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                        .......+...+.+.+.-. .++..|..
T Consensus       363 Lf~~~~~~~iRk~Lle~~~l~-~II~LP~~  391 (542)
T 3lkd_A          363 LFRGNAEGTIRKALLEEGAID-TVIGLPAN  391 (542)
T ss_dssp             HHCCTHHHHHHHHHHHTTCEE-EEEECCSS
T ss_pred             hhCCchhHHHHHHHHhCCcee-EEEEcccc
Confidence              1112456777777776544 56666643

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.65  E-value=1.8e-08  Score=89.12  Aligned_cols=85  Identities=11%  Similarity=-0.027  Sum_probs=64.4

Q ss_pred             HHHHHHhCCCCCCCC--CeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc-------------C-CcceEEEc
Q 043626           38 ERALELLALPDDGVP--RLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER-------------E-VEGDLLLG  101 (291)
Q Consensus        38 ~~~lelL~~~~~~~~--~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~-------------~-~~~~~~~~  101 (291)
                      +.+++.+.+.+   +  .+|||+|||+|..+..++..|..|++||+++.+...++++             . ..+.++++
T Consensus        76 e~l~~al~l~~---g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~  152 (258)
T 2oyr_A           76 EAVAKAVGIKG---DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (258)
T ss_dssp             SHHHHHTTCBT---TBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHHHhcccC---CCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence            45666776654   4  7999999999999999999998999999999764444332             1 24789999


Q ss_pred             cCCCCCCCCCCcccEEEECCchhh
Q 043626          102 DMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus       102 D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      |+.+.++....+||+|++...+.+
T Consensus       153 D~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          153 SSLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             CHHHHSTTCSSCCSEEEECCCCCC
T ss_pred             CHHHHHHhCcccCCEEEEcCCCCC
Confidence            975544433347999999877654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.64  E-value=1e-07  Score=95.56  Aligned_cols=119  Identities=17%  Similarity=0.122  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---------------------------------------
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---------------------------------------   73 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---------------------------------------   73 (291)
                      ...++..++.+....+   +..|||.+||||.+...++..+                                       
T Consensus       175 ~e~LAa~ll~~~~~~~---~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          175 KETLAAAIVMRSGWQP---GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             CHHHHHHHHHHTTCCT---TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCC---CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            4467777888877665   6799999999999987766431                                       


Q ss_pred             -----CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC-CCCCCcccEEEECCchhh-hccccccCCchHHHH
Q 043626           74 -----HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL-GLRPGVVDGAISISAVQW-LCNADKASHEPRLRL  140 (291)
Q Consensus        74 -----~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~-l~~~~~~~~~p~~~l  140 (291)
                           ..++|+|+++.|++.|+.+..      .+.+.++|+.+.. ++..++||+||+|..+.. +.+     ...-..+
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~-----~~~l~~l  326 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDS-----EPALIAL  326 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---C-----CHHHHHH
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccc-----hhHHHHH
Confidence                 479999999999999998753      2688999985422 333448999999965431 110     0111223


Q ss_pred             HHHHHHHHHhccCCcEEEE
Q 043626          141 KAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       141 ~~~l~~l~~~LkpgG~lv~  159 (291)
                      ...+..+.+.+.|||.+++
T Consensus       327 y~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          327 HSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHhhCCCCeEEE
Confidence            4444555555668999888

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.63  E-value=1.2e-08  Score=95.76  Aligned_cols=111  Identities=18%  Similarity=0.044  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCC-CCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGL-RPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l  123 (291)
                      +.+|||+|||+|..+..|+..+.+|+|||+|+.|++.|+++..       ++.++++|+.+.++. ..++||+|++....
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPr  173 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPAR  173 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCCC
Confidence            5699999999999999999999999999999999999988742       478999998554332 23589999987443


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHH-hccCCcEEEEEEcCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYR-CLARGARAVFQIYPES  165 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~-~LkpgG~lv~~~~~~~  165 (291)
                      ..-  .....+.+.. +.--+..+.. ++..+..+++...|.-
T Consensus       174 r~~--~~grv~~led-~~P~l~~~~~~l~~~~~~~~vK~sP~l  213 (410)
T 3ll7_A          174 RSG--ADKRVYAIAD-CEPDLIPLATELLPFCSSILAKLSPMI  213 (410)
T ss_dssp             C-------CCCCGGG-EESCHHHHHHHHGGGSSEEEEEECTTS
T ss_pred             cCC--CCceEEehhh-cCCCHHHHHHHHHhhCCcEEEEcCCCC
Confidence            220  0001111110 0111233444 3445567778886654

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.57  E-value=2.1e-07  Score=93.32  Aligned_cols=139  Identities=12%  Similarity=-0.053  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-----CeEEEEeCCHHHHHHH--HhcCCc---------ceEEEccCCCCCCCCCCccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-----HQWIGLDISQSMLNIA--LEREVE---------GDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-----~~v~gvDis~~ml~~a--~~~~~~---------~~~~~~D~~~~~~~~~~~fD  115 (291)
                      +.+|||.|||+|.+...++...     ..++|+|+++.++..|  +.+...         ..+...|+....+...+.||
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD  401 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS  401 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence            6799999999999999988763     4799999999999999  433211         13344444221123357899


Q ss_pred             EEEECCchhh-hccc-cc----------------cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh----HHHHHHH
Q 043626          116 GAISISAVQW-LCNA-DK----------------ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV----AQRELIL  173 (291)
Q Consensus       116 ~Vis~~~l~~-l~~~-~~----------------~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~----~~~~~i~  173 (291)
                      +||+|..+.- .... ..                ...........|+..+.+.|++||++++.+...-.    .....+.
T Consensus       402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLR  481 (878)
T 3s1s_A          402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFR  481 (878)
T ss_dssp             EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHH
Confidence            9999966521 0000 00                00000011456889999999999999997633211    1234566


Q ss_pred             HHHHHcCCCCcEEEeCCC
Q 043626          174 GAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       174 ~~~~~aGF~~~~~~~~p~  191 (291)
                      +.+.+.+. ...++++|.
T Consensus       482 k~LLe~~~-I~aIIdLP~  498 (878)
T 3s1s_A          482 EFLVGNFG-LEHIFLYPR  498 (878)
T ss_dssp             HHHTTTTC-EEEEEECCB
T ss_pred             HHHHhCCC-eEEEEECCC
Confidence            66554432 235667765

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.54  E-value=1.3e-07  Score=83.59  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-------C-------CeEEEEeCCH---HHHHHH-----------Hhc-----------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-------G-------HQWIGLDISQ---SMLNIA-----------LER-----------   92 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-------g-------~~v~gvDis~---~ml~~a-----------~~~-----------   92 (291)
                      +.+|||||||+|..+..+++.       +       .+++++|..+   .++..+           ++.           
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            569999999999988776542       1       4899999766   555533           221           


Q ss_pred             ----C----CcceEEEccCCCCCCCCCC----cccEEEECC-chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626           93 ----E----VEGDLLLGDMGQGLGLRPG----VVDGAISIS-AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus        93 ----~----~~~~~~~~D~~~~~~~~~~----~fD~Vis~~-~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                          .    ..++++.+|+.+.++..++    .||+|+... +..         .+|..=...+|..++++|+|||+++.
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~---------~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA---------KNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT---------TCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc---------cChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                1    1256788887554553333    799999642 111         12321125799999999999999883


Q ss_pred             EEcCCChHHHHHHHHHHHHcCCCC
Q 043626          160 QIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                        |....    .+...+..+||..
T Consensus       212 --ysaa~----~vrr~L~~aGF~v  229 (257)
T 2qy6_A          212 --FTSAG----FVRRGLQEAGFTM  229 (257)
T ss_dssp             --SCCBH----HHHHHHHHHTEEE
T ss_pred             --EeCCH----HHHHHHHHCCCEE
Confidence              43332    4666778899974

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.53  E-value=1.2e-07  Score=87.60  Aligned_cols=134  Identities=13%  Similarity=0.032  Sum_probs=87.3

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----------cceEEEccC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----------EGDLLLGDM  103 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----------~~~~~~~D~  103 (291)
                      +..+..+|+..+   +.+|||++||+|.-+..|++.+  ..++++|+++.-+...+++..           .+.+...|.
T Consensus       137 S~l~~~~L~~~p---g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~  213 (359)
T 4fzv_A          137 SLLPVLALGLQP---GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG  213 (359)
T ss_dssp             GHHHHHHHCCCT---TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred             HHHHHHHhCCCC---CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence            334555667666   7899999999999999999886  479999999998877766432           345666675


Q ss_pred             CCCCCCCCCcccEEEECCch----hhh--ccccccCC-chHH------HHHHHHHHHHHhccCCcEEEEEEcC----CCh
Q 043626          104 GQGLGLRPGVVDGAISISAV----QWL--CNADKASH-EPRL------RLKAFFGSLYRCLARGARAVFQIYP----ESV  166 (291)
Q Consensus       104 ~~~~~~~~~~fD~Vis~~~l----~~l--~~~~~~~~-~p~~------~l~~~l~~l~~~LkpgG~lv~~~~~----~~~  166 (291)
                      ........+.||.|++...-    .++  .+++.... .+..      ....+|..+..+|||||++|-++..    +|.
T Consensus       214 ~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE  293 (359)
T 4fzv_A          214 RKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNE  293 (359)
T ss_dssp             GGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTH
T ss_pred             hhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCH
Confidence            33222346789999964221    011  11121111 1111      1257888999999999999987654    344


Q ss_pred             HHHHHHH
Q 043626          167 AQRELIL  173 (291)
Q Consensus       167 ~~~~~i~  173 (291)
                      .+++.+.
T Consensus       294 ~vV~~~L  300 (359)
T 4fzv_A          294 YVVQGAI  300 (359)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.45  E-value=1.9e-07  Score=92.44  Aligned_cols=135  Identities=10%  Similarity=-0.006  Sum_probs=83.3

Q ss_pred             cccCCchhhcccccc----chhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH----cC----------
Q 043626           12 EIFYDDTEARKYTSS----SRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE----NG----------   73 (291)
Q Consensus        12 e~fy~~~~a~~Y~~~----~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~----~g----------   73 (291)
                      +-..+.-++..|...    .+...++..+...+.++.....  ....|||||||+|.++.....    .+          
T Consensus       368 QPL~dNLes~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~--~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~  445 (745)
T 3ua3_A          368 QPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGR--KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESL  445 (745)
T ss_dssp             CTTTSCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCC
T ss_pred             CcchhccchHHHHHHcCChhhHHHHHHHHHHHHHHhhcccC--CCcEEEEECCCCCHHHHHHHHHHHHhCcccccccccc
Confidence            334455666677653    2233445555554445443211  145899999999999743321    12          


Q ss_pred             -CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCC-----CCcccEEEECCchhhhccccccCCchHHHHHH
Q 043626           74 -HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLR-----PGVVDGAISISAVQWLCNADKASHEPRLRLKA  142 (291)
Q Consensus        74 -~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~-----~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~  142 (291)
                       .+|++||.|+.++..++.+.     ..+.++.+|+.+ +.++     ++..|+|||-..=..+++.         ....
T Consensus       446 ~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~ee-v~lp~~~~~~ekVDIIVSElmGsfl~nE---------L~pe  515 (745)
T 3ua3_A          446 KVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRS-LPGIAKDRGFEQPDIIVSELLGSFGDNE---------LSPE  515 (745)
T ss_dssp             EEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGG-HHHHHHHTTCCCCSEEEECCCBTTBGGG---------SHHH
T ss_pred             ccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhh-cccccccCCCCcccEEEEeccccccchh---------ccHH
Confidence             39999999997665444322     238999999944 4332     5789999986443333221         1345


Q ss_pred             HHHHHHHhccCCcEEE
Q 043626          143 FFGSLYRCLARGARAV  158 (291)
Q Consensus       143 ~l~~l~~~LkpgG~lv  158 (291)
                      .|..+.+.|+|||.++
T Consensus       516 ~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          516 CLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHTTGGGSCTTCEEE
T ss_pred             HHHHHHHhCCCCcEEE
Confidence            6777789999999866

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.44  E-value=9.9e-08  Score=76.64  Aligned_cols=82  Identities=13%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCc-hhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCC--CcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSG-LSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRP--GVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG-~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~--~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||||||+| ..+..|++ .|..|+++|+++..++          +++.|+..  |...  ..||+|.++....   
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------~v~dDiF~--P~~~~Y~~~DLIYsirPP~---  100 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------IVRDDITS--PRMEIYRGAALIYSIRPPA---  100 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------EECCCSSS--CCHHHHTTEEEEEEESCCT---
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------eEEccCCC--CcccccCCcCEEEEcCCCH---
Confidence            569999999999 59999997 8899999999997654          88888854  3222  4899998864432   


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                                 .+...+-.+++.  -|.-+++..
T Consensus       101 -----------El~~~i~~lA~~--v~adliI~p  121 (153)
T 2k4m_A          101 -----------EIHSSLMRVADA--VGARLIIKP  121 (153)
T ss_dssp             -----------TTHHHHHHHHHH--HTCEEEEEC
T ss_pred             -----------HHHHHHHHHHHH--cCCCEEEEc
Confidence                       245555556554  366677764

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.43  E-value=6.6e-07  Score=78.25  Aligned_cols=131  Identities=17%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHH--HHHHHHhcC-Ccc---eEEEc-cCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQS--MLNIALERE-VEG---DLLLG-DMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~--ml~~a~~~~-~~~---~~~~~-D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +..|||+||++|.+++.+++.  ...|.|.++..+  +...  ... ..+   .+..+ |+.+   ..+..+|+|+|-.+
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~--~~~~~Gv~~i~~~~G~Df~~---~~~~~~DvVLSDMA  148 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM--LMQSYGWNIVTMKSGVDVFY---KPSEISDTLLCDIG  148 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCGGG---SCCCCCSEEEECCC
T ss_pred             CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC--cccCCCceEEEeeccCCccC---CCCCCCCEEEeCCC
Confidence            789999999999999999987  234445544332  1100  000 122   33335 8743   33568999999876


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCc-EEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGA-RAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK  194 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG-~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~  194 (291)
                      .. -  ..... +-...+. +|.-+...|+||| .|++-++.........+...+.+. |.. +.+.-|.|..
T Consensus       149 Pn-S--G~~~v-D~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~-F~~-vkvk~paSR~  214 (269)
T 2px2_A          149 ES-S--PSAEI-EEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR-FGG-GLVRVPLSRN  214 (269)
T ss_dssp             CC-C--SCHHH-HHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCC-EEECCTTSCT
T ss_pred             CC-C--CccHH-HHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH-cCC-EEEECCCCCC
Confidence            53 1  11111 1111123 6777779999999 999987764334444444444444 776 4466675543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.42  E-value=1.7e-06  Score=73.51  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCC--------------CC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQG--------------LG  108 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~--------------~~  108 (291)
                      +.+||||||  |.++..+++. +.+|+.||.++.+.+.|++++.        .++++.+|+.+.              ++
T Consensus        31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            569999998  5788888886 6899999999999999987542        367888997543              11


Q ss_pred             --------C-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          109 --------L-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       109 --------~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                              . ..++||+|+.....                ....+..+...|+|||++++.-
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~k----------------~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGRF----------------RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSSS----------------HHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHhhhhhccccCCCCCEEEEeCCC----------------chhHHHHHHHhcCCCeEEEEeC
Confidence                    1 23789999965321                1244555679999999998853

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.37  E-value=5.4e-07  Score=88.82  Aligned_cols=133  Identities=14%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             cCCchhhccccccc----hhHHHHHHHHHHHHHHhCCCCC-CCCCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCC
Q 043626           14 FYDDTEARKYTSSS----RIIDIQAKLSERALELLALPDD-GVPRLLLDIGCGSGLSGETLSEN----G--HQWIGLDIS   82 (291)
Q Consensus        14 fy~~~~a~~Y~~~~----~~~~iq~~~~~~~lelL~~~~~-~~~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis   82 (291)
                      ..+.-++..|....    +...++..+...+.+.+..... .....|||||||+|.+....+..    +  .+|++||-|
T Consensus       315 l~dnL~s~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn  394 (637)
T 4gqb_A          315 LMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN  394 (637)
T ss_dssp             TTSCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred             hhhhhhhhhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            34445555665532    2444555665555555433221 11357999999999985544443    2  268999999


Q ss_pred             HHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcE
Q 043626           83 QSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR  156 (291)
Q Consensus        83 ~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~  156 (291)
                      +. ...|++..      ..+.++.+|+.+ +.. ++.+|+|||=..=..+.+.      .   ....+....+.|||||.
T Consensus       395 p~-A~~a~~~v~~N~~~dkVtVI~gd~ee-v~L-PEKVDIIVSEwMG~fLl~E------~---mlevL~Ardr~LKPgGi  462 (637)
T 4gqb_A          395 PN-AVVTLENWQFEEWGSQVTVVSSDMRE-WVA-PEKADIIVSELLGSFADNE------L---SPECLDGAQHFLKDDGV  462 (637)
T ss_dssp             HH-HHHHHHHHHHHTTGGGEEEEESCTTT-CCC-SSCEEEEECCCCBTTBGGG------C---HHHHHHHHGGGEEEEEE
T ss_pred             HH-HHHHHHHHHhccCCCeEEEEeCccee-ccC-CcccCEEEEEcCccccccc------C---CHHHHHHHHHhcCCCcE
Confidence            84 44554432      237999999955 433 4789999985443333331      1   23567777899999998


Q ss_pred             EE
Q 043626          157 AV  158 (291)
Q Consensus       157 lv  158 (291)
                      ++
T Consensus       463 mi  464 (637)
T 4gqb_A          463 SI  464 (637)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.37  E-value=8.4e-06  Score=75.22  Aligned_cols=117  Identities=10%  Similarity=-0.042  Sum_probs=75.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +.+||||||.+|.++..|+++|..|+|||+.+ | +-.....+.+.++.+|... +....+.||+|+|.++.++      
T Consensus       212 G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l-~~~l~~~~~V~~~~~d~~~-~~~~~~~~D~vvsDm~~~p------  282 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-M-AQSLMDTGQVTWLREDGFK-FRPTRSNISWMVCDMVEKP------  282 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-C-CHHHHTTTCEEEECSCTTT-CCCCSSCEEEEEECCSSCH------
T ss_pred             CCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-c-ChhhccCCCeEEEeCcccc-ccCCCCCcCEEEEcCCCCh------
Confidence            78999999999999999999999999999864 2 2222234568889998744 3344578999999877642      


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEE-EEEcCCCh-----HHHHHHHHHHHHcCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAV-FQIYPESV-----AQRELILGAAMRAGFAG  183 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv-~~~~~~~~-----~~~~~i~~~~~~aGF~~  183 (291)
                           .. ...++..+...+..++.++ +.+-....     .....+...+...||..
T Consensus       283 -----~~-~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          283 -----AK-VAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA  334 (375)
T ss_dssp             -----HH-HHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             -----HH-hHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence                 22 2233333333333333322 33322221     23556777888899975

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.26  E-value=4.7e-06  Score=74.47  Aligned_cols=119  Identities=12%  Similarity=-0.023  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-------CCeEEEEeCCHH--------------------------HHHHHHhcC-----
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-------GHQWIGLDISQS--------------------------MLNIALERE-----   93 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-------g~~v~gvDis~~--------------------------ml~~a~~~~-----   93 (291)
                      +..||||||..|.++..++..       +..++++|+.+.                          .++.+++++     
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            569999999999999887642       578999996421                          244455442     


Q ss_pred             --CcceEEEccCCCCCC-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626           94 --VEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRE  170 (291)
Q Consensus        94 --~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~  170 (291)
                        ..+.++.+|+.+.++ +..++||+|+.-.-..             .....+|..++..|+|||.+++.-+...+....
T Consensus       187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y-------------~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~  253 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY-------------ESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKD  253 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH-------------HHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHH
T ss_pred             CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc-------------ccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHH
Confidence              347899998866555 3357899999653321             114578999999999999999987754466677


Q ss_pred             HHHHHHHHcCCCC
Q 043626          171 LILGAAMRAGFAG  183 (291)
Q Consensus       171 ~i~~~~~~aGF~~  183 (291)
                      .+.+.+.+.|+..
T Consensus       254 Av~Ef~~~~~i~~  266 (282)
T 2wk1_A          254 AVDEYRAKFDIAD  266 (282)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHhcCCce
Confidence            7888888888764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.24  E-value=2.8e-06  Score=75.61  Aligned_cols=81  Identities=26%  Similarity=0.292  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCC---CC-
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQG---LG-  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~---~~-  108 (291)
                      .|.+.+++.|.+.+   +..+||.+||.|..+..|++.+..|+|+|.++.+++.|++ ..  .+.++++++.+.   +. 
T Consensus         9 VLl~e~le~L~~~~---gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~   84 (285)
T 1wg8_A            9 VLYQEALDLLAVRP---GGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAA   84 (285)
T ss_dssp             TTHHHHHHHHTCCT---TCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHHHhhCCCC---CCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHH
Confidence            35778899998876   6799999999999999999988899999999999999988 53  367788777431   10 


Q ss_pred             CCCCcccEEEE
Q 043626          109 LRPGVVDGAIS  119 (291)
Q Consensus       109 ~~~~~fD~Vis  119 (291)
                      ...++||+|++
T Consensus        85 ~g~~~vDgIL~   95 (285)
T 1wg8_A           85 LGVERVDGILA   95 (285)
T ss_dssp             TTCSCEEEEEE
T ss_pred             cCCCCcCEEEe
Confidence            11256888886

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.20  E-value=7.6e-06  Score=75.78  Aligned_cols=128  Identities=13%  Similarity=0.008  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc-------------ceEEEccCCCCCC---CCCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE-------------GDLLLGDMGQGLG---LRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~-------------~~~~~~D~~~~~~---~~~~~f  114 (291)
                      +.+||-||-|.|.....+.+.. ..++.|||++.+++.|++.++.             +.++.+|....+.   -..+.|
T Consensus       206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~y  285 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREF  285 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCce
Confidence            6799999999999999988865 7899999999999999986532             4566777533221   124679


Q ss_pred             cEEEECCchhhhccccccCCch--HHHHHHHHHHHHHhccCCcEEEEEEc-CCChHHHHHHHHHHHHcCCCC
Q 043626          115 DGAISISAVQWLCNADKASHEP--RLRLKAFFGSLYRCLARGARAVFQIY-PESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p--~~~l~~~l~~l~~~LkpgG~lv~~~~-~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      |+||....-..... +  ...|  ..-...|++.+.++|+|||+++.+.. +........+.+.+.+. |..
T Consensus       286 DvIIvDl~D~~~s~-~--p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~  353 (381)
T 3c6k_A          286 DYVINDLTAVPIST-S--PEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCP  353 (381)
T ss_dssp             EEEEEECCSSCCCC-C------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSC
T ss_pred             eEEEECCCCCcccC-c--ccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCc
Confidence            99997532111100 0  0011  11136889999999999999998753 33344555666666665 443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.16  E-value=6.1e-05  Score=67.02  Aligned_cols=138  Identities=16%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHH---HHh-cCCcceEEEc-cCCCCCCCCCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNI---ALE-REVEGDLLLG-DMGQGLGLRPG  112 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~---a~~-~~~~~~~~~~-D~~~~~~~~~~  112 (291)
                      +.+...+.+   ...||||||++|.++..++.+ | ..|+|+|+...-.+.   .++ ...-+.+... |+ ..++  +.
T Consensus        86 i~~~~~l~~---~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv-~~l~--~~  159 (321)
T 3lkz_A           86 LVERRFLEP---VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDV-FYRP--SE  159 (321)
T ss_dssp             HHHTTSCCC---CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCT-TSSC--CC
T ss_pred             HHHhcCCCC---CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCH-hhCC--CC
Confidence            344444544   669999999999999977766 5 679999997651100   000 0011556665 66 2233  36


Q ss_pred             cccEEEECCchhhhccccccCCchHHH---HHHHHHHHHHhccCC-cEEEEEEc-CCChHHHHHHHHHHHHcCCCCcEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLR---LKAFFGSLYRCLARG-ARAVFQIY-PESVAQRELILGAAMRAGFAGGVVV  187 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~---l~~~l~~l~~~Lkpg-G~lv~~~~-~~~~~~~~~i~~~~~~aGF~~~~~~  187 (291)
                      .+|.|+|... .-       +.+|...   -..+|.-+...|++| |-|++.+. |+.++.++.+.. +++. |.+ ..+
T Consensus       160 ~~D~ivcDig-eS-------s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~-lq~~-fgg-~lv  228 (321)
T 3lkz_A          160 CCDTLLCDIG-ES-------SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMEL-LQRR-YGG-GLV  228 (321)
T ss_dssp             CCSEEEECCC-CC-------CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHH-HHHH-HCC-EEE
T ss_pred             CCCEEEEECc-cC-------CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHH-HHHH-hCC-EeE
Confidence            7999998643 21       1223221   233677778889998 88888654 555555544433 3332 665 666


Q ss_pred             eCCCCCC
Q 043626          188 DYPHSSK  194 (291)
Q Consensus       188 ~~p~~~~  194 (291)
                      .-|.|..
T Consensus       229 r~P~SRn  235 (321)
T 3lkz_A          229 RNPLSRN  235 (321)
T ss_dssp             CCTTSCT
T ss_pred             eCCCCCC
Confidence            7777644

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.11  E-value=6.5e-05  Score=64.89  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=83.5

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHH--h--cCCcceEEEc-cCCCCCCCCCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIAL--E--REVEGDLLLG-DMGQGLGLRPG  112 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~--~--~~~~~~~~~~-D~~~~~~~~~~  112 (291)
                      +.+...+.+   +..||||||++|.++..++.+ | ..|+|+|+-..-.+.-.  +  -...+.|..+ |+.. +  ++.
T Consensus        70 i~ek~~l~~---g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~-~--~~~  143 (267)
T 3p8z_A           70 FVERNMVIP---EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFY-L--PPE  143 (267)
T ss_dssp             HHHTTSSCC---CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGG-C--CCC
T ss_pred             HHHhcCCCC---CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceee-c--CCc
Confidence            344444544   679999999999999977766 4 68999999653210000  0  0123677777 7622 2  246


Q ss_pred             cccEEEECCchhhhccccccCCchHHH---HHHHHHHHHHhccCCcEEEEEE-cCCChHHHHHHHHHHHHcCCCCcEEEe
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLR---LKAFFGSLYRCLARGARAVFQI-YPESVAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~---l~~~l~~l~~~LkpgG~lv~~~-~~~~~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      ++|.|+|...-        ++.+|...   -..+|.-+...|++ |-+++.+ .|+.++.++.+.. +.+. |.+ ..+.
T Consensus       144 ~~DtllcDIge--------Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~-lq~~-fgg-~lVR  211 (267)
T 3p8z_A          144 KCDTLLCDIGE--------SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLER-LQRK-HGG-MLVR  211 (267)
T ss_dssp             CCSEEEECCCC--------CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHH-HHHH-HCC-EEEC
T ss_pred             cccEEEEecCC--------CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHH-HHHH-hCC-EeEe
Confidence            79999987443        11223322   23367777889999 6777754 4666555544433 2322 665 6667


Q ss_pred             CCCCCCC
Q 043626          189 YPHSSKS  195 (291)
Q Consensus       189 ~p~~~~~  195 (291)
                      -|.|...
T Consensus       212 ~P~SRns  218 (267)
T 3p8z_A          212 NPLSRNS  218 (267)
T ss_dssp             CTTSCTT
T ss_pred             CCCCCCC
Confidence            7776543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.07  E-value=7.3e-06  Score=73.56  Aligned_cols=56  Identities=21%  Similarity=0.335  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      .+.+++++.+.. +   +..|||++||+|..+..++..|..++|+|+++.+++.|+++..
T Consensus       223 ~l~~~~i~~~~~-~---~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~  278 (297)
T 2zig_A          223 ELAERLVRMFSF-V---GDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFA  278 (297)
T ss_dssp             HHHHHHHHHHCC-T---TCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-C---CCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence            677888888763 3   6799999999999999999999999999999999999998764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.96  E-value=5.5e-05  Score=73.34  Aligned_cols=153  Identities=13%  Similarity=0.024  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhcC-----C
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---------------GHQWIGLDISQSMLNIALERE-----V   94 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---------------g~~v~gvDis~~ml~~a~~~~-----~   94 (291)
                      .+++.+++++....   +.+|+|-+||||.+...+.+.               ...++|+|+++.+..+|+-+.     .
T Consensus       204 ~Vv~lmv~l~~p~~---~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~  280 (530)
T 3ufb_A          204 PVVRFMVEVMDPQL---GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE  280 (530)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHhhccCC---CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence            45566677776554   679999999999987665532               246999999999999988653     2


Q ss_pred             cceEEEccCCCCCC----CCCCcccEEEECCchhhhcccc-----ccCCchHHHHHHHHHHHHHhcc-------CCcEEE
Q 043626           95 EGDLLLGDMGQGLG----LRPGVVDGAISISAVQWLCNAD-----KASHEPRLRLKAFFGSLYRCLA-------RGARAV  158 (291)
Q Consensus        95 ~~~~~~~D~~~~~~----~~~~~fD~Vis~~~l~~l~~~~-----~~~~~p~~~l~~~l~~l~~~Lk-------pgG~lv  158 (291)
                      ...+..+|... .+    .....||+||+|..+.--...+     .........-..|+..+.+.|+       +||++.
T Consensus       281 ~~~I~~~dtL~-~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a  359 (530)
T 3ufb_A          281 YPRIDPENSLR-FPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA  359 (530)
T ss_dssp             CCEEECSCTTC-SCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred             ccccccccccc-CchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence            23566666422 12    1234799999997663100000     0000011113467888888887       699999


Q ss_pred             EEEcCC---ChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          159 FQIYPE---SVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       159 ~~~~~~---~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                      +.+...   .......|.+.+.+.+.-. .++..|..
T Consensus       360 vVlP~g~Lf~~~~~~~iRk~Lle~~~l~-aII~LP~~  395 (530)
T 3ufb_A          360 VVVPNGTLFSDGISARIKEELLKNFNLH-TIVRLPEG  395 (530)
T ss_dssp             EEEEHHHHHCCTHHHHHHHHHHHHSEEE-EEEECCTT
T ss_pred             EEecchhhhccchHHHHHHHHhhcCEEE-EEEECCcc
Confidence            876321   1112234666666654332 55666543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.81  E-value=5.6e-05  Score=67.25  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             CCeEEEEcC------CCchhHHHHHH---cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGC------GSGLSGETLSE---NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGc------GsG~~~~~L~~---~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      +++|||+|+      -+|..  .+.+   .|..++++|+.+-..      .. ..++++|..+ +. ..+.||+|+|-++
T Consensus       110 gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------da-~~~IqGD~~~-~~-~~~k~DLVISDMA  178 (344)
T 3r24_A          110 NMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------DA-DSTLIGDCAT-VH-TANKWDLIISDMY  178 (344)
T ss_dssp             TCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------SS-SEEEESCGGG-EE-ESSCEEEEEECCC
T ss_pred             CCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------CC-CeEEEccccc-cc-cCCCCCEEEecCC
Confidence            789999996      55663  3333   246999999976321      11 2458888633 21 2478999999877


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVL  202 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l  202 (291)
                      ..--.+.+........-...++.-+.+.|+|||.|++.++.....  +.+.+ +.+ -|....++. +.+........++
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~--~~L~~-lrk-~F~~VK~fK-~ASRa~SsEvYLV  253 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYK-LMG-HFSWWTAFV-TNVNASSSEAFLI  253 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHH-HHT-TEEEEEEEE-EGGGTTSSCEEEE
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH--HHHHH-HHh-hCCeEEEEC-CCCCCCCeeEEEE
Confidence            543222111110111124567777889999999999988765443  22333 333 687633333 4444333333333


Q ss_pred             eeCCC
Q 043626          203 TCGPP  207 (291)
Q Consensus       203 ~~g~~  207 (291)
                      ..|.+
T Consensus       254 G~gfK  258 (344)
T 3r24_A          254 GANYL  258 (344)
T ss_dssp             EEEEC
T ss_pred             eeecc
Confidence            34443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.60  E-value=0.00015  Score=63.69  Aligned_cols=56  Identities=27%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      .+.+++++.... +   +..|||..||+|..+......|..++|+|+++.+++.|+++..
T Consensus       200 ~l~~~~i~~~~~-~---~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          200 DLIERIIRASSN-P---NDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             HHHHHHHHHHCC-T---TCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-C---CCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence            677788887653 2   6799999999999999999999999999999999999998754

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.54  E-value=0.00021  Score=65.48  Aligned_cols=131  Identities=14%  Similarity=0.094  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--CCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||+.||.|.++.-+...|   ..++++|+++.+++..+.+.....++.+|+.+..+  +....+|+++....-|.+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f   81 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF   81 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence            4689999999999999999888   36999999999999999999887888999854221  111268999998776655


Q ss_pred             cccccc--CCchHHHH-HHHHHHHHHhcc--CCcEEEEEEcC-CChHHHHHHHHHHHHcCCCC
Q 043626          127 CNADKA--SHEPRLRL-KAFFGSLYRCLA--RGARAVFQIYP-ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       127 ~~~~~~--~~~p~~~l-~~~l~~l~~~Lk--pgG~lv~~~~~-~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..+.+.  ..+++..+ ..++ .+...++  |.-.++=.+.. .+......+...+...||..
T Consensus        82 S~ag~~~g~~d~r~~l~~~~~-~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v  143 (343)
T 1g55_A           82 TRIGRQGDMTDSRTNSFLHIL-DILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQY  143 (343)
T ss_dssp             --------------CHHHHHH-HHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             hhcCCcCCccCccchHHHHHH-HHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCee
Confidence            433211  11222112 2222 3344455  65333322322 13356778889999999875

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.38  E-value=0.0025  Score=57.90  Aligned_cols=129  Identities=12%  Similarity=-0.038  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      ..++||+.||.|.++.-+...| ..+.++|+++.+++..+.++....  .+|+.+..+..-..+|+|+.....|-+..+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag   88 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSISG   88 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTTS
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchhc
Confidence            4689999999999999999998 468889999999999998876543  6777443222223599999987777665443


Q ss_pred             cc--CCchHHHHHHHHHHHHHhccCCcEEEEE-EcC----CChHHHHHHHHHHHHcCCCC
Q 043626          131 KA--SHEPRLRLKAFFGSLYRCLARGARAVFQ-IYP----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 ~~--~~~p~~~l~~~l~~l~~~LkpgG~lv~~-~~~----~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.  ..+++..+-.-+-.+...++|.- +++. +-.    ........+...+...||..
T Consensus        89 ~~~g~~d~r~~L~~~~~r~i~~~~P~~-~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v  147 (327)
T 2c7p_A           89 KQKGFEDSRGTLFFDIARIVREKKPKV-VFMENVKNFASHDNGNTLEVVKNTMNELDYSF  147 (327)
T ss_dssp             CCCGGGSTTSCHHHHHHHHHHHHCCSE-EEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC
T ss_pred             ccCCCcchhhHHHHHHHHHHHhccCcE-EEEeCcHHHHhccccHHHHHHHHHHHhCCCEE
Confidence            22  12343323223334445578863 4443 321    12346778899999999986

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.36  E-value=0.002  Score=59.63  Aligned_cols=130  Identities=15%  Similarity=0.064  Sum_probs=86.9

Q ss_pred             CeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--C-----CCCcccEEEECCchh
Q 043626           53 RLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--L-----RPGVVDGAISISAVQ  124 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~-----~~~~fD~Vis~~~l~  124 (291)
                      .++||+.||.|.++.-+...|. .+.++|+++.+++..+.+.+...++++|+.+..+  +     ..+.+|+|+....-|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ   82 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ   82 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence            5899999999999999999985 5679999999999999999888889999854321  1     346899999876655


Q ss_pred             hhcccccc-CCchHHHHHHHHHHHHHhccCCcEEEEEEcC----CChHHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKA-SHEPRLRLKAFFGSLYRCLARGARAVFQIYP----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~-~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~----~~~~~~~~i~~~~~~aGF~~  183 (291)
                      -+..+.+. ..+++..+-.-+-.+...++|.-.++=.+-.    ......+.+. .+...||..
T Consensus        83 ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           83 GFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             TTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             CcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            54433222 2334444433344555667886433322211    2233566777 889999864

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.25  E-value=0.00053  Score=60.92  Aligned_cols=125  Identities=10%  Similarity=-0.113  Sum_probs=91.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCC---CCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLG---LRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~---~~~~~fD~Vis~~~l~~  125 (291)
                      +..+||+-+|||.++..+...+..++.||.++..+...+++..   .+.++..|....+.   -+...||+|+.-.....
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~  171 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER  171 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS
T ss_pred             CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCC
Confidence            4578999999999999988877899999999999999998874   36778888533221   12357999997654431


Q ss_pred             hccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEe
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVD  188 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~  188 (291)
                      -.           .+..++..+..  .+.++|.+++...--.....+.+.+.+.+.|. ..+.+.
T Consensus       172 k~-----------~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~-~~l~~e  224 (283)
T 2oo3_A          172 KE-----------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS-KSVRIE  224 (283)
T ss_dssp             TT-----------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS-SEEEEE
T ss_pred             Cc-----------HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC-CeEEEE
Confidence            11           14556665654  46789999988655666778888888988888 534443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.25  E-value=5.4e-05  Score=85.24  Aligned_cols=98  Identities=13%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-------CCeEEEEeCCHHHHHHHHhcCCcceEEE--ccCCCCCCCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-------GHQWIGLDISQSMLNIALEREVEGDLLL--GDMGQGLGLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-------g~~v~gvDis~~ml~~a~~~~~~~~~~~--~D~~~~~~~~~~~fD~Vis~~~  122 (291)
                      ..+||+||.|+|..+..+.+.       ...++..|+|+...+.|++++...++..  .|.....+|...+||+||+..+
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence            569999999999876554432       1378999999888877777654433333  2331212445678999999999


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|-..+           +...+.++.++|+|||.+++.
T Consensus      1321 l~~t~~-----------~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A         1321 LATLGD-----------PAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp             -------------------------------CCEEEEE
T ss_pred             cccccc-----------HHHHHHHHHHhcCCCcEEEEE
Confidence            976554           668899999999999999885

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.23  E-value=0.0045  Score=55.72  Aligned_cols=129  Identities=13%  Similarity=0.065  Sum_probs=90.9

Q ss_pred             CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc-
Q 043626           53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD-  130 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~-  130 (291)
                      ++|||+-||.|.+..-|.+.| ..+.++|+++.+++.-+.+++. .++.+|+.+..+-.-..+|+++....-|-+..+. 
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~-~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~   79 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-KLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS   79 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS-EEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC-CcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence            479999999999999999988 4567999999999988888764 6788898542222234689999887777665433 


Q ss_pred             -ccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-----CCChHHHHHHHHHHHHcCCCC
Q 043626          131 -KASHEPRLRLKAFFGSLYRCLARGARAVFQIY-----PESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 -~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-----~~~~~~~~~i~~~~~~aGF~~  183 (291)
                       +...+++..+-.-+-.+...++|. .+++.--     .........+...+...||..
T Consensus        80 ~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v  137 (331)
T 3ubt_Y           80 LRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDV  137 (331)
T ss_dssp             ECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEE
T ss_pred             ccCCCCchhHHHHHHHHHHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcEE
Confidence             223456544544444566677886 3444322     234467788899999999874

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.22  E-value=0.00087  Score=61.56  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhCCCCC---CCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC--CcceEEEccCC
Q 043626           35 KLSERALELLALPDD---GVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE--VEGDLLLGDMG  104 (291)
Q Consensus        35 ~~~~~~lelL~~~~~---~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~--~~~~~~~~D~~  104 (291)
                      .+++++++.+.+.+.   ..+..|||||.|.|.+|..|++.  ...+++|++++.++...++..  .+..++.+|+.
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l  115 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY  115 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCcc
Confidence            567788888876530   01479999999999999999986  579999999999999887754  35788888873

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.22  E-value=0.00021  Score=64.94  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCC--
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGL--  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~--  107 (291)
                      .|.+.+++.|.+.+   +..+||..||.|..+..|++. +  ..|+|+|.++.+++.|+ +..  .+.+++++..+..  
T Consensus        44 VLl~Evl~~L~i~p---ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           44 VLLDEAVNGLNIRP---DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             TTTHHHHHHTCCCT---TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHH
T ss_pred             ccHHHHHHhhCCCC---CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHH
Confidence            46788999998876   789999999999999999886 3  79999999999999984 432  3567777764311  


Q ss_pred             -C-CC-CCcccEEEEC
Q 043626          108 -G-LR-PGVVDGAISI  120 (291)
Q Consensus       108 -~-~~-~~~fD~Vis~  120 (291)
                       + .. .+++|+|+..
T Consensus       120 L~~~g~~~~vDgILfD  135 (347)
T 3tka_A          120 VAERDLIGKIDGILLD  135 (347)
T ss_dssp             HHHTTCTTCEEEEEEE
T ss_pred             HHhcCCCCcccEEEEC
Confidence             1 00 1368888875

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.84  E-value=0.0073  Score=54.79  Aligned_cols=130  Identities=11%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeE-EEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--CCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQW-IGLDISQSMLNIALEREVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v-~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~~  125 (291)
                      ..+++|+.||.|.+..-+...|   ..+ .++|+++.+++..+.+++.. ++.+|+.+..+  ++...+|+++....-|.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~   88 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQP   88 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccC
Confidence            5689999999999999999988   345 69999999999998888765 66788844221  11236899998877665


Q ss_pred             h--ccccc--cCCchHHHH-HHHHHHHHHhc--cCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          126 L--CNADK--ASHEPRLRL-KAFFGSLYRCL--ARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l--~~~~~--~~~~p~~~l-~~~l~~l~~~L--kpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +  ..+.+  ...+++..+ ..++..+...+  +|. .+++.--+  ........|.+.+...||.-
T Consensus        89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v  154 (327)
T 3qv2_A           89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYI  154 (327)
T ss_dssp             CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEE
T ss_pred             cccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEE
Confidence            5  32211  123444322 22222133344  454 44443222  12345778899999999975

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.80  E-value=0.0033  Score=56.88  Aligned_cols=57  Identities=25%  Similarity=0.427  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      .+.+++++....+    +..|||.-||+|..+......|..++|+|+++..++.+.++...
T Consensus       240 ~l~~~~i~~~~~~----~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          240 KLPEFFIRMLTEP----DDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             HHHHHHHHHHCCT----TCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHhCCC----CCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            5667777766432    67999999999999999999999999999999999999998754

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.68  E-value=0.025  Score=50.84  Aligned_cols=104  Identities=15%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCCC-------CCCCCccc
Q 043626           52 PRLLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQGL-------GLRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~~-------~~~~~~fD  115 (291)
                      ...||+||||-=.....+.. .+..|+-|| .|.++...++...        ...++.+|+.+.+       .|.....=
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  181 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence            34799999998888777763 357999999 5888887766542        2467888886421       13334556


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      ++++-.+++|+..         .....+|..+...+.||+.+++...+.+
T Consensus       182 ~~i~Egvl~Yl~~---------~~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          182 AWLAEGLLMYLPA---------TAQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             EEEECSCGGGSCH---------HHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEEechHhhCCH---------HHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence            7888899999854         3477899999999999999999876543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.52  E-value=0.0029  Score=56.85  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCchhHHHHH----HcC----CeEEEEeCC------------HHHHHHHHhcCC-------cceEEEccCC
Q 043626           52 PRLLLDIGCGSGLSGETLS----ENG----HQWIGLDIS------------QSMLNIALEREV-------EGDLLLGDMG  104 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~----~~g----~~v~gvDis------------~~ml~~a~~~~~-------~~~~~~~D~~  104 (291)
                      ..+|||+|-|+|.......    +.+    .+++.+|..            ....+......+       ..+++.+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            5689999999998654332    222    456777742            122222222222       1367788875


Q ss_pred             CCCC-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          105 QGLG-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       105 ~~~~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.++ +....||+++.-.        -....+|..=-..+|+.++++++|||.++  +|...    ..+...|..+||.-
T Consensus       177 ~~l~~l~~~~~Da~flDg--------FsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYtaa----g~VRR~L~~aGF~V  242 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHDA--------FSPYKNPELWTLDFLSLIKERIDEKGYWV--SYSSS----LSVRKSLLTLGFKV  242 (308)
T ss_dssp             HHGGGCCSCCEEEEEECC--------SCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESCCC----HHHHHHHHHTTCEE
T ss_pred             HHHhhhcccceeEEEeCC--------CCcccCcccCCHHHHHHHHHHhCCCcEEE--EEeCc----HHHHHHHHHCCCEE
Confidence            5554 3345799998632        11122343223689999999999999776  55443    34667789999975


Q ss_pred             cEEEeC
Q 043626          184 GVVVDY  189 (291)
Q Consensus       184 ~~~~~~  189 (291)
                      ..+.-+
T Consensus       243 ~k~~G~  248 (308)
T 3vyw_A          243 GSSREI  248 (308)
T ss_dssp             EEEECC
T ss_pred             EecCCC
Confidence            444333

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.48  E-value=0.0088  Score=54.38  Aligned_cols=130  Identities=16%  Similarity=0.158  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--CCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+++|+.||.|.+..-+...|   ..+.++|+++..++..+.+++...++..|+.+..+  ++...+|+++....-|.+
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~f   82 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPF   82 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCS
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcch
Confidence            4589999999999999998887   35789999999999999999888888889844221  122368999987666654


Q ss_pred             ccccc--cCCchHHH-HHHHHHHHHHhcc-CCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCC
Q 043626          127 CNADK--ASHEPRLR-LKAFFGSLYRCLA-RGARAVFQIYPE--SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       127 ~~~~~--~~~~p~~~-l~~~l~~l~~~Lk-pgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..+.+  ...+++.. +..++ .+...++ |. .+++.--+.  +....+.+.+.+...||.-
T Consensus        83 S~ag~~~~~~d~r~~L~~~~~-r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v  143 (333)
T 4h0n_A           83 TRNGKYLDDNDPRTNSFLYLI-GILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIY  143 (333)
T ss_dssp             EETTEECCTTCTTSCCHHHHH-HHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             hhhhhccCCcCcccccHHHHH-HHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeE
Confidence            43221  12233322 22222 3334444 64 344443222  2235678899999999875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.45  E-value=0.005  Score=55.65  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCH---HHHHHHHhcCCc
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQ---SMLNIALEREVE   95 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~---~ml~~a~~~~~~   95 (291)
                      ..+.+++++....+    +..|||.-||+|..+......|..++|+|+++   ..++.+.++...
T Consensus       229 ~~l~~~~i~~~~~~----~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          229 AAVIERLVRALSHP----GSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             HHHHHHHHHHHSCT----TCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCCC----CCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence            36777888876533    67999999999999999999999999999999   999999998754

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.42  E-value=0.011  Score=52.81  Aligned_cols=110  Identities=19%  Similarity=0.125  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCe---EEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--CC-CCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQ---WIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--LR-PGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~---v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~~-~~~fD~Vis~~~l~~  125 (291)
                      ..++||+-||.|.++.-+...|..   +.++|+++..++..+.+.+...++.+|+.+..+  ++ .+.+|+++....-|-
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPCQ~   95 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCND   95 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEECCCCGG
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEecCCCcc
Confidence            568999999999999999999844   589999999999888888776788899854221  11 246999999887776


Q ss_pred             hcccc-c-c-CCchHHHHHHHHHHHHHhccCCc------EEEEEE
Q 043626          126 LCNAD-K-A-SHEPRLRLKAFFGSLYRCLARGA------RAVFQI  161 (291)
Q Consensus       126 l~~~~-~-~-~~~p~~~l~~~l~~l~~~LkpgG------~lv~~~  161 (291)
                      +..+. + . ..+++..+-.-+-.+...++|..      .+++.-
T Consensus        96 fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~EN  140 (295)
T 2qrv_A           96 LSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFEN  140 (295)
T ss_dssp             GBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEE
T ss_pred             ccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEc
Confidence            65443 1 1 23344333333344555667762      666653

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.05  E-value=0.18  Score=45.71  Aligned_cols=98  Identities=11%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC--------------------------CcceEEEccC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE--------------------------VEGDLLLGDM  103 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~--------------------------~~~~~~~~D~  103 (291)
                      ...|+.+|||.......|...  +..|+-||. |.+++.-++..                          ....++.+|+
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            568999999999999999874  478889998 77666544331                          2356788888


Q ss_pred             CCC---------CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEE-EEE
Q 043626          104 GQG---------LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV-FQI  161 (291)
Q Consensus       104 ~~~---------~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv-~~~  161 (291)
                      .+.         .+ .++...++|+-.++.|+.         ......+|+.+...+ |+|.++ +..
T Consensus       177 ~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~---------~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          177 NDITETTRLLDVCT-KREIPTIVISECLLCYMH---------NNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             TCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSC---------HHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             CCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCC---------HHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            651         12 345678999999999984         344778898888887 666664 543

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=96.01  E-value=0.027  Score=49.68  Aligned_cols=136  Identities=18%  Similarity=0.050  Sum_probs=80.8

Q ss_pred             cCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhc------CCcceEE-EccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           59 GCGSGLSGETLSEN-GHQWIGLDISQSMLNIALER------EVEGDLL-LGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        59 GcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~------~~~~~~~-~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      .++.|.....+.+. |+++..||-.-.   +-.++      .+..+++ ..|++.  |...+.+|+|+|+++...-    
T Consensus       149 ~~~~~~~~~~~~k~~g~~vl~v~~~~~---~p~k~v~wi~Pi~GAt~~~~lDfg~--p~~~~k~DvV~SDMApn~s----  219 (320)
T 2hwk_A          149 EHPQSDFSSFVSKLKGRTVLVVGEKLS---VPGKMVDWLSDRPEATFRARLDLGI--PGDVPKYDIIFVNVRTPYK----  219 (320)
T ss_dssp             CCCCCCCHHHHHTSSCSEEEEEESCCC---CTTSEEEEEESSTTCSEECCGGGCS--CTTSCCEEEEEEECCCCCC----
T ss_pred             ccCCCCHHHHHhhCCCcEEEEEecccc---cCCceeEeeccCCCceeecccccCC--ccccCcCCEEEEcCCCCCC----
Confidence            36777777777776 788888862110   00111      1123444 556543  3334779999998664321    


Q ss_pred             ccCCc-----hHHH-HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEee
Q 043626          131 KASHE-----PRLR-LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTC  204 (291)
Q Consensus       131 ~~~~~-----p~~~-l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~  204 (291)
                        .|+     .+.+ +.-++..+..+|+|||.+++..|...+...+.+...+.+. |....++.-+.+.. ....++++.
T Consensus       220 --Gh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~-F~~Vr~vKP~ASR~-StEvf~La~  295 (320)
T 2hwk_A          220 --YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQ-FKFSRVCKPKSSLE-ETEVLFVFI  295 (320)
T ss_dssp             --SCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-EEEEEEECCTTCCS-TTCEEEEEE
T ss_pred             --CccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHh-cceeeeeCCCCccc-cceEEEEEE
Confidence              111     1111 2336677789999999999999988766667777766655 88744545555555 444455555


Q ss_pred             CCC
Q 043626          205 GPP  207 (291)
Q Consensus       205 g~~  207 (291)
                      |.+
T Consensus       296 gf~  298 (320)
T 2hwk_A          296 GYD  298 (320)
T ss_dssp             EEC
T ss_pred             eec
Confidence            543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.87  E-value=0.0056  Score=55.30  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC----CCCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG----LRPG  112 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~----~~~~  112 (291)
                      .+++...+.+   +.+||-+|+|. |.....+++. |.+|+++|.++..++.+++.... .++...- ..+.    -..+
T Consensus       157 ~~l~~~~~~~---g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~~i~~~~-~~~~~~~~~~~g  231 (340)
T 3s2e_A          157 KGLKVTDTRP---GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE-VAVNARD-TDPAAWLQKEIG  231 (340)
T ss_dssp             HHHHTTTCCT---TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-EEEETTT-SCHHHHHHHHHS
T ss_pred             HHHHHcCCCC---CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC-EEEeCCC-cCHHHHHHHhCC
Confidence            3445555554   67999999975 7777777764 78999999999999998775433 1222111 1100    0123


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+|+|+-...-                 ...+..+.++|+++|++++.
T Consensus       232 ~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          232 GAHGVLVTAVS-----------------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             SEEEEEESSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEEeCCC-----------------HHHHHHHHHHhccCCEEEEe
Confidence            68888854221                 24677888999999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.84  E-value=0.01  Score=58.91  Aligned_cols=118  Identities=20%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc------------C--CeEEEEeC---CHHHHHHHHhcCC--------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN------------G--HQWIGLDI---SQSMLNIALEREV--------------------   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~------------g--~~v~gvDi---s~~ml~~a~~~~~--------------------   94 (291)
                      ..+|||+|.|+|.....+.+.            .  .+++.++.   +...+..+....+                    
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            579999999999977666542            1  57999998   6666665443321                    


Q ss_pred             ----------cceEEEccCCCCCCCC----CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           95 ----------EGDLLLGDMGQGLGLR----PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        95 ----------~~~~~~~D~~~~~~~~----~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                .++++.+|+.+.++--    .+.+|.++....        ....||..=...+|..+++++++||.+.  
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f--------~p~~np~~w~~~~~~~l~~~~~~g~~~~--  208 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGF--------APAKNPDMWNEQLFNAMARMTRPGGTFS--  208 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSS--------CC--CCTTCSHHHHHHHHHHEEEEEEEE--
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCC--------CCCCChhhhhHHHHHHHHHHhCCCCEEE--
Confidence                      1356777775544421    467999886421        1111222112588999999999999755  


Q ss_pred             EcCCChHHHHHHHHHHHHcCCCC
Q 043626          161 IYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +|...    ..+...+.++||..
T Consensus       209 t~~~~----~~vr~~l~~aGf~~  227 (689)
T 3pvc_A          209 TFTAA----GFVRRGLQQAGFNV  227 (689)
T ss_dssp             ESCCC----HHHHHHHHHTTCEE
T ss_pred             eccCc----HHHHHHHHhCCeEE
Confidence            33333    35677788999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.75  E-value=0.043  Score=49.79  Aligned_cols=100  Identities=18%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc------CCCCC-CC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD------MGQGL-GL  109 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D------~~~~~-~~  109 (291)
                      +++...+.+   +.+||-+|+|. |..+..+++. |. .|+++|.++..++.+++.... .++..+      ..+.+ ..
T Consensus       163 al~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          163 ACRRGGVTL---GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-LVLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             HHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-EEEECSSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-EEEcCcccccchHHHHHHHH
Confidence            445556665   67999999875 6666666654 76 899999999999988765433 222211      00000 00


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ....+|+|+-...-                 ...+....++|++||++++.
T Consensus       239 ~~~g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          239 LGCKPEVTIECTGA-----------------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             HTSCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             hCCCCCEEEECCCC-----------------hHHHHHHHHHhcCCCEEEEE
Confidence            01468999864321                 13566788999999998864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.72  E-value=0.047  Score=50.38  Aligned_cols=111  Identities=12%  Similarity=0.050  Sum_probs=66.8

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-C-----C-
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-G-----L-  109 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-~-----~-  109 (291)
                      +++...+.+   +.+||-+|||. |.++..+++. |. .|+++|.++..++.+++...  +++..+- ..+ .     . 
T Consensus       177 al~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--~~i~~~~-~~~~~~~~~~~~  250 (398)
T 2dph_A          177 GCVSAGVKP---GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF--ETIDLRN-SAPLRDQIDQIL  250 (398)
T ss_dssp             HHHHTTCCT---TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC--EEEETTS-SSCHHHHHHHHH
T ss_pred             HHHHcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--cEEcCCC-cchHHHHHHHHh
Confidence            345555555   77999999976 7777777764 76 89999999999999876543  3332221 111 0     0 


Q ss_pred             CCCcccEEEECCchhhhcc-ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCN-ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~-~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ....||+||-...-..... ++. .+.+   ....+..+.++|++||++++.
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEA-NTET---PNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGT-TSBC---TTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCCCEEEECCCCccccccccc-cccc---cHHHHHHHHHHHhcCCEEEEe
Confidence            1226999986533221000 000 0000   113577888999999998753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.70  E-value=0.023  Score=51.87  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=64.1

Q ss_pred             HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-CCCCCcc
Q 043626           42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-GLRPGVV  114 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~~~~~~f  114 (291)
                      +...+.+   +.+||-+|||. |.....+++. |. .|+++|.++..++.+++.... .++..+-.+   .+ ....+.+
T Consensus       184 ~~~~~~~---g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          184 NALKVTP---ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT-HVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTTCCCT---TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTSCE
T ss_pred             hccCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC-EEecCCccCHHHHHHHhcCCCC
Confidence            4445554   67999999876 7777777664 76 799999999999998765432 222221101   00 1112369


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+|+-....                 ...+..+.++|+++|++++.
T Consensus       260 D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          260 NFALESTGS-----------------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEEECSCC-----------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             cEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEe
Confidence            999854221                 14567889999999998874

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.64  E-value=0.29  Score=50.66  Aligned_cols=132  Identities=14%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCCcceEEEccCC------------CCC--CC-CCCcc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH--QWIGLDISQSMLNIALEREVEGDLLLGDMG------------QGL--GL-RPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~~~~~~~~D~~------------~~~--~~-~~~~f  114 (291)
                      ..++||+-||.|.++.-|...|.  .+.++|+++.+++.-+.+++...++..|+.            ...  .+ ..+.+
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~v  619 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDV  619 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTTC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCCCe
Confidence            46899999999999999998885  578999999999999999888777766641            111  11 24579


Q ss_pred             cEEEECCchhhhccccccC----CchHHHHHHHHHHHHHhccCCcEEEEEEcC----CChHHHHHHHHHHHHcCCCC
Q 043626          115 DGAISISAVQWLCNADKAS----HEPRLRLKAFFGSLYRCLARGARAVFQIYP----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~----~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~----~~~~~~~~i~~~~~~aGF~~  183 (291)
                      |+|+....-|.+..+.+..    ..++..+-.-+-.+...++|--.++=.+..    .....+..+...|...||..
T Consensus       620 Dll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~i~~~L~~lGY~v  696 (1002)
T 3swr_A          620 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC  696 (1002)
T ss_dssp             SEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCEE
T ss_pred             eEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCCEEEEeccHHHhccCcchHHHHHHHHHHhcCCeE
Confidence            9999887766654432211    111111222233455667886544433321    22346778888899999975

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.47  E-value=0.034  Score=50.28  Aligned_cols=96  Identities=14%  Similarity=0.070  Sum_probs=64.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG  116 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~  116 (291)
                      .++....+.+   +.+||-+|+|. |.....+++. |.+|+++|.++..++.+++..... ++ .+. +.+  . ..+|+
T Consensus       167 ~~l~~~~~~~---g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~-v~-~~~-~~~--~-~~~D~  237 (348)
T 3two_A          167 SPLKFSKVTK---GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKH-FY-TDP-KQC--K-EELDF  237 (348)
T ss_dssp             HHHHHTTCCT---TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSE-EE-SSG-GGC--C-SCEEE
T ss_pred             HHHHhcCCCC---CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCe-ec-CCH-HHH--h-cCCCE
Confidence            3445555555   77999999875 6666666654 789999999999999887754332 22 332 222  1 27999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+-...-.                 ..+..+.++|+++|++++.
T Consensus       238 vid~~g~~-----------------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          238 IISTIPTH-----------------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EEECCCSC-----------------CCHHHHHTTEEEEEEEEEC
T ss_pred             EEECCCcH-----------------HHHHHHHHHHhcCCEEEEE
Confidence            98542211                 2355778899999999875

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.44  E-value=0.018  Score=57.08  Aligned_cols=118  Identities=19%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHc------------C--CeEEEEeC---CHHHHHHHHhcCCc-------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSEN------------G--HQWIGLDI---SQSMLNIALEREVE-------------------   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~------------g--~~v~gvDi---s~~ml~~a~~~~~~-------------------   95 (291)
                      ..+|||+|-|+|.......+.            .  .++++++.   +...+..+....++                   
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            469999999999976655432            2  56999998   88887755443211                   


Q ss_pred             -----------ceEEEccCCCCCCCC----CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           96 -----------GDLLLGDMGQGLGLR----PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        96 -----------~~~~~~D~~~~~~~~----~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                 +++..+|+.+.++--    ...||+++....-        ...+|..=-..+|..++++++|||.+.  
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~--------p~~np~~w~~~~~~~l~~~~~~g~~~~--  216 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFA--------PAKNPDMWTQNLFNAMARLARPGGTLA--  216 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSC--------GGGCGGGSCHHHHHHHHHHEEEEEEEE--
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCC--------CcCChhhhhHHHHHHHHHHhCCCCEEE--
Confidence                       245666664433321    3679998864211        111232212588999999999999765  


Q ss_pred             EcCCChHHHHHHHHHHHHcCCCC
Q 043626          161 IYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +|...    ..+...+.++||..
T Consensus       217 t~~~~----~~vr~~L~~aGf~v  235 (676)
T 3ps9_A          217 TFTSA----GFVRRGLQDAGFTM  235 (676)
T ss_dssp             ESCCC----HHHHHHHHHHTCEE
T ss_pred             eccCc----HHHHHHHHhCCeEE
Confidence            33333    35677788999964

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.43  E-value=0.091  Score=50.08  Aligned_cols=131  Identities=9%  Similarity=-0.039  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCC----------------CC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGL----------------RP  111 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~----------------~~  111 (291)
                      ..+++|+-||.|.+..-+...| ..+.++|+++...+.-+.++   +...++.+|+.+..+.                ..
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~  167 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHI  167 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcC
Confidence            4689999999999999999888 45899999999999888887   4567788887432110                12


Q ss_pred             CcccEEEECCchhhhcccccc---------C--CchHHHHHHHHHHHHHhccCCcEEEEE-EcC----CChHHHHHHHHH
Q 043626          112 GVVDGAISISAVQWLCNADKA---------S--HEPRLRLKAFFGSLYRCLARGARAVFQ-IYP----ESVAQRELILGA  175 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~---------~--~~p~~~l~~~l~~l~~~LkpgG~lv~~-~~~----~~~~~~~~i~~~  175 (291)
                      ..+|+++..+.-|-+..+-..         .  .++...+-.-+-.+...++|. .+++. +-.    ........|...
T Consensus       168 ~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk-~fvlENV~gl~s~~~g~~f~~i~~~  246 (482)
T 3me5_A          168 PEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA-MFVLENVKNLKSHDKGKTFRIIMQT  246 (482)
T ss_dssp             CCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS-EEEEEEETTTTTGGGGHHHHHHHHH
T ss_pred             CCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc-EEEEeCcHHHhcccCCcHHHHHHHH
Confidence            468999987665544322110         0  122222322233344556785 34443 321    223467788899


Q ss_pred             HHHcCCCC
Q 043626          176 AMRAGFAG  183 (291)
Q Consensus       176 ~~~aGF~~  183 (291)
                      |...||..
T Consensus       247 L~~lGY~v  254 (482)
T 3me5_A          247 LDELGYDV  254 (482)
T ss_dssp             HHHTTEEE
T ss_pred             HhcCCcEE
Confidence            99999853

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.42  E-value=0.071  Score=48.20  Aligned_cols=101  Identities=17%  Similarity=0.112  Sum_probs=64.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC------CC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG------LR  110 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~------~~  110 (291)
                      .+++...+.+   +.+||-+|+|. |..+..++. .|..|+++|.++..++.+++.... .++..+-...+.      ..
T Consensus       159 ~al~~~~~~~---g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~~~~~~~~~~~~~~i~~~~~  234 (352)
T 1e3j_A          159 HACRRAGVQL---GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-VTLVVDPAKEEESSIIERIR  234 (352)
T ss_dssp             HHHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-EEEECCTTTSCHHHHHHHHH
T ss_pred             HHHHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-EEEcCcccccHHHHHHHHhc
Confidence            3445556665   67999999864 566666665 477899999999999988765433 222211001110      00


Q ss_pred             ---CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          111 ---PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       111 ---~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                         ...+|+|+.....                 ...+..+.++|+++|++++.
T Consensus       235 ~~~g~g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          235 SAIGDLPNVTIDCSGN-----------------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             HHSSSCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             cccCCCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence               2468999864321                 13566788999999998864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.34  E-value=0.12  Score=47.26  Aligned_cols=100  Identities=22%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---C----CCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---G----LGL  109 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~----~~~  109 (291)
                      +++...+.+   +.+||-+|+|. |.++..+++. |. .|+++|.++..++.+++.... .++...-.+   .    ...
T Consensus       174 ~l~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          174 GVDLSGIKA---GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT-ATVDPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             HHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-EEECTTSSCHHHHHHSTTSS
T ss_pred             HHHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-EEECCCCcCHHHHHHhhhhc
Confidence            446666665   77999999865 6666666654 76 899999999999988875432 122111000   0    012


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+.+|+|+-...-                 ...+..+.++|++||++++.
T Consensus       250 ~~gg~Dvvid~~G~-----------------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          250 VPGGVDVVIECAGV-----------------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             STTCEEEEEECSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cCCCCCEEEECCCC-----------------HHHHHHHHHHhccCCEEEEE
Confidence            23579999964221                 24577889999999999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.28  E-value=0.1  Score=47.24  Aligned_cols=102  Identities=16%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEcc------CCCCC--
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGD------MGQGL--  107 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D------~~~~~--  107 (291)
                      .+++...+.+   +.+||-+|+|. |..+..+++. |.. |+++|.++.-++.+++....+-....+      +.+.+  
T Consensus       170 ~~l~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          170 AGLQRAGVRL---GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HHHHHHTCCT---TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHH
T ss_pred             HHHHHcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHH
Confidence            3445566665   67899999865 6666666654 665 999999999999998762222112111      10000  


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ......+|+|+-...-                 ...+..+.++|++||++++.
T Consensus       247 ~t~g~g~Dvvid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          247 SFGGIEPAVALECTGV-----------------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             HTSSCCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HhCCCCCCEEEECCCC-----------------hHHHHHHHHHhcCCCEEEEE
Confidence            0113479999864221                 13567788999999999874

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.16  E-value=0.012  Score=52.47  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             ceEEEccCCCCCC-CCCCcccEEEECCchhhhccc-cccC-------Cc-hHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626           96 GDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNA-DKAS-------HE-PRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus        96 ~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~-~~~~-------~~-p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      +.++++|..+.+. +++++||+||++.......+- ....       +. -...+..++..++++|+|||.+++.+....
T Consensus        22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~  101 (297)
T 2zig_A           22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA  101 (297)
T ss_dssp             EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred             CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence            5688888755332 456899999998554321110 0000       00 011245678899999999999998764210


Q ss_pred             -----------hHHHHHHHHHHHHcCCCC
Q 043626          166 -----------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       166 -----------~~~~~~i~~~~~~aGF~~  183 (291)
                                 ......+...+..+||..
T Consensus       102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~  130 (297)
T 2zig_A          102 VARRRFGRHLVFPLHADIQVRCRKLGFDN  130 (297)
T ss_dssp             EECC----EEEECHHHHHHHHHHHTTCEE
T ss_pred             cccccCCcccccccHHHHHHHHHHcCCee
Confidence                       012245677788899864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.93  E-value=0.12  Score=47.46  Aligned_cols=114  Identities=14%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----C-CC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----G-LR  110 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~-~~  110 (291)
                      ++....+.+   +.+||-+|||. |.++..+++. |. .|+++|.++..++.+++...  +.+...-...+     . ..
T Consensus       177 al~~~~~~~---g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa--~~i~~~~~~~~~~~v~~~t~  251 (398)
T 1kol_A          177 GAVTAGVGP---GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF--EIADLSLDTPLHEQIAALLG  251 (398)
T ss_dssp             HHHHTTCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC--EEEETTSSSCHHHHHHHHHS
T ss_pred             HHHHcCCCC---CCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC--cEEccCCcchHHHHHHHHhC
Confidence            334445554   67999999876 7777777764 65 79999999999999977543  33322110100     0 01


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ...+|+|+-...-..........+++.  ....+..+.++|++||++++.
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEA--PATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBC--TTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCcccccccccccccc--hHHHHHHHHHHHhcCCEEEEe
Confidence            236999996543211000000000000  124677888999999998764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.85  E-value=0.024  Score=51.13  Aligned_cols=88  Identities=13%  Similarity=0.109  Sum_probs=54.5

Q ss_pred             ceEEEccCCCCCC-CCCCcccEEEECCchhhhcc---ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--C----
Q 043626           96 GDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCN---ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--S----  165 (291)
Q Consensus        96 ~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~---~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~----  165 (291)
                      +.++++|..+.+. ++.++||+|++........+   .+....+-...+..+|..++++|+|||.+++.+...  .    
T Consensus        15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~   94 (323)
T 1boo_A           15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA   94 (323)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred             ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence            5677888644333 45789999998754421100   000000111225778889999999999999976532  1    


Q ss_pred             --hHHHHHHHHHHHHcCCCC
Q 043626          166 --VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       166 --~~~~~~i~~~~~~aGF~~  183 (291)
                        ......+...+...||.-
T Consensus        95 ~~~~~~~~i~~~~~~~Gf~~  114 (323)
T 1boo_A           95 RSIYNFRVLIRMIDEVGFFL  114 (323)
T ss_dssp             ECCHHHHHHHHHHHTTCCEE
T ss_pred             cccchHHHHHHHHHhCCCEE
Confidence              234566777788899863

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.78  E-value=0.083  Score=47.73  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=65.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LR  110 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~  110 (291)
                      .+++...+.+   +.+||-+|+|. |..+..+++. |. .|+++|.++..++.+++.... .++..+-..   .+ . ..
T Consensus       157 ~al~~~~~~~---g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~v~~~t~  232 (352)
T 3fpc_A          157 HGAELANIKL---GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-DIINYKNGDIVEQILKATD  232 (352)
T ss_dssp             HHHHHTTCCT---TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-EEECGGGSCHHHHHHHHTT
T ss_pred             HHHHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-eEEcCCCcCHHHHHHHHcC
Confidence            3456666665   67899999875 6666777765 65 899999999999988876432 122111100   00 0 11


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ...+|+|+-...-                 ...+..+.++|++||++++.
T Consensus       233 g~g~D~v~d~~g~-----------------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          233 GKGVDKVVIAGGD-----------------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             TCCEEEEEECSSC-----------------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCCC-----------------hHHHHHHHHHHhcCCEEEEe
Confidence            2369999854221                 13567788999999998864

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.65  E-value=0.24  Score=49.85  Aligned_cols=52  Identities=13%  Similarity=0.070  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-------CeEEEEeCCHHHHHHHHhcCCcceEEEccC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-------HQWIGLDISQSMLNIALEREVEGDLLLGDM  103 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-------~~v~gvDis~~ml~~a~~~~~~~~~~~~D~  103 (291)
                      ..+|||+-||.|.++.-|...|       ..+.++|+++.+++.-+.|+++..+++.|+
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~~~~~~~di  270 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKA  270 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTTSEEEESCH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCCCceecCcH
Confidence            4689999999999988887665       467899999999999999987766666554

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=94.59  E-value=0.043  Score=47.93  Aligned_cols=93  Identities=16%  Similarity=0.234  Sum_probs=57.8

Q ss_pred             CCCCCCCcccEEEECCc----hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          106 GLGLRPGVVDGAISISA----VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~----l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      ++|-.-+.||+|+++.-    .||...    ..+=...+..+-.....+|+|||.+++.-|+.-+...+.+..++.+. |
T Consensus       204 G~P~~~grYDlVfvNv~TpyR~HHYQQ----CeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARk-F  278 (324)
T 3trk_A          204 GLPATLGRYDLVVINIHTPFRIHHYQQ----CVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRK-F  278 (324)
T ss_dssp             CCCGGGCCEEEEEEECCCCCCSSHHHH----HHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-E
T ss_pred             CCCCcCCceeEEEEecCCccccchHHH----HHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhh-h
Confidence            45544589999998732    333211    00111224555667788999999999999998877778777776665 7


Q ss_pred             CCcEEEeCCCCCCCCcEEEEEe
Q 043626          182 AGGVVVDYPHSSKSRKEFLVLT  203 (291)
Q Consensus       182 ~~~~~~~~p~~~~~~~~~l~l~  203 (291)
                      .-..+..-.....+...+++++
T Consensus       279 ~~~rv~~P~cv~snTEv~~vF~  300 (324)
T 3trk_A          279 RSSRALKPPCVTSNTEMFFLFS  300 (324)
T ss_dssp             EEEEEECCTTCCBTTCEEEEEE
T ss_pred             eeeeeecCccccccceEEEEEE
Confidence            6533333333444555555443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.53  E-value=0.099  Score=42.90  Aligned_cols=93  Identities=16%  Similarity=0.052  Sum_probs=58.0

Q ss_pred             hCCCCCCCCCeEEEEcCCC--chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----C-CCCCc
Q 043626           44 LALPDDGVPRLLLDIGCGS--GLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----G-LRPGV  113 (291)
Q Consensus        44 L~~~~~~~~~~VLDiGcGs--G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~-~~~~~  113 (291)
                      ..+.+   +.+||.+|++.  |.....++ ..|.+|+++|.++..++.+++...  +.+ .|.... .     . .....
T Consensus        34 ~~~~~---g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~--~~~-~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           34 GRLSP---GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV--EYV-GDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             SCCCT---TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC--SEE-EETTCSTHHHHHHHHTTTCC
T ss_pred             hCCCC---CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--CEE-eeCCcHHHHHHHHHHhCCCC
Confidence            34444   67999999533  44443333 458899999999998887765322  222 233221 0     0 11236


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+||.+...                  ..+..+.++|++||++++.
T Consensus       108 ~D~vi~~~g~------------------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          108 VDVVLNSLAG------------------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EEEEEECCCT------------------HHHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEECCch------------------HHHHHHHHHhccCCEEEEE
Confidence            9999865321                  3466788999999998864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.52  E-value=0.11  Score=47.48  Aligned_cols=98  Identities=18%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCCC-----CCCCC
Q 043626           42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-MGQGL-----GLRPG  112 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~~-----~~~~~  112 (291)
                      +...+.+   +.+||-+|+|. |..+..+++. |. .|+++|.++..++.+++.... .++... ....+     ....+
T Consensus       187 ~~~~~~~---g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          187 NTAKVEP---GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN-EFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTTCCCT---TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC-EEECGGGCSSCHHHHHHHHTTS
T ss_pred             hhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-EEEccccCchhHHHHHHHhcCC
Confidence            4444554   67899999864 6666666654 76 899999999999988765432 122111 00111     11234


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      .+|+|+-...-                 ...+..+.++|++| |++++.
T Consensus       263 g~D~vid~~g~-----------------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          263 GVDYSFECIGN-----------------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             CBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCEEEECCCC-----------------HHHHHHHHHHhhccCCEEEEE
Confidence            79999964221                 24577889999997 998874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.50  E-value=0.47  Score=36.68  Aligned_cols=109  Identities=14%  Similarity=0.026  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---CCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---LRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---~~~~~fD~Vis~~~l~~l  126 (291)
                      ..+|+=+|||. |. +...|.+.|+.|+++|.++..++.+.+.  ...++.+|....-.   .....+|+||+...-.  
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~--   82 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER--GVRAVLGNAANEEIMQLAHLECAKWLILTIPNG--   82 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--TCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH--
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--CCCEEECCCCCHHHHHhcCcccCCEEEEECCCh--
Confidence            35799999875 33 3445556789999999999998887763  45678888744211   1234788888642211  


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                                .  ....+....+.+.|+..++....  +....    ..+.+.|..
T Consensus        83 ----------~--~n~~~~~~a~~~~~~~~iiar~~--~~~~~----~~l~~~G~d  120 (140)
T 3fwz_A           83 ----------Y--EAGEIVASARAKNPDIEIIARAH--YDDEV----AYITERGAN  120 (140)
T ss_dssp             ----------H--HHHHHHHHHHHHCSSSEEEEEES--SHHHH----HHHHHTTCS
T ss_pred             ----------H--HHHHHHHHHHHHCCCCeEEEEEC--CHHHH----HHHHHCCCC
Confidence                      0  11223345666788888777652  22333    345566654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.44  E-value=0.05  Score=49.78  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-CCCCCcccE
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-GLRPGVVDG  116 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-~~~~~~fD~  116 (291)
                      ++..+.+.+   +.+||-+|+|. |.....+++ .|..|+++|.++..++.+++.... .++...-.+.. .. .+.+|+
T Consensus       186 al~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~-~~g~Dv  260 (369)
T 1uuf_A          186 PLRHWQAGP---GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-EVVNSRNADEMAAH-LKSFDF  260 (369)
T ss_dssp             HHHHTTCCT---TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-EEEETTCHHHHHTT-TTCEEE
T ss_pred             HHHhcCCCC---CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-EEeccccHHHHHHh-hcCCCE
Confidence            344445554   67999999875 666666665 478899999999988888764322 22221100000 11 157999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+....-.                 ..+..+.++|+++|++++.
T Consensus       261 vid~~g~~-----------------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          261 ILNTVAAP-----------------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             EEECCSSC-----------------CCHHHHHTTEEEEEEEEEC
T ss_pred             EEECCCCH-----------------HHHHHHHHHhccCCEEEEe
Confidence            98643211                 1345678899999998864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.16  E-value=0.29  Score=44.39  Aligned_cols=95  Identities=17%  Similarity=0.095  Sum_probs=61.5

Q ss_pred             HhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC------CCCCcc
Q 043626           43 LLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG------LRPGVV  114 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~------~~~~~f  114 (291)
                      ...+.+   +.+||-+|+|. |..+..+++. |..|+++|.++..++.+++.... .++..+- ..+.      .....+
T Consensus       184 ~~~~~~---g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~-~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          184 KGHLRA---GDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD-HGINRLE-EDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCCCT---TCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS-EEEETTT-SCHHHHHHHHHTTCCE
T ss_pred             hcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC-EEEcCCc-ccHHHHHHHHhCCCCc
Confidence            344444   77999999775 6666666654 78999999999999988775432 2222211 1110      112369


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+|+-...-                  ..+..+.++|+++|++++.
T Consensus       259 D~vid~~g~------------------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          259 DHILEIAGG------------------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEEEETTS------------------SCHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCCh------------------HHHHHHHHHhhcCCEEEEE
Confidence            999864321                  2355678899999999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.12  E-value=0.17  Score=46.11  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=62.2

Q ss_pred             HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCCC-----CCCCC
Q 043626           42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-MGQGL-----GLRPG  112 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~~-----~~~~~  112 (291)
                      +...+.+   +.+||-+|+|. |.....+++. |. .|+++|.++..++.+++.... .++..+ ....+     ....+
T Consensus       185 ~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          185 NTAKVTP---GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-ECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTTCCCT---TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHTTS
T ss_pred             hccCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-EEEecccccchHHHHHHHHhCC
Confidence            3444544   67999999865 6666666654 76 899999999999888765432 222211 00111     01124


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      .+|+|+-...-                 ...+..+.++|+++ |++++.
T Consensus       261 g~Dvvid~~g~-----------------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          261 GVDYAVECAGR-----------------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             CBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCEEEECCCC-----------------HHHHHHHHHHHhcCCCEEEEE
Confidence            79999854221                 14567788999999 998864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.07  E-value=0.16  Score=45.49  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=61.2

Q ss_pred             HHhCCCCCCCCCeEEEEcCC--CchhHHHHHH-cCCeEEEEeCCHHHHHHH-HhcCCcceEEEccCCCC---C-CCCCCc
Q 043626           42 ELLALPDDGVPRLLLDIGCG--SGLSGETLSE-NGHQWIGLDISQSMLNIA-LEREVEGDLLLGDMGQG---L-GLRPGV  113 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcG--sG~~~~~L~~-~g~~v~gvDis~~ml~~a-~~~~~~~~~~~~D~~~~---~-~~~~~~  113 (291)
                      +...+.+   +.+||-+||+  .|.....++. .|.+|+++|.++.-++.+ ++.... .++...-.+.   + ....+.
T Consensus       143 ~~~~~~~---g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          143 DVGQPKN---GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD-GAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             HTTCCCT---TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS-EEEETTTSCHHHHHHHHCTTC
T ss_pred             HhcCCCC---CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC-EEEECCCHHHHHHHHHhcCCC
Confidence            5556655   7799999983  3555555554 578999999999998888 443221 2222111010   0 011346


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+|+.+..-                  ..+..+.++|+++|++++.
T Consensus       219 ~d~vi~~~g~------------------~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          219 IDVFFDNVGG------------------EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEEEESSCH------------------HHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEECCCc------------------chHHHHHHHHhhCCEEEEE
Confidence            9999865321                  3566788999999998864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.03  E-value=0.33  Score=43.52  Aligned_cols=97  Identities=24%  Similarity=0.299  Sum_probs=62.3

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC------C
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR------P  111 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~------~  111 (291)
                      ++....+.+   +.+||-+|+|. |.....++. .|.+|+++|.++..++.+++...  +.+ .|..+. .+.      .
T Consensus       156 ~l~~~~~~~---g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa--~~~-~d~~~~-~~~~~~~~~~  228 (339)
T 1rjw_A          156 ALKVTGAKP---GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA--DLV-VNPLKE-DAAKFMKEKV  228 (339)
T ss_dssp             HHHHHTCCT---TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC--SEE-ECTTTS-CHHHHHHHHH
T ss_pred             HHHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC--CEE-ecCCCc-cHHHHHHHHh
Confidence            344445555   67999999963 555555554 47899999999999998876432  222 233211 100      0


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.+|+||.....                 ...+..+.++|+++|++++.
T Consensus       229 ~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          229 GGVHAAVVTAVS-----------------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             SSEEEEEESSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEe
Confidence            468998865321                 13567788999999998864

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.95  E-value=0.15  Score=46.48  Aligned_cols=91  Identities=15%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCCC-----CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-MGQGL-----GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~~-----~~~~~~fD~Vis~~~  122 (291)
                      +.+||-+|+|. |..+..+++. |. .|+++|.++..++.+++.... .++... ..+.+     ....+.+|+||-...
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT-DFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC-EEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc-eEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            67999999864 6666666654 76 899999999999888764332 222111 00111     011246899986422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      .                 ...+..+.++|+++ |++++.
T Consensus       272 ~-----------------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          272 N-----------------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             C-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             C-----------------HHHHHHHHHHhhcCCcEEEEE
Confidence            1                 14567788999999 998864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.94  E-value=0.18  Score=45.83  Aligned_cols=98  Identities=17%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCCC-----CCCCC
Q 043626           42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-MGQGL-----GLRPG  112 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~~-----~~~~~  112 (291)
                      +...+.+   +.+||-+|+|. |..+..+++. |. .|+++|.++..++.+++.... .++... ....+     ....+
T Consensus       184 ~~~~~~~---g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          184 NTAKLEP---GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-ECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTTCCCT---TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-EEECGGGCSSCHHHHHHHHTTS
T ss_pred             hhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-eEeccccccccHHHHHHHHhCC
Confidence            3344444   67999999864 5556666654 76 899999999988888765432 122111 00101     01124


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      .+|+|+-...-                 ...+..+.++|+++ |++++.
T Consensus       260 g~D~vid~~g~-----------------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          260 GVDYSFECIGN-----------------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             CBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCEEEECCCc-----------------HHHHHHHHHhhccCCcEEEEE
Confidence            79999864221                 14567788999999 998864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.91  E-value=0.2  Score=45.53  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=60.9

Q ss_pred             HhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCCC-----CCCCCc
Q 043626           43 LLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-MGQGL-----GLRPGV  113 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~~-----~~~~~~  113 (291)
                      ...+.+   +.+||-+|+|. |.....+++. |. .|+++|.++..++.+++.... .++..+ ....+     ....+.
T Consensus       186 ~~~~~~---g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          186 VAKVTQ---GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-ECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             TTCCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             ccCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc-eEecccccchhHHHHHHHHhCCC
Confidence            344444   67999999865 5666666654 76 899999999988888764332 222111 00101     011247


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      +|+|+-...-                 ...+..+.++|+++ |++++.
T Consensus       262 ~D~vid~~g~-----------------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          262 VDFSFEVIGR-----------------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             BSEEEECSCC-----------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CcEEEECCCC-----------------HHHHHHHHHHhhcCCcEEEEe
Confidence            9999854221                 14567788999999 998864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.90  E-value=0.13  Score=45.87  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=59.7

Q ss_pred             HHhCCCCCCCCCeEEEEcCC--CchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC--CC-----CCCC
Q 043626           42 ELLALPDDGVPRLLLDIGCG--SGLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ--GL-----GLRP  111 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcG--sG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~~-----~~~~  111 (291)
                      +...+..   +..||-.||+  .|.....++ ..|.+|+++|.++..++.+++...  +.+ .|..+  .+     ....
T Consensus       139 ~~~~~~~---g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~--~~~-~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          139 EVCGVKG---GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF--DAA-FNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             TTSCCCS---SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC--SEE-EETTSCSCHHHHHHHHCT
T ss_pred             HhhCCCC---CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC--cEE-EecCCHHHHHHHHHHHhC
Confidence            3344444   6799999983  344444444 458899999999998888854322  221 23322  10     0112


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.+|++|.+..-                  ..+..+.++|++||++++.
T Consensus       213 ~~~d~vi~~~g~------------------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          213 DGYDCYFDNVGG------------------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             TCEEEEEESSCH------------------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCCeEEEECCCh------------------HHHHHHHHHHhcCCEEEEE
Confidence            479999865331                  2356778999999998864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.87  E-value=0.22  Score=44.58  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             HHhCCCCCCCCCeEEEEcC--CCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC--CCC-----CCC
Q 043626           42 ELLALPDDGVPRLLLDIGC--GSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ--GLG-----LRP  111 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGc--GsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~~~-----~~~  111 (291)
                      +...+.+   +.+||-+||  |.|.....++. .|..|+++|.++..++.+++......++  |..+  .+.     ...
T Consensus       149 ~~~~~~~---g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~  223 (345)
T 2j3h_A          149 EVCSPKE---GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAF--NYKEESDLTAALKRCFP  223 (345)
T ss_dssp             TTSCCCT---TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEE--ETTSCSCSHHHHHHHCT
T ss_pred             HHhCCCC---CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEE--ecCCHHHHHHHHHHHhC
Confidence            3444554   679999997  34555555554 5889999999999988887433211222  3221  110     112


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.+|+||.+...                  ..+..+.++|++||++++.
T Consensus       224 ~~~d~vi~~~g~------------------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          224 NGIDIYFENVGG------------------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             TCEEEEEESSCH------------------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCCcEEEECCCH------------------HHHHHHHHHHhcCCEEEEE
Confidence            468999865332                  2466788999999998863

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=93.86  E-value=0.51  Score=41.11  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---------CCeEEEEe-----CCH----------------------HHHHHHHh---c
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---------GHQWIGLD-----ISQ----------------------SMLNIALE---R   92 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---------g~~v~gvD-----is~----------------------~ml~~a~~---~   92 (291)
                      +..|+|+||-.|.+...++..         ...++++|     ..+                      ..+....+   +
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999988887642         26899999     211                      11222111   1


Q ss_pred             ---C----CcceEEEccCCCCCC-----CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           93 ---E----VEGDLLLGDMGQGLG-----LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        93 ---~----~~~~~~~~D~~~~~~-----~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                         .    .++.++.+++.+.+|     .+.++||+|..-.-.          ..+   ....+..++..|+|||.+++.
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----------Y~~---t~~~le~~~p~l~~GGvIv~D  216 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----------YEP---TKAVLEAIRPYLTKGSIVAFD  216 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----------HHH---HHHHHHHHGGGEEEEEEEEES
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----------cch---HHHHHHHHHHHhCCCcEEEEc
Confidence               1    347888888765543     234579998864321          112   457788899999999999998


Q ss_pred             EcCC--ChHHHHHHHHHHHHcCCC
Q 043626          161 IYPE--SVAQRELILGAAMRAGFA  182 (291)
Q Consensus       161 ~~~~--~~~~~~~i~~~~~~aGF~  182 (291)
                      -|..  -+.....+.+.+...|..
T Consensus       217 D~~~~~w~G~~~A~~ef~~~~~~~  240 (257)
T 3tos_A          217 ELDNPKWPGENIAMRKVLGLDHAP  240 (257)
T ss_dssp             STTCTTCTHHHHHHHHHTCTTSSC
T ss_pred             CCCCCCChHHHHHHHHHHhhCCCe
Confidence            7632  234555566655555443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.78  E-value=0.098  Score=47.16  Aligned_cols=98  Identities=18%  Similarity=0.296  Sum_probs=61.8

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCc--hhHHHHH-Hc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----CC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSG--LSGETLS-EN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----GL  109 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG--~~~~~L~-~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~~  109 (291)
                      ++....+.+   +..||-+|+|+|  .....++ .. |..|+++|.++..++.+++.... .++  |..+. .     ..
T Consensus       162 ~l~~~~~~~---g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~-~~~--~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          162 AVRKASLDP---TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVI--NASMQDPLAEIRRI  235 (347)
T ss_dssp             HHHHTTCCT---TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEE--ETTTSCHHHHHHHH
T ss_pred             HHHhcCCCC---CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC-EEe--cCCCccHHHHHHHH
Confidence            344445554   679999999854  3443333 45 88999999999998888654322 122  22111 0     01


Q ss_pred             CC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .. +.+|+||....-                 ...+..+.++|+++|++++.
T Consensus       236 ~~~~~~d~vi~~~g~-----------------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          236 TESKGVDAVIDLNNS-----------------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             TTTSCEEEEEESCCC-----------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             hcCCCceEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            12 579999865332                 13566778999999998874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.74  E-value=0.25  Score=43.84  Aligned_cols=89  Identities=15%  Similarity=0.118  Sum_probs=58.0

Q ss_pred             eEEEEcC-C-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           54 LLLDIGC-G-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        54 ~VLDiGc-G-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      .||=+|+ | .|.....+++. |.+|++++.++.-++.+++.....-+-..+......+..+.+|+|+-...        
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g--------  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG--------  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC--------
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC--------
Confidence            4999997 3 46666666654 78999999999999888775433111111211111223457998875321        


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                ...+..+.++|+++|++++.
T Consensus       221 ----------~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          221 ----------DKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             ----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             ----------cHHHHHHHHHHhcCCEEEEE
Confidence                      12577888999999999874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.67  E-value=0.52  Score=42.72  Aligned_cols=89  Identities=13%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CCeEEEEc-CCC-chhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCc
Q 043626           52 PRLLLDIG-CGS-GLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiG-cGs-G~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~  122 (291)
                      +.+||=+| +|. |..+..+++.  |..|+++|.++.-++.+++.... .++  |..+.+     ....+.+|+|+-...
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad-~vi--~~~~~~~~~v~~~~~~g~Dvvid~~g  248 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH-HVI--DHSKPLAAEVAALGLGAPAFVFSTTH  248 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS-EEE--CTTSCHHHHHHTTCSCCEEEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC-EEE--eCCCCHHHHHHHhcCCCceEEEECCC
Confidence            66899998 554 7788888874  68999999999999998775432 122  111111     122457999886422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       -...+..+.++|+++|++++.
T Consensus       249 -----------------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          249 -----------------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -----------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             -----------------chhhHHHHHHHhcCCCEEEEE
Confidence                             124677889999999999864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=93.65  E-value=0.78  Score=48.84  Aligned_cols=130  Identities=14%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCCcceEEEccCC------------C----CCCCCCCc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH--QWIGLDISQSMLNIALEREVEGDLLLGDMG------------Q----GLGLRPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~~~~~~~~D~~------------~----~~~~~~~~  113 (291)
                      ..++||+-||.|.++.-|...|.  .+.++|+++.+++.-+.+++...++..|+.            .    .+| ..+.
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp-~~~~  929 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLP-QKGD  929 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTTSEEECSCHHHHHHHHTTTCSBCSSCCBCC-CTTT
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCCCcEeeccHHHHhHhhhccchhhhhhhhcc-ccCc
Confidence            46899999999999999999985  588999999999998888877666665532            1    111 1357


Q ss_pred             ccEEEECCchhhhccccccC----CchHHHHHHHHHHHHHhccCCcEEEEE-EcC----CChHHHHHHHHHHHHcCCCC
Q 043626          114 VDGAISISAVQWLCNADKAS----HEPRLRLKAFFGSLYRCLARGARAVFQ-IYP----ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~----~~p~~~l~~~l~~l~~~LkpgG~lv~~-~~~----~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +|+|+....-|.+..+.+..    ..+...+-.-+-.+...++|- .+++. +-.    ........+...|...||..
T Consensus       930 vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk-~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v 1007 (1330)
T 3av4_A          930 VEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR-FFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQC 1007 (1330)
T ss_dssp             CSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCS-EEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEE
T ss_pred             cceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCc-EEEEeccHHHhccCccHHHHHHHHHHHhcCCee
Confidence            89999887777665433211    112222222233455567886 34443 211    22345778888899999975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.55  E-value=0.051  Score=48.33  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=59.9

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEE
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGA  117 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~V  117 (291)
                      +++...+.+   +.+||-+|+|. |.....+++. |.+|++++ |+.-++.+++...  +.+..| .+.+   ...+|+|
T Consensus       134 al~~~~~~~---g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa--~~v~~d-~~~v---~~g~Dvv  203 (315)
T 3goh_A          134 AFEKIPLTK---QREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV--RHLYRE-PSQV---TQKYFAI  203 (315)
T ss_dssp             HHTTSCCCS---CCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE--EEEESS-GGGC---CSCEEEE
T ss_pred             HHhhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC--CEEEcC-HHHh---CCCccEE
Confidence            334444554   78999999954 6666666654 78999999 8888888876433  222224 2333   5679998


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +-...-                  ..+..+.++|+++|++++.
T Consensus       204 ~d~~g~------------------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          204 FDAVNS------------------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ECC-------------------------TTGGGEEEEEEEEEE
T ss_pred             EECCCc------------------hhHHHHHHHhcCCCEEEEE
Confidence            843211                  1124567899999998875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.41  E-value=0.11  Score=46.74  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=62.1

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCC--CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC------
Q 043626           39 RALELLALPDDGVPRLLLDIGCG--SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL------  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcG--sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~------  109 (291)
                      .++..+.+.+   +..||-+|++  .|.....++. .|..|+++|.++..++.+++...  +.+ .|..+.-.+      
T Consensus       160 ~~l~~~~~~~---g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~--~~~-~d~~~~~~~~~~~~~  233 (347)
T 2hcy_A          160 KALKSANLMA---GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG--EVF-IDFTKEKDIVGAVLK  233 (347)
T ss_dssp             HHHHTTTCCT---TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC--CEE-EETTTCSCHHHHHHH
T ss_pred             HHHHhcCCCC---CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC--ceE-EecCccHhHHHHHHH
Confidence            3444445544   6799999983  4555544444 58899999999888887766432  222 243211110      


Q ss_pred             -CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 -RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 -~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                       ..+.+|+||.+...                 ...+..+.++|+++|++++.
T Consensus       234 ~~~~~~D~vi~~~g~-----------------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          234 ATDGGAHGVINVSVS-----------------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             HHTSCEEEEEECSSC-----------------HHHHHHHTTSEEEEEEEEEC
T ss_pred             HhCCCCCEEEECCCc-----------------HHHHHHHHHHHhcCCEEEEE
Confidence             11268999876432                 14567788999999998864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.35  E-value=0.21  Score=45.44  Aligned_cols=91  Identities=20%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCCC-----CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-MGQGL-----GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~~-----~~~~~~fD~Vis~~~  122 (291)
                      +.+||-+|+|. |..+..+++. |. .|+++|.++..++.+++.... .++... ....+     ....+.+|+|+-...
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-DCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc-EEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            67999999864 6666666654 76 899999999988888764332 122111 00101     011236899985422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      -                 ...+..+.++|+++ |++++.
T Consensus       275 ~-----------------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          275 T-----------------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             C-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             C-----------------HHHHHHHHHHhhcCCCEEEEE
Confidence            1                 14567888999999 998863

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.31  E-value=1.4  Score=39.31  Aligned_cols=102  Identities=19%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCCc-hhHHHHHH-c-CCeEEEEeCCHHHHHHHHhcCCcceEEEcc--CCCCC-C-CCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGSG-LSGETLSE-N-GHQWIGLDISQSMLNIALEREVEGDLLLGD--MGQGL-G-LRP  111 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGsG-~~~~~L~~-~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D--~~~~~-~-~~~  111 (291)
                      .+++.....+   +.+||=+|+|++ .+...++. . +.+|+++|.++.-++.+++......+-..+  ..+.+ . ...
T Consensus       154 ~~l~~~~~~~---g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g  230 (348)
T 4eez_A          154 KAIKVSGVKP---GDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGG  230 (348)
T ss_dssp             HHHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTS
T ss_pred             eeecccCCCC---CCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCC
Confidence            3445555555   679999999874 34444443 4 589999999999998888765442111111  10000 0 112


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+|.++....-                 ...+....++|+++|++++.
T Consensus       231 ~g~d~~~~~~~~-----------------~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          231 LGVQSAIVCAVA-----------------RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             SCEEEEEECCSC-----------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCceEEEEeccC-----------------cchhheeheeecCCceEEEE
Confidence            245666643221                 24567788999999998873

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.27  E-value=0.078  Score=47.77  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-c--CCeEEEEeCCHHHHHHHHhcCCcceEEE----ccCCCCCCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-N--GHQWIGLDISQSMLNIALEREVEGDLLL----GDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~--g~~v~gvDis~~ml~~a~~~~~~~~~~~----~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +.+||-+|+|. |..+..+++ .  |..|+++|.|+..++.+++.... .++.    .|....+. ....+|+|+-....
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~-~g~g~D~vid~~g~  248 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-YVSEMKDAESLINKLT-DGLGASIAIDLVGT  248 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-EEECHHHHHHHHHHHH-TTCCEEEEEESSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-EEeccccchHHHHHhh-cCCCccEEEECCCC
Confidence            77999999964 555555554 5  78999999999999988764332 1221    11100111 12369999865321


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ...+..+.++|+++|++++.
T Consensus       249 -----------------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          249 -----------------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             -----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             -----------------hHHHHHHHHHhhcCCEEEEe
Confidence                             13567788999999998864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.16  E-value=0.087  Score=48.26  Aligned_cols=100  Identities=17%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             HHHHhC-CCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEcc------CCCCC-C
Q 043626           40 ALELLA-LPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGD------MGQGL-G  108 (291)
Q Consensus        40 ~lelL~-~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D------~~~~~-~  108 (291)
                      +++.+. +.+   +.+||-+|+|. |..+..+++. | .+|+++|.++..++.+++.... .++..+      +.+.+ .
T Consensus       186 al~~~~~~~~---g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~v~~  261 (380)
T 1vj0_A          186 AFDEYPESFA---GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-LTLNRRETSVEERRKAIMD  261 (380)
T ss_dssp             HHHTCSSCCB---TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHHH
T ss_pred             HHHhcCCCCC---CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc-EEEeccccCcchHHHHHHH
Confidence            344445 444   67999999764 5566666654 7 6999999999999988764332 222221      00000 0


Q ss_pred             C-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          109 L-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       109 ~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      . ....+|+||-....                 ...+..+.++|+++|++++.
T Consensus       262 ~~~g~g~Dvvid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          262 ITHGRGADFILEATGD-----------------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             HTTTSCEEEEEECSSC-----------------TTHHHHHHHHEEEEEEEEEC
T ss_pred             HhCCCCCcEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            1 12269999865321                 13466788999999998864

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.12  E-value=0.14  Score=45.88  Aligned_cols=97  Identities=20%  Similarity=0.082  Sum_probs=60.6

Q ss_pred             HHHhCCCCCCCCCeEEEEcCCC--chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----C-CCC
Q 043626           41 LELLALPDDGVPRLLLDIGCGS--GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----G-LRP  111 (291)
Q Consensus        41 lelL~~~~~~~~~~VLDiGcGs--G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~-~~~  111 (291)
                      .+...+.+   +.+||-+|||+  |..+..++. .|.+|+++|.++..++.+++.... .++...- ..+     . ...
T Consensus       137 ~~~~~~~~---g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~-~~~~~~~-~~~~~~~~~~~~~  211 (340)
T 3gms_A          137 TETLNLQR---NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA-YVIDTST-APLYETVMELTNG  211 (340)
T ss_dssp             HTTSCCCT---TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-EEEETTT-SCHHHHHHHHTTT
T ss_pred             HHhcccCC---CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc-EEEeCCc-ccHHHHHHHHhCC
Confidence            34455555   77999999974  555555555 489999999999888888775432 1222111 111     0 112


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+|+|+....-.                 . +..+..+|+++|++++.
T Consensus       212 ~g~Dvvid~~g~~-----------------~-~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          212 IGADAAIDSIGGP-----------------D-GNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             SCEEEEEESSCHH-----------------H-HHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEECCCCh-----------------h-HHHHHHHhcCCCEEEEE
Confidence            4799998653321                 1 22344899999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.10  E-value=0.098  Score=47.45  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=61.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCC-CCC-CCCCCcc
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMG-QGL-GLRPGVV  114 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~-~~~-~~~~~~f  114 (291)
                      .++....+.+   +.+||-+|+|. |.....+++ .|..|+++|.++..++.+++.... .++...-. +.. ... +.+
T Consensus       170 ~~l~~~~~~~---g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~-~v~~~~~~~~~~~~~~-~~~  244 (360)
T 1piw_A          170 SPLVRNGCGP---GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-HYIATLEEGDWGEKYF-DTF  244 (360)
T ss_dssp             HHHHHTTCST---TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-EEEEGGGTSCHHHHSC-SCE
T ss_pred             HHHHHcCCCC---CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCC-EEEcCcCchHHHHHhh-cCC
Confidence            3344455555   67999999854 555556665 478899999999888888764322 22222110 000 011 479


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+||.......               ...+..+.++|++||++++.
T Consensus       245 D~vid~~g~~~---------------~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          245 DLIVVCASSLT---------------DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEEEECCSCST---------------TCCTTTGGGGEEEEEEEEEC
T ss_pred             CEEEECCCCCc---------------HHHHHHHHHHhcCCCEEEEe
Confidence            99986533200               01234567889999998763

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.03  E-value=0.12  Score=46.94  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=59.5

Q ss_pred             HHHHhCCC-CCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626           40 ALELLALP-DDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG  116 (291)
Q Consensus        40 ~lelL~~~-~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~  116 (291)
                      ++....+. +   +.+||-+|+|. |..+..+++. |..|+++|.++..++.+.+....-.++..+-.+.+....+.+|+
T Consensus       171 ~l~~~~~~~~---g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~  247 (357)
T 2cf5_A          171 PLSHFGLKQP---GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDY  247 (357)
T ss_dssp             HHHHTSTTST---TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEE
T ss_pred             HHHhcCCCCC---CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCE
Confidence            34445555 4   67999999764 5555555543 78999999999888887733321122221100000001236899


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+-...-.                 ..+....++|+++|++++.
T Consensus       248 vid~~g~~-----------------~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          248 VIDTVPVH-----------------HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             EEECCCSC-----------------CCSHHHHTTEEEEEEEEEC
T ss_pred             EEECCCCh-----------------HHHHHHHHHhccCCEEEEe
Confidence            98643211                 1244567899999998864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=92.59  E-value=0.18  Score=45.92  Aligned_cols=102  Identities=17%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             HHHHHhCCC-CCCCCCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCccc
Q 043626           39 RALELLALP-DDGVPRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        39 ~~lelL~~~-~~~~~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      .++..+.+. +   +.+||-+|+|. |.....++. .|..|+++|.++..++.+.+....-.++..+-.+.+....+.+|
T Consensus       177 ~al~~~~~~~~---g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D  253 (366)
T 1yqd_A          177 SPLKYFGLDEP---GKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLD  253 (366)
T ss_dssp             HHHHHTTCCCT---TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEE
T ss_pred             HHHHhcCcCCC---CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCC
Confidence            344455555 4   67899999754 444455554 47899999999988887764332212222110000100114689


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+......                 ..+..+.++|+++|++++.
T Consensus       254 ~vid~~g~~-----------------~~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          254 GIIDTVSAV-----------------HPLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEECCSSC-----------------CCSHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCcH-----------------HHHHHHHHHHhcCCEEEEE
Confidence            998653321                 1234567889999998863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.42  E-value=0.42  Score=42.82  Aligned_cols=89  Identities=15%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-----C-CCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-----L-RPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-----~-~~~~fD~Vis~~~  122 (291)
                      +.+||-+|+|. |..+..+++.  +..|+++|.++.-++.+++.... .++..+  ..+.     . ....+|+|+-...
T Consensus       172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~-~~i~~~--~~~~~~v~~~t~g~g~d~v~d~~G  248 (345)
T 3jv7_A          172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD-AAVKSG--AGAADAIRELTGGQGATAVFDFVG  248 (345)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS-EEEECS--TTHHHHHHHHHGGGCEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC-EEEcCC--CcHHHHHHHHhCCCCCeEEEECCC
Confidence            67999999875 6666677654  58999999999999999875433 122211  1110     0 1226898885422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      -                 ...+..+.++|+++|++++.
T Consensus       249 ~-----------------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          249 A-----------------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             C-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             C-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            1                 24677889999999998864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=92.22  E-value=0.2  Score=46.55  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=35.2

Q ss_pred             CCeEEEEcCCCchhHHHHH-HcC---CeEEEEeCCHHHHHHHHhc
Q 043626           52 PRLLLDIGCGSGLSGETLS-ENG---HQWIGLDISQSMLNIALER   92 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~-~~g---~~v~gvDis~~ml~~a~~~   92 (291)
                      +..|+||||+.|..+..++ ..+   ..|+++|.++...+..+++
T Consensus       227 ~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n  271 (409)
T 2py6_A          227 SEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV  271 (409)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence            6799999999999999887 443   6899999999988887764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=91.98  E-value=0.42  Score=43.11  Aligned_cols=86  Identities=17%  Similarity=0.158  Sum_probs=57.2

Q ss_pred             CeEEEEcCCC-chhH-HHHH-Hc-CCe-EEEEeCCHH---HHHHHHhcCCcceEEEccCCCCCCCC-----CCcccEEEE
Q 043626           53 RLLLDIGCGS-GLSG-ETLS-EN-GHQ-WIGLDISQS---MLNIALEREVEGDLLLGDMGQGLGLR-----PGVVDGAIS  119 (291)
Q Consensus        53 ~~VLDiGcGs-G~~~-~~L~-~~-g~~-v~gvDis~~---ml~~a~~~~~~~~~~~~D~~~~~~~~-----~~~fD~Vis  119 (291)
                      .+||-+|+|. |..+ ..++ +. |.. |+++|.++.   .++.+++...  +.+  |..+. .+.     .+.+|+||-
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa--~~v--~~~~~-~~~~i~~~~gg~Dvvid  248 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA--TYV--DSRQT-PVEDVPDVYEQMDFIYE  248 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC--EEE--ETTTS-CGGGHHHHSCCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC--ccc--CCCcc-CHHHHHHhCCCCCEEEE
Confidence            7999999864 6666 6666 54 665 999999988   7888876432  333  33211 110     236899885


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ...-                 ...+..+.++|+++|++++.
T Consensus       249 ~~g~-----------------~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          249 ATGF-----------------PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             CSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCC-----------------hHHHHHHHHHHhcCCEEEEE
Confidence            4221                 13567788999999998874

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=91.89  E-value=0.39  Score=38.66  Aligned_cols=138  Identities=19%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL  109 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~  109 (291)
                      .|....+.++..+...    +.-|||+|-|+|..--.|.+.  +..++.+|-.-..  .-...-++-+++++|+.+.++.
T Consensus        25 aQR~~L~~a~~~v~~~----~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~--hp~~~P~~e~~ilGdi~~tL~~   98 (174)
T 3iht_A           25 SQRACLEHAIAQTAGL----SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS--HPDSTPPEAQLILGDIRETLPA   98 (174)
T ss_dssp             HHHHHHHHHHHHTTTC----CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC--CGGGCCCGGGEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC----CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc--CCCCCCchHheecccHHHHHHH
Confidence            4666666777776554    458999999999999999987  4789999841100  0000112246677766443332


Q ss_pred             C----CCcccEEEECCchhhhccccccCCchHHHH--HHHH-HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          110 R----PGVVDGAISISAVQWLCNADKASHEPRLRL--KAFF-GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       110 ~----~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l--~~~l-~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                      .    ....-+|.          .|...+++.+..  .+++ .-+..+|.|||.++-..-                ..|.
T Consensus        99 ~~~r~g~~a~LaH----------aD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p----------------l~~~  152 (174)
T 3iht_A           99 TLERFGATASLVH----------ADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR----------------MYFE  152 (174)
T ss_dssp             HHHHHCSCEEEEE----------ECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC----------------CCCS
T ss_pred             HHHhcCCceEEEE----------eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc----------------cCCC
Confidence            1    11222222          222233333322  2222 245688999998886431                1133


Q ss_pred             CcEEEeCCCCCCCCcEEEE
Q 043626          183 GGVVVDYPHSSKSRKEFLV  201 (291)
Q Consensus       183 ~~~~~~~p~~~~~~~~~l~  201 (291)
                      +-.-+.-|.......||++
T Consensus       153 ~l~~lplP~gi~~gRyf~Y  171 (174)
T 3iht_A          153 GLEELPLPPGAVVGRCFIY  171 (174)
T ss_dssp             SCEEECCCTTCCTTTCEEE
T ss_pred             CcccCCCCCCCCCCceEEE
Confidence            3344566666656566554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.63  E-value=0.91  Score=40.65  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC-CC-----C-CCCCcccEEEECC
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ-GL-----G-LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~-~~-----~-~~~~~fD~Vis~~  121 (291)
                      +.+||-+|+|. |.....++. .|. +|+++|.++..++.+++.... .++  |... .+     . .....+|+||...
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~-~~~--~~~~~~~~~~v~~~~~g~g~D~vid~~  244 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD-YVI--NPFEEDVVKEVMDITDGNGVDVFLEFS  244 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS-EEE--CTTTSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-EEE--CCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence            77999999953 555555554 477 999999999998888764322 122  2211 10     0 0123699998653


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..                 ...+..+.++|+++|++++.
T Consensus       245 g~-----------------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          245 GA-----------------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             CC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            21                 14567788999999998864

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=91.62  E-value=1.2  Score=40.99  Aligned_cols=43  Identities=14%  Similarity=0.052  Sum_probs=33.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---------CCeEEEEeCCHHHHHHHHhcCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---------GHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---------g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      +..|+|+|.|+|.+..-+...         ...++.||+|+...+.-+++..
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            568999999999987766532         1489999999988876665543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.61  E-value=2.7  Score=33.59  Aligned_cols=94  Identities=13%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC--C-CC-CCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGS-GL-SGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG--L-GL-RPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~--~-~~-~~~~fD~Vis~~~l~  124 (291)
                      ..+|+=+|||. |. ++..|.+. |+.|+++|.++..++.+...  .+.++.+|..+.  + .. ....+|+||....-.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~  116 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE--GRNVISGDATDPDFWERILDTGHVKLVLLAMPHH  116 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT--TCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC--CCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence            45899998874 33 34555667 89999999999988777653  355677776431  1 11 234689888642111


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                                  .  ....+-.+.+.+.|++.++...
T Consensus       117 ------------~--~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          117 ------------Q--GNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             ------------H--HHHHHHHHHHHTTCCSEEEEEE
T ss_pred             ------------H--HHHHHHHHHHHHCCCCEEEEEE
Confidence                        0  1122334556667788887765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.23  E-value=0.95  Score=40.54  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             CCeEEEEc-CCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCch
Q 043626           52 PRLLLDIG-CGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiG-cGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l  123 (291)
                      +.+||-+| +|. |..+..++. .|.+|+++|.++.-++.+++.... .++  |..+.+     ......+|+|+.... 
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~vi--~~~~~~~~~~~~~~~~g~Dvv~d~~g-  226 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD-IVL--NHKESLLNQFKTQGIELVDYVFCTFN-  226 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS-EEE--CTTSCHHHHHHHHTCCCEEEEEESSC-
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc-EEE--ECCccHHHHHHHhCCCCccEEEECCC-
Confidence            67899984 443 555555555 478999999999999988875432 122  111111     012346999886422 


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                                      -...+..+.++|+++|+++.
T Consensus       227 ----------------~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          227 ----------------TDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             ----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ----------------chHHHHHHHHHhccCCEEEE
Confidence                            12456788899999999975

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=91.18  E-value=0.4  Score=43.00  Aligned_cols=93  Identities=18%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             HhCCCCCCCCCeEEEEcCCC-chhHHHHHH-cCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC-CCC-----CCCCc
Q 043626           43 LLALPDDGVPRLLLDIGCGS-GLSGETLSE-NGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ-GLG-----LRPGV  113 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGs-G~~~~~L~~-~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~-~~~-----~~~~~  113 (291)
                      ...+ +   +.+||-+|+|. |.....+++ .|. .|+++|.++..++.+++. .. .++  |..+ .+.     .....
T Consensus       160 ~~~~-~---g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~-~v~--~~~~~~~~~~~~~~~~~g  231 (343)
T 2dq4_A          160 GSGV-S---GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD-RLV--NPLEEDLLEVVRRVTGSG  231 (343)
T ss_dssp             TTCC-T---TSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS-EEE--CTTTSCHHHHHHHHHSSC
T ss_pred             hCCC-C---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH-hcc--CcCccCHHHHHHHhcCCC
Confidence            4455 4   77999999854 555555555 477 899999999888877653 21 222  2211 100     00246


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+|+....-                 ...+..+.++|+++|++++.
T Consensus       232 ~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          232 VEVLLEFSGN-----------------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEEEEECSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            8999864221                 14567788999999998864

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=91.05  E-value=0.54  Score=45.24  Aligned_cols=92  Identities=17%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             CCCCCCCcccEEEECC----chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          106 GLGLRPGVVDGAISIS----AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~----~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      ++|- .+.||+|+.+-    -.||...    ..+=.-.+..+-.....+|+|||.+++.-|+.-+...+.+...+.+. |
T Consensus       215 G~p~-~~ryDlvfvn~~t~yr~HHyqQ----CeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRk-F  288 (670)
T 4gua_A          215 GFPP-QARYDLVFINIGTKYRNHHFQQ----CEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARK-F  288 (670)
T ss_dssp             CCCC-CCCEEEEEECCCCCCCSCHHHH----HHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHT-E
T ss_pred             CCCC-CCcccEEEEecCCCcccchHHH----HHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhh-e
Confidence            4564 47999999873    2333311    00111114555667789999999999999998877777777776665 6


Q ss_pred             CCcEEEeCCCCCCCCcEEEEEe
Q 043626          182 AGGVVVDYPHSSKSRKEFLVLT  203 (291)
Q Consensus       182 ~~~~~~~~p~~~~~~~~~l~l~  203 (291)
                      .-..+..-.....+...++++.
T Consensus       289 ~~~rv~~p~~~~snTEv~~~f~  310 (670)
T 4gua_A          289 VRVSAARPDCVSSNTEMYLIFR  310 (670)
T ss_dssp             EEEEEECCTTCSBTTCEEEEEE
T ss_pred             eeeeeeCCCccccCceEEEEEE
Confidence            6533333333344445544443

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=90.89  E-value=8.7  Score=34.49  Aligned_cols=99  Identities=8%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhc----------------------------CCcceEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALER----------------------------EVEGDLLL  100 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~----------------------------~~~~~~~~  100 (291)
                      ...|+-+|||.=.....|...   +..|+=||. |..++.=++.                            .....++.
T Consensus        91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            568999999998888888764   478999998 4444321111                            12246777


Q ss_pred             ccCCCC---------CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          101 GDMGQG---------LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       101 ~D~~~~---------~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+.+.         ..+.+...=++|+-.++.|+.         ......+|+.+.....+|..+++.
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~---------~~~~~~ll~~ia~~f~~~~~i~yE  229 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMT---------PEQSANLLKWAANSFERAMFINYE  229 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSC---------HHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCC---------HHHHHHHHHHHHHhCCCceEEEEe
Confidence            887541         124455666888889999983         344778888888877655555443

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.83  E-value=0.88  Score=40.86  Aligned_cols=96  Identities=9%  Similarity=0.024  Sum_probs=59.6

Q ss_pred             HHhCCCCCCCC--CeEEEEcCCC--chhHHHHH-HcCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----CC
Q 043626           42 ELLALPDDGVP--RLLLDIGCGS--GLSGETLS-ENGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----GL  109 (291)
Q Consensus        42 elL~~~~~~~~--~~VLDiGcGs--G~~~~~L~-~~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~~  109 (291)
                      +...+..   +  .+||-.|++.  |.....++ ..|. .|+++|.++..++.+.+... .+.+ .|..+. +     ..
T Consensus       152 ~~~~~~~---g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g-~~~~-~d~~~~~~~~~~~~~  226 (357)
T 2zb4_A          152 EKGHITA---GSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG-FDAA-INYKKDNVAEQLRES  226 (357)
T ss_dssp             HHSCCCT---TSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC-CSEE-EETTTSCHHHHHHHH
T ss_pred             HhcCCCC---CCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-CceE-EecCchHHHHHHHHh
Confidence            4555554   6  7999999833  44444444 3577 99999999988888776332 1221 232111 0     01


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+.+|+||.+..-                  ..+..+.++|+++|++++.
T Consensus       227 ~~~~~d~vi~~~G~------------------~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          227 CPAGVDVYFDNVGG------------------NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             CTTCEEEEEESCCH------------------HHHHHHHHTEEEEEEEEEC
T ss_pred             cCCCCCEEEECCCH------------------HHHHHHHHHhccCcEEEEE
Confidence            12268998865331                  3466788999999998863

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.78  E-value=1.4  Score=39.30  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=62.1

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC------C
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG------L  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~------~  109 (291)
                      .++......+   +.+||=+|+|. |.++..+++. | ..++++|.++.-++.+++.... .++...- ....      .
T Consensus       151 ~~~~~~~~~~---g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~-~~i~~~~-~~~~~~~~~~~  225 (346)
T 4a2c_A          151 HAFHLAQGCE---NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM-QTFNSSE-MSAPQMQSVLR  225 (346)
T ss_dssp             HHHHHTTCCT---TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-EEEETTT-SCHHHHHHHHG
T ss_pred             HHHHHhccCC---CCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe-EEEeCCC-CCHHHHHHhhc
Confidence            3445555555   77999999875 4455555544 6 5678999999999998876443 2222110 1000      0


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ....+|+|+.....                 ...+....++|++||++++.
T Consensus       226 ~~~g~d~v~d~~G~-----------------~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          226 ELRFNQLILETAGV-----------------PQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             GGCSSEEEEECSCS-----------------HHHHHHHHHHCCTTCEEEEC
T ss_pred             ccCCcccccccccc-----------------cchhhhhhheecCCeEEEEE
Confidence            12356777754221                 24567788999999999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=90.77  E-value=0.3  Score=43.42  Aligned_cols=88  Identities=11%  Similarity=0.082  Sum_probs=54.2

Q ss_pred             eEEEEcC--CCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEc-cC-CCCC-CCCCCcccEEEECCchhhhc
Q 043626           54 LLLDIGC--GSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLG-DM-GQGL-GLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        54 ~VLDiGc--GsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~-~~~~-~~~~~~fD~Vis~~~l~~l~  127 (291)
                      .||-+|+  |.|.....+++ .|..+++++.++.-++.+++.... .++.. +. ...+ ....+.+|+|+-...-    
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~-~~i~~~~~~~~~~~~~~~~~~d~vid~~g~----  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK-EVLAREDVMAERIRPLDKQRWAAAVDPVGG----  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS-EEEECC---------CCSCCEEEEEECSTT----
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc-EEEecCCcHHHHHHHhcCCcccEEEECCcH----
Confidence            7999997  34666666665 478899999998888888764322 12211 11 0101 1223468998854221    


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                    ..+..+.++|+++|++++.
T Consensus       227 --------------~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          227 --------------RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             --------------TTHHHHHHTEEEEEEEEEC
T ss_pred             --------------HHHHHHHHhhccCCEEEEE
Confidence                          1355678899999998864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=90.74  E-value=0.43  Score=42.44  Aligned_cols=90  Identities=11%  Similarity=-0.087  Sum_probs=57.6

Q ss_pred             CCeEEEEcC-C-CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C--CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGC-G-SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L--GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGc-G-sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~--~~~~~~fD~Vis~~~l  123 (291)
                      +.+||-+|+ | .|.....++. .|.+|+++|.++..++.+++.... ..+..+-...   +  ......+|+|+....-
T Consensus       141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~-~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          141 GEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW-ETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC-EEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            679999983 3 3666655555 488999999999999988765432 2222111010   0  0112469999865332


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                        ..+..+.++|++||++++.
T Consensus       220 ------------------~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          220 ------------------DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             ------------------GGHHHHHTTEEEEEEEEEC
T ss_pred             ------------------HHHHHHHHHhcCCCEEEEE
Confidence                              2355678899999999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.49  E-value=0.67  Score=41.77  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             HhCCCCCCCCCeEEEEcCC--CchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C------CCCCC
Q 043626           43 LLALPDDGVPRLLLDIGCG--SGLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L------GLRPG  112 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcG--sG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~------~~~~~  112 (291)
                      ...+.+   +..||-+|++  .|.....++ ..|..|+++|.++..++.+++.... .++  |..+. +      .....
T Consensus       165 ~~~~~~---g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~~~--d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          165 SACVKA---GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH-EVF--NHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             TSCCCT---TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEE--ETTSTTHHHHHHHHHCTT
T ss_pred             hhCCCC---cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC-EEE--eCCCchHHHHHHHHcCCC
Confidence            334444   6799999973  344444444 4588999999999988877654322 122  22111 0      01123


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+|+||.+..-                  ..+....++|+++|++++.
T Consensus       239 ~~D~vi~~~G~------------------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          239 GIDIIIEMLAN------------------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CEEEEEESCHH------------------HHHHHHHHHEEEEEEEEEC
T ss_pred             CcEEEEECCCh------------------HHHHHHHHhccCCCEEEEE
Confidence            68999865321                  2356678999999998864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.37  E-value=0.56  Score=41.76  Aligned_cols=90  Identities=20%  Similarity=0.119  Sum_probs=57.3

Q ss_pred             CCeEEEEcCC--CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C-C-CCCCcccEEEECCch
Q 043626           52 PRLLLDIGCG--SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L-G-LRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcG--sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~-~-~~~~~fD~Vis~~~l  123 (291)
                      +.+||-+|++  .|..+..++. .|.+|+++|.++..++.+++.... .++..+-...   + . .....+|+|+....-
T Consensus       149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          149 GDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE-YLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-EEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            6799999953  3555555554 478999999999999988775422 2222211010   0 0 113469999865332


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                        ..+..+.++|++||++++.
T Consensus       228 ------------------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          228 ------------------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             ------------------GGHHHHHHHEEEEEEEEEC
T ss_pred             ------------------HHHHHHHHHhccCCEEEEE
Confidence                              2356678899999998874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.31  E-value=2.1  Score=39.15  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----C-CCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----G-LRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~-~~~~~fD~Vis~~~  122 (291)
                      +.+||=+|+|. |..+..+++. |. .|+++|.++.-++.+++.... .++..+- ..+     . .....+|+|+-...
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~-~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-HVIDPTK-ENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-EEECTTT-SCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-EEEcCCC-CCHHHHHHHHhCCCCCCEEEECCC
Confidence            67999999864 5566666654 76 999999999999998876432 1221110 110     0 11236999985422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      -.            ...+..++..+.++++++|++++.
T Consensus       292 ~~------------~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          292 VP------------QLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CH------------HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             Cc------------HHHHHHHHHHHHhccCCCcEEEEe
Confidence            11            011233334444555999999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.31  E-value=0.67  Score=41.46  Aligned_cols=88  Identities=14%  Similarity=0.177  Sum_probs=57.7

Q ss_pred             CCeEEEEcC--CCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----C-CCCCcccEEEECC
Q 043626           52 PRLLLDIGC--GSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----G-LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGc--GsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~-~~~~~fD~Vis~~  121 (291)
                      +.+||-+|+  |.|.....++. .|..|+++|.++..++.+++.... .++  |.... +     . .....+|+||...
T Consensus       167 g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~-~~~--d~~~~~~~~~~~~~~~~~~~d~vi~~~  243 (343)
T 2eih_A          167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGAD-ETV--NYTHPDWPKEVRRLTGGKGADKVVDHT  243 (343)
T ss_dssp             TCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS-EEE--ETTSTTHHHHHHHHTTTTCEEEEEESS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC-EEE--cCCcccHHHHHHHHhCCCCceEEEECC
Confidence            679999998  44665555554 578999999999998888754322 122  32211 0     0 1124699999764


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      . .                 ..+..+.++|+++|++++.
T Consensus       244 g-~-----------------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          244 G-A-----------------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             C-S-----------------SSHHHHHHHEEEEEEEEES
T ss_pred             C-H-----------------HHHHHHHHhhccCCEEEEE
Confidence            3 1                 1355678899999998863

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=90.29  E-value=1.4  Score=39.69  Aligned_cols=96  Identities=20%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             HhCCCCCCCCCeEEEEcC--CCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-CCCCCccc
Q 043626           43 LLALPDDGVPRLLLDIGC--GSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-GLRPGVVD  115 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGc--GsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~~~~~~fD  115 (291)
                      ...+.+   +.+||-+|+  |.|.....++. .|..|+++|.++..++.+++.... .++..+-.+   .+ ......+|
T Consensus       158 ~~~~~~---g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~-~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          158 LGGLSE---GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCD-RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             HTCCCT---TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             hcCCCC---CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCc-EEEecCChhHHHHHHHhcCCCCC
Confidence            334554   679999993  34666666665 478999999999988888764322 222211100   00 01124689


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +||....-                  ..+..+.++|+++|++++.
T Consensus       234 ~vid~~g~------------------~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          234 VVYESVGG------------------AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EEEECSCT------------------HHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCH------------------HHHHHHHHHHhcCCEEEEE
Confidence            99865321                  3466788999999998864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.14  E-value=0.5  Score=41.97  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             eEEEEcC-C-CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEc-cC-CCCC-CCCCCcccEEEECCchhhhc
Q 043626           54 LLLDIGC-G-SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLG-DM-GQGL-GLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        54 ~VLDiGc-G-sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~-~~~~-~~~~~~fD~Vis~~~l~~l~  127 (291)
                      .||-+|| | .|.....++. .|..+++++.++.-++.+++.... .++.. +. ...+ ....+.+|+|+-...-    
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~-~v~~~~~~~~~~~~~~~~~~~d~vid~~g~----  227 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS-EVISREDVYDGTLKALSKQQWQGAVDPVGG----  227 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS-EEEEHHHHCSSCCCSSCCCCEEEEEESCCT----
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-EEEECCCchHHHHHHhhcCCccEEEECCcH----
Confidence            7999998 3 3555555555 478899999998877877664322 12211 11 0111 1223469998854221    


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                    ..+....++|++||++++.
T Consensus       228 --------------~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          228 --------------KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             --------------HHHHHHHTTEEEEEEEEEC
T ss_pred             --------------HHHHHHHHhhcCCCEEEEE
Confidence                          2466788999999998864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.88  E-value=0.72  Score=40.89  Aligned_cols=88  Identities=16%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             CCeEEEEcCC--CchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----C-CCCCcccEEEECC
Q 043626           52 PRLLLDIGCG--SGLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----G-LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcG--sG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~-~~~~~fD~Vis~~  121 (291)
                      +.+||-+|++  .|.....++ ..|..|+++|.++..++.+++.... .++  |..+. .     . .....+|+||.+.
T Consensus       141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~-~~~--~~~~~~~~~~~~~~~~~~~~D~vi~~~  217 (327)
T 1qor_A          141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-QVI--NYREEDLVERLKEITGGKKVRVVYDSV  217 (327)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-EEE--ETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC-EEE--ECCCccHHHHHHHHhCCCCceEEEECC
Confidence            6799999943  344444444 3589999999999988888764322 122  22111 0     0 1123699999764


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .-                  ..+..+.++|+++|++++.
T Consensus       218 g~------------------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          218 GR------------------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CG------------------GGHHHHHHTEEEEEEEEEC
T ss_pred             ch------------------HHHHHHHHHhcCCCEEEEE
Confidence            31                  2356778999999998864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.68  E-value=2.6  Score=31.56  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~~~l~~l  126 (291)
                      .++|+=+|||. |. ++..|.+.|+.++++|.++..++.+.... .+.++.+|....-   ......+|+|+....... 
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~-   81 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-DALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE-   81 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-SSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-CcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch-
Confidence            45788888754 22 23444556899999999998877665432 3456667753210   011346898886522111 


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                                   ....+..+.+.+.++ .+++..
T Consensus        82 -------------~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           82 -------------VNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             -------------HHHHHHHHHHHTTCC-CEEEEC
T ss_pred             -------------HHHHHHHHHHHcCCC-EEEEEe
Confidence                         223444556667775 444433

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=89.60  E-value=1.1  Score=39.57  Aligned_cols=98  Identities=17%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             HHHHHhCCCCCCCCCeEEEEc-CCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-CCCCCCcc
Q 043626           39 RALELLALPDDGVPRLLLDIG-CGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-LGLRPGVV  114 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiG-cGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~~~~~~~f  114 (291)
                      .+++...+.+   +.+||=+| +|. |..+..+++. |.++++++ ++..++.+++.... .++..+- .. +.-.-..+
T Consensus       143 ~al~~~~~~~---g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~-~~i~~~~-~~~~~~~~~g~  216 (321)
T 3tqh_A          143 QALNQAEVKQ---GDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE-QCINYHE-EDFLLAISTPV  216 (321)
T ss_dssp             HHHHHTTCCT---TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS-EEEETTT-SCHHHHCCSCE
T ss_pred             HHHHhcCCCC---CCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC-EEEeCCC-cchhhhhccCC
Confidence            3445556655   77999986 554 6666666654 78999997 55557777765432 2222211 11 11111468


Q ss_pred             cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+|+-...-                  ..+....++|+++|++++.
T Consensus       217 D~v~d~~g~------------------~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          217 DAVIDLVGG------------------DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEEESSCH------------------HHHHHHGGGEEEEEEEEEC
T ss_pred             CEEEECCCc------------------HHHHHHHHhccCCCEEEEe
Confidence            998854221                  1236788999999998864

>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*

Probab=89.14  E-value=1.5  Score=38.83  Aligned_cols=55  Identities=22%  Similarity=0.164  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHHhCC---CCCCCCCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCH
Q 043626           29 IIDIQAKLSERALELLAL---PDDGVPRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQ   83 (291)
Q Consensus        29 ~~~iq~~~~~~~lelL~~---~~~~~~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~   83 (291)
                      ..+.|..+.-.-++.|..   .....+..|+=+|||.|.....|+++    +  ..|+++|..+
T Consensus        35 ~h~GQrKLLlsEIeFLt~~~~~~~~~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap   98 (307)
T 3mag_A           35 PYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRH   98 (307)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTCSTTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred             CChhHHHHHHHHHHHHHHHHhcCCCCCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCc
Confidence            566788877777777732   11111569999999999999888875    2  5888888744

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.91  E-value=0.94  Score=38.68  Aligned_cols=106  Identities=18%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCC---------CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGL---------RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~---------~~~~fD~Vi  118 (291)
                      +..+|=.|++.|.   +...|++.|.+|+.+|.++..++...+.. ..+.++.+|+.+.-..         .-+.+|++|
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv   87 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLH   87 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            5688888877664   44556677999999999998776665443 3467888898542110         124789999


Q ss_pred             ECCchhhhccccccCCchHHHH-----------HHHHHHHHHhccCCcEEEEE
Q 043626          119 SISAVQWLCNADKASHEPRLRL-----------KAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l-----------~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+..+.......   ..+...+           ..+++.+...|+.+|.+++.
T Consensus        88 ~nAg~~~~~~~~---~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           88 INAGVSELEPFD---QVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             ECCCCCCCBCGG---GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ECCCCCCCCChh---hCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            876553321100   0111112           23344555666778888764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.85  E-value=3.9  Score=37.86  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~~~l~~l  126 (291)
                      ..+|+=+|||. |. ++..|.+.|+.|+++|.++..++.++..  ...++.+|....-   ...-...|+||+...    
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--g~~vi~GDat~~~~L~~agi~~A~~viv~~~----   77 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--GMKVFYGDATRMDLLESAGAAKAEVLINAID----   77 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--TCCCEESCTTCHHHHHHTTTTTCSEEEECCS----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--CCeEEEcCCCCHHHHHhcCCCccCEEEECCC----
Confidence            45788888865 32 3344456689999999999999888754  3567888885521   112356888886421    


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                       +       +.  ....+..+.+.+.|...++..
T Consensus        78 -~-------~~--~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           78 -D-------PQ--TNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             -S-------HH--HHHHHHHHHHHHCTTCEEEEE
T ss_pred             -C-------hH--HHHHHHHHHHHhCCCCeEEEE
Confidence             1       11  234455667777888777773

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=88.77  E-value=1.3  Score=39.68  Aligned_cols=93  Identities=12%  Similarity=0.028  Sum_probs=59.8

Q ss_pred             HHhCCCCCCCCCeEEEEcC-C-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC------CCCC
Q 043626           42 ELLALPDDGVPRLLLDIGC-G-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG------LRPG  112 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGc-G-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~------~~~~  112 (291)
                      +...+.+   +.+||-+|+ | .|..+..++.. |..|+++ .++.-++.+++....  .+. +- ..+.      ....
T Consensus       144 ~~~~~~~---g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~--~i~-~~-~~~~~~~~~~~~~~  215 (343)
T 3gaz_A          144 DRAQVQD---GQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGAT--PID-AS-REPEDYAAEHTAGQ  215 (343)
T ss_dssp             TTTCCCT---TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSE--EEE-TT-SCHHHHHHHHHTTS
T ss_pred             HhcCCCC---CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCC--Eec-cC-CCHHHHHHHHhcCC
Confidence            4444544   779999995 3 36666666654 7899999 889888888775433  232 21 1110      1124


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+|+|+-...-                  ..+..+..+|+++|++++.
T Consensus       216 g~D~vid~~g~------------------~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          216 GFDLVYDTLGG------------------PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             CEEEEEESSCT------------------HHHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCCc------------------HHHHHHHHHHhcCCeEEEE
Confidence            69998864221                  3466788899999998864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=88.72  E-value=2.5  Score=35.10  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCCchhHHHH----HHcCCeEEEEeCCHHHHHHHHhcCCcc-eEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETL----SENGHQWIGLDISQSMLNIALEREVEG-DLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L----~~~g~~v~gvDis~~ml~~a~~~~~~~-~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+||=.|+ +|.+|..+    ++.|++|++++-++..+......  .+ .++.+|+.+.+.-.-+.+|+||.+....
T Consensus        21 ~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           21 GMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             CCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            568998885 45555444    45689999999988766544332  46 7889998632322234789999876543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=88.67  E-value=0.75  Score=39.66  Aligned_cols=41  Identities=7%  Similarity=-0.007  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          140 LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       140 l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +..++..++++|+|||.+++..   .......+...+...||.-
T Consensus        53 ~~~~l~~~~~~Lk~~g~i~v~~---~d~~~~~~~~~~~~~gf~~   93 (260)
T 1g60_A           53 TYRWIDKVLDKLDKDGSLYIFN---TPFNCAFICQYLVSKGMIF   93 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE---CHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHhcCCeEEEEEc---CcHHHHHHHHHHHhhccce
Confidence            5677888899999999999886   3344556667788899853

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=88.56  E-value=0.23  Score=43.63  Aligned_cols=85  Identities=15%  Similarity=0.131  Sum_probs=55.1

Q ss_pred             CCeEEEEcC--CCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEc----cCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGC--GSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLG----DMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGc--GsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~----D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+||-+|+  |.|..+..++. .|.+|+++|.++..++.+++.... .++..    |+.+.+    +.+|+|+. ..- 
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~~~~~~~~~~~~~~~----~~~d~vid-~g~-  198 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE-EAATYAEVPERAKAW----GGLDLVLE-VRG-  198 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS-EEEEGGGHHHHHHHT----TSEEEEEE-CSC-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC-EEEECCcchhHHHHh----cCceEEEE-CCH-
Confidence            679999998  23555555554 478999999999888887654322 12221    110111    46899886 321 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ..+..+.++|+++|++++.
T Consensus       199 -----------------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          199 -----------------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             -----------------TTHHHHHTTEEEEEEEEEC
T ss_pred             -----------------HHHHHHHHhhccCCEEEEE
Confidence                             1355678899999998863

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.55  E-value=2.2  Score=36.62  Aligned_cols=108  Identities=18%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCC------------HHHHHHHHh----cCCcceEEEccCCCCCCC---
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDIS------------QSMLNIALE----REVEGDLLLGDMGQGLGL---  109 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis------------~~ml~~a~~----~~~~~~~~~~D~~~~~~~---  109 (291)
                      +..||=.|++.|.   +...|++.|..|+.+|.+            ...++.+..    ....+.++.+|+.+.-..   
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~   89 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRE   89 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence            4578888887664   445666779999999987            554444332    234567888898652110   


Q ss_pred             ------CCCcccEEEECCchhhhccccccCCchHHH-------HHHHHHHHHHhccCCcEEEEE
Q 043626          110 ------RPGVVDGAISISAVQWLCNADKASHEPRLR-------LKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ------~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~-------l~~~l~~l~~~LkpgG~lv~~  160 (291)
                            .-+..|++|.+..+.... ...........       ...+++.+...|+.+|.+++.
T Consensus        90 ~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           90 LANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence                  014789999886654321 11100111111       123445566667778888764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.54  E-value=4  Score=36.16  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             CeEEEEcCCC--chhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           53 RLLLDIGCGS--GLSGETLSENGH--QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        53 ~~VLDiGcGs--G~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      .+|.=||+|.  +.++..|...|+  .|+++|.++..++.+.+... ++-...|+.+.   .-...|+||..-..+    
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~-~~~~~~~~~~~---~~~~aDvVilavp~~----  105 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-IDEGTTSIAKV---EDFSPDFVMLSSPVR----  105 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-CSEEESCTTGG---GGGCCSEEEECSCGG----
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC-cchhcCCHHHH---hhccCCEEEEeCCHH----
Confidence            5899999875  335566677787  99999999998888765432 11223333210   123578888642222    


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA  176 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~  176 (291)
                                ....++..+...|++|..+ +.+........+.+...+
T Consensus       106 ----------~~~~vl~~l~~~l~~~~iv-~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A          106 ----------TFREIAKKLSYILSEDATV-TDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             ----------GHHHHHHHHHHHSCTTCEE-EECCSCCTHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhhccCCCcEE-EECCCCcHHHHHHHHHhc
Confidence                      1557788888899888754 444333334444454443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=88.26  E-value=0.64  Score=41.68  Aligned_cols=96  Identities=15%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             HHhCCCCCCCCCeEEEEcCC--CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C-C-CCCCc
Q 043626           42 ELLALPDDGVPRLLLDIGCG--SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L-G-LRPGV  113 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcG--sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~-~-~~~~~  113 (291)
                      +...+..   +.+||-+|++  .|..+..++. .|..|++++.++..++.+++.... .++..+ ...   + . .....
T Consensus       153 ~~~~~~~---g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~v~~~~-~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          153 RRGQLRA---GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD-IVLPLE-EGWAKAVREATGGAG  227 (342)
T ss_dssp             TTSCCCT---TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-EEEESS-TTHHHHHHHHTTTSC
T ss_pred             HhcCCCC---CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc-EEecCc-hhHHHHHHHHhCCCC
Confidence            3334444   7799999973  3566655555 478999999999888888775432 222222 110   0 0 11236


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+|+....-                  ..+..+.++|+++|++++.
T Consensus       228 ~Dvvid~~g~------------------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          228 VDMVVDPIGG------------------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             EEEEEESCC--------------------CHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEECCch------------------hHHHHHHHhhcCCCEEEEE
Confidence            9999865332                  1355678899999999864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=88.26  E-value=0.98  Score=40.64  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             CCeEEEEcCC--CchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----C-CCCCcccEEEECC
Q 043626           52 PRLLLDIGCG--SGLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----G-LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcG--sG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~-~~~~~fD~Vis~~  121 (291)
                      +..||-+|++  .|.....++ ..|..|+++|.++..++.+++.... ..+  |.... +     . .....+|+||.+.
T Consensus       163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~-~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~~  239 (354)
T 2j8z_A          163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA-AGF--NYKKEDFSEATLKFTKGAGVNLILDCI  239 (354)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS-EEE--ETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc-EEE--ecCChHHHHHHHHHhcCCCceEEEECC
Confidence            6799999853  344444444 4578999999999988888654322 122  22111 0     0 1124699998654


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .-.                  .+..+.++|+++|++++.
T Consensus       240 G~~------------------~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          240 GGS------------------YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             CGG------------------GHHHHHHHEEEEEEEEEC
T ss_pred             Cch------------------HHHHHHHhccCCCEEEEE
Confidence            321                  245678899999998874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.23  E-value=5.4  Score=34.82  Aligned_cols=117  Identities=16%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|.=||+|. | .++..|++.|+.|+++|.++..++.+.+...  .....+..+.    -...|+||..-.-.     
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~--~~~~~~~~e~----~~~aDvvi~~vp~~-----   75 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGA--CGAAASAREF----AGVVDALVILVVNA-----   75 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC--SEEESSSTTT----TTTCSEEEECCSSH-----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCC--ccccCCHHHH----HhcCCEEEEECCCH-----
Confidence            45788898876 3 2556667789999999999998887765422  2223444222    23568888642111     


Q ss_pred             cccCCchHHHHHHHH---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          130 DKASHEPRLRLKAFF---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                              .....++   ..+...|++|..++ ......+.....+...+...|.   .+++.|-
T Consensus        76 --------~~~~~v~~~~~~l~~~l~~g~ivv-~~st~~~~~~~~~~~~~~~~g~---~~~~~pv  128 (303)
T 3g0o_A           76 --------AQVRQVLFGEDGVAHLMKPGSAVM-VSSTISSADAQEIAAALTALNL---NMLDAPV  128 (303)
T ss_dssp             --------HHHHHHHC--CCCGGGSCTTCEEE-ECSCCCHHHHHHHHHHHHTTTC---EEEECCE
T ss_pred             --------HHHHHHHhChhhHHhhCCCCCEEE-ecCCCCHHHHHHHHHHHHHcCC---eEEeCCC
Confidence                    1134444   55667788776554 4444455556666666666543   3445543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=88.07  E-value=3  Score=38.63  Aligned_cols=90  Identities=13%  Similarity=0.035  Sum_probs=56.4

Q ss_pred             CCeEEEEcC-C-CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEc--cCCCC------------------C-
Q 043626           52 PRLLLDIGC-G-SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLG--DMGQG------------------L-  107 (291)
Q Consensus        52 ~~~VLDiGc-G-sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~--D~~~~------------------~-  107 (291)
                      +.+||-+|+ | .|..+..++. .|..+++++.++.-++.+++.....-+-..  |....                  + 
T Consensus       221 g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  300 (447)
T 4a0s_A          221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVV  300 (447)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHH
Confidence            679999997 3 2555555554 478999999999999988765432211111  11000                  0 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ......+|+|+....-                  ..+.....+|++||++++
T Consensus       301 ~~~g~g~Dvvid~~G~------------------~~~~~~~~~l~~~G~iv~  334 (447)
T 4a0s_A          301 EKAGREPDIVFEHTGR------------------VTFGLSVIVARRGGTVVT  334 (447)
T ss_dssp             HHHSSCCSEEEECSCH------------------HHHHHHHHHSCTTCEEEE
T ss_pred             HHhCCCceEEEECCCc------------------hHHHHHHHHHhcCCEEEE
Confidence            0002468999864321                  245677889999999987

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=87.76  E-value=0.9  Score=34.79  Aligned_cols=67  Identities=16%  Similarity=0.202  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~  120 (291)
                      ..+|+=+|||. |. +...|.+.|+.|+++|.++..++.+...  ...++.+|..+.-   ......+|+||..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--GFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            34789999864 22 3344445689999999999988877654  3567888875421   1123468988864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=87.73  E-value=2.1  Score=36.42  Aligned_cols=73  Identities=12%  Similarity=0.186  Sum_probs=50.3

Q ss_pred             CCeEEEEcC-CCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC---------CCCc
Q 043626           52 PRLLLDIGC-GSGL---SGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL---------RPGV  113 (291)
Q Consensus        52 ~~~VLDiGc-GsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~---------~~~~  113 (291)
                      +..||=.|+ |+|.   +...|++.|+.|+.+|.+...++.+.+..     ..+.++.+|+.+.-..         ..+.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  101 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR  101 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence            457888887 5654   55667778999999999988766554432     3578888998652110         0146


Q ss_pred             ccEEEECCchh
Q 043626          114 VDGAISISAVQ  124 (291)
Q Consensus       114 fD~Vis~~~l~  124 (291)
                      +|++|.+..+.
T Consensus       102 id~li~~Ag~~  112 (266)
T 3o38_A          102 LDVLVNNAGLG  112 (266)
T ss_dssp             CCEEEECCCCC
T ss_pred             CcEEEECCCcC
Confidence            89999886653

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=87.67  E-value=0.69  Score=41.18  Aligned_cols=88  Identities=13%  Similarity=0.032  Sum_probs=56.0

Q ss_pred             CCeEEEEcC--CCchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC-C-----C-CCCCcccEEEECC
Q 043626           52 PRLLLDIGC--GSGLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG-L-----G-LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGc--GsG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~-~-----~-~~~~~fD~Vis~~  121 (291)
                      +.+||-+|+  |.|.....++ ..|..|+++|.++..++.+++.... ..+  |.... .     . .....+|+||.+.
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~-~~~--d~~~~~~~~~i~~~~~~~~~d~vi~~~  222 (333)
T 1wly_A          146 GDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCH-HTI--NYSTQDFAEVVREITGGKGVDVVYDSI  222 (333)
T ss_dssp             TCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS-EEE--ETTTSCHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC-EEE--ECCCHHHHHHHHHHhCCCCCeEEEECC
Confidence            679999996  3455444444 4589999999999888888664322 122  32111 0     0 0123689998653


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .-                  ..+..+.++|+++|++++.
T Consensus       223 g~------------------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          223 GK------------------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CT------------------TTHHHHHHTEEEEEEEEEC
T ss_pred             cH------------------HHHHHHHHhhccCCEEEEE
Confidence            32                  2356778999999998764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.35  E-value=3.8  Score=35.02  Aligned_cols=73  Identities=18%  Similarity=0.315  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC----C-----CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG----L-----RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~----~-----~~~~fD~Vi  118 (291)
                      +..||=.|++.|.   +...|++.|++|+.++.++..++.+.+.. ..+.++.+|+.+.-.    +     .-+.+|++|
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv   85 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVA   85 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            4578888876553   34555667999999999988777665543 346778889854211    0     014689999


Q ss_pred             ECCchh
Q 043626          119 SISAVQ  124 (291)
Q Consensus       119 s~~~l~  124 (291)
                      .+..+.
T Consensus        86 nnAg~~   91 (263)
T 2a4k_A           86 HFAGVA   91 (263)
T ss_dssp             EGGGGT
T ss_pred             ECCCCC
Confidence            886653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=86.85  E-value=1.9  Score=38.17  Aligned_cols=73  Identities=23%  Similarity=0.150  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC----C--cceEEEccCCCCCCC---------CCCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE----V--EGDLLLGDMGQGLGL---------RPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~--~~~~~~~D~~~~~~~---------~~~~  113 (291)
                      +..||=.|+++|.   +...|++.|..|++++.++..++.+....    .  .+.++.+|+.+.-.+         ..+.
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGP   87 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            4589989987764   44566677999999999998776654432    2  467888898652110         1257


Q ss_pred             ccEEEECCchh
Q 043626          114 VDGAISISAVQ  124 (291)
Q Consensus       114 fD~Vis~~~l~  124 (291)
                      +|++|.+..+.
T Consensus        88 id~lv~nAg~~   98 (319)
T 3ioy_A           88 VSILCNNAGVN   98 (319)
T ss_dssp             EEEEEECCCCC
T ss_pred             CCEEEECCCcC
Confidence            89999886653

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=86.67  E-value=7.5  Score=32.16  Aligned_cols=73  Identities=21%  Similarity=0.171  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC----C-CCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG----L-RPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~----~-~~~~fD~Vis~~~l  123 (291)
                      +..||=.|++.|.   +...|++.|++|++++.++..++...+....+.++.+|+.+.-.    + ..+.+|+||.+..+
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~   86 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAAL   86 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCcc
Confidence            4578888865443   33444567899999999987776555544456778888864210    1 12468999988664


Q ss_pred             h
Q 043626          124 Q  124 (291)
Q Consensus       124 ~  124 (291)
                      .
T Consensus        87 ~   87 (244)
T 1cyd_A           87 V   87 (244)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.49  E-value=12  Score=32.00  Aligned_cols=103  Identities=17%  Similarity=0.087  Sum_probs=60.0

Q ss_pred             eEEEEcCCC-c-hhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCC-cccEEEECCchhhhcc
Q 043626           54 LLLDIGCGS-G-LSGETLSENGH--QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPG-VVDGAISISAVQWLCN  128 (291)
Q Consensus        54 ~VLDiGcGs-G-~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~-~fD~Vis~~~l~~l~~  128 (291)
                      +|.=||+|. | .++..|...|+  .|+++|.++..++.+.+.... .....|..+.    -. ..|+|+..-..     
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~----~~~~aDvVilavp~-----   72 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-DEGTTSIAKV----EDFSPDFVMLSSPV-----   72 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-SEEESCGGGG----GGTCCSEEEECSCH-----
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc-ccccCCHHHH----hcCCCCEEEEcCCH-----
Confidence            677888876 3 24455566677  899999999888777643221 1112232111    13 57888864222     


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA  176 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~  176 (291)
                               .....++..+...|+++..++. .........+.+.+.+
T Consensus        73 ---------~~~~~v~~~l~~~l~~~~iv~~-~~~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           73 ---------RTFREIAKKLSYILSEDATVTD-QGSVKGKLVYDLENIL  110 (281)
T ss_dssp             ---------HHHHHHHHHHHHHSCTTCEEEE-CCSCCTHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHhhCCCCcEEEE-CCCCcHHHHHHHHHhc
Confidence                     2255777888888998875443 3222333444455544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=86.47  E-value=0.74  Score=41.25  Aligned_cols=95  Identities=12%  Similarity=0.003  Sum_probs=50.9

Q ss_pred             eEE-EccCCCCC-CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-----HHH
Q 043626           97 DLL-LGDMGQGL-GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-----AQR  169 (291)
Q Consensus        97 ~~~-~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-----~~~  169 (291)
                      .++ ++|..+.+ .++.++||+|++.....--.+.-.....-..-+..+|..++++|+|||.+++.......     ..+
T Consensus        40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~l  119 (319)
T 1eg2_A           40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDL  119 (319)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCH
T ss_pred             eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccccccccccH
Confidence            455 66653322 23356888888764332110000000111122567888899999999999997654322     223


Q ss_pred             HHHHHHHHHcC-CCC--cEEEeCCC
Q 043626          170 ELILGAAMRAG-FAG--GVVVDYPH  191 (291)
Q Consensus       170 ~~i~~~~~~aG-F~~--~~~~~~p~  191 (291)
                      ..+...+...| |.-  .++...++
T Consensus       120 ~~l~~~i~~~G~~~~~~~IIW~K~~  144 (319)
T 1eg2_A          120 ISIISHMRQNSKMLLANLIIWNYPN  144 (319)
T ss_dssp             HHHHHHHHHHCCCEEEEEEEEECSC
T ss_pred             HHHHHHHhCcccceeEEEEEEECCC
Confidence            45566666666 643  33444443

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=85.70  E-value=2.5  Score=39.39  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             CCeEEEEcC-C-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--------------------
Q 043626           52 PRLLLDIGC-G-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--------------------  108 (291)
Q Consensus        52 ~~~VLDiGc-G-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--------------------  108 (291)
                      +.+||=+|+ | .|..+..++.. |..+++++.++.-++.+++.... .++...- ..+.                    
T Consensus       229 g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~-~vi~~~~-~d~~~~~~~~~~~~~~~~~~~~~i  306 (456)
T 3krt_A          229 GDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE-AIIDRNA-EGYRFWKDENTQDPKEWKRFGKRI  306 (456)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC-EEEETTT-TTCCSEEETTEECHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc-EEEecCc-CcccccccccccchHHHHHHHHHH
Confidence            679999997 3 36666666654 78999999999999988765432 1221110 0010                    


Q ss_pred             ---CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          109 ---LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       109 ---~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                         .....+|+|+-...-                  ..+....++|++||++++
T Consensus       307 ~~~t~g~g~Dvvid~~G~------------------~~~~~~~~~l~~~G~iv~  342 (456)
T 3krt_A          307 RELTGGEDIDIVFEHPGR------------------ETFGASVFVTRKGGTITT  342 (456)
T ss_dssp             HHHHTSCCEEEEEECSCH------------------HHHHHHHHHEEEEEEEEE
T ss_pred             HHHhCCCCCcEEEEcCCc------------------hhHHHHHHHhhCCcEEEE
Confidence               012478988854221                  356678889999999987

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=85.63  E-value=0.55  Score=42.30  Aligned_cols=90  Identities=13%  Similarity=0.007  Sum_probs=56.3

Q ss_pred             CCeEEEEcC-C-CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C-CCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGC-G-SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L-GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGc-G-sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~-~~~~~~fD~Vis~~~l~  124 (291)
                      +.+||-+|+ | .|.....++. .|.+|+++|.++..++.+++.... .++..+-...   + ....+.+|+|+....- 
T Consensus       168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-  245 (353)
T 4dup_A          168 GESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK-RGINYRSEDFAAVIKAETGQGVDIILDMIGA-  245 (353)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC-EEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence            679999853 3 3555555554 488999999999999988775432 1222111000   0 0013469999865332 


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ..+..+..+|+++|++++.
T Consensus       246 -----------------~~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          246 -----------------AYFERNIASLAKDGCLSII  264 (353)
T ss_dssp             -----------------GGHHHHHHTEEEEEEEEEC
T ss_pred             -----------------HHHHHHHHHhccCCEEEEE
Confidence                             1355678899999998864

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=85.56  E-value=3.4  Score=35.66  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC----C-----CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG----L-----RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~----~-----~~~~fD~Vi  118 (291)
                      +..||=.|++.|.   +...|++.|..|+.+|.++..++.+.+.. ..+.++.+|+.+.-.    +     .-+..|++|
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  108 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLV  108 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4578888877664   45566677999999999988776655443 456788889865211    0     114789999


Q ss_pred             ECCchhh
Q 043626          119 SISAVQW  125 (291)
Q Consensus       119 s~~~l~~  125 (291)
                      .+..+..
T Consensus       109 nnAg~~~  115 (277)
T 3gvc_A          109 ANAGVVH  115 (277)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCCC
Confidence            8866543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.30  E-value=7.2  Score=33.09  Aligned_cols=64  Identities=20%  Similarity=0.191  Sum_probs=46.4

Q ss_pred             CeEEEEcCCCchhHHHHHH----cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           53 RLLLDIGCGSGLSGETLSE----NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~----~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      .+||=.||  |.+|..+++    .|+.|++++-++........  ..+.++.+|+.+ +.  ...+|+||.....
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~d-~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--SGAEPLLWPGEE-PS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--TTEEEEESSSSC-CC--CTTCCEEEECCCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--CCCeEEEecccc-cc--cCCCCEEEECCCc
Confidence            58999995  887776664    58999999998865544332  347889999855 33  4578999976554

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.27  E-value=4.8  Score=32.77  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=57.0

Q ss_pred             eEEEEcCCCchhHHHHH----HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           54 LLLDIGCGSGLSGETLS----ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~----~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      +||=.|+ +|.+|..++    +.|+.|++++-++..+....  ...+.++.+|+.+.-...-..+|+||.+....|-...
T Consensus         2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~   78 (224)
T 3h2s_A            2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGR   78 (224)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSC
T ss_pred             EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEeccccccccc--CCCceEEecccccccHhhcccCCEEEECCccCCCcch
Confidence            5777775 565555544    56899999999987665432  2457888999854221112468999988766542211


Q ss_pred             cccCCchHHHHHHHHHHHHHhccC-CcEEEEE
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLAR-GARAVFQ  160 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~Lkp-gG~lv~~  160 (291)
                            . .........+...++. |+++++.
T Consensus        79 ------~-~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           79 ------G-YLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             ------T-HHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             ------h-hHHHHHHHHHHHHHHHcCCcEEEE
Confidence                  1 1122334455555543 5666654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=84.75  E-value=6.7  Score=33.51  Aligned_cols=99  Identities=21%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|.=||||. | .++..|...|++|+++|.++..++.+.+.... .....|+.+   .  ...|+||..-..        
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~---~--~~~D~vi~av~~--------   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV-DEAGQDLSL---L--QTAKIIFLCTPI--------   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC-SEEESCGGG---G--TTCSEEEECSCH--------
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCC-ccccCCHHH---h--CCCCEEEEECCH--------
Confidence            577788875 2 24455667789999999999888776543221 112223211   1  467988865222        


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL  173 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~  173 (291)
                            .....++..+...++++..+ +.+........+.+.
T Consensus        68 ------~~~~~~~~~l~~~~~~~~~v-v~~~~~~~~~~~~~~  102 (279)
T 2f1k_A           68 ------QLILPTLEKLIPHLSPTAIV-TDVASVKTAIAEPAS  102 (279)
T ss_dssp             ------HHHHHHHHHHGGGSCTTCEE-EECCSCCHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhhCCCCCEE-EECCCCcHHHHHHHH
Confidence                  22567788888888887755 444333444444333

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=84.70  E-value=9.6  Score=35.14  Aligned_cols=131  Identities=11%  Similarity=-0.086  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC---Ce----EEEEeCCHHHHHHHHhcCCc-ceE-------------------------
Q 043626           52 PRLLLDIGCGSGLSGETLSENG---HQ----WIGLDISQSMLNIALEREVE-GDL-------------------------   98 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g---~~----v~gvDis~~ml~~a~~~~~~-~~~-------------------------   98 (291)
                      ..+|||+.||.|.....|.+.|   ..    +.++|+++.++..-..++.. +.+                         
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i   89 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGI   89 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHH
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhcccccccccccccc
Confidence            3589999999999999998877   23    78899999988877766543 110                         


Q ss_pred             --------------------EEccCCCCCC-CCCCcccEEEECCchhhhcccccc-C-Cc---hHHH-HHHHHHHHHHh-
Q 043626           99 --------------------LLGDMGQGLG-LRPGVVDGAISISAVQWLCNADKA-S-HE---PRLR-LKAFFGSLYRC-  150 (291)
Q Consensus        99 --------------------~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~~~~-~-~~---p~~~-l~~~l~~l~~~-  150 (291)
                                          ..+|+.+-.+ --++.+|+++..+.-|.+..+.+. . .+   ++.. +..++.-+..+ 
T Consensus        90 ~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~rii~~~~  169 (403)
T 4dkj_A           90 KKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIK  169 (403)
T ss_dssp             HHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhCCCCCCCccccccchhHHHHHHHHHHhh
Confidence                                2356533211 113467999988776665433221 1 11   2222 23333333331 


Q ss_pred             ------ccCCcEEEEE-EcC-C---ChHHHHHHHHHHHHcCCCC
Q 043626          151 ------LARGARAVFQ-IYP-E---SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       151 ------LkpgG~lv~~-~~~-~---~~~~~~~i~~~~~~aGF~~  183 (291)
                            ++|.- +++. +.. .   .......+...+...||..
T Consensus       170 ~k~~~~~~Pk~-~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v  212 (403)
T 4dkj_A          170 NSFSKEEMPKY-LLMENVKNLLSHKNKKNYNTWLKQLEKFGYKS  212 (403)
T ss_dssp             HHSCGGGSCSE-EEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEE
T ss_pred             hhhccccCCCE-EEEecchhhhhhccchHHHHHHHHHHhCCCeE
Confidence                  67753 4443 321 1   1235678888999999875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.45  E-value=2.5  Score=36.98  Aligned_cols=73  Identities=19%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCC---------CCCccc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGL---------RPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~---------~~~~fD  115 (291)
                      +..||=.|+++|.   +...|++.|..|++++.++..++.+.+.    ...+.++.+|+.+.-..         ..+.+|
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id  110 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVD  110 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence            5689988887664   4455667799999999999877665443    23567888998652110         014789


Q ss_pred             EEEECCchh
Q 043626          116 GAISISAVQ  124 (291)
Q Consensus       116 ~Vis~~~l~  124 (291)
                      ++|.+..+.
T Consensus       111 ~lvnnAg~~  119 (301)
T 3tjr_A          111 VVFSNAGIV  119 (301)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcC
Confidence            999886654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=84.34  E-value=2.3  Score=38.34  Aligned_cols=87  Identities=17%  Similarity=0.134  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCH---HHHHHHHhcCCcceEEEccCCCCCC--C--CCCcccEEEECCc
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQ---SMLNIALEREVEGDLLLGDMGQGLG--L--RPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~---~ml~~a~~~~~~~~~~~~D~~~~~~--~--~~~~fD~Vis~~~  122 (291)
                      +.+||-+|+|. |.....++. .|..|+++|.++   ..++.+++..  .+.+  | .+.+.  .  ..+.+|+||....
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g--a~~v--~-~~~~~~~~~~~~~~~d~vid~~g  255 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK--TNYY--N-SSNGYDKLKDSVGKFDVIIDATG  255 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT--CEEE--E-CTTCSHHHHHHHCCEEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC--Ccee--c-hHHHHHHHHHhCCCCCEEEECCC
Confidence            45899999832 334444443 478999999998   7777776543  2333  3 22110  0  0146899986533


Q ss_pred             hhhhccccccCCchHHHHHHHH-HHHHHhccCCcEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFF-GSLYRCLARGARAVFQ  160 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l-~~l~~~LkpgG~lv~~  160 (291)
                      ..                 ..+ ..+.++|+++|++++.
T Consensus       256 ~~-----------------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          256 AD-----------------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             CC-----------------THHHHHHGGGEEEEEEEEEC
T ss_pred             Ch-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            21                 234 6788999999998864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.32  E-value=5.7  Score=34.34  Aligned_cols=93  Identities=15%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CeEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceE----EEccCC--C--CCCCCCCcccEEEECCc
Q 043626           53 RLLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDL----LLGDMG--Q--GLGLRPGVVDGAISISA  122 (291)
Q Consensus        53 ~~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~----~~~D~~--~--~~~~~~~~fD~Vis~~~  122 (291)
                      ++|.=||+|. | .++..|++.|++|+++|.++..++...+.......    ....+.  .  .+.-.-..+|+||..-.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            4788899875 3 24556667789999999999887776654211100    000010  0  01000126798886422


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .              .....++..+...|+++..++.
T Consensus        84 ~--------------~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           84 A--------------QQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             H--------------HHHHHHHHHHGGGCCTTCEEEE
T ss_pred             c--------------ccHHHHHHHHHHhcCCCCEEEE
Confidence            2              2256778888888888776554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=84.25  E-value=3.2  Score=37.62  Aligned_cols=111  Identities=11%  Similarity=0.027  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|.=||+|. | .++..|++.|+.|+++|.++..++.+.+....   ...++.+.+. .....|+||..-...     
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~s~~e~~~-~a~~~DvVi~~vp~~-----   92 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIA---GARSIEEFCA-KLVKPRVVWLMVPAA-----   92 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCB---CCSSHHHHHH-HSCSSCEEEECSCGG-----
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCE---EeCCHHHHHh-cCCCCCEEEEeCCHH-----
Confidence            45888999875 2 24566667899999999999888776654211   0111100000 012348888642221     


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                               ....++..+...|++|.. ++......+.....+...+...|.
T Consensus        93 ---------~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~g~  134 (358)
T 4e21_A           93 ---------VVDSMLQRMTPLLAANDI-VIDGGNSHYQDDIRRADQMRAQGI  134 (358)
T ss_dssp             ---------GHHHHHHHHGGGCCTTCE-EEECSSCCHHHHHHHHHHHHTTTC
T ss_pred             ---------HHHHHHHHHHhhCCCCCE-EEeCCCCChHHHHHHHHHHHHCCC
Confidence                     156777888888888765 445544555566666677766664

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=84.25  E-value=3  Score=35.41  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             CCeEEEEcCC--Cch---hHHHHHHcCCeEEEEeCCHHHHHHHHh---cCC--cceEEEccCCCCCCC---------CCC
Q 043626           52 PRLLLDIGCG--SGL---SGETLSENGHQWIGLDISQSMLNIALE---REV--EGDLLLGDMGQGLGL---------RPG  112 (291)
Q Consensus        52 ~~~VLDiGcG--sG~---~~~~L~~~g~~v~gvDis~~ml~~a~~---~~~--~~~~~~~D~~~~~~~---------~~~  112 (291)
                      +..||=.|++  +|.   +...|++.|..|+.++.+....+.+.+   ...  .+.++.+|+.+.-..         ..+
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVG   86 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5688888876  443   456667789999999887643333322   221  478889998653211         014


Q ss_pred             cccEEEECCchhhhcc-ccccCCchHHHH-----------HHHHHHHHHhccCCcEEEEE
Q 043626          113 VVDGAISISAVQWLCN-ADKASHEPRLRL-----------KAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~-~~~~~~~p~~~l-----------~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+|++|.+..+.+... .......+...+           ..+++.+...|+++|.+++.
T Consensus        87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           87 VIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             CeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            7899998765543100 000001111112           23455666677788888874

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=84.20  E-value=5.7  Score=33.16  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC-----CCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG-----LRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~-----~~~~~fD~Vis~~~  122 (291)
                      +.+||=.|++.|.   +...|++.|+.|+.++.++..++...+.. ..+.++.+|+.+.-.     -..+..|++|.+..
T Consensus        14 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~Ag   93 (249)
T 3f9i_A           14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCNAG   93 (249)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEECCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            5688888876653   44555667999999999998777665443 346778888854210     11257899998866


Q ss_pred             hh
Q 043626          123 VQ  124 (291)
Q Consensus       123 l~  124 (291)
                      +.
T Consensus        94 ~~   95 (249)
T 3f9i_A           94 IT   95 (249)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=84.17  E-value=6.9  Score=34.53  Aligned_cols=117  Identities=14%  Similarity=0.089  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|.=||+|. |. ++..|++.|+.|+++|.++..++.+.+..  +. ...+..+.    ....|+||..-.-      
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g--~~-~~~~~~e~----~~~aDvVi~~vp~------   97 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG--AT-IHEQARAA----ARDADIVVSMLEN------   97 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT--CE-EESSHHHH----HTTCSEEEECCSS------
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC--CE-eeCCHHHH----HhcCCEEEEECCC------
Confidence            56899999986 33 55667778999999999998877766542  21 22222111    1245888854211      


Q ss_pred             cccCCchHHHHHHHHH--HHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          130 DKASHEPRLRLKAFFG--SLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~--~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                             ...+..++.  .+...|++|..+ +......+.....+...+...|.   .+++.|.+
T Consensus        98 -------~~~~~~v~~~~~~~~~l~~~~~v-i~~st~~~~~~~~~~~~~~~~g~---~~~~~pv~  151 (320)
T 4dll_A           98 -------GAVVQDVLFAQGVAAAMKPGSLF-LDMASITPREARDHAARLGALGI---AHLDTPVS  151 (320)
T ss_dssp             -------HHHHHHHHTTTCHHHHCCTTCEE-EECSCCCHHHHHHHHHHHHHTTC---EEEECCEE
T ss_pred             -------HHHHHHHHcchhHHhhCCCCCEE-EecCCCCHHHHHHHHHHHHHcCC---EEEeCCCc
Confidence                   112445555  566778777654 44444456666677777776653   34555543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=84.06  E-value=4.2  Score=35.15  Aligned_cols=107  Identities=13%  Similarity=0.063  Sum_probs=63.4

Q ss_pred             CeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           53 RLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        53 ~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      .+|.=||||. |. ++..|...|+.|+++|.++..++.+.+..  +. ...+..+.    -...|+|+..-...      
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g--~~-~~~~~~~~----~~~~D~vi~~v~~~------   72 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG--AE-TASTAKAI----AEQCDVIITMLPNS------   72 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT--CE-ECSSHHHH----HHHCSEEEECCSSH------
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC--Ce-ecCCHHHH----HhCCCEEEEECCCH------
Confidence            4788999986 32 45566677899999999998877766541  11 11111010    12468888652211      


Q ss_pred             ccCCchHHHHHHHH---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          131 KASHEPRLRLKAFF---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       131 ~~~~~p~~~l~~~l---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                             ..+..++   ..+...|++|..+ +.+....+...+.+.+.+...|
T Consensus        73 -------~~~~~~~~~~~~l~~~l~~~~~v-v~~s~~~~~~~~~l~~~~~~~g  117 (299)
T 1vpd_A           73 -------PHVKEVALGENGIIEGAKPGTVL-IDMSSIAPLASREISDALKAKG  117 (299)
T ss_dssp             -------HHHHHHHHSTTCHHHHCCTTCEE-EECSCCCHHHHHHHHHHHHTTT
T ss_pred             -------HHHHHHHhCcchHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcC
Confidence                   1134555   5677788888755 4444444444566777666554

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=83.95  E-value=2.1  Score=36.50  Aligned_cols=72  Identities=17%  Similarity=0.109  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCC---------CCCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGL---------RPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~---------~~~~  113 (291)
                      +..||=.|++.|.   +...|++.|+.|++++.++..++.+....      ..+.++.+|+.+.-..         ..+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR   86 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            4578888876553   34555667999999999987665433221      2356788898542110         0146


Q ss_pred             ccEEEECCch
Q 043626          114 VDGAISISAV  123 (291)
Q Consensus       114 fD~Vis~~~l  123 (291)
                      +|++|.+..+
T Consensus        87 id~lv~~Ag~   96 (267)
T 2gdz_A           87 LDILVNNAGV   96 (267)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            7999987654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=83.83  E-value=3.8  Score=34.87  Aligned_cols=73  Identities=16%  Similarity=0.018  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC----C-----CCCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG----L-----RPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~----~-----~~~~  113 (291)
                      +..+|=.|++.|.   +...|++.|..|+.+|.++..++.+.+..      ..+.++.+|+.+.-.    +     .-+.
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGC   87 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4588888887764   44566677999999999988766554432      126778889865211    0     1247


Q ss_pred             ccEEEECCchh
Q 043626          114 VDGAISISAVQ  124 (291)
Q Consensus       114 fD~Vis~~~l~  124 (291)
                      .|++|.+..+.
T Consensus        88 id~lvnnAg~~   98 (265)
T 3lf2_A           88 ASILVNNAGQG   98 (265)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999886654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=83.74  E-value=11  Score=31.06  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCC------CCCCCcccEEEECCch
Q 043626           54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGL------GLRPGVVDGAISISAV  123 (291)
Q Consensus        54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~------~~~~~~fD~Vis~~~l  123 (291)
                      .||=.|++.|.   +...|++.|..|+.++.++..++.+.... ..+.++..|+.+.-      .--...+|++|.+..+
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag~   82 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAGS   82 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCCC
T ss_pred             EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCCc
Confidence            57777876654   44555667999999999998887766554 34678888986521      1112345999987664


Q ss_pred             h
Q 043626          124 Q  124 (291)
Q Consensus       124 ~  124 (291)
                      .
T Consensus        83 ~   83 (230)
T 3guy_A           83 G   83 (230)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.79  E-value=2.8  Score=36.59  Aligned_cols=106  Identities=13%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC---------CCCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG---------LRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~---------~~~~~fD~Vi  118 (291)
                      +..+|=-|+++|.   ....|++.|..|+.+|.+++.++.+.+.. ..+..+.+|+.+.-.         -.-+..|++|
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV  108 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLF  108 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5678888887775   55667778999999999999887765543 346778889865211         1126789999


Q ss_pred             ECCchhhhccccccCCchHHHH-----------HHHHHHHHHhccCCcEEEEE
Q 043626          119 SISAVQWLCNADKASHEPRLRL-----------KAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l-----------~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+.........   ..-+...+           -.+.+.+...|+.+|.++..
T Consensus       109 NNAG~~~~~~~---~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          109 VNAGGGSMLPL---GEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             ECCCCCCCCCT---TSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             ECCCCCCCCCh---hhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            88665432111   11122222           23344556677788887764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=82.77  E-value=5.6  Score=33.92  Aligned_cols=106  Identities=19%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCC-HHHHHHHHh----cCCcceEEEccCCCCCC----C-----CCCcc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDIS-QSMLNIALE----REVEGDLLLGDMGQGLG----L-----RPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis-~~ml~~a~~----~~~~~~~~~~D~~~~~~----~-----~~~~f  114 (291)
                      +..+|=.|++.|.   +...|++.|..|+.++.. ...++...+    ....+.++.+|+.+.-.    +     ..+..
T Consensus        18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   97 (270)
T 3is3_A           18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHL   97 (270)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5678888877664   445566779999988763 443333322    23456788899865211    0     01468


Q ss_pred             cEEEECCchhhhccccccCCchHHHH-----------HHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRL-----------KAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l-----------~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |++|.+..+.......   ..+...+           ..+.+.+...|+++|.+++.
T Consensus        98 d~lvnnAg~~~~~~~~---~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  151 (270)
T 3is3_A           98 DIAVSNSGVVSFGHLK---DVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT  151 (270)
T ss_dssp             CEEECCCCCCCCCCGG---GCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CEEEECCCCCCCCCcc---cCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            9999876553321100   0011111           33456677778889988874

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=82.75  E-value=5.3  Score=33.77  Aligned_cols=73  Identities=16%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC----C-----CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG----L-----RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~----~-----~~~~fD~Vi  118 (291)
                      +..||=.|++.|.   +...|++.|++|+.+|.+...++...... ..+.++.+|+.+.-.    +     ..+.+|++|
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   87 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILV   87 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4578888876653   44556677999999999988776655433 346788889865211    0     124789999


Q ss_pred             ECCchh
Q 043626          119 SISAVQ  124 (291)
Q Consensus       119 s~~~l~  124 (291)
                      .+..+.
T Consensus        88 ~~Ag~~   93 (259)
T 4e6p_A           88 NNAALF   93 (259)
T ss_dssp             ECCCCC
T ss_pred             ECCCcC
Confidence            886653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=82.62  E-value=3.2  Score=38.82  Aligned_cols=69  Identities=17%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             ccccccchhHHHHH-HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH----cC---CeEEEEeCCHHHHHHHHhc
Q 043626           21 RKYTSSSRIIDIQA-KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE----NG---HQWIGLDISQSMLNIALER   92 (291)
Q Consensus        21 ~~Y~~~~~~~~iq~-~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~----~g---~~v~gvDis~~ml~~a~~~   92 (291)
                      -.|.+++.+..+.. .+...+++.+....   +..|+|+|+|+|.+..-+..    .+   .+++.||+|+.+.+.-+++
T Consensus       109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~  185 (432)
T 4f3n_A          109 SDFVTAPELSPLFAQTLARPVAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRET  185 (432)
T ss_dssp             -CCSSCGGGHHHHHHHHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHH
T ss_pred             CCccCchhhhHHHHHHHHHHHHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHH
Confidence            34555555555432 23334444433222   45999999999998766653    22   4799999999876554443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=82.57  E-value=3.7  Score=35.75  Aligned_cols=107  Identities=10%  Similarity=-0.025  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCc--h---hHHHHHHcCCeEEEEeCCHHHHHHHHh---cCCcceEEEccCCCCCC----C-----CCCcc
Q 043626           52 PRLLLDIGCGSG--L---SGETLSENGHQWIGLDISQSMLNIALE---REVEGDLLLGDMGQGLG----L-----RPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG--~---~~~~L~~~g~~v~gvDis~~ml~~a~~---~~~~~~~~~~D~~~~~~----~-----~~~~f  114 (291)
                      +..||=.|+++|  .   +...|++.|..|+.++.++...+.+.+   ....+.++.+|+.+.-.    +     .-+.+
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  110 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGKL  110 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            568898997643  2   456667789999999998754433332   22346788889865211    0     12578


Q ss_pred             cEEEECCchhhh---ccccccCCchHHH-----------HHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWL---CNADKASHEPRLR-----------LKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l---~~~~~~~~~p~~~-----------l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |++|.+..+...   ...  ....+...           ...+++.+...|+.+|++++.
T Consensus       111 D~lVnnAG~~~~~~~~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~i  168 (293)
T 3grk_A          111 DFLVHAIGFSDKDELTGR--YIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTL  168 (293)
T ss_dssp             SEEEECCCCCCHHHHTSC--GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEECCccCCccccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            999988665421   000  00011111           133455666777788988874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=82.43  E-value=6.7  Score=33.11  Aligned_cols=73  Identities=16%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCC----CC-----C-Ccc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLG----LR-----P-GVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~----~~-----~-~~f  114 (291)
                      +..||=.|++.|.   +...|++.|++|++++.++..++.+.+.    ...+.++.+|+.+.-.    +.     - +.+
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~i   88 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKL   88 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4578888876553   3445556799999999998766554332    2346778889855211    00     1 678


Q ss_pred             cEEEECCchh
Q 043626          115 DGAISISAVQ  124 (291)
Q Consensus       115 D~Vis~~~l~  124 (291)
                      |++|.+..+.
T Consensus        89 d~lv~~Ag~~   98 (260)
T 2ae2_A           89 NILVNNAGIV   98 (260)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999886643

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=82.25  E-value=8.3  Score=33.12  Aligned_cols=73  Identities=19%  Similarity=0.116  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc-----CCcceEEEccCCCCCC---------CCCCcc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER-----EVEGDLLLGDMGQGLG---------LRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~-----~~~~~~~~~D~~~~~~---------~~~~~f  114 (291)
                      +..||=.|++.|.   +...|++.|++|++++.++..++...+.     ...+.++.+|+.+.-.         -..+.+
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  105 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHP  105 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            4578888876543   3344556789999999998766544332     3457788899864210         012467


Q ss_pred             cEEEECCchh
Q 043626          115 DGAISISAVQ  124 (291)
Q Consensus       115 D~Vis~~~l~  124 (291)
                      |++|.+..+.
T Consensus       106 d~li~~Ag~~  115 (302)
T 1w6u_A          106 NIVINNAAGN  115 (302)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999886643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.84  E-value=7.7  Score=33.43  Aligned_cols=84  Identities=11%  Similarity=0.077  Sum_probs=53.3

Q ss_pred             CeEEEEcC-CC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           53 RLLLDIGC-GS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        53 ~~VLDiGc-Gs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      .+|.=||| |. | .++..|...|++|+++|.++..++.+.+..  +..  .+..+    .....|+||..-..      
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g--~~~--~~~~~----~~~~aDvVi~av~~------   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG--IPL--TDGDG----WIDEADVVVLALPD------   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT--CCC--CCSSG----GGGTCSEEEECSCH------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC--CCc--CCHHH----HhcCCCEEEEcCCc------
Confidence            47999998 75 3 345666677899999999998877766521  211  12111    12357988864222      


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                              ..+..++..+...|++|..++
T Consensus        78 --------~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           78 --------NIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             --------HHHHHHHHHHGGGSCTTCEEE
T ss_pred             --------hHHHHHHHHHHHhCCCCCEEE
Confidence                    225677778877888776444

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=81.49  E-value=5.4  Score=34.22  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHH-HHHH----HhcCCcceEEEccCCCCCC----C-----CCCcc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSM-LNIA----LEREVEGDLLLGDMGQGLG----L-----RPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~m-l~~a----~~~~~~~~~~~~D~~~~~~----~-----~~~~f  114 (291)
                      +..||=.|++.|.   +...|++.|++|++++.+... ++.+    ......+.++.+|+.+.-.    +     .-+.+
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i  108 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKL  108 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4578877776553   334455678999999887532 2222    2223346778888854211    0     01468


Q ss_pred             cEEEECCchhhhccccccCCchHHHH-----------HHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLRL-----------KAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~l-----------~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |++|.+..+.......   ..+...+           ..+++.+...|+.+|++++.
T Consensus       109 D~lv~~Ag~~~~~~~~---~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  162 (283)
T 1g0o_A          109 DIVCSNSGVVSFGHVK---DVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  162 (283)
T ss_dssp             CEEEECCCCCCCCCGG---GCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEECCCcCCCCCcc---cCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            9999886543211000   0011112           23445666667777888874

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=81.40  E-value=3.2  Score=34.98  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCCchhHH----HHHH-cCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCC---------CCCc
Q 043626           52 PRLLLDIGCGSGLSGE----TLSE-NGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGL---------RPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~----~L~~-~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~---------~~~~  113 (291)
                      +..||=.|++ |.+|.    .|++ .|+.|++++.++..++.+.+.    ...+.++.+|+.+.-..         ..+.
T Consensus         4 ~k~vlITGas-ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            4 IHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4578877754 54444    4456 789999999987765544332    23467888998542110         0137


Q ss_pred             ccEEEECCch
Q 043626          114 VDGAISISAV  123 (291)
Q Consensus       114 fD~Vis~~~l  123 (291)
                      +|+||.+...
T Consensus        83 id~li~~Ag~   92 (276)
T 1wma_A           83 LDVLVNNAGI   92 (276)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            8999987654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=81.31  E-value=5  Score=34.89  Aligned_cols=73  Identities=14%  Similarity=0.049  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCC--ch---hHHHHHHcCCeEEEEeCCHHHHHHHH---hcCCcceEEEccCCCCCC----C-----CCCcc
Q 043626           52 PRLLLDIGCGS--GL---SGETLSENGHQWIGLDISQSMLNIAL---EREVEGDLLLGDMGQGLG----L-----RPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGs--G~---~~~~L~~~g~~v~gvDis~~ml~~a~---~~~~~~~~~~~D~~~~~~----~-----~~~~f  114 (291)
                      +..||=.|+++  |.   +...|++.|..|+.+|.++...+.+.   .....+.++.+|+.+.-.    +     .-+.+
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  109 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSL  109 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            45888888764  43   45666677999999999864333222   222335788889865211    0     01578


Q ss_pred             cEEEECCchh
Q 043626          115 DGAISISAVQ  124 (291)
Q Consensus       115 D~Vis~~~l~  124 (291)
                      |++|.+..+.
T Consensus       110 D~lVnnAG~~  119 (296)
T 3k31_A          110 DFVVHAVAFS  119 (296)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCcC
Confidence            9999886653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=81.22  E-value=6.5  Score=32.34  Aligned_cols=90  Identities=11%  Similarity=0.041  Sum_probs=55.5

Q ss_pred             eEEEEcCCCchhHHHHH----HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---CCCCcccEEEECCchhhh
Q 043626           54 LLLDIGCGSGLSGETLS----ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---LRPGVVDGAISISAVQWL  126 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L~----~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---~~~~~fD~Vis~~~l~~l  126 (291)
                      +|+=+|+  |.+|..++    +.|+.|+++|.++..++...+.. ...++.+|....-.   ..-..+|+||+...-.  
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d--   76 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-KATIIHGDGSHKEILRDAEVSKNDVVVILTPRD--   76 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-SSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH--
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-CCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc--
Confidence            4666776  55555444    56899999999999887654432 45688888754211   1134689888652211  


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                  ....++..+.+.+.+...++..
T Consensus        77 ------------~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           77 ------------EVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             ------------HHHHHHHHHHHHTSCCCEEEEC
T ss_pred             ------------HHHHHHHHHHHHHcCCCeEEEE
Confidence                        1334555566666677776663

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=81.01  E-value=8.7  Score=33.13  Aligned_cols=107  Identities=11%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCc-hhhhcc
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISA-VQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~-l~~l~~  128 (291)
                      ..+|.=||||. |. ++..|...|+.|+++|.++..++...+.  .+. ...+..+.    -...|+|+..-. -++   
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~-~~~~~~~~----~~~~D~vi~~vp~~~~---   73 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ--GAQ-ACENNQKV----AAASDIIFTSLPNAGI---   73 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTT--TCE-ECSSHHHH----HHHCSEEEECCSSHHH---
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--CCe-ecCCHHHH----HhCCCEEEEECCCHHH---
Confidence            45788999986 32 4566667789999999999877766543  111 11111010    124688886521 112   


Q ss_pred             ccccCCchHHHHHHHHH---HHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          129 ADKASHEPRLRLKAFFG---SLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~---~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                                 +..++.   .+...|++|..+ +......+...+.+.+.+.+.|
T Consensus        74 -----------~~~v~~~~~~l~~~l~~~~~v-v~~~~~~~~~~~~l~~~~~~~g  116 (301)
T 3cky_A           74 -----------VETVMNGPGGVLSACKAGTVI-VDMSSVSPSSTLKMAKVAAEKG  116 (301)
T ss_dssp             -----------HHHHHHSTTCHHHHSCTTCEE-EECCCCCHHHHHHHHHHHHHTT
T ss_pred             -----------HHHHHcCcchHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcC
Confidence                       344553   666778887654 4443344445666777776654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=80.73  E-value=8.6  Score=32.85  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=60.9

Q ss_pred             eEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|.=||||. |. ++..|+. |++|+++|.++..++.+.+..  +...  +..+.    -...|+|+..-...       
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g--~~~~--~~~~~----~~~~D~vi~~v~~~-------   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEF--GSEA--VPLER----VAEARVIFTCLPTT-------   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHH--CCEE--CCGGG----GGGCSEEEECCSSH-------
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCC--Cccc--CHHHH----HhCCCEEEEeCCCh-------
Confidence            577789987 33 4566777 999999999988776655431  1221  11111    13579888642211       


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG  180 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG  180 (291)
                            ..+..++..+...|++|..++ .+........+.+.+.+.+.|
T Consensus        67 ------~~~~~v~~~l~~~l~~~~~vv-~~s~~~~~~~~~l~~~~~~~g  108 (289)
T 2cvz_A           67 ------REVYEVAEALYPYLREGTYWV-DATSGEPEASRRLAERLREKG  108 (289)
T ss_dssp             ------HHHHHHHHHHTTTCCTTEEEE-ECSCCCHHHHHHHHHHHHTTT
T ss_pred             ------HHHHHHHHHHHhhCCCCCEEE-ECCCCCHHHHHHHHHHHHHcC
Confidence                  114456677777787776554 333334445556666666544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=80.70  E-value=7.3  Score=36.38  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             CeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           53 RLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        53 ~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      ++|.=||+|. |. ++..|++.|+.|+++|+++..++...+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g   44 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSG   44 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcC
Confidence            4677888875 32 4456667799999999999988877653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=80.69  E-value=7.1  Score=36.81  Aligned_cols=41  Identities=37%  Similarity=0.542  Sum_probs=34.1

Q ss_pred             CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      .++|.=||+|. |. ++..|++.|+.|+++|+++..++..++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~   50 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNG   50 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCC
Confidence            67999999996 44 5677778899999999999988887764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=80.43  E-value=7.7  Score=34.04  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCC------------HHHHHHHH----hcCCcceEEEccCCCCCC----
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDIS------------QSMLNIAL----EREVEGDLLLGDMGQGLG----  108 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis------------~~ml~~a~----~~~~~~~~~~~D~~~~~~----  108 (291)
                      +..||=.|++.|.   +...|++.|..|+++|.+            ...++.+.    .....+.++.+|+.+.-.    
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  125 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAV  125 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence            4578888877664   445666779999999986            44444332    223456788889855211    


Q ss_pred             C-----CCCcccEEEECCchh
Q 043626          109 L-----RPGVVDGAISISAVQ  124 (291)
Q Consensus       109 ~-----~~~~fD~Vis~~~l~  124 (291)
                      +     .-+.+|++|.+..+.
T Consensus       126 ~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          126 VDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             HHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCC
Confidence            0     014789999886653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=80.27  E-value=15  Score=32.31  Aligned_cols=105  Identities=18%  Similarity=0.070  Sum_probs=62.8

Q ss_pred             CeEEEEcCCC-ch-hHHHHHHcC-CeEEEEeCCH-------HHHHHHHhcCCcceEEEc-cCCCCCCCCCCcccEEEECC
Q 043626           53 RLLLDIGCGS-GL-SGETLSENG-HQWIGLDISQ-------SMLNIALEREVEGDLLLG-DMGQGLGLRPGVVDGAISIS  121 (291)
Q Consensus        53 ~~VLDiGcGs-G~-~~~~L~~~g-~~v~gvDis~-------~ml~~a~~~~~~~~~~~~-D~~~~~~~~~~~fD~Vis~~  121 (291)
                      .+|.=||+|. |. ++..|++.| +.|+++|.++       ..++.+.+..  +   .. +..+.    ....|+||+.-
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g--~---~~~s~~e~----~~~aDvVi~av   95 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELG--V---EPLDDVAG----IACADVVLSLV   95 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTT--C---EEESSGGG----GGGCSEEEECC
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCC--C---CCCCHHHH----HhcCCEEEEec
Confidence            4788899875 32 456666779 9999999997       4444443321  1   22 33221    13468888642


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      ..+.              ....+..+...|++|..+ +......+.....+...+...|.
T Consensus        96 p~~~--------------~~~~~~~i~~~l~~~~iv-v~~st~~p~~~~~~~~~l~~~g~  140 (317)
T 4ezb_A           96 VGAA--------------TKAVAASAAPHLSDEAVF-IDLNSVGPDTKALAAGAIATGKG  140 (317)
T ss_dssp             CGGG--------------HHHHHHHHGGGCCTTCEE-EECCSCCHHHHHHHHHHHHTSSC
T ss_pred             CCHH--------------HHHHHHHHHhhcCCCCEE-EECCCCCHHHHHHHHHHHHHcCC
Confidence            2211              234457777888887654 44445556666677777766553

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=80.26  E-value=7.3  Score=34.14  Aligned_cols=117  Identities=15%  Similarity=0.023  Sum_probs=65.0

Q ss_pred             eEEEEcCCCch--hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGSGL--SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGsG~--~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|-=||.|.=.  ....|++.|+.|++.|.++..++...+.   +-....+..+.    ...-|+||+.-.     +   
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~---G~~~~~s~~e~----~~~~dvvi~~l~-----~---   71 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKL---GATVVENAIDA----ITPGGIVFSVLA-----D---   71 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTT---TCEECSSGGGG----CCTTCEEEECCS-----S---
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc---CCeEeCCHHHH----HhcCCceeeecc-----c---
Confidence            67778887632  4566677899999999998765443322   11222222111    234688876521     1   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSS  193 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~  193 (291)
                          +......++..+...+++|+.+ +......+.....+...+...|.   .+++-|-+.
T Consensus        72 ----~~~~~~v~~~~~~~~~~~~~ii-id~sT~~p~~~~~~~~~~~~~g~---~~ldapVsG  125 (297)
T 4gbj_A           72 ----DAAVEELFSMELVEKLGKDGVH-VSMSTISPETSRQLAQVHEWYGA---HYVGAPIFA  125 (297)
T ss_dssp             ----HHHHHHHSCHHHHHHHCTTCEE-EECSCCCHHHHHHHHHHHHHTTC---EEEECCEEC
T ss_pred             ----hhhHHHHHHHHHHhhcCCCeEE-EECCCCChHHHHHHHHHHHhcCC---ceecCCcCC
Confidence                1111222345677888888754 45555677788888888888875   567777664

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.24  E-value=9.8  Score=32.59  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCH--HHHHHHHhcCCcceEEEccCCCCC----CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQ--SMLNIALEREVEGDLLLGDMGQGL----GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~--~ml~~a~~~~~~~~~~~~D~~~~~----~~~~~~fD~Vis~~~  122 (291)
                      +..+|=-|.++|.   ....|++.|..|+.+|.+.  ..++...+...++..+.+|+.+..    -+..+.+|++|.+..
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNAG   88 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNAG   88 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECCC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECCC
Confidence            5577777777764   4566777899999999873  455555555566788889986532    244578999998866


Q ss_pred             hhh
Q 043626          123 VQW  125 (291)
Q Consensus       123 l~~  125 (291)
                      +..
T Consensus        89 i~~   91 (247)
T 4hp8_A           89 IIR   91 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=80.14  E-value=8.2  Score=33.13  Aligned_cols=73  Identities=18%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCcceEEEccCCCCCC----C-----CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER-EVEGDLLLGDMGQGLG----L-----RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~-~~~~~~~~~D~~~~~~----~-----~~~~fD~Vi  118 (291)
                      +..||=.|++.|.   +...|++.|..|+.+|.++..++..... ...+.++.+|+.+.-.    +     .-+.+|++|
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  106 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLV  106 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4588888877664   4455667799999999998877655443 2346778889855211    0     014789999


Q ss_pred             ECCchh
Q 043626          119 SISAVQ  124 (291)
Q Consensus       119 s~~~l~  124 (291)
                      .+..+.
T Consensus       107 ~nAg~~  112 (277)
T 4dqx_A          107 NNAGFG  112 (277)
T ss_dssp             ECCCCC
T ss_pred             ECCCcC
Confidence            886654

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=80.04  E-value=14  Score=35.10  Aligned_cols=117  Identities=13%  Similarity=0.045  Sum_probs=67.3

Q ss_pred             CCeEEEEc-CCCchh--HHHHHHcCCeEEEEeCCH--HHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIG-CGSGLS--GETLSENGHQWIGLDISQ--SMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiG-cGsG~~--~~~L~~~g~~v~gvDis~--~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      ..+|.=|| ||+|.+  ...|.++|+.|.|.|...  .+.+...+.  .+.+..+.-...+   ...+|+||.+..+.. 
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~--gi~~~~G~~~~~~---~~~~d~vV~Spgi~~-   92 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQA--GVTIEEGYLIAHL---QPAPDLVVVGNAMKR-   92 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHT--TCEEEESCCGGGG---CSCCSEEEECTTCCT-
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHC--CCEEECCCCHHHc---CCCCCEEEECCCcCC-
Confidence            45777777 466764  566678899999999853  344444332  3556554321211   235899998776642 


Q ss_pred             ccccccCCchHHHHHHH----------HHHHHHhccCCcEEEEEEcCCCh-HHHHHHHHHHHHcCCCC
Q 043626          127 CNADKASHEPRLRLKAF----------FGSLYRCLARGARAVFQIYPESV-AQRELILGAAMRAGFAG  183 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~----------l~~l~~~LkpgG~lv~~~~~~~~-~~~~~i~~~~~~aGF~~  183 (291)
                             .+|.-  ..+          .+-+++.+.++..++..+....- ....++...|..+|+..
T Consensus        93 -------~~p~l--~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~  151 (524)
T 3hn7_A           93 -------GMDVI--EYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDA  151 (524)
T ss_dssp             -------TSHHH--HHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             -------CCHHH--HHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCc
Confidence                   12321  111          12234444445566666655443 34556777888888864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.02  E-value=7.8  Score=31.28  Aligned_cols=66  Identities=12%  Similarity=0.106  Sum_probs=43.6

Q ss_pred             eEEEEcCCCchhHHHH----HHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626           54 LLLDIGCGSGLSGETL----SENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus        54 ~VLDiGcGsG~~~~~L----~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      +||=.|+ +|.+|..+    ++.|+.|++++-++..+....   ..+.++.+|+.+.-.-.-..+|+||.+...
T Consensus         2 kvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             eEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            5777774 45555444    456899999999887665443   567889999854211111458999987655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	4e-07
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	6e-07
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	4e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	4e-04
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	4e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.002
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.002
d1g60a_	256	c.66.1.11 (A:) Methyltransferase mboII {Moraxella	0.003
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.004

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 16/163 (9%)

Query: 11  PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
           P+ + D   AR +     I D +++ +E    LL L        +LD+ CG+G+    L 
Sbjct: 18  PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 75

Query: 71  ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR-----------PGVVDGAIS 119
           E G     +D S  ML  AL+               +                  D  I 
Sbjct: 76  EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135

Query: 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162
           +          K         +    ++   +  G   V    
Sbjct: 136 LGNSFAHLPDSKGDQSEH---RLALKNIASMVRPGGLLVIDHR 175

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNI 88
           + +++ AL  +     +LD+  G G      +    + +  D+++ +L +
Sbjct: 5  AKLMQIAALKGNEE---VLDVATGGGHVANAFAPFVKKVVAFDLTEDILKV 52

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 5/132 (3%)

Query: 31  DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIAL 90
           D+  K     +    + ++ V    LD+ CG+G   E L         +D+SQ ML+ A 
Sbjct: 17  DVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE 76

Query: 91  EREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRC 150
            +     L      Q +          +    +                LK +F ++   
Sbjct: 77  NKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY-----IIDSDDLKKYFKAVSNH 131

Query: 151 LARGARAVFQIY 162
           L  G   +F I 
Sbjct: 132 LKEGGVFIFDIN 143

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSM 85
          P  LL++G   G     L E+ +    ++ S+  
Sbjct: 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSM 85
          +LDIG G+G +    S    + IG+D ++ M
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEM 50

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
          +L   CG       LS  G+  +G ++S++ +      
Sbjct: 24 VLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTE 61

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 55 LLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER 92
          +LD+GCG G         G  ++ G+DI++  +N A  R
Sbjct: 28 VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR 66

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 12/160 (7%)

Query: 36  LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE 95
           L+    ++LA      P   LD+GCG+G +   L+ NG+     D + + +      +  
Sbjct: 15  LTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAA 74

Query: 96  GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGA 155
             L                     I +   +             +     ++ RC   G 
Sbjct: 75  EGLDNLQTDLVDLNTLTFDGEYDFILSTVVMM------FLEAQTIPGLIANMQRCTKPGG 128

Query: 156 RAVF------QIYPESVAQRELILGAAMRAGFAGGVVVDY 189
             +         +P +V          +R  + G  ++ Y
Sbjct: 129 YNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKY 168

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 13/176 (7%)

Query: 14  FYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG 73
           +YD      Y      +  +    E   +  A  +    R +LD+ CG+G+    L+E G
Sbjct: 11  YYDTI----YRRRIERVKAEIDFVEEIFKEDAKRE---VRRVLDLACGTGIPTLELAERG 63

Query: 74  HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKAS 133
           ++ +GLD+ + ML +A  +  E         +   L+  V++ A                
Sbjct: 64  YEVVGLDLHEEMLRVARRKAKE------RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117

Query: 134 HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY 189
           +     L+  F  +   L  G   +          R+  +    + G    V++D+
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDW 173

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 9/191 (4%)

Query: 56  LDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114
           LD+GCG+G+     ++ G  + +G+D S+ +        +        + +G      + 
Sbjct: 40  LDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP 99

Query: 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---VAQREL 171
              + +   +W+             L A      + LA+G      I   S   V+    
Sbjct: 100 VEKVDVIISEWMGYFLLFESMLDSVLYA----KNKYLAKGGSVYPDICTISLVAVSDVNK 155

Query: 172 ILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSG 231
                       G  +     +    E +V    P ++ SE    K  D  + S  +   
Sbjct: 156 HADRIAFWDDVYGFKMSCMKKA-VIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEF 214

Query: 232 DEENRTVCISD 242
             +        
Sbjct: 215 SSDFTLKITRT 225

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 31  DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQW--IGLDISQSMLNI 88
           +    L  + ++ + + DD +    +D+G G G     ++   +     G++ +      
Sbjct: 134 ETSFDLVAQMIDEIKMTDDDL---FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY 190

Query: 89  ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK---ASHEPRLRLKAFFG 145
           A   + E    +   G+            +S    + + N       +      +     
Sbjct: 191 AETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLK 250

Query: 146 SLYRCLARGARAV 158
             +  +  G R V
Sbjct: 251 ERFANMKEGGRIV 263

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 39  RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
           R +   + P+D V    LD   GSG +     + G  +IG D++   +N A   
Sbjct: 204 RIIRASSNPNDLV----LDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 20/136 (14%)

Query: 35  KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALER 92
                  +   L         +D+G G G      +         G +I     ++ + +
Sbjct: 203 NFLSDVYQQCQLKKGDT---FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259

Query: 93  EVEGDLLLGDMGQGLG----------LRPGVVDGAISISAVQWLCNADKASHEPRLRLKA 142
             E        G  L           +    V   I    V  + N           L  
Sbjct: 260 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-----FLFDEDLNK 314

Query: 143 FFGSLYRCLARGARAV 158
               + +    G + +
Sbjct: 315 KVEKILQTAKVGCKII 330

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 14/97 (14%), Positives = 22/97 (22%), Gaps = 10/97 (10%)

Query: 5  PELIAPPEIFYDDTEARKY------TSSSRIIDIQAKLSERALELLAL--PDDGVPRLLL 56
          P   A     Y   E R Y           + +       +   L       +   R L+
Sbjct: 1  PGQAAVASA-YQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLI 59

Query: 57 DIGCGSG-LSGETLSENGHQWIGLDISQSMLNIALER 92
          DIG G       +   +       D  +         
Sbjct: 60 DIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRW 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.85
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.84
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.82
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.81
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.8
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.79
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.77
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.77
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.77
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.76
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.75
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.75
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.73
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.72
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.71
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.7
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.67
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.66
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.66
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.65
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.64
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.63
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.61
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.58
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.57
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.56
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.56
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.55
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.55
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.55
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.51
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.47
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.41
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.4
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.39
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.37
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.36
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.35
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.27
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.26
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.21
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.21
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.19
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.19
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.17
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.13
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.11
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.1
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.1
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.08
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.05
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.02
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.99
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.94
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.91
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.9
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.88
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.82
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.81
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.8
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.79
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.78
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.77
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.73
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.73
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.69
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.68
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.67
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.65
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.64
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.62
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.6
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.57
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.48
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.43
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.34
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.32
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.3
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.25
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.23
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.04
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.94
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.88
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.46
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.42
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.33
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.2
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.13
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.03
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.98
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.96
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.95
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.76
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.59
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.56
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.53
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.36
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.3
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.11
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.08
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.07
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.97
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.23
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.13
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.13
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.04
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.99
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.9
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.3
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.34
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.27
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.04
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.68
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.59
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.46
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.26
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.86
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.7
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.59
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.34
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.51
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	90.41
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.99
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	89.56
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	89.43
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.23
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.99
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.98
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.73
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.46
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	88.29
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.61
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.47
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	86.35
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.22
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.2
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.17
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.99
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.71
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	81.61
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	81.44
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	81.37
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.17

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=2e-22  Score=172.81  Aligned_cols=109  Identities=17%  Similarity=0.280  Sum_probs=98.1

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPG  112 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~  112 (291)
                      .++++++.+.+   +.+|||||||+|.++..|++.|.+++|+|+|+.|++.|+++.     .++.++++|+ ..+||+++
T Consensus         5 ~~ll~~~~l~~---~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~-~~l~~~~~   80 (231)
T d1vl5a_           5 AKLMQIAALKG---NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDE   80 (231)
T ss_dssp             HHHHHHHTCCS---CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTT
T ss_pred             HHHHHhcCCCC---cCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccc-cccccccc
Confidence            57888888887   789999999999999999999999999999999999997753     4578999998 55899999


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +||+|+|..+++|+.+           ...++.+++++|+|||++++..
T Consensus        81 ~fD~v~~~~~l~~~~d-----------~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPN-----------PASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             CEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccccCC-----------HHHHHHHHHHhcCCCcEEEEEe
Confidence            9999999999999987           7789999999999999999853

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.1e-21  Score=169.14  Aligned_cols=112  Identities=17%  Similarity=0.207  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~  109 (291)
                      ...+.+++.+.+++   +.+|||||||+|.++..|++.+.+++|||+|+.|++.|+++.     .++.++++|+ ..+||
T Consensus         3 ~~~~~l~~~~~~~~---~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~-~~~~~   78 (234)
T d1xxla_           3 HSLGLMIKTAECRA---EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPF   78 (234)
T ss_dssp             HHHHHHHHHHTCCT---TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCS
T ss_pred             hHHHHHHHHhCCCC---CCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccc-ccccc
Confidence            34566888889888   789999999999999999999999999999999999998764     3588999998 55899


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      ++++||+|+|..+++|+++           +..+|++++++|+|||++++..
T Consensus        79 ~~~~fD~v~~~~~l~~~~d-----------~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSD-----------VRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccceeeeeceeecccC-----------HHHHHHHHHHeeCCCcEEEEEE
Confidence            9999999999999999987           7799999999999999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=5.3e-21  Score=164.69  Aligned_cols=132  Identities=24%  Similarity=0.369  Sum_probs=103.2

Q ss_pred             ccCCchhhccccccchh--HHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 043626           13 IFYDDTEARKYTSSSRI--IDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIAL   90 (291)
Q Consensus        13 ~fy~~~~a~~Y~~~~~~--~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~   90 (291)
                      .||+ ..|..|+.....  ..........++..... .   +.+|||||||+|..+..|++.|.+|+|+|+|+.|++.|+
T Consensus         7 ~~yd-~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~   81 (246)
T d2avna1           7 EFYD-RIARAYDSMYETPKWKLYHRLIGSFLEEYLK-N---PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR   81 (246)
T ss_dssp             HHHH-HHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC-S---CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHhccccchHHHHHHHHHHHHhcC-C---CCEEEEECCCCchhcccccccceEEEEeecccccccccc
Confidence            3565 567788753221  22233444444433322 2   569999999999999999999999999999999999999


Q ss_pred             hcCCcceEEEccCCCCCCCCCCcccEEEEC-CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626           91 EREVEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus        91 ~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ++... .++.+|+ ..+++++++||+|+|. .+++|++|           ...+|++++++|||||.+++++.
T Consensus        82 ~~~~~-~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~~d-----------~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          82 EKGVK-NVVEAKA-EDLPFPSGAFEAVLALGDVLSYVEN-----------KDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             HHTCS-CEEECCT-TSCCSCTTCEEEEEECSSHHHHCSC-----------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccc-ccccccc-cccccccccccceeeecchhhhhhh-----------HHHHHHHHHhhcCcCcEEEEEEC
Confidence            98654 4678888 5689999999999986 68999987           67899999999999999999873

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.84  E-value=1.9e-20  Score=165.99  Aligned_cols=136  Identities=16%  Similarity=0.026  Sum_probs=107.2

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      +.+.+.....+++   +.+|||||||+|.++..|+++ +..|+|||+|+.|++.|+++.      ..+.++++|+ ..+|
T Consensus        55 ~~~~l~~~~~l~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l~  130 (282)
T d2o57a1          55 LASELAMTGVLQR---QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIP  130 (282)
T ss_dssp             HHHHHHHTTCCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCS
T ss_pred             HHHHHHHhcCCCC---CCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccc-cccc
Confidence            3344444445665   789999999999999999986 789999999999999998864      2478999998 5589


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC----Ch---------------HHH
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE----SV---------------AQR  169 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~----~~---------------~~~  169 (291)
                      +++++||+|+|..+++|+++           ...+|++++++|+|||++++..+..    ..               ...
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPD-----------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSL  199 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCH
T ss_pred             ccccccchhhccchhhhccC-----------HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCH
Confidence            99999999999999999987           6789999999999999999863211    00               023


Q ss_pred             HHHHHHHHHcCCCCcEE
Q 043626          170 ELILGAAMRAGFAGGVV  186 (291)
Q Consensus       170 ~~i~~~~~~aGF~~~~~  186 (291)
                      ..+..++.++||....+
T Consensus       200 ~~~~~~l~~~Gf~~i~~  216 (282)
T d2o57a1         200 GLYRSLAKECGLVTLRT  216 (282)
T ss_dssp             HHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHcCCceEEE
Confidence            45567778888865333

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=4.9e-20  Score=156.56  Aligned_cols=101  Identities=25%  Similarity=0.394  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      ..+|||||||+|..+..|++.+..++|+|+|+.|++.|+++.    ..+.++++|+ ..+++..++||+|+|..+++|+.
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~-~~l~~~~~~fD~I~~~~~l~~~~  116 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDSIVHFE  116 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT-TSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccccc-ccccccCcCceEEEEecchhhCC
Confidence            569999999999999999999999999999999999998764    3467888998 55899999999999999999985


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +         ..+..+|++++++|||||++++.+.
T Consensus       117 ~---------~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         117 P---------LELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             H---------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             h---------hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            3         2377899999999999999998774

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1.1e-19  Score=153.31  Aligned_cols=114  Identities=24%  Similarity=0.317  Sum_probs=96.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      ..+|||||||+|.++..+.    .++|||+|+.|++.|+++  .+.++++|+ ..+++.+++||+|+|+.+|+|+.+   
T Consensus        37 ~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--~~~~~~~d~-~~l~~~~~~fD~I~~~~~l~h~~d---  106 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--GVFVLKGTA-ENLPLKDESFDFALMVTTICFVDD---  106 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--TCEEEECBT-TBCCSCTTCEEEEEEESCGGGSSC---
T ss_pred             CCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--ccccccccc-cccccccccccccccccccccccc---
Confidence            4589999999999988874    468999999999999986  478999998 568898999999999999999977   


Q ss_pred             cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---------------------HHHHHHHHHHHHcCCCC
Q 043626          132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---------------------AQRELILGAAMRAGFAG  183 (291)
Q Consensus       132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---------------------~~~~~i~~~~~~aGF~~  183 (291)
                              +..+|.+++++|+|||.+++.+.....                     .....+.+++.++||+.
T Consensus       107 --------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~  171 (208)
T d1vlma_         107 --------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEE  171 (208)
T ss_dssp             --------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred             --------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeE
Confidence                    678999999999999999997532211                     13567888899999975

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=3.9e-19  Score=155.60  Aligned_cols=139  Identities=18%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc---ceEEEccCCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE---GDLLLGDMGQGL  107 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~---~~~~~~D~~~~~  107 (291)
                      +.......+++.+....   ..+|||+|||+|.++..|+.. +..|++||+|+.|++.|+++...   ++++++|+ +.+
T Consensus        77 ~d~~~s~~fl~~l~~~~---~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~-~~~  152 (254)
T d1xtpa_          77 VDIEGSRNFIASLPGHG---TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM-ETA  152 (254)
T ss_dssp             HHHHHHHHHHHTSTTCC---CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG-GGC
T ss_pred             hhHHHHHHHHhhCCCCC---CCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccc-ccc
Confidence            33345566677665544   679999999999999887755 57899999999999999987643   68899998 567


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------hHHHHHHHH
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------VAQRELILG  174 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------~~~~~~i~~  174 (291)
                      ++++++||+|+|..+++|+.+.         .+..+|++++++|+|||.+++......             ....+.+.+
T Consensus       153 ~~~~~~fD~I~~~~vl~hl~d~---------d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~  223 (254)
T d1xtpa_         153 TLPPNTYDLIVIQWTAIYLTDA---------DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR  223 (254)
T ss_dssp             CCCSSCEEEEEEESCGGGSCHH---------HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred             ccCCCccceEEeeccccccchh---------hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHH
Confidence            8888999999999999999652         267899999999999999998532110             013567888


Q ss_pred             HHHHcCCCC
Q 043626          175 AAMRAGFAG  183 (291)
Q Consensus       175 ~~~~aGF~~  183 (291)
                      ++.++||..
T Consensus       224 l~~~aGf~i  232 (254)
T d1xtpa_         224 LFNESGVRV  232 (254)
T ss_dssp             HHHHHTCCE
T ss_pred             HHHHcCCEE
Confidence            999999975

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=1.5e-19  Score=156.50  Aligned_cols=134  Identities=23%  Similarity=0.414  Sum_probs=102.2

Q ss_pred             cCCchhhccccccch--hHHH--HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHH
Q 043626           14 FYDDTEARKYTSSSR--IIDI--QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA   89 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~--~~~i--q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a   89 (291)
                      ||+ ..|..|+..-.  ...+  +......++..+...+   ..+|||||||+|..+..|++.|.+|+|||+|+.|++.|
T Consensus         4 ~~~-~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a   79 (251)
T d1wzna1           4 LYT-LLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKRE---VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVA   79 (251)
T ss_dssp             GGT-TTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSC---CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             hhH-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC---CCEEEEeCCCCCccchhhcccceEEEEEeecccccccc
Confidence            444 67788877421  1112  2233444555555554   67999999999999999999999999999999999999


Q ss_pred             HhcCC----cceEEEccCCCCCCCCCCcccEEEEC-CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626           90 LEREV----EGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus        90 ~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +++..    .+.+.++|+ ..++++ ++||+|+|. ++++|+..         .....+|++++++|+|||++++.+.
T Consensus        80 ~~~~~~~~~~i~~~~~d~-~~l~~~-~~fD~I~~~~~~~~~~~~---------~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1          80 RRKAKERNLKIEFLQGDV-LEIAFK-NEFDAVTMFFSTIMYFDE---------EDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             HHHHHHTTCCCEEEESCG-GGCCCC-SCEEEEEECSSGGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccchheehhh-hhcccc-cccchHhhhhhhhhcCCh---------HHHHHHHHHHHHHcCCCcEEEEEec
Confidence            98753    478999998 557765 689999996 57777622         2367899999999999999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-19  Score=153.56  Aligned_cols=122  Identities=18%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      ..+|||||||+|..+..|+.. +.+|+|||+|+.|++.|+++...     +.++++|+ ..+++.+++||+|++..+++|
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~~l~h  139 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVIGH  139 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCGGG
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            579999999999999988755 47899999999999999987643     58899998 557788899999999999999


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CC----------hHHHHHHHHHHHHcCCCC
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ES----------VAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~----------~~~~~~i~~~~~~aGF~~  183 (291)
                      +++         ..+..++++++++|+|||.+++....  ..          ....+.+.+++.++||..
T Consensus       140 ~~~---------~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~i  200 (222)
T d2ex4a1         140 LTD---------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL  200 (222)
T ss_dssp             SCH---------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred             chh---------hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEE
Confidence            965         22568999999999999999986321  11          014667889999999975

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.9e-19  Score=154.14  Aligned_cols=135  Identities=18%  Similarity=0.128  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQ  105 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~  105 (291)
                      .......+.+.+.+.+   +.+|||||||+|..+..|++. +..++|||+|+.|++.|+++.      ..++++++|+.+
T Consensus        18 ~~~~~~~l~~~~~l~p---g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          18 TEEKYATLGRVLRMKP---GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             CHHHHHHHHHHTCCCT---TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CHHHHHHHHHHcCCCC---CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            3356778889999987   789999999999999999876 689999999999999998863      237899999855


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----CC--------------h
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----ES--------------V  166 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----~~--------------~  166 (291)
                       + +.+++||+|+|..+++|+.|           +..++.+++++|||||++++....     ..              .
T Consensus        95 -~-~~~~~fD~v~~~~~~~~~~d-----------~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (245)
T d1nkva_          95 -Y-VANEKCDVAACVGATWIAGG-----------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDF  161 (245)
T ss_dssp             -C-CCSSCEEEEEEESCGGGTSS-----------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGS
T ss_pred             -c-cccCceeEEEEEehhhccCC-----------HHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCccc
Confidence             3 35789999999999999987           678999999999999999996321     00              1


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 043626          167 AQRELILGAAMRAGFAG  183 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~  183 (291)
                      .....+...+.++||..
T Consensus       162 ~~~~~~~~~~~~aG~~~  178 (245)
T d1nkva_         162 LTLPGLVGAFDDLGYDV  178 (245)
T ss_dssp             CCHHHHHHHHHTTTBCC
T ss_pred             CCHHHHHHHHHHcCCEE
Confidence            13455778888999975

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=5.2e-19  Score=151.42  Aligned_cols=97  Identities=22%  Similarity=0.275  Sum_probs=80.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~  121 (291)
                      +.+|||||||+|..+..|++.    +.+|+|+|+|+.|++.|+++..      .+.+..+|+   .+++.+.+|+|+|++
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMVILNF  116 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---TTCCCCSEEEEEEES
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---hccccccceeeEEee
Confidence            679999999999999999874    5799999999999999998632      245566665   345567899999999


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +++|+...+         ...+|++++++|+|||.+++.
T Consensus       117 ~l~~~~~~d---------~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         117 TLQFLPPED---------RIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             CGGGSCGGG---------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccccChhh---------HHHHHHHHHHhCCCCceeecc
Confidence            999985322         668999999999999999985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.77  E-value=1.4e-18  Score=148.82  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-ceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE-GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      +.+|||||||+|.++..|++.|.+|+|||+|+.|++.|+.+... +.++.+|+ +.+++ +++||+|+|..+++|+.+  
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-~~~~~-~~~fD~I~~~~vleh~~d--   96 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF-EDAQL-PRRYDNIVLTHVLEHIDD--   96 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG-GGCCC-SSCEEEEEEESCGGGCSS--
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccc-ccccc-ccccccccccceeEecCC--
Confidence            55899999999999999999999999999999999999988654 78888887 44454 689999999999999987  


Q ss_pred             ccCCchHHHHHHHHHHHH-HhccCCcEEEEEE
Q 043626          131 KASHEPRLRLKAFFGSLY-RCLARGARAVFQI  161 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~-~~LkpgG~lv~~~  161 (291)
                               ...++.+++ ++|+|||.+++.+
T Consensus        97 ---------~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          97 ---------PVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             ---------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---------HHHHHHHHHHHhcCCCceEEEEe
Confidence                     668899998 7999999999976

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=3.3e-18  Score=151.70  Aligned_cols=118  Identities=24%  Similarity=0.279  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc------ceEEE
Q 043626           28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE------GDLLL  100 (291)
Q Consensus        28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~------~~~~~  100 (291)
                      .+...|..+.+.+++.|.+++   +.+|||||||+|.++..+++. |..|+|||+|+.+++.|+++..+      +.+..
T Consensus        32 tL~~AQ~~k~~~~~~~l~l~~---g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~  108 (280)
T d2fk8a1          32 TLEEAQYAKVDLNLDKLDLKP---GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL  108 (280)
T ss_dssp             CHHHHHHHHHHHHHTTSCCCT---TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE
T ss_pred             CHHHHHHHHHHHHHHHcCCCC---CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhh
Confidence            467889999999999999887   889999999999999999876 89999999999999999886532      45555


Q ss_pred             ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .|..    ..+++||.|+|+.+++|+...         .+..+|+.++++|||||+++++.
T Consensus       109 ~d~~----~~~~~fD~i~si~~~eh~~~~---------~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         109 QGWE----DFAEPVDRIVSIEAFEHFGHE---------NYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SCGG----GCCCCCSEEEEESCGGGTCGG---------GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhh----hhccchhhhhHhhHHHHhhhh---------hHHHHHHHHHhccCCCceEEEEE
Confidence            5642    225799999999999999542         26799999999999999999974

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=4.8e-18  Score=151.39  Aligned_cols=127  Identities=21%  Similarity=0.247  Sum_probs=103.7

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc------ceEE
Q 043626           27 SRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE------GDLL   99 (291)
Q Consensus        27 ~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~------~~~~   99 (291)
                      ..+...|..+.+.+++.+.+++   +.+|||||||.|.++..+++. |..|+|+++|+.+++.++++...      +.+.
T Consensus        40 ~tL~~Aq~~k~~~~~~~l~l~~---G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~  116 (291)
T d1kpia_          40 MTLEEAQYAKRKLALDKLNLEP---GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR  116 (291)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCC---CCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhh
Confidence            3477889999999999999987   889999999999999988865 89999999999999998876432      4555


Q ss_pred             EccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       100 ~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      ..|.    ++.+++||.|+|+.+++|+++....  .-.+.+..+|+.++++|+|||++++++.
T Consensus       117 ~~d~----~~~~~~fD~i~sie~~eH~~~~~~~--~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         117 IQGW----EEFDEPVDRIVSLGAFEHFADGAGD--AGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             ECCG----GGCCCCCSEEEEESCGGGTTCCSSC--CSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             hhcc----cccccccceEeechhHHhcchhhhh--hHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence            5554    4557899999999999999763211  1112368999999999999999999764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.76  E-value=3.6e-19  Score=154.26  Aligned_cols=101  Identities=24%  Similarity=0.329  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEEC-Cchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~~l  126 (291)
                      +.+|||||||+|..+..|++.|.+++|||+|+.||+.|+++.    .++.++++|+.. +++ +++||+|+|. .+++|+
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~i~~~~~~~~~~  115 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LNI-NRKFDLITCCLDSTNYI  115 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CCC-SCCEEEEEECTTGGGGC
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhh-hcc-cccccccceeeeeeecc
Confidence            579999999999999999999999999999999999998764    357899999843 554 5799999986 678887


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .+        ...+..+|++++++|+|||.+++.+.
T Consensus       116 ~~--------~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         116 ID--------SDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CS--------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CC--------HHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            54        22377899999999999999999774

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.76  E-value=1.3e-18  Score=144.34  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=92.0

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-----------------ceEEEcc
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE-----------------GDLLLGD  102 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-----------------~~~~~~D  102 (291)
                      .+..|.+++   +.+|||+|||+|..+..|+++|..|+|+|+|+.|++.|+++...                 ..++.+|
T Consensus        12 ~~~~l~~~~---~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          12 YWSSLNVVP---GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHHCCCT---TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHcCCCC---CCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            456677776   78999999999999999999999999999999999999986532                 4678888


Q ss_pred             CCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          103 MGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       103 ~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      +....+.....||+|++..+++|+..         .....+++.++++|||||.+++..+
T Consensus        89 ~~~l~~~~~~~~D~i~~~~~l~~l~~---------~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          89 FFALTARDIGHCAAFYDRAAMIALPA---------DMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCH---------HHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             ccccccccccceeEEEEEeeeEecch---------hhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            75533344578999999999999854         2367899999999999999887653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=5.4e-18  Score=142.31  Aligned_cols=101  Identities=21%  Similarity=0.282  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||||||+|..+..|+++|.+|+|+|+|+.|++.|+++.     ..+.+...|+.. +++ +++||+|+|..+++|+
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~I~~~~~~~~~  108 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT-LTF-DGEYDFILSTVVMMFL  108 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT-CCC-CCCEEEEEEESCGGGS
T ss_pred             CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccc-ccc-cccccEEEEeeeeecC
Confidence            569999999999999999999999999999999999887654     236788889844 343 6899999999999998


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      +..         ....+++.++++|+|||.+++....
T Consensus       109 ~~~---------~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         109 EAQ---------TIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CTT---------HHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CHH---------HHHHHHHHHHHHcCCCcEEEEEEec
Confidence            542         2678999999999999999987543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.75  E-value=8.5e-18  Score=146.32  Aligned_cols=104  Identities=19%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||||||+|..+..+++.+ ..|+|+|+|+.||+.|+++..      .+.+.++|+........++||+|+|.+++|
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~  104 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH  104 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred             cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceee
Confidence            5799999999999999999887 689999999999999987642      367899998443222467899999999999


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      |+.+       +...+..+|.+++++|+|||++++.+.
T Consensus       105 ~~~~-------~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         105 YAFS-------TSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             GGGS-------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ecCC-------CHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            9865       455688999999999999999999873

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=2.3e-17  Score=146.48  Aligned_cols=120  Identities=24%  Similarity=0.300  Sum_probs=102.2

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEE
Q 043626           27 SRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLL   99 (291)
Q Consensus        27 ~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~   99 (291)
                      ..+...|..+.+.+++.|.+.+   +.+|||||||.|..+..+++. |..|+||++|+..++.|+++..      .+.+.
T Consensus        41 ~tL~eAQ~~k~~~~~~~l~l~~---G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~  117 (285)
T d1kpga_          41 MTLQEAQIAKIDLALGKLGLQP---GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVL  117 (285)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCT---TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHcCCCC---CCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHH
Confidence            3467889999999999999987   889999999999999987765 7999999999999999987642      35778


Q ss_pred             EccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       100 ~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .+|. ..+   +++||.|+|+.+++|+...+         ...+|+.++++|+|||++++++.
T Consensus       118 ~~d~-~~~---~~~fD~i~si~~~eh~~~~~---------~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         118 LAGW-EQF---DEPVDRIVSIGAFEHFGHER---------YDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             ESCG-GGC---CCCCSEEEEESCGGGTCTTT---------HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             Hhhh-hcc---cccccceeeehhhhhcCchh---------HHHHHHHHHhhcCCCCcEEEEEE
Confidence            8886 323   47999999999999996422         67899999999999999998754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=6.6e-18  Score=149.65  Aligned_cols=111  Identities=20%  Similarity=0.336  Sum_probs=91.0

Q ss_pred             HHHHHHHHHh-CCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCC
Q 043626           35 KLSERALELL-ALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL-~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~  106 (291)
                      .+.+.+++.+ .+.+   +.+|||||||+|.++..|++.   +..|+|+|+|+.|++.|+++..    ++.++++|+. .
T Consensus        13 d~l~~l~~~~~~~~~---~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~   88 (281)
T d2gh1a1          13 DYVSFLVNTVWKITK---PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-E   88 (281)
T ss_dssp             HHHHHHHHTTSCCCS---CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-T
T ss_pred             HHHHHHHHHHhccCC---cCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccc-c
Confidence            3445555544 3333   789999999999999999875   5789999999999999987643    4788999984 4


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      +++ +++||+|+|..+++|+.+           +..++++++++|||||.+++..
T Consensus        89 ~~~-~~~fD~v~~~~~l~~~~d-----------~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          89 IEL-NDKYDIAICHAFLLHMTT-----------PETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             CCC-SSCEEEEEEESCGGGCSS-----------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccc-cCCceEEEEehhhhcCCC-----------HHHHHHHHHHHcCcCcEEEEEE
Confidence            666 468999999999999987           6689999999999999998753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=143.55  Aligned_cols=117  Identities=14%  Similarity=0.129  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-------------------
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-------------------   94 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-------------------   94 (291)
                      ..+.+.+.+++.+++   +.+|||+|||+|..+..|++.|+.|+|||+|+.||+.|+++..                   
T Consensus        31 ~~l~~~~~~~l~~~~---~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          31 QLLKKHLDTFLKGKS---GLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             HHHHHHHHHHHTTCC---SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            345556667777766   7799999999999999999999999999999999999987542                   


Q ss_pred             ---cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626           95 ---EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus        95 ---~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                         .++++++|+....+...+.||+|+...+++|+..++         ...+++.++++|+|||++++.++
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~---------r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD---------RKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG---------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh---------hHHHHHHHHhhcCCcceEEEEEc
Confidence               367888998554456688999999999999985422         56899999999999999887654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.3e-17  Score=143.42  Aligned_cols=109  Identities=21%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL  109 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~  109 (291)
                      +...+...+.+.+..+    +.+|||||||+|.++..|++.+  ..++|+|+|+.|++.|+++..++.++++|+ ..+|+
T Consensus        69 l~~~~~~~l~~~~~~~----~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~-~~l~~  143 (268)
T d1p91a_          69 LRDAIVAQLRERLDDK----ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPF  143 (268)
T ss_dssp             HHHHHHHHHHHHSCTT----CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSB
T ss_pred             HHHHHHHHHHHhcCCC----CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh-hhccC
Confidence            3444444444444332    6799999999999999999984  699999999999999999999999999998 56899


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      .+++||+|+++.+++|+                  .+++++|||||.+++.+..
T Consensus       144 ~~~sfD~v~~~~~~~~~------------------~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         144 SDTSMDAIIRIYAPCKA------------------EELARVVKPGGWVITATPG  179 (268)
T ss_dssp             CTTCEEEEEEESCCCCH------------------HHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEeecCCHHHH------------------HHHHHHhCCCcEEEEEeeC
Confidence            99999999998887653                  4689999999999998753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-17  Score=142.43  Aligned_cols=141  Identities=15%  Similarity=0.062  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcc-----------------
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEG-----------------   96 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~-----------------   96 (291)
                      .+...+.+++..... .+.+|||||||+|..+..++..+ ..|+|+|+|+.|++.|+++....                 
T Consensus        36 ~~~~~~~~~~~~~~~-~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~  114 (257)
T d2a14a1          36 FNLECLHKTFGPGGL-QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELE  114 (257)
T ss_dssp             HHHHHHHHHHSTTSC-CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccCC-CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhc
Confidence            344455555543221 26799999999999888887776 58999999999999998764210                 


Q ss_pred             ------------------eEEEccCCC---CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCc
Q 043626           97 ------------------DLLLGDMGQ---GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGA  155 (291)
Q Consensus        97 ------------------~~~~~D~~~---~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG  155 (291)
                                        .....+...   ..++..++||+|++.++++|++.       ....+..++++++++|||||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~-------~~~~~~~~l~~i~~~LkpGG  187 (257)
T d2a14a1         115 GNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC-------SLDAYRAALCNLASLLKPGG  187 (257)
T ss_dssp             TCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-------SHHHHHHHHHHHHTTEEEEE
T ss_pred             cccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcc-------cHHHHHHHHHHHHhccCCCc
Confidence                              112222211   23567889999999999999964       23347789999999999999


Q ss_pred             EEEEEEcCC-------------ChHHHHHHHHHHHHcCCCC
Q 043626          156 RAVFQIYPE-------------SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       156 ~lv~~~~~~-------------~~~~~~~i~~~~~~aGF~~  183 (291)
                      .+++..+..             .....+.+.+++.++||+.
T Consensus       188 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  228 (257)
T d2a14a1         188 HLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI  228 (257)
T ss_dssp             EEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             EEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEE
Confidence            999964321             1235678899999999985

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=7.8e-17  Score=134.11  Aligned_cols=129  Identities=15%  Similarity=0.122  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~  108 (291)
                      ++...++..+.+.+   +.+|||||||+|.++..++..+.+|+|+|+++.|++.|+++.      .+++++++|+.+ ..
T Consensus        20 eir~~il~~l~~~~---g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~-~~   95 (186)
T d1l3ia_          20 EVRCLIMCLAEPGK---NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL   95 (186)
T ss_dssp             HHHHHHHHHHCCCT---TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH
T ss_pred             HHHHHHHHhcCCCC---CCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh-cc
Confidence            55667778888876   789999999999999999998899999999999999999874      247889999733 44


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +....||.|++....++              +..++..+.+.|+|||++++...  ..++...+...+...||..
T Consensus        96 ~~~~~~D~v~~~~~~~~--------------~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGE--------------LQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             TTSCCEEEEEESCCTTC--------------HHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTCCC
T ss_pred             cccCCcCEEEEeCcccc--------------chHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCCCe
Confidence            55689999999876654              45789999999999999998764  3345666778888888865

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=1.2e-16  Score=137.52  Aligned_cols=152  Identities=12%  Similarity=0.105  Sum_probs=111.6

Q ss_pred             HHHHHHHH---HhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCC
Q 043626           35 KLSERALE---LLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---EGDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~le---lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~  106 (291)
                      .++..++.   .|.+.+   +.+|||||||+|..+..|++.+  ..|+|||+|+.|++.+.++..   ++..+..|....
T Consensus        58 klaA~i~~gl~~l~ikp---G~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~  134 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKR---DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP  134 (230)
T ss_dssp             HHHHHHHTTCCCCCCCT---TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG
T ss_pred             HHHHHHHhhHHhCCCCC---CCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC
Confidence            44444444   444554   7899999999999999999875  789999999999999987643   467788887665


Q ss_pred             CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-------ChHHHHHHHHHHHHc
Q 043626          107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-------SVAQRELILGAAMRA  179 (291)
Q Consensus       107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-------~~~~~~~i~~~~~~a  179 (291)
                      .++.+..+|++++...++|..+           ...++.++.+.|||||.+++.+...       .....+.+.+.+.++
T Consensus       135 ~~~~~~~~~v~~i~~~~~~~~~-----------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~a  203 (230)
T d1g8sa_         135 QEYANIVEKVDVIYEDVAQPNQ-----------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAG  203 (230)
T ss_dssp             GGGTTTCCCEEEEEECCCSTTH-----------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccceeEEeeccccchHH-----------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHc
Confidence            5566778888777777776654           6788999999999999999864321       123456677888999


Q ss_pred             CCCCcEEEeCCCCCCCCcEEEEE
Q 043626          180 GFAGGVVVDYPHSSKSRKEFLVL  202 (291)
Q Consensus       180 GF~~~~~~~~p~~~~~~~~~l~l  202 (291)
                      ||+....++....  ...+++++
T Consensus       204 GF~ive~idL~py--~~~H~~vv  224 (230)
T d1g8sa_         204 GFKIVDEVDIEPF--EKDHVMFV  224 (230)
T ss_dssp             TEEEEEEEECTTT--STTEEEEE
T ss_pred             CCEEEEEecCCCC--cCCeEEEE
Confidence            9987555565222  23455554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=6.1e-17  Score=141.42  Aligned_cols=114  Identities=25%  Similarity=0.276  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +.+|||+|||+|.++..+++.|.+|+|+|+|+.|++.|+++.    ....++.+|+..  .++.++||+|+++...+.  
T Consensus       121 g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~--~~~~~~fD~V~ani~~~~--  196 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLYAEL--  196 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECCHHH--
T ss_pred             cCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc--cccccccchhhhcccccc--
Confidence            679999999999999999999999999999999999998754    346788888744  344689999999865554  


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                                  +..++..+.++|||||+++++-..  ..+...+.+.+.++||..
T Consensus       197 ------------l~~l~~~~~~~LkpGG~lilSgil--~~~~~~v~~~~~~~Gf~~  238 (254)
T d2nxca1         197 ------------HAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFRP  238 (254)
T ss_dssp             ------------HHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCEE
T ss_pred             ------------HHHHHHHHHHhcCCCcEEEEEecc--hhhHHHHHHHHHHCCCEE
Confidence                        457889999999999999996322  245678888999999974

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.66  E-value=3.7e-16  Score=136.06  Aligned_cols=141  Identities=18%  Similarity=0.164  Sum_probs=106.4

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL  107 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~  107 (291)
                      ....+++.+.+..   ..+|||||||+|.++..|++.+  ..++++|+ +.+++.++++..      .+.++.+|+.+..
T Consensus        68 ~~~~~~~~~d~~~---~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~  143 (253)
T d1tw3a2          68 AFDAPAAAYDWTN---VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL  143 (253)
T ss_dssp             TTHHHHHHSCCTT---CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             HHHHHHhhcCCcc---CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc
Confidence            3456677777665   6799999999999999999884  78999998 568888876542      3789999985432


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh---------------------
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV---------------------  166 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~---------------------  166 (291)
                         +.+||+|++.+++||+.+         .....+|++++++|+|||++++.......                     
T Consensus       144 ---~~~~D~v~~~~vlh~~~d---------~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g  211 (253)
T d1tw3a2         144 ---PRKADAIILSFVLLNWPD---------HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGG  211 (253)
T ss_dssp             ---SSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSC
T ss_pred             ---ccchhheeeccccccCCc---------hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCC
Confidence               467999999999999855         22568899999999999999985332110                     


Q ss_pred             --HHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          167 --AQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       167 --~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                        ...+++..++.++||....+...|..
T Consensus       212 ~~rt~~e~~~ll~~AGf~~~~v~~~~~p  239 (253)
T d1tw3a2         212 ALRTREKWDGLAASAGLVVEEVRQLPSP  239 (253)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEEEEECS
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEEECCCC
Confidence              02456778899999987555555544

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=2.2e-16  Score=132.21  Aligned_cols=113  Identities=16%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-------CcceEEEccCCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-------VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-------~~~~~~~~D~~~~~~~  109 (291)
                      ++.+++.|...+   +.+|||||||+|.++..++..+..++++|+|+.+++.|+++.       ..+.++.+|+.+  ++
T Consensus        41 t~lLi~~l~~~~---~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~--~~  115 (194)
T d1dusa_          41 TKILVENVVVDK---DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE--NV  115 (194)
T ss_dssp             HHHHHHHCCCCT---TCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT--TC
T ss_pred             HHHHHHhCCcCC---CCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh--hh
Confidence            455777777665   789999999999999999999999999999999999998753       236888899854  45


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .+++||+|+|+.++++..+          ....++..+.++|+|||.+++.....
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKE----------VLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHH----------HHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             ccCCceEEEEcccEEecch----------hhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            5789999999988765422          25689999999999999998876544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.8e-16  Score=140.77  Aligned_cols=117  Identities=19%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCC---
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQ---  105 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~---  105 (291)
                      +.++++|....   ..+|||||||+|..+..|++.|..|+|||+|+.||+.|+++...         ..+...++..   
T Consensus        46 ~~l~~~l~~~~---~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          46 AWLLGLLRQHG---CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHTT---CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhhhcC---CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            34455554444   56999999999999999999999999999999999999876421         2344444311   


Q ss_pred             CCCCCCCcccEEEEC-CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          106 GLGLRPGVVDGAISI-SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~-~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                      .++ ..++||+|+|. .+++|+++...    ....+..+|++++++|||||+|++.+.
T Consensus       123 ~~~-~~~~fd~v~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         123 DVP-AGDGFDAVICLGNSFAHLPDSKG----DQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HSC-CTTCEEEEEECSSCGGGSCCTTS----SSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccC-CCCCceEEEEecCchhhcCCccc----ChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            112 25689999986 48999876321    223367899999999999999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.7e-17  Score=141.01  Aligned_cols=125  Identities=16%  Similarity=0.070  Sum_probs=94.3

Q ss_pred             CCeEEEEcCCCchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCc-----------------------------------
Q 043626           52 PRLLLDIGCGSGLSGETLS-ENGHQWIGLDISQSMLNIALEREVE-----------------------------------   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~-----------------------------------   95 (291)
                      +.+|||||||+|.....++ +.+.+|+|+|+|+.|++.++++...                                   
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV  134 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred             CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhh
Confidence            6799999999998775544 4467899999999999999865321                                   


Q ss_pred             ceEEEccCCCC-----CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--------
Q 043626           96 GDLLLGDMGQG-----LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--------  162 (291)
Q Consensus        96 ~~~~~~D~~~~-----~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--------  162 (291)
                      ..++..|+...     .++.+++||+|++.++++|++..       ...+..++++++++|||||.+++...        
T Consensus       135 ~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~-------~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~  207 (263)
T d2g72a1         135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD-------LASFQRALDHITTLLRPGGHLLLIGALEESWYLA  207 (263)
T ss_dssp             EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS-------HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE
T ss_pred             hccccccccCCCccccCCcCcCccCeeeeHHHHHHHccC-------HHHHHHHHHHHHHHcCCCCEEEEecccCCccccc
Confidence            12445566442     23456789999999999999631       12378999999999999999998432        


Q ss_pred             -----CCChHHHHHHHHHHHHcCCCC
Q 043626          163 -----PESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       163 -----~~~~~~~~~i~~~~~~aGF~~  183 (291)
                           +......+.+.+++..+||+.
T Consensus       208 ~~~~~~~~~~t~e~v~~~l~~aGf~v  233 (263)
T d2g72a1         208 GEARLTVVPVSEEEVREALVRSGYKV  233 (263)
T ss_dssp             TTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             CCcccccCCCCHHHHHHHHHHCCCeE
Confidence                 111235678999999999975

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-16  Score=136.62  Aligned_cols=102  Identities=12%  Similarity=-0.015  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--------CCeEEEEeCCHHHHHHHHhcCCc------c--eEEEccCCC-----CCCCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--------GHQWIGLDISQSMLNIALEREVE------G--DLLLGDMGQ-----GLGLR  110 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--------g~~v~gvDis~~ml~~a~~~~~~------~--~~~~~D~~~-----~~~~~  110 (291)
                      ..+|||||||+|.++..|+..        +..++|||+|+.|++.|+++...      +  ++...++..     ..++.
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            458999999999998877653        24689999999999999886432      2  233333211     13566


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      +++||+|+|..+++|+.+           +..+++.++++|+|||.+++.....
T Consensus       121 ~~~fD~I~~~~~l~~~~d-----------~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKD-----------IPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             CCCEEEEEEESCGGGCSC-----------HHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             CCceeEEEEccceecCCC-----------HHHHHHHHHhhCCCCCEEEEEEecC
Confidence            889999999999999987           6789999999999999999876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.2e-16  Score=133.19  Aligned_cols=136  Identities=14%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCC-C
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE----GDLLLGDMGQ-G  106 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~-~  106 (291)
                      ...+.+.+.+.+.. .   +.+|||||||+|.++..+++.+ .+++|||+|+.|++.|+++...    +.++..|+.. .
T Consensus        39 ~~~~~~~la~~~~~-~---g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  114 (229)
T d1zx0a1          39 ETPYMHALAAAASS-K---GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA  114 (229)
T ss_dssp             GHHHHHHHHHHHTT-T---CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred             HHHHHHHHHHhhcc-C---CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence            34445555566553 3   6799999999999999999875 7899999999999999987643    4556665422 2


Q ss_pred             CCCCCCcccEEEE-----CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE-----------cCC-ChHHH
Q 043626          107 LGLRPGVVDGAIS-----ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI-----------YPE-SVAQR  169 (291)
Q Consensus       107 ~~~~~~~fD~Vis-----~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~-----------~~~-~~~~~  169 (291)
                      .+++.++||.|+.     ..+++|+.+           ...++++++++|||||+|++..           +.. .....
T Consensus       115 ~~~~~~~fD~i~fD~~~~~~~~~~~~~-----------~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (229)
T d1zx0a1         115 PTLPDGHFDGILYDTYPLSEETWHTHQ-----------FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFE  183 (229)
T ss_dssp             GGSCTTCEEEEEECCCCCBGGGTTTHH-----------HHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHH
T ss_pred             cccccccccceeecccccccccccccC-----------HHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhh
Confidence            2566789999874     455555544           6789999999999999998731           111 01123


Q ss_pred             HHHHHHHHHcCCCC
Q 043626          170 ELILGAAMRAGFAG  183 (291)
Q Consensus       170 ~~i~~~~~~aGF~~  183 (291)
                      +.+...+.++||+.
T Consensus       184 ~~~~~~l~~agF~~  197 (229)
T d1zx0a1         184 ETQVPALLEAGFRR  197 (229)
T ss_dssp             HHTHHHHHHTTCCG
T ss_pred             hHHHHHHHHCCCee
Confidence            45566788999985

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2e-15  Score=128.40  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQ  105 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~  105 (291)
                      ..+..+++++|.+.+   +.+|||||||+|.++..|++. +  ..|+++|+++.+++.|+++..     ++.++++|..+
T Consensus        61 P~~~a~~l~~l~l~~---g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~  137 (213)
T d1dl5a1          61 PSLMALFMEWVGLDK---GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (213)
T ss_dssp             HHHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             chhhHHHHHhhhccc---cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH
Confidence            356677899999887   889999999999999999875 3  689999999999999998753     46778888744


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY  162 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~  162 (291)
                       ..+..++||+|++..+++++++                 .+.+.|+|||++++.+.
T Consensus       138 -~~~~~~~fD~I~~~~~~~~~p~-----------------~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         138 -GVPEFSPYDVIFVTVGVDEVPE-----------------TWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             -CCGGGCCEEEEEECSBBSCCCH-----------------HHHHHEEEEEEEEEEBC
T ss_pred             -ccccccchhhhhhhccHHHhHH-----------------HHHHhcCCCcEEEEEEC
Confidence             3445678999999999988743                 35778999999998664

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.57  E-value=1.4e-14  Score=122.71  Aligned_cols=165  Identities=17%  Similarity=0.108  Sum_probs=103.2

Q ss_pred             cCCchhhccccccchhHHHHHHHHHHHHH--HhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHH
Q 043626           14 FYDDTEARKYTSSSRIIDIQAKLSERALE--LLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIA   89 (291)
Q Consensus        14 fy~~~~a~~Y~~~~~~~~iq~~~~~~~le--lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a   89 (291)
                      .|.+.....|..   +...+.+++..++.  .|.+++   +.+|||||||+|..+..|++..  ..|+|+|+|+.|++.|
T Consensus        23 ~~~e~~~~~~r~---w~p~rsklaa~i~~g~~l~lkp---g~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a   96 (209)
T d1nt2a_          23 HYGEKVFDGYRE---WVPWRSKLAAMILKGHRLKLRG---DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKL   96 (209)
T ss_dssp             SSSCCEETTEEE---CCGGGCHHHHHHHTSCCCCCCS---SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHH
T ss_pred             cCCceeccceee---eCCcchHHHHHHhccccCCCCC---CCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHH
Confidence            355555444432   22223344444443  244555   7899999999999999999863  6899999999999998


Q ss_pred             HhcC---CcceEEEccCCCCCCCCCC---cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626           90 LERE---VEGDLLLGDMGQGLGLRPG---VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus        90 ~~~~---~~~~~~~~D~~~~~~~~~~---~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      +++.   .++.+++.|+.. .+....   .+|+|++.  +.|..+           ...++.+++++|||||.+++.+..
T Consensus        97 ~~~a~~~~ni~~i~~d~~~-~~~~~~~~~~vd~v~~~--~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_          97 LELVRERNNIIPLLFDASK-PWKYSGIVEKVDLIYQD--IAQKNQ-----------IEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             HHHHHHCSSEEEECSCTTC-GGGTTTTCCCEEEEEEC--CCSTTH-----------HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHhhccCCceEEEeeccC-ccccccccceEEEEEec--ccChhh-----------HHHHHHHHHHHhccCCeEEEEEEc
Confidence            7754   457888888744 322233   44444432  333222           568899999999999999987532


Q ss_pred             ------CChH-HHHHHHHHHHHcCCCCcEEEeC-CCCCCCCcEEEEE
Q 043626          164 ------ESVA-QRELILGAAMRAGFAGGVVVDY-PHSSKSRKEFLVL  202 (291)
Q Consensus       164 ------~~~~-~~~~i~~~~~~aGF~~~~~~~~-p~~~~~~~~~l~l  202 (291)
                            ..+. ........ .++||.....++. |+.   +.++++.
T Consensus       163 ~~~d~~~~~~~~~~~~~~~-l~~gf~i~E~i~L~P~~---~~H~~v~  205 (209)
T d1nt2a_         163 RSIDSTAEPEEVFKSVLKE-MEGDFKIVKHGSLMPYH---RDHIFIH  205 (209)
T ss_dssp             HHHCTTSCHHHHHHHHHHH-HHTTSEEEEEEECTTTC---TTEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHH-HHcCCEEEEEEccCCCc---cCcEEEE
Confidence                  1222 22233332 3579986555554 333   4555543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.1e-14  Score=128.01  Aligned_cols=144  Identities=22%  Similarity=0.246  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      .+++.++..+...    +.+|||+|||||..+..++...  ..++++|+|+.+++.|++|.     .++.++.+|+.+. 
T Consensus        96 ~lv~~~l~~~~~~----~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~-  170 (274)
T d2b3ta1          96 CLVEQALARLPEQ----PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-  170 (274)
T ss_dssp             HHHHHHHHHSCSS----CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-
T ss_pred             hhhhhHhhhhccc----ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc-
Confidence            4556666654322    6789999999999999998764  79999999999999999875     2478999998553 


Q ss_pred             CCCCCcccEEEECCchhhhcccc------ccCCchH----------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626          108 GLRPGVVDGAISISAVQWLCNAD------KASHEPR----------LRLKAFFGSLYRCLARGARAVFQIYPESVAQREL  171 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~------~~~~~p~----------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  171 (291)
                       +..++||+||||..  +++..+      ...++|.          .-+..++..+.++|+|||.+++.+.+.   |...
T Consensus       171 -~~~~~fDlIvsNPP--Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~---q~~~  244 (274)
T d2b3ta1         171 -LAGQQFAMIVSNPP--YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---QGEA  244 (274)
T ss_dssp             -GTTCCEEEEEECCC--CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---CHHH
T ss_pred             -cCCCceeEEEecch--hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch---HHHH
Confidence             44679999999943  333221      1123443          345789999999999999999998543   5567


Q ss_pred             HHHHHHHcCCCC-cEEEeC
Q 043626          172 ILGAAMRAGFAG-GVVVDY  189 (291)
Q Consensus       172 i~~~~~~aGF~~-~~~~~~  189 (291)
                      +.+.+.+.||.. .+.-|+
T Consensus       245 v~~~l~~~gf~~i~~~kDl  263 (274)
T d2b3ta1         245 VRQAFILAGYHDVETCRDY  263 (274)
T ss_dssp             HHHHHHHTTCTTCCEEECT
T ss_pred             HHHHHHHCCCCeEEEEECC
Confidence            788889999975 445555

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.1e-14  Score=127.25  Aligned_cols=128  Identities=20%  Similarity=0.180  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC--------CcceEEEcc
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE--------VEGDLLLGD  102 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~--------~~~~~~~~D  102 (291)
                      ..-+..++.++.+.+   +++|||+|||+|.++..|+.. |  .+++++|+++.+++.|+++.        .++.+.++|
T Consensus        82 pkD~s~Ii~~l~i~P---G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          82 PKDAAQIVHEGDIFP---GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             HHHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             hHHHHHHHHHhCCCC---CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            344667888999988   899999999999999999986 3  79999999999999998754        246888899


Q ss_pred             CCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHH-HcCC
Q 043626          103 MGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAM-RAGF  181 (291)
Q Consensus       103 ~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~-~aGF  181 (291)
                      +. ..++++++||.|++.     +++           ...++..++++|||||++++..  .+.+|...+.+.+. ..||
T Consensus       159 ~~-~~~~~~~~fDaV~ld-----lp~-----------P~~~l~~~~~~LkpGG~lv~~~--P~i~Qv~~~~~~l~~~~~f  219 (264)
T d1i9ga_         159 LA-DSELPDGSVDRAVLD-----MLA-----------PWEVLDAVSRLLVAGGVLMVYV--ATVTQLSRIVEALRAKQCW  219 (264)
T ss_dssp             GG-GCCCCTTCEEEEEEE-----SSC-----------GGGGHHHHHHHEEEEEEEEEEE--SSHHHHHHHHHHHHHHSSB
T ss_pred             cc-cccccCCCcceEEEe-----cCC-----------HHHHHHHHHhccCCCCEEEEEe--CccChHHHHHHHHHHcCCe
Confidence            84 457788999999863     444           2367889999999999988654  35578888888886 5678


Q ss_pred             CC
Q 043626          182 AG  183 (291)
Q Consensus       182 ~~  183 (291)
                      ..
T Consensus       220 ~~  221 (264)
T d1i9ga_         220 TE  221 (264)
T ss_dssp             CC
T ss_pred             ec
Confidence            76

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.56  E-value=1.7e-14  Score=125.83  Aligned_cols=148  Identities=16%  Similarity=0.085  Sum_probs=106.5

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG  108 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~  108 (291)
                      ...+++.+.+..   ..+|||||||+|.++..|++..  .+++++|+ +.+++.++++..      .+.++.+|+...+ 
T Consensus        70 ~~~~~~~~d~~~---~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-  144 (256)
T d1qzza2          70 YEAPADAYDWSA---VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-  144 (256)
T ss_dssp             THHHHHTSCCTT---CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-
T ss_pred             HHHHHhcCCCcc---CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc-
Confidence            345666666665   5699999999999999999884  79999998 788888876542      3678888874432 


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCCh--------------------
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PESV--------------------  166 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~~--------------------  166 (291)
                        +..||+|++.++||++.+         .....+|++++++|+|||++++...  +...                    
T Consensus       145 --p~~~D~v~~~~vLh~~~d---------~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g  213 (256)
T d1qzza2         145 --PVTADVVLLSFVLLNWSD---------EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGG  213 (256)
T ss_dssp             --SCCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSC
T ss_pred             --cccchhhhccccccccCc---------HHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCC
Confidence              356999999999998854         2356889999999999999998532  1110                    


Q ss_pred             --HHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEE
Q 043626          167 --AQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFL  200 (291)
Q Consensus       167 --~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l  200 (291)
                        ...+++.+++.++||....+...+.+.......+
T Consensus       214 ~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v  249 (256)
T d1qzza2         214 RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSI  249 (256)
T ss_dssp             CCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEE
T ss_pred             ccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEE
Confidence              0135678889999998744444444433334433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.55  E-value=6.9e-15  Score=127.80  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=96.4

Q ss_pred             HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC
Q 043626           37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL  107 (291)
Q Consensus        37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~  107 (291)
                      +..++..+.+.+   +.+|||+|||+|.++..|+..   ..+|+++|+++.+++.|+++..      ++.+..+|+.+. 
T Consensus        74 ~~~Ii~~l~i~p---G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-  149 (250)
T d1yb2a1          74 ASYIIMRCGLRP---GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-  149 (250)
T ss_dssp             -------CCCCT---TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred             HHHHHHHcCCCC---cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence            445677788887   889999999999999999975   3699999999999999998753      368899998654 


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                       +.+++||.|++..     ++           ...++..++++|||||++++.. | +.+|...+.+.+.+.||..
T Consensus       150 -~~~~~fD~V~ld~-----p~-----------p~~~l~~~~~~LKpGG~lv~~~-P-~i~Qv~~~~~~l~~~gf~~  206 (250)
T d1yb2a1         150 -ISDQMYDAVIADI-----PD-----------PWNHVQKIASMMKPGSVATFYL-P-NFDQSEKTVLSLSASGMHH  206 (250)
T ss_dssp             -CCSCCEEEEEECC-----SC-----------GGGSHHHHHHTEEEEEEEEEEE-S-SHHHHHHHHHHSGGGTEEE
T ss_pred             -cccceeeeeeecC-----Cc-----------hHHHHHHHHHhcCCCceEEEEe-C-CcChHHHHHHHHHHCCCce
Confidence             3478999999752     22           2257889999999999998754 3 4578899999999999975

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.55  E-value=8.5e-15  Score=125.24  Aligned_cols=108  Identities=23%  Similarity=0.256  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~  111 (291)
                      .+...+++.|.+.+   +.+|||||||+|.++..|++.+.+|+++|+++.+++.|+++.   .++.++.+|...+.+ ..
T Consensus        57 ~~~a~ml~~L~l~~---g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-~~  132 (224)
T d1vbfa_          57 NLGIFMLDELDLHK---GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EE  132 (224)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GG
T ss_pred             hhHHHHHHHhhhcc---cceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcch-hh
Confidence            45567889999887   789999999999999999999999999999999999998864   347889999755444 35


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                      ++||.|++..+++++++                 .+.+.|+|||++++-+..
T Consensus       133 ~pfD~Iiv~~a~~~ip~-----------------~l~~qLk~GGrLV~pvg~  167 (224)
T d1vbfa_         133 KPYDRVVVWATAPTLLC-----------------KPYEQLKEGGIMILPIGV  167 (224)
T ss_dssp             CCEEEEEESSBBSSCCH-----------------HHHHTEEEEEEEEEEECS
T ss_pred             hhHHHHHhhcchhhhhH-----------------HHHHhcCCCCEEEEEEcC
Confidence            78999999988887743                 356789999999997643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.2e-15  Score=125.81  Aligned_cols=109  Identities=23%  Similarity=0.282  Sum_probs=87.7

Q ss_pred             HHHHHHHHHh--CCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC----------cceEE
Q 043626           35 KLSERALELL--ALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV----------EGDLL   99 (291)
Q Consensus        35 ~~~~~~lelL--~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~----------~~~~~   99 (291)
                      .+..+++++|  .+.+   +.+|||||||+|..+..|++.   ...|+++|+++.+++.|+++..          .+.+.
T Consensus        61 ~~~a~~le~L~~~l~~---g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~  137 (224)
T d1i1na_          61 HMHAYALELLFDQLHE---GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  137 (224)
T ss_dssp             HHHHHHHHHTTTTSCT---TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             HHHHHHHHHHhhccCC---CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence            4566788888  4454   789999999999999999886   3699999999999999987642          35778


Q ss_pred             EccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       100 ~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      .+|... ..+..++||.|++..+++++++                 .+.+.|||||++++.+.+.
T Consensus       138 ~gD~~~-~~~~~~~fD~I~~~~~~~~ip~-----------------~l~~~LkpGG~LV~pv~~~  184 (224)
T d1i1na_         138 VGDGRM-GYAEEAPYDAIHVGAAAPVVPQ-----------------ALIDQLKPGGRLILPVGPA  184 (224)
T ss_dssp             ESCGGG-CCGGGCCEEEEEECSBBSSCCH-----------------HHHHTEEEEEEEEEEESCT
T ss_pred             Eeeccc-ccchhhhhhhhhhhcchhhcCH-----------------HHHhhcCCCcEEEEEEccC
Confidence            888744 3455789999999999888743                 4678999999999977543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.52  E-value=2.7e-14  Score=120.42  Aligned_cols=122  Identities=19%  Similarity=0.296  Sum_probs=93.6

Q ss_pred             CeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC-CCCCCcccEEEECCchh
Q 043626           53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL-GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~  124 (291)
                      -.|||||||+|.++..|++..  ..++|||+++.++..|.++.     .++.++.+|+.... -++++++|.|++++...
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            389999999999999999885  89999999999999887643     45889999974322 26789999999998888


Q ss_pred             hhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          125 WLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      |....    | ...++  ..+|..++++|||||.|++.+  +.....+.+...+...++
T Consensus       111 ~~k~~----h-~k~Rl~~~~~l~~~~r~LkpgG~l~i~T--D~~~y~~~~~~~~~~~~~  162 (204)
T d2fcaa1         111 WPKKR----H-EKRRLTYSHFLKKYEEVMGKGGSIHFKT--DNRGLFEYSLKSFSEYGL  162 (204)
T ss_dssp             CCSGG----G-GGGSTTSHHHHHHHHHHHTTSCEEEEEE--SCHHHHHHHHHHHHHHTC
T ss_pred             cchhh----h-cchhhhHHHHHHHHHHhCCCCcEEEEEE--CChHHHHHHHHHHHHCCC
Confidence            86431    1 11111  479999999999999999986  344455566666666655

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=1.4e-13  Score=117.84  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=103.8

Q ss_pred             HHHHHHHHHH---hCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC---cceEEEccCC
Q 043626           34 AKLSERALEL---LALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV---EGDLLLGDMG  104 (291)
Q Consensus        34 ~~~~~~~lel---L~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~  104 (291)
                      +.+...++.-   |.+.+   +++|||+|||+|..+..|++. |  ..|+|+|+|+.|++.++++..   .+..+..|..
T Consensus        56 SKlaa~i~~~l~~l~i~p---G~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~  132 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKP---GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDAT  132 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCT---TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTT
T ss_pred             cHHHHHHHccccccccCC---CCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECC
Confidence            3555555443   34554   889999999999999999986 3  799999999999999987653   3567777764


Q ss_pred             CC--CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC------ChHHHHHHHHHH
Q 043626          105 QG--LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE------SVAQRELILGAA  176 (291)
Q Consensus       105 ~~--~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~------~~~~~~~i~~~~  176 (291)
                      ..  .+.....+|+|++.  +.+..+           ...++.+++++|||||.+++.++..      .+.....-...+
T Consensus       133 ~~~~~~~~~~~vD~i~~d--~~~~~~-----------~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l  199 (227)
T d1g8aa_         133 KPEEYRALVPKVDVIFED--VAQPTQ-----------AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERE  199 (227)
T ss_dssp             CGGGGTTTCCCEEEEEEC--CCSTTH-----------HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHH
T ss_pred             CcccccccccceEEEEEE--ccccch-----------HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHH
Confidence            42  23445788988865  222222           5678999999999999999876432      223333334445


Q ss_pred             HHcCCCCcEEEeC-CCCCCCCcEEEEEe
Q 043626          177 MRAGFAGGVVVDY-PHSSKSRKEFLVLT  203 (291)
Q Consensus       177 ~~aGF~~~~~~~~-p~~~~~~~~~l~l~  203 (291)
                      .+.||.....++. |+.   ..+++++.
T Consensus       200 ~~~gf~iie~i~L~p~~---~~H~~vv~  224 (227)
T d1g8aa_         200 LSEYFEVIERLNLEPYE---KDHALFVV  224 (227)
T ss_dssp             HHTTSEEEEEEECTTTS---SSEEEEEE
T ss_pred             HHcCCEEEEEEcCCCCC---CceEEEEE
Confidence            6789986555554 433   34565553

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=7.7e-14  Score=122.22  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQ  105 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~  105 (291)
                      .-+..++.+|++.+   +.+|||+|||+|.++..|++.   +.+++++|+++.+++.|+++...      +.+...|+..
T Consensus        90 kd~~~Ii~~l~i~p---G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          90 KDSSFIAMMLDVKE---GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  166 (266)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             HHHHHHHHhhCCCC---CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence            45567888999988   899999999999999999976   37999999999999999987532      4566666533


Q ss_pred             CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                        .+....||.|+.     ++++           ...++.++.++|||||++++.. | ..+|+..+.+.+.+.||..
T Consensus       167 --~~~~~~~D~V~~-----d~p~-----------p~~~l~~~~~~LKpGG~lv~~~-P-~~~Qv~~~~~~l~~~gF~~  224 (266)
T d1o54a_         167 --GFDEKDVDALFL-----DVPD-----------PWNYIDKCWEALKGGGRFATVC-P-TTNQVQETLKKLQELPFIR  224 (266)
T ss_dssp             --CCSCCSEEEEEE-----CCSC-----------GGGTHHHHHHHEEEEEEEEEEE-S-SHHHHHHHHHHHHHSSEEE
T ss_pred             --cccccceeeeEe-----cCCC-----------HHHHHHHHHhhcCCCCEEEEEe-C-cccHHHHHHHHHHHCCcee
Confidence              355678999875     3444           3468999999999999999765 2 4578899999999999975

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.47  E-value=3.5e-13  Score=113.51  Aligned_cols=125  Identities=22%  Similarity=0.294  Sum_probs=92.1

Q ss_pred             CeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC-CCCCCcccEEEECCchh
Q 043626           53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL-GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~  124 (291)
                      ..|||||||+|.++..++...  ..++|||+++.++..|.++.     .++.++.+|+.... -++++++|.|++++...
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP  112 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP  112 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence            389999999999999999874  88999999999999886543     46899999985422 26789999999988877


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA  182 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~  182 (291)
                      |....   .+.-+.-...+|..++++|+|||.+++.+-  +..-.+.+...+...++.
T Consensus       113 w~K~~---h~krRl~~~~~l~~~~~~LkpgG~l~i~TD--~~~Y~~~~le~~~~~~~~  165 (204)
T d1yzha1         113 WPKKR---HEKRRLTYKTFLDTFKRILPENGEIHFKTD--NRGLFEYSLVSFSQYGMK  165 (204)
T ss_dssp             CCSGG---GGGGSTTSHHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHHTCE
T ss_pred             ccchh---hhhhhhhHHHHHHHHHHhCCCCcEEEEEEC--CccHHHHHHHHHHHCCcc
Confidence            75321   111111125899999999999999999872  333344555555555553

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7e-14  Score=126.08  Aligned_cols=112  Identities=15%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC--------------Ccc
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE--------------VEG   96 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~--------------~~~   96 (291)
                      +..+...+++.+.+.+   +..|||||||+|..+..++.. + ..++|||+|+.|++.|+++.              .++
T Consensus       136 ~~~~~~~~~~~~~l~~---~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         136 SFDLVAQMIDEIKMTD---DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             CHHHHHHHHHHSCCCT---TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHHHHHHHHcCCCC---CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            3466778889998887   789999999999999988865 4 57999999999999997642              347


Q ss_pred             eEEEccCCCCCCCCCCcc--cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           97 DLLLGDMGQGLGLRPGVV--DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        97 ~~~~~D~~~~~~~~~~~f--D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .++++|+. ..++....|  |+|+++. +.|.++           +...+.++++.|||||++|+.
T Consensus       213 ~~~~gd~~-~~~~~~~~~~advi~~~~-~~f~~~-----------~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         213 TLERGDFL-SEEWRERIANTSVIFVNN-FAFGPE-----------VDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             EEEECCTT-SHHHHHHHHHCSEEEECC-TTTCHH-----------HHHHHHHHHTTCCTTCEEEES
T ss_pred             EEEECccc-ccccccccCcceEEEEcc-eecchH-----------HHHHHHHHHHhCCCCcEEEEe
Confidence            89999984 456555444  5666654 434433           678899999999999999873

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-13  Score=121.48  Aligned_cols=128  Identities=17%  Similarity=0.230  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC----------------c
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV----------------E   95 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~----------------~   95 (291)
                      .-+..++.+|++.+   +.+|||+|||+|.++..|+.. |  ..|+++|+++.+++.|+++..                +
T Consensus        85 kD~~~Il~~l~i~p---G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          85 KDINMILSMMDINP---GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             HHHHHHHHHHTCCT---TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             ccHHHHHHHhCCCC---CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            33567788899988   889999999999999999986 3  799999999999999988642                3


Q ss_pred             ceEEEccCCCCC-CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626           96 GDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILG  174 (291)
Q Consensus        96 ~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~  174 (291)
                      +++.+.|+.... .+...+||.|+...     ++       |    ..++..++++|||||++++-. | +-.|+..+.+
T Consensus       162 v~~~~~di~~~~~~~~~~~fD~V~LD~-----p~-------P----~~~l~~~~~~LKpGG~lv~~~-P-~i~Qv~~~~~  223 (324)
T d2b25a1         162 VDFIHKDISGATEDIKSLTFDAVALDM-----LN-------P----HVTLPVFYPHLKHGGVCAVYV-V-NITQVIELLD  223 (324)
T ss_dssp             EEEEESCTTCCC-------EEEEEECS-----SS-------T----TTTHHHHGGGEEEEEEEEEEE-S-SHHHHHHHHH
T ss_pred             eeEEecchhhcccccCCCCcceEeecC-----cC-------H----HHHHHHHHHhccCCCEEEEEe-C-CHHHHHHHHH
Confidence            688899985432 34567899998642     22       1    246889999999999988743 3 4578888888


Q ss_pred             HHHHc--CCCC
Q 043626          175 AAMRA--GFAG  183 (291)
Q Consensus       175 ~~~~a--GF~~  183 (291)
                      .+...  ||..
T Consensus       224 ~l~~~~~~f~~  234 (324)
T d2b25a1         224 GIRTCELALSC  234 (324)
T ss_dssp             HHHHHTCCEEE
T ss_pred             HHHHcCCCcee
Confidence            88765  4654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=3.1e-13  Score=121.63  Aligned_cols=97  Identities=25%  Similarity=0.353  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||||||+|.++..+++.| ..|+|+|.|+ ++..|++..      ..+.++.+|+ ..+++++++||+|++..+.+
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~-~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL-EDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSSSCEEEEEECCCBT
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh-hhccCcccceeEEEEEecce
Confidence            6799999999999999999998 6999999997 556665432      2378899998 55778889999999987777


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                      ++.+...        +..++....++|||||.++
T Consensus       117 ~~~~e~~--------~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         117 FLLYESM--------MDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBSTTCC--------HHHHHHHHHHHEEEEEEEE
T ss_pred             eeccchh--------HHHHHHHHHhccCCCeEEE
Confidence            6654211        5678888999999999886

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.5e-13  Score=118.98  Aligned_cols=99  Identities=23%  Similarity=0.291  Sum_probs=78.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhc-----CCcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER-----EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~-----~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +..|||||||+|.++..+++.| .+|+|+|+|+.|+..++..     ...+.++.+|+ ..++++..+||+|+|....++
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI-EEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSCSCEEEEEECCCBTT
T ss_pred             cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH-HHhcCccccceEEEEeeeeee
Confidence            6799999999999999999998 6899999999887543322     12378899998 557777899999999877776


Q ss_pred             hccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +.+.        ..+..++....++|+|||+++.
T Consensus       115 ~~~e--------~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         115 LLFE--------SMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTT--------CHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccc--------cccHHHHHHHHhcCCCCcEEec
Confidence            6432        1256778888899999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.39  E-value=4.4e-13  Score=113.74  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL  107 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~  107 (291)
                      ..+..+++++|.+.+   +.+|||||||+|..+..|+.. |..|+++|+++.+++.|+++.     .++.++++|...+.
T Consensus        64 P~~~a~ml~~L~l~~---g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~  140 (215)
T d1jg1a_          64 PHMVAIMLEIANLKP---GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHHHTCCT---TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhhHHHHHHhhccCc---cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC
Confidence            356678899999988   789999999999999999987 678999999999999999865     45789999986654


Q ss_pred             CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      + ..++||.|++..++.++++                 .+...|++||++++-+...
T Consensus       141 ~-~~~pfD~Iiv~~a~~~ip~-----------------~l~~qL~~gGrLv~pv~~~  179 (215)
T d1jg1a_         141 P-PKAPYDVIIVTAGAPKIPE-----------------PLIEQLKIGGKLIIPVGSY  179 (215)
T ss_dssp             G-GGCCEEEEEECSBBSSCCH-----------------HHHHTEEEEEEEEEEECSS
T ss_pred             c-ccCcceeEEeecccccCCH-----------------HHHHhcCCCCEEEEEEccC
Confidence            4 4689999999998887743                 3567799999999977544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=5.3e-13  Score=119.50  Aligned_cols=98  Identities=20%  Similarity=0.206  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhc----C--CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER----E--VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~----~--~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||||||+|.++..+++.| .+|+|+|+|+.+. .+.+.    .  ..+.++.+|+ ..++++.++||+|++....+
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~~~-~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKGKV-EEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEESCT-TTCCCSSSCEEEEEECCCBB
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhhHHHHhCCccccceEeccH-HHcccccceeEEEeeeeeee
Confidence            6799999999999999999998 6899999998654 33332    1  2378999998 55778889999999987777


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ++.+...        +..++..+.++|+|||.++-
T Consensus       112 ~l~~e~~--------~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         112 CLFYESM--------LNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             TBTBTCC--------HHHHHHHHHHHEEEEEEEES
T ss_pred             eeccHHH--------HHHHHHHHHhcCCCCeEEEe
Confidence            7654211        67899999999999999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=1.4e-12  Score=111.15  Aligned_cols=109  Identities=21%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             HHHHHHHHHh--CCCCCCCCCeEEEEcCCCchhHHHHHHc----C----CeEEEEeCCHHHHHHHHhcC----------C
Q 043626           35 KLSERALELL--ALPDDGVPRLLLDIGCGSGLSGETLSEN----G----HQWIGLDISQSMLNIALERE----------V   94 (291)
Q Consensus        35 ~~~~~~lelL--~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g----~~v~gvDis~~ml~~a~~~~----------~   94 (291)
                      .+..+++++|  .+.+   +.+|||||||+|..+..|+..    |    .+|+++|+++.+++.|+++.          .
T Consensus        65 ~~~a~~l~~L~~~l~~---g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~  141 (223)
T d1r18a_          65 HMHAFALEYLRDHLKP---GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  141 (223)
T ss_dssp             HHHHHHHHHTTTTCCT---TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhhccCC---CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence            4566778887  5655   789999999999999988865    2    48999999999999998763          2


Q ss_pred             cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626           95 EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus        95 ~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      ++.++.+|.....+ ..++||.|++..++.++++                 .+...|++||++++-+...
T Consensus       142 nv~~~~~d~~~~~~-~~~~fD~Iiv~~a~~~~p~-----------------~l~~~Lk~gG~lV~pvg~~  193 (223)
T d1r18a_         142 QLLIVEGDGRKGYP-PNAPYNAIHVGAAAPDTPT-----------------ELINQLASGGRLIVPVGPD  193 (223)
T ss_dssp             SEEEEESCGGGCCG-GGCSEEEEEECSCBSSCCH-----------------HHHHTEEEEEEEEEEESCS
T ss_pred             EEEEEecccccccc-cccceeeEEEEeechhchH-----------------HHHHhcCCCcEEEEEEecC
Confidence            46888999755443 4679999999998877643                 3678999999999977543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=6.3e-13  Score=116.44  Aligned_cols=139  Identities=20%  Similarity=0.190  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~  107 (291)
                      .+++.+++.+....   ...|||+|||+|..+..++... ..|+++|+|+.+++.|++|...      +.+..+|+...+
T Consensus        97 ~lv~~~~~~~~~~~---~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~  173 (271)
T d1nv8a_          97 ELVELALELIRKYG---IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF  173 (271)
T ss_dssp             HHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG
T ss_pred             hhhhhhhhhhcccc---ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc
Confidence            45566666554333   5689999999999998888664 7999999999999999987532      456777875555


Q ss_pred             CCCCCcccEEEECCchhhhcccc----ccCCchHHHH-------HHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626          108 GLRPGVVDGAISISAVQWLCNAD----KASHEPRLRL-------KAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA  176 (291)
Q Consensus       108 ~~~~~~fD~Vis~~~l~~l~~~~----~~~~~p~~~l-------~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~  176 (291)
                      +...+.||+||||  ..|++...    ...++|..++       .-+-.-+.++|+|||.+++.+.+.   |.+.+.+.+
T Consensus       174 ~~~~~~fDlIVsN--PPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~---Q~~~v~~l~  248 (271)
T d1nv8a_         174 KEKFASIEMILSN--PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED---QVEELKKIV  248 (271)
T ss_dssp             GGGTTTCCEEEEC--CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT---CHHHHTTTS
T ss_pred             ccccCcccEEEEc--ccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH---HHHHHHHHH
Confidence            5455899999999  33343321    1236777653       112222457899999999999544   555666666


Q ss_pred             HHcCC
Q 043626          177 MRAGF  181 (291)
Q Consensus       177 ~~aGF  181 (291)
                      ...||
T Consensus       249 ~~~g~  253 (271)
T d1nv8a_         249 SDTVF  253 (271)
T ss_dssp             TTCEE
T ss_pred             HhCCE
Confidence            65555

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.27  E-value=6e-12  Score=105.09  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEE
Q 043626           21 RKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLL   99 (291)
Q Consensus        21 ~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~   99 (291)
                      .+|.+.+.+   ...+...+..+-++ .   +.+|||+|||+|.++..++..| ..|+|||+++.+++.|+++...++++
T Consensus        25 eQy~T~~~~---a~~~~~~~~~~~dl-~---Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~   97 (197)
T d1ne2a_          25 EQYPTDAST---AAYFLIEIYNDGNI-G---GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFM   97 (197)
T ss_dssp             --CCCCHHH---HHHHHHHHHHHTSS-B---TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred             ccCCCCHHH---HHHHHHHHHHcCCC-C---CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEE
Confidence            457666533   33444333333233 2   6799999999999999999888 68999999999999999999999999


Q ss_pred             EccCCCCCCCCCCcccEEEECCch
Q 043626          100 LGDMGQGLGLRPGVVDGAISISAV  123 (291)
Q Consensus       100 ~~D~~~~~~~~~~~fD~Vis~~~l  123 (291)
                      ++|+.+ +   ++.||+||+|..+
T Consensus        98 ~~D~~~-l---~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          98 VADVSE-I---SGKYDTWIMNPPF  117 (197)
T ss_dssp             ECCGGG-C---CCCEEEEEECCCC
T ss_pred             EEehhh-c---CCcceEEEeCccc
Confidence            999843 3   4789999999665

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=7.4e-12  Score=115.28  Aligned_cols=111  Identities=12%  Similarity=0.097  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCc--------------ceE
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREVE--------------GDL   98 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~--------------~~~   98 (291)
                      .+...+++.+.+.+   +..|||||||+|.++..++.. + ..++|||+|+.|++.|+++..+              ..+
T Consensus       203 ~~i~~Il~~l~Lkp---gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         203 NFLSDVYQQCQLKK---GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             HHHHHHHHHTTCCT---TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             HHHHHHHHHhCCCC---CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            45677889999887   789999999999999999876 4 5899999999999999876532              112


Q ss_pred             -EEccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           99 -LLGDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        99 -~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                       +.+++.....  ..-..+|+|+++. +.|.++           +...|.++++.|||||+++..
T Consensus       280 ~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~-----------l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         280 SLKKSFVDNNRVAELIPQCDVILVNN-FLFDED-----------LNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECC-TTCCHH-----------HHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeechhhccccccccccceEEEEec-ccCchH-----------HHHHHHHHHHhcCCCcEEEEe
Confidence             2233211100  0113467777654 334433           778999999999999999873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.21  E-value=4.6e-11  Score=102.96  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR  110 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~  110 (291)
                      .......+++.+..-..  ..+|||||||+|..+..++++.  .+++.+|+ +..++.+.. ...+.++.+|+.+.+|  
T Consensus        65 s~~~~~~l~~~~~~f~~--~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~-~~ri~~~~gd~~~~~p--  138 (244)
T d1fp1d2          65 CATEMKRMLEIYTGFEG--ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-LSGIEHVGGDMFASVP--  138 (244)
T ss_dssp             HHHHHHHHHHHCCTTTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-CTTEEEEECCTTTCCC--
T ss_pred             HHHHHHHHHHhcccccC--CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCC-CCCeEEecCCcccccc--
Confidence            33445566666653222  5799999999999999999884  78999998 555443221 2347899999865443  


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC----hH-----------------
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES----VA-----------------  167 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~----~~-----------------  167 (291)
                        ..|++++..+||++++         .....+|+++++.|+|||++++.-+  ++.    ..                 
T Consensus       139 --~~D~~~l~~vLh~~~d---------e~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g  207 (244)
T d1fp1d2         139 --QGDAMILKAVCHNWSD---------EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG  207 (244)
T ss_dssp             --CEEEEEEESSGGGSCH---------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSC
T ss_pred             --cceEEEEehhhhhCCH---------HHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCC
Confidence              4599999999998855         3367899999999999999998532  221    10                 


Q ss_pred             ---HHHHHHHHHHHcCCCCcEEEeCC
Q 043626          168 ---QRELILGAAMRAGFAGGVVVDYP  190 (291)
Q Consensus       168 ---~~~~i~~~~~~aGF~~~~~~~~p  190 (291)
                         ..+++..++.++||+...++..+
T Consensus       208 ~ert~~e~~~ll~~AGF~~v~v~~~~  233 (244)
T d1fp1d2         208 RERTEKQYEKLSKLSGFSKFQVACRA  233 (244)
T ss_dssp             CCEEHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHcCCCceEEEecC
Confidence               14567889999999974444443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.21  E-value=9.7e-12  Score=99.58  Aligned_cols=110  Identities=14%  Similarity=0.061  Sum_probs=82.1

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLR  110 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~  110 (291)
                      +.+...|...-.  +.+|||+|||+|.++..++.+| .+|+++|+++.+++.++++..      .+.++.+|+...+...
T Consensus         3 e~~fn~l~~~~~--g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~   80 (152)
T d2esra1           3 GAIFNMIGPYFN--GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL   80 (152)
T ss_dssp             HHHHHHHCSCCC--SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred             HHHHHHHHhhCC--CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc
Confidence            445566654332  7899999999999999888888 699999999999999888653      2688888875545555


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH--HhccCCcEEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY--RCLARGARAVFQI  161 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~--~~LkpgG~lv~~~  161 (291)
                      .++||+|++......            .....++..+.  ++|+|||.+++..
T Consensus        81 ~~~fDiIf~DPPy~~------------~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          81 TGRFDLVFLDPPYAK------------ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             CSCEEEEEECCSSHH------------HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccceeEechhhcc------------chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            789999998743221            11345566554  4699999999875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=1.1e-11  Score=111.01  Aligned_cols=129  Identities=15%  Similarity=-0.037  Sum_probs=91.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCC---CCCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQG---LGLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~---~~~~~~~fD~Vis~~~l  123 (291)
                      +.+|||++||+|.++..++..+.+|+++|+|+.+++.|+++.     .++.++.+|+.+.   ++...++||+||+...-
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~  225 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA  225 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence            679999999999999999876789999999999999999875     2468888887432   23345799999987432


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC--hH-HHHHHHHHHHHcCCC
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES--VA-QRELILGAAMRAGFA  182 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~--~~-~~~~i~~~~~~aGF~  182 (291)
                      ..  ........-...+..++..+.++|+|||.+++......  .. -.+.+...+..+|-.
T Consensus       226 ~~--~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~  285 (318)
T d1wxxa2         226 FA--KGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL  285 (318)
T ss_dssp             SC--CSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             cc--cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCC
Confidence            11  11111122233456789999999999999999776432  22 233455566667654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=1.5e-11  Score=110.29  Aligned_cols=127  Identities=17%  Similarity=0.110  Sum_probs=90.0

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCC---CCCCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQG---LGLRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~---~~~~~~~fD~Vis~~  121 (291)
                      +.+|||+|||+|.++..++..| .+|+++|+|+.+++.|+++..      .+.++++|+.+.   ++....+||+||+..
T Consensus       146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~Dp  225 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP  225 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCC
Confidence            6799999999999999999887 689999999999999988752      357888887432   223467999999863


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh--HH-HHHHHHHHHHcC
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV--AQ-RELILGAAMRAG  180 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~--~~-~~~i~~~~~~aG  180 (291)
                      ...  ....+....-.+.+..++..+.++|+|||.+++.......  +. .+.+.+.+.++|
T Consensus       226 P~~--~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         226 PAF--VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             CCS--CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             ccc--cCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            321  1111111222334677889999999999999998755432  22 344455566665

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.4e-10  Score=97.00  Aligned_cols=148  Identities=11%  Similarity=-0.007  Sum_probs=97.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCC-----CCCCCcccEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGL-----GLRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~-----~~~~~~fD~Vi  118 (291)
                      ..+|||||||+|..+..|+..  +..++|+|+|+.+++.|+++...      +.++..+....+     ....++||+||
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            468999999999999999876  58999999999999999987532      455555442221     22356899999


Q ss_pred             ECCchhhhccccc-------cCCchH-----------------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626          119 SISAVQWLCNADK-------ASHEPR-----------------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILG  174 (291)
Q Consensus       119 s~~~l~~l~~~~~-------~~~~p~-----------------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~  174 (291)
                      ||..+..-.+...       ..+.|.                 .-+.+++.+....+++.|.+.+.+.-  ..++..+..
T Consensus       142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~--~~~l~~i~~  219 (250)
T d2h00a1         142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK--KCSLAPLKE  219 (250)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS--TTSHHHHHH
T ss_pred             ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc--hhhHHHHHH
Confidence            9966543211110       011111                 12466677778889999998877742  346677888


Q ss_pred             HHHHcCCCCcEEEeCCCCCCCCcEEEEEe
Q 043626          175 AAMRAGFAGGVVVDYPHSSKSRKEFLVLT  203 (291)
Q Consensus       175 ~~~~aGF~~~~~~~~p~~~~~~~~~l~l~  203 (291)
                      .+.+.||....++.+-..  .+..|++-+
T Consensus       220 ~L~~~g~~~i~~ie~~qG--~~~r~iiaW  246 (250)
T d2h00a1         220 ELRIQGVPKVTYTEFCQG--RTMRWALAW  246 (250)
T ss_dssp             HHHHTTCSEEEEEEEEET--TEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEecCC--CEeEEEEEE
Confidence            899999986444444322  345555554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=1.2e-10  Score=101.17  Aligned_cols=115  Identities=16%  Similarity=0.131  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++..| .+|+++|+|+.+++.++++..      .+.++++|+.+..+  .+.||.|+++....
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~Ii~~~p~~  185 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVR  185 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSS
T ss_pred             ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--CCCCCEEEECCCCc
Confidence            6799999999999999999887 699999999999999987652      26889999855332  57899999763221


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-CC---ChHHHHHHHHHHHHcCCCC
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-PE---SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-~~---~~~~~~~i~~~~~~aGF~~  183 (291)
                                     -..++..+.++|++||.+.+... +.   .....+.+...+...||.-
T Consensus       186 ---------------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         186 ---------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             ---------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ---------------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence                           23567788899999999876432 21   1223566777788889875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=6.6e-10  Score=92.79  Aligned_cols=115  Identities=16%  Similarity=0.186  Sum_probs=77.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE----GDLLLGDMGQGLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+|||+|||+|.++..++..| ..|+|+|+|+.+++.|+++...    ..++.+|... +   ++.||+||++..+.+.
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~-~---~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-F---NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-C---CCCCSEEEECCCCSSS
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh-h---CCcCcEEEEcCccccc
Confidence            6799999999999999888888 6899999999999999987643    5788888733 2   5689999999765432


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..      ..   -..++...   +.+++.++... .........+...+...|+..
T Consensus       123 ~~------~~---d~~~l~~~---~~~~~~v~~ih-~~~~~~~~~i~~~~~~~g~~i  166 (201)
T d1wy7a1         123 RK------HA---DRPFLLKA---FEISDVVYSIH-LAKPEVRRFIEKFSWEHGFVV  166 (201)
T ss_dssp             ST------TT---THHHHHHH---HHHCSEEEEEE-ECCHHHHHHHHHHHHHTTEEE
T ss_pred             cc------cc---cHHHHHHH---Hhhcccchhcc-cchHHHHHHHHHHHhhcCceE
Confidence            11      01   11333333   33344443322 223334455666677777753

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.10  E-value=1.1e-10  Score=96.89  Aligned_cols=100  Identities=11%  Similarity=0.049  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCchhHH----HHHHc----C--CeEEEEeCCHHHHHHHHhcCCc--------------------------
Q 043626           52 PRLLLDIGCGSGLSGE----TLSEN----G--HQWIGLDISQSMLNIALEREVE--------------------------   95 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~----~L~~~----g--~~v~gvDis~~ml~~a~~~~~~--------------------------   95 (291)
                      +.+||++|||+|--..    .|.+.    +  ..++|+|||+.+|+.|+...-.                          
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            6799999999997433    33332    1  4799999999999999752100                          


Q ss_pred             ----------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           96 ----------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        96 ----------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                +.+...++....+...+.||+|+|.++|.++..         ....+++..++++|+|||.|++.
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~---------~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK---------TTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH---------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCH---------HHHHHHHHHHHHHhCCCcEEEEe
Confidence                      233444443333344688999999999999843         33578999999999999998874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=8.1e-11  Score=97.79  Aligned_cols=123  Identities=25%  Similarity=0.316  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCC--
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVE----GDLLLGDMGQG--  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~--  106 (291)
                      -|.+.+++.|...+   +..|||++||+|..+..+++.  +..++|+|.++.|++.|+++...    +.++.+++.+.  
T Consensus        10 Vll~evi~~l~~~~---~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~   86 (192)
T d1m6ya2          10 VMVREVIEFLKPED---EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF   86 (192)
T ss_dssp             TTHHHHHHHHCCCT---TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred             hHHHHHHHhhCCCC---CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHH
Confidence            46778899998776   789999999999999999886  48999999999999999987643    57788776331  


Q ss_pred             --CCCCCCcccEEEECCch--hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          107 --LGLRPGVVDGAISISAV--QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       107 --~~~~~~~fD~Vis~~~l--~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                        ..+..++||+|+....+  +.+.+++    ..-..+...+..++++|+|||++++..|..
T Consensus        87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~----r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          87 LLKTLGIEKVDGILMDLGVSTYQLKGEN----RELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHHHTTCSCEEEEEEECSCCHHHHHTSH----THHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHHHcCCCCcceeeeccchhHhhhhhhh----ccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence              12345799999875322  2233221    122336788999999999999999877653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.08  E-value=8.1e-11  Score=104.44  Aligned_cols=109  Identities=14%  Similarity=0.056  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCC---CCCCcccEEEECC
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLG---LRPGVVDGAISIS  121 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~---~~~~~fD~Vis~~  121 (291)
                      +.+|||++||+|.++..++..|.+|++||+|+.+++.|+++..       .+.++++|+...+.   .....||+||+..
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDP  212 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP  212 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred             CCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECC
Confidence            6799999999999999999999999999999999999998642       36889999754331   2357899999862


Q ss_pred             chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .- +-.........-...+..++..+..+|+|||.+++.+
T Consensus       213 P~-f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         213 PK-FGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             CS-EEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             Cc-ccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            21 1111111111223335667778889999999766544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.05  E-value=3.1e-10  Score=101.32  Aligned_cols=111  Identities=9%  Similarity=0.015  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCC---CCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLG---LRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~---~~~~~fD~Vis~  120 (291)
                      +.+|||++||+|.++..++..| ..|++||+|+.+++.|+++..       .++++.+|+...+.   -....||+||+.
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D  224 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID  224 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence            5699999999999999888887 589999999999999998752       36789999744332   235689999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE  164 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~  164 (291)
                      ..- + ....+..+.-.+.+..++..+.++|+|||.+++.....
T Consensus       225 PP~-f-~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         225 PPS-F-ARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             CCC-C------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             Chh-h-ccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            321 1 11122334455557889999999999999999988653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.02  E-value=4.7e-10  Score=96.34  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCc
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~  113 (291)
                      ....+++.+.....  ..+|||||||+|.++..|++..  .+++++|+.+ .++.+.. ...+.++.+|+.+.+|    .
T Consensus        68 ~~~~~~~~~~~~~~--~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~-~~r~~~~~~d~~~~~P----~  139 (243)
T d1kyza2          68 TMKKILETYTGFEG--LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPS-YPGVEHVGGDMFVSIP----K  139 (243)
T ss_dssp             HHHHHHHHCCTTSS--CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCC-CTTEEEEECCTTTCCC----C
T ss_pred             HHHHHHHhcccccC--CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhccc-CCceEEecccccccCC----C
Confidence            34455555444332  4689999999999999999884  7999999854 3333222 2347899999866554    2


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE--cCC---C----------------------h
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI--YPE---S----------------------V  166 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~--~~~---~----------------------~  166 (291)
                      .|.++..+++|.+++         .....+|+++++.|+|||++++..  .++   .                      .
T Consensus       140 ad~~~l~~vlh~~~d---------~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~e  210 (243)
T d1kyza2         140 ADAVFMKWICHDWSD---------EHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE  210 (243)
T ss_dssp             CSCEECSSSSTTSCH---------HHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             cceEEEEEEeecCCH---------HHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCc
Confidence            477787888887644         336789999999999999988842  111   0                      0


Q ss_pred             HHHHHHHHHHHHcCCCCcEE
Q 043626          167 AQRELILGAAMRAGFAGGVV  186 (291)
Q Consensus       167 ~~~~~i~~~~~~aGF~~~~~  186 (291)
                      ...+++..++.++||+...+
T Consensus       211 rt~~e~~~ll~~AGf~~vkv  230 (243)
T d1kyza2         211 RTQKEFEDLAKGAGFQGFKV  230 (243)
T ss_dssp             EEHHHHHHHHHHHCCSCEEE
T ss_pred             CCHHHHHHHHHHcCCCcEEE
Confidence            12456778999999998443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.9e-10  Score=93.75  Aligned_cols=99  Identities=13%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCCC---CCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE----GDLLLGDMGQGL---GLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~~---~~~~~~fD~Vis~~~l~  124 (291)
                      +.+|||+|||+|.++..++.+|.+++++|+|+.+++.++++...    ..+...+....+   .....+||+|++...+.
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~  121 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             CCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccccc
Confidence            67999999999999999999999999999999999999887542    344444432111   23456899999875433


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .  +       -...+..++.  ..+|+|||.+++..
T Consensus       122 ~--~-------~~~~l~~l~~--~~ll~~~g~ivie~  147 (171)
T d1ws6a1         122 M--D-------LAALFGELLA--SGLVEAGGLYVLQH  147 (171)
T ss_dssp             S--C-------TTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred             c--C-------HHHHHHHHHH--cCCcCCCeEEEEEe
Confidence            2  1       0011233332  35799999999875

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=3.2e-10  Score=93.28  Aligned_cols=99  Identities=12%  Similarity=-0.026  Sum_probs=76.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|||++||||.++..++.+| .+|++||+++.+++.++++..     +..++..|+...+.....+||+|++......
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~  123 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR  123 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc
Confidence            6799999999999999988898 689999999999999988653     3577888865544445678999998754321


Q ss_pred             hccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEc
Q 043626          126 LCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIY  162 (291)
Q Consensus       126 l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~  162 (291)
                      - .           ...++..+.+  +|+++|.+++...
T Consensus       124 ~-~-----------~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         124 G-L-----------LEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             T-T-----------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             c-h-----------HHHHHHHHHHCCCCCCCeEEEEEec
Confidence            0 1           3455666654  6999999999763

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=1.3e-09  Score=93.57  Aligned_cols=117  Identities=13%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      ..+|||||||+|..+..+++..  .+++.+|. +..++.+.. ...+.++.+|+.+..    ..+|++++.++||++.+ 
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~-~~rv~~~~gD~f~~~----p~aD~~~l~~vLHdw~d-  153 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-SNNLTYVGGDMFTSI----PNADAVLLKYILHNWTD-  153 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-BTTEEEEECCTTTCC----CCCSEEEEESCGGGSCH-
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcc-cCceEEEecCcccCC----CCCcEEEEEeecccCCh-
Confidence            4589999999999999999884  79999998 555554432 234899999986532    25799999999998855 


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCC---cEEEEEE--cCCCh-----------------------HHHHHHHHHHHHcCC
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARG---ARAVFQI--YPESV-----------------------AQRELILGAAMRAGF  181 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~Lkpg---G~lv~~~--~~~~~-----------------------~~~~~i~~~~~~aGF  181 (291)
                              .....+|+++++.|+||   |++++.-  .++..                       ...+++..++.++||
T Consensus       154 --------~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf  225 (244)
T d1fp2a2         154 --------KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF  225 (244)
T ss_dssp             --------HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred             --------HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCC
Confidence                    33678999999999998   6666631  12111                       125678889999999


Q ss_pred             CC
Q 043626          182 AG  183 (291)
Q Consensus       182 ~~  183 (291)
                      +.
T Consensus       226 ~~  227 (244)
T d1fp2a2         226 QH  227 (244)
T ss_dssp             CE
T ss_pred             ce
Confidence            86

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.91  E-value=1.4e-09  Score=89.32  Aligned_cols=114  Identities=16%  Similarity=0.093  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL  107 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~  107 (291)
                      .+.+.+...|...-.  +.+|||++||||.++...+.+| ..|++||.++.+++.++++..      .+.++++|+...+
T Consensus        27 ~vrealFn~l~~~~~--~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l  104 (182)
T d2fhpa1          27 KVKESIFNMIGPYFD--GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL  104 (182)
T ss_dssp             HHHHHHHHHHCSCCS--SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh
Confidence            456677777764432  7899999999999999999998 589999999999999988753      3678888874433


Q ss_pred             C---CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEc
Q 043626          108 G---LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIY  162 (291)
Q Consensus       108 ~---~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~  162 (291)
                      .   .....||+|++...... .+           ....+..+..  +|+++|.+++...
T Consensus       105 ~~~~~~~~~fDlIflDPPY~~-~~-----------~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYAK-QE-----------IVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGGG-CC-----------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhhcccCCCcceEEechhhhh-hH-----------HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            2   23558999998754321 11           4456666654  6999999998763

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.4e-09  Score=89.19  Aligned_cols=122  Identities=14%  Similarity=0.181  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEc
Q 043626           31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLG  101 (291)
Q Consensus        31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~  101 (291)
                      .-+.++...++...   .   +.+|||||||+|.++..|+..   +.+++++|+++.+++.|+.+..      .+.++.+
T Consensus        42 ~~~G~lL~~lv~~~---k---pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G  115 (214)
T d2cl5a1          42 DAKGQIMDAVIREY---S---PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG  115 (214)
T ss_dssp             HHHHHHHHHHHHHH---C---CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             HHHHHHHHHHHHhh---C---CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec
Confidence            34445555555554   2   569999999999999999975   5899999999999999987543      2788888


Q ss_pred             cCCCCCC-----CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE--EcCCChHHHH
Q 043626          102 DMGQGLG-----LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ--IYPESVAQRE  170 (291)
Q Consensus       102 D~~~~~~-----~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~--~~~~~~~~~~  170 (291)
                      |..+.++     +..++||+|+....-...           . ....+.+..++|+|||.+++.  +++..++..+
T Consensus       116 d~~e~l~~l~~~~~~~~~D~ifiD~~~~~~-----------~-~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~  179 (214)
T d2cl5a1         116 ASQDLIPQLKKKYDVDTLDMVFLDHWKDRY-----------L-PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLA  179 (214)
T ss_dssp             CHHHHGGGHHHHSCCCCEEEEEECSCGGGH-----------H-HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHH
T ss_pred             cccccccchhhcccccccceeeeccccccc-----------c-cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHH
Confidence            8754332     345789999965322211           0 123456677889999998883  4555444333

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=5.3e-08  Score=87.50  Aligned_cols=141  Identities=16%  Similarity=0.217  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQG  106 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~  106 (291)
                      ....+.+.+++++...+   +..|||+-||+|.++..|++.+..|+|+|+++.+++.|+++.     .++.++.+|....
T Consensus       196 ~~e~l~~~v~~~~~~~~---~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~  272 (358)
T d1uwva2         196 VNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHHHTCCT---TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred             hhhHHHHHHHHhhccCC---CceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhh
Confidence            45578888888887766   679999999999999999999999999999999999998763     3578999988664


Q ss_pred             CC---CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626          107 LG---LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       107 ~~---~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.   .....||+||..        +.+.+      +..++..+.+. +|.-.++++.   ++..+..=...+.+.||..
T Consensus       273 ~~~~~~~~~~~d~vilD--------PPR~G------~~~~~~~l~~~-~~~~ivYVSC---np~TlaRDl~~l~~~gy~l  334 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLD--------PARAG------AAGVMQQIIKL-EPIRIVYVSC---NPATLARDSEALLKAGYTI  334 (358)
T ss_dssp             CSSSGGGTTCCSEEEEC--------CCTTC------CHHHHHHHHHH-CCSEEEEEES---CHHHHHHHHHHHHHTTCEE
T ss_pred             hhhhhhhhccCceEEeC--------CCCcc------HHHHHHHHHHc-CCCEEEEEeC---CHHHHHHHHHHHHHCCCeE
Confidence            43   234679999854        32222      33455566554 6777777877   4444433334566789975


Q ss_pred             --cEEEe-CCCCC
Q 043626          184 --GVVVD-YPHSS  193 (291)
Q Consensus       184 --~~~~~-~p~~~  193 (291)
                        ...+| ||++.
T Consensus       335 ~~i~~~D~FP~T~  347 (358)
T d1uwva2         335 ARLAMLDMFPHTG  347 (358)
T ss_dssp             EEEEEECCSTTSS
T ss_pred             eEEEEEecCCCCc
Confidence              23333 46653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.1e-08  Score=83.83  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=92.0

Q ss_pred             HHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCC
Q 043626           41 LELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLR  110 (291)
Q Consensus        41 lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~  110 (291)
                      .+...+-.+  ...||||||++|.+++.+.+.   ...++++|+.+      .+....+.++.+|+....       ...
T Consensus        14 ~~k~~l~k~--~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~------~~~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          14 QQSDKLFKP--GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP------MDPIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             HHHHCCCCT--TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC------CCCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             HHHhCccCC--CCeEEEEeccCCcceEEEEeeccccceEEEeeccc------ccccCCceEeecccccchhhhhhhhhcc
Confidence            334444443  779999999999999999875   27899999866      133455788999985421       123


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCC
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYP  190 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p  190 (291)
                      .+.||+|+|..+..--.+.+........-....+.-+.++|++||.+|+-++...  ....+...+.+. |.. +.+--|
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~--~~~~l~~~l~~~-F~~-V~~~KP  161 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRSL-FTK-VKVRKP  161 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHHH-EEE-EEEECC
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc--cHHHHHHHHHhh-cCE-EEEECC
Confidence            5689999998775422111111111222235667788899999999999887643  233455544444 776 555556


Q ss_pred             CCCC
Q 043626          191 HSSK  194 (291)
Q Consensus       191 ~~~~  194 (291)
                      .+.+
T Consensus       162 ~aSR  165 (180)
T d1ej0a_         162 DSSR  165 (180)
T ss_dssp             TTSC
T ss_pred             CCcc
Confidence            6654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=9.2e-09  Score=91.31  Aligned_cols=125  Identities=17%  Similarity=0.128  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----------cceEEEccCCCCCCCCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----------EGDLLLGDMGQGLGLRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~~~~~~~~~~fD~Vis  119 (291)
                      +.+||.||.|.|.....+....  .++++|||++.+++.|++.+.          .+.++.+|....+......||+||+
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence            6799999999999999888764  699999999999999988652          3688888875544444678999997


Q ss_pred             CCchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC---CChHHHHHHHHHHHHcCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP---ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~---~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ...-.+..+      .|...+  ..|++.+.++|+|||.++++...   ....-...+.+.+... |..
T Consensus       158 D~~dp~~~~------~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~  219 (312)
T d1uira_         158 DLTDPVGED------NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRY  219 (312)
T ss_dssp             ECCCCBSTT------CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSE
T ss_pred             eCCCccccc------chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-Cce
Confidence            532211111      121112  58999999999999999997532   1222234444555554 754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.80  E-value=2.2e-08  Score=85.36  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+++++.+.+.+   +..|||||||+|.+|..|++.+..+++||+++.+++.++++..   ++.++.+|+.. ++++.
T Consensus         8 ~i~~~iv~~~~~~~---~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~-~~~~~   83 (235)
T d1qama_           8 HNIDKIMTNIRLNE---HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ-FKFPK   83 (235)
T ss_dssp             HHHHHHHTTCCCCT---TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGG-CCCCS
T ss_pred             HHHHHHHHhcCCCC---CCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhh-ccccc
Confidence            45678888888776   7899999999999999999999999999999999999998764   37899999843 45544


Q ss_pred             CcccEEEEC
Q 043626          112 GVVDGAISI  120 (291)
Q Consensus       112 ~~fD~Vis~  120 (291)
                      .....||+|
T Consensus        84 ~~~~~vv~N   92 (235)
T d1qama_          84 NQSYKIFGN   92 (235)
T ss_dssp             SCCCEEEEE
T ss_pred             cccceeeee
Confidence            444567766

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.79  E-value=4.2e-08  Score=85.49  Aligned_cols=121  Identities=18%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC---------------CcceEEEccCCCCCCCCCCccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE---------------VEGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~---------------~~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      +.+||.||+|.|.....+..+. .++++|||++.+++.|++.+               +.+.++.+|....+. ..++||
T Consensus        73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~-~~~~yD  151 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFD  151 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-HCCCEE
T ss_pred             CceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh-ccCCCC
Confidence            6799999999999999888775 68999999999999998643               236788888744332 257899


Q ss_pred             EEEECCchhhhccccccCCchHHHH--HHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          116 GAISISAVQWLCNADKASHEPRLRL--KAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l--~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +||+...-..         .+...+  ..|++.+.++|+|||.++++...  ........+...+.+. |..
T Consensus       152 vIi~D~~~~~---------~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~  213 (276)
T d1mjfa_         152 VIIADSTDPV---------GPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDR  213 (276)
T ss_dssp             EEEEECCCCC--------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSE
T ss_pred             EEEEeCCCCC---------CCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCe
Confidence            9997533211         111112  68999999999999999997632  2345556666777776 764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=8.5e-08  Score=84.04  Aligned_cols=147  Identities=20%  Similarity=0.139  Sum_probs=101.6

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC---------CcceEEEccCCCCCC-CCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE---------VEGDLLLGDMGQGLG-LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~---------~~~~~~~~D~~~~~~-~~~~~fD~Vis  119 (291)
                      +.+||-||-|.|.....+.+..  ..+++|||++.+++.|++.+         +.+.++.+|....+. ...++||+||+
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~  160 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  160 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence            6799999999999999999874  68999999999999998865         236788888654442 33568999997


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCCcEE--EeCCCCCCC
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAGGVV--VDYPHSSKS  195 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~~~~--~~~p~~~~~  195 (291)
                      ...-.+-       .....--..|++.+.++|+|||.++++...  .+......+.+.+.+........  ...|..  .
T Consensus       161 D~~dp~~-------~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty--~  231 (290)
T d1xj5a_         161 DSSDPIG-------PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTY--P  231 (290)
T ss_dssp             CCCCTTS-------GGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTS--G
T ss_pred             cCCCCCC-------cchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeee--c
Confidence            5332110       001111267999999999999999998643  34566777888888884433221  122322  2


Q ss_pred             CcEEEEEeeCCC
Q 043626          196 RKEFLVLTCGPP  207 (291)
Q Consensus       196 ~~~~l~l~~g~~  207 (291)
                      ...|.++++..+
T Consensus       232 ~g~w~f~~as~~  243 (290)
T d1xj5a_         232 SGVIGFMLCSTE  243 (290)
T ss_dssp             GGEEEEEEEECS
T ss_pred             CCceEEEEEeCC
Confidence            346666665543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.1e-09  Score=88.99  Aligned_cols=95  Identities=17%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-----CCCCcccEE
Q 043626           52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-----LRPGVVDGA  117 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-----~~~~~fD~V  117 (291)
                      +.+|||||||+|.++..+++.   +.+++.+|+++...+.|+++..      .+++..+|+.+.++     ...++||+|
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i  139 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  139 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence            569999999999999999975   5799999999999999998753      26788888644332     346789999


Q ss_pred             EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +...--.              .....+..+.++|+|||.+++.
T Consensus       140 fiD~dk~--------------~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         140 VVDADKE--------------NCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EECSCST--------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEeCCHH--------------HHHHHHHHHHHHhcCCcEEEEe
Confidence            9642211              1557788899999999999996

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=1.1e-07  Score=83.51  Aligned_cols=123  Identities=13%  Similarity=0.089  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+||-||.|.|.....+.++.  .++++|||++.+++.|++...         .+.++.+|....+.-..+.||+||+.
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            6799999999999999998873  789999999999999988542         36888888765555556789999976


Q ss_pred             CchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..-.+.        .|...  -..|++.+.+.|+|||.++++...  .+......+...+.+. |..
T Consensus       170 ~~dp~~--------~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~  227 (295)
T d1inla_         170 STDPTA--------GQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPI  227 (295)
T ss_dssp             C------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSE
T ss_pred             CCCCCc--------CchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-cce
Confidence            332211        01111  268999999999999999998643  3445566677777776 654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.73  E-value=1.6e-09  Score=93.03  Aligned_cols=85  Identities=15%  Similarity=0.222  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~  111 (291)
                      .+.+.+++.+.+.+   ...|||||||+|.+|..|++.+..+++||+++.+++.++++..   ++.++++|+. .++++.
T Consensus        16 ~ii~kIv~~~~~~~---~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l-~~~~~~   91 (245)
T d1yuba_          16 KVLNQIIKQLNLKE---TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDIL-QFQFPN   91 (245)
T ss_dssp             TTHHHHHHHCCCCS---SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCT-TTTCCC
T ss_pred             HHHHHHHHhcCCCC---CCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhh-cccccc
Confidence            34677888888776   6799999999999999999999999999999999998887763   5788999984 456667


Q ss_pred             CcccEEEECCch
Q 043626          112 GVVDGAISISAV  123 (291)
Q Consensus       112 ~~fD~Vis~~~l  123 (291)
                      ..++.||++-..
T Consensus        92 ~~~~~vv~NLPY  103 (245)
T d1yuba_          92 KQRYKIVGNIPY  103 (245)
T ss_dssp             SSEEEEEEECCS
T ss_pred             ceeeeEeeeeeh
Confidence            777888887544

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.69  E-value=1.6e-07  Score=76.68  Aligned_cols=137  Identities=23%  Similarity=0.271  Sum_probs=97.3

Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-cceEEEccCCCC---C-CCC
Q 043626           36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-EGDLLLGDMGQG---L-GLR  110 (291)
Q Consensus        36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-~~~~~~~D~~~~---~-~~~  110 (291)
                      |.+.+++.|.+.+   +..++|..||.|..+..|.+.+..|+|+|.++.++..|..... ...+++.+....   + .+.
T Consensus         6 ll~Evl~~l~~~~---g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2           6 LYQEALDLLAVRP---GGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             THHHHHHHHTCCT---TCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHHhcCCCC---CCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence            5677888888776   7899999999999999999998999999999999999987543 357777665331   1 123


Q ss_pred             CCcccEEEECCch--hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626          111 PGVVDGAISISAV--QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF  181 (291)
Q Consensus       111 ~~~fD~Vis~~~l--~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF  181 (291)
                      .+.+|+|+...-+  .++.+++.    --..+...|......|++||++++..+..  ..-..+...+.+.+|
T Consensus        83 ~~~vdgIl~DLGvSs~qld~~~r----e~~~~~~~L~~~~~~lk~gg~~~ii~fhs--~Ed~ivk~~~~e~~~  149 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHLDDPSD----ELNALKEFLEQAAEVLAPGGRLVVIAFHS--LEDRVVKRFLRESGL  149 (182)
T ss_dssp             CSCEEEEEEECSCCHHHHHCGGT----HHHHHHHHHHHHHHHEEEEEEEEEEECSH--HHHHHHHHHHHHHCS
T ss_pred             CCccCEEEEEccCCHHHhhcchH----HHHHHHHHHHHHHhhhCCCCeEEEEeccc--chhHHHHHHHhhccc
Confidence            4689999985322  23433322    11224567888999999999999877643  233445565565544

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=5e-08  Score=86.67  Aligned_cols=152  Identities=16%  Similarity=0.149  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----C---CeEEEEeCCHHHHHHHHhcC----CcceEEEcc
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----G---HQWIGLDISQSMLNIALERE----VEGDLLLGD  102 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g---~~v~gvDis~~ml~~a~~~~----~~~~~~~~D  102 (291)
                      ..|++.+..++....   +.+|||.|||+|.+...+.+.    +   ..++|+|+++.++..|+.+.    ....+..+|
T Consensus       103 ~~m~~l~~~~~~~~~---~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d  179 (328)
T d2f8la1         103 FIVAYLLEKVIQKKK---NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD  179 (328)
T ss_dssp             HHHHHHHHHHHTTCS---EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC
T ss_pred             HHHHHHHHHHhCCCC---CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc
Confidence            345544445555444   679999999999998877642    2   47999999999999987653    335667777


Q ss_pred             CCCCCCCCCCcccEEEECCchhhhccccc-------cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHH
Q 043626          103 MGQGLGLRPGVVDGAISISAVQWLCNADK-------ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELIL  173 (291)
Q Consensus       103 ~~~~~~~~~~~fD~Vis~~~l~~l~~~~~-------~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~  173 (291)
                      ...  ......||+||++..+......+.       ...........|+..+.+.|++||++++.+...  .......+.
T Consensus       180 ~~~--~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR  257 (328)
T d2f8la1         180 GLA--NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVD  257 (328)
T ss_dssp             TTS--CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHH
T ss_pred             ccc--ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHH
Confidence            533  234578999999976532211100       000011113468999999999999988865221  112233455


Q ss_pred             HHHHHcCCCCcEEEeCCC
Q 043626          174 GAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       174 ~~~~~aGF~~~~~~~~p~  191 (291)
                      ..+.+.+.- ..+++.|.
T Consensus       258 ~~L~~~~~i-~~ii~lp~  274 (328)
T d2f8la1         258 KFIKKNGHI-EGIIKLPE  274 (328)
T ss_dssp             HHHHHHEEE-EEEEECCG
T ss_pred             HHHHhCCcE-EEEEECCc
Confidence            555555422 24566653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.67  E-value=2.5e-08  Score=83.10  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~  111 (291)
                      .+++.+++++..+.   +.+|||.|||+|.+...+.+.   ...++|+|+++.++..+.    ...++++|....  ...
T Consensus         6 ~i~~~m~~l~~~~~---~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~--~~~   76 (223)
T d2ih2a1           6 EVVDFMVSLAEAPR---GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLW--EPG   76 (223)
T ss_dssp             HHHHHHHHHCCCCT---TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGC--CCS
T ss_pred             HHHHHHHHhcCCCC---cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhcc--ccc
Confidence            45677888887766   779999999999988887754   367999999987654432    346677775332  235


Q ss_pred             CcccEEEECCchhhhccccccC--Cc----------------hHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHH
Q 043626          112 GVVDGAISISAVQWLCNADKAS--HE----------------PRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQREL  171 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~--~~----------------p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~  171 (291)
                      ..||+|+++..+..........  ..                .......|+..+.+.|++||++++.+...  .......
T Consensus        77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~  156 (223)
T d2ih2a1          77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFAL  156 (223)
T ss_dssp             SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHH
T ss_pred             cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHH
Confidence            7899999996653221111000  00                00013467888999999999998875221  1122344


Q ss_pred             HHHHHHHcC
Q 043626          172 ILGAAMRAG  180 (291)
Q Consensus       172 i~~~~~~aG  180 (291)
                      +.+.+.+.+
T Consensus       157 lR~~l~~~~  165 (223)
T d2ih2a1         157 LREFLAREG  165 (223)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHhcC
Confidence            555555543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.1e-07  Score=83.13  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=92.1

Q ss_pred             HhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC---------CcceEEEccCCCCCCCCC
Q 043626           43 LLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE---------VEGDLLLGDMGQGLGLRP  111 (291)
Q Consensus        43 lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~---------~~~~~~~~D~~~~~~~~~  111 (291)
                      ++.++.   +.+||-||-|.|.....+.+.  ..++++|||++.+++.|++.+         +.+.++.+|....+.-..
T Consensus        73 l~~~~~---pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  149 (285)
T d2o07a1          73 LCSHPN---PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQ  149 (285)
T ss_dssp             HTTSSS---CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCS
T ss_pred             hhhCcC---cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCC
Confidence            344554   779999999999999999987  379999999999999998865         346888888755444446


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ++||+||+...-..-       .....--..|++.+.+.|+|||.++++...  ........+...+... |..
T Consensus       150 ~~yDvIi~D~~~p~~-------~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~  215 (285)
T d2o07a1         150 DAFDVIITDSSDPMG-------PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPV  215 (285)
T ss_dssp             SCEEEEEEECC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSE
T ss_pred             CCCCEEEEcCCCCCC-------cccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCe
Confidence            789999976322110       001111257899999999999999998643  2445555666666555 764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=2.5e-07  Score=80.33  Aligned_cols=124  Identities=15%  Similarity=0.056  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+||-||-|.|.....+.++ + .++++|||++.+++.|++.++         .+.++.+|....+.....+||+||+.
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D  155 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence            679999999999999999986 3 799999999999999988652         36888888755444456789999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..-.+-. +      ...--..|++.+.++|+|||.++.+...  .+......+...+.+. |..
T Consensus       156 ~~~p~~~-~------~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~  212 (274)
T d1iy9a_         156 STEPVGP-A------VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPI  212 (274)
T ss_dssp             CSSCCSC-C------CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSE
T ss_pred             CCCCCCc-c------hhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-cCc
Confidence            4322100 0      0011258999999999999999998632  2445556677777766 543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.62  E-value=2.5e-07  Score=81.56  Aligned_cols=124  Identities=17%  Similarity=0.085  Sum_probs=87.4

Q ss_pred             CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626           52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI  120 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~  120 (291)
                      +.+||-||-|.|.....+.++.  .++++|||++.+++.|++.++         .+.++.+|....+......||+||+.
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D  186 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  186 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence            6799999999999999999874  699999999999999998653         25777777655444446789999986


Q ss_pred             CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626          121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~  183 (291)
                      ..-..-       .....--..|++.+.++|+|||.++.+...  .+......+...+... |..
T Consensus       187 ~~dp~~-------~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~  243 (312)
T d2b2ca1         187 SSDPVG-------PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPA  243 (312)
T ss_dssp             CC--------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSE
T ss_pred             CCCCCC-------cchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cce
Confidence            432210       011111368999999999999999998532  2344556666666665 653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.60  E-value=3.1e-08  Score=83.89  Aligned_cols=108  Identities=16%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDM  103 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~  103 (291)
                      +.++...++....      +.+||||||++|.++..+++.   +..++.+|+++...+.|++++.      .+.++.+|.
T Consensus        47 ~g~~L~~L~~~~~------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          47 EGQFLSMLLKLIN------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             HHHHHHHHHHHHT------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             HHHHHHHHHHhcC------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            4445555555432      569999999999999999964   5899999999999999998653      268888887


Q ss_pred             CCCCC------CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          104 GQGLG------LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       104 ~~~~~------~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+.++      ...++||+|+....        +..      ....+..+..+|+|||.+++.
T Consensus       121 ~~~L~~l~~~~~~~~~fD~iFiDa~--------k~~------y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         121 LPVLDEMIKDEKNHGSYDFIFVDAD--------KDN------YLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHHHHHHHHCGGGTTCBSEEEECSC--------STT------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHHHHHhccccCCceeEEEeccc--------hhh------hHHHHHHHHhhcCCCcEEEEc
Confidence            54333      13568999996421        111      567888999999999999996

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=9.8e-07  Score=74.87  Aligned_cols=123  Identities=8%  Similarity=-0.058  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHh-----cCCcceEEEccCCCCC--CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALE-----REVEGDLLLGDMGQGL--GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~-----~~~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~  122 (291)
                      ...|+|||+|.|.-|..|+=.  ..+++.+|.+..-+...+.     ...++.+++..+....  .-..+.||+|+|-.+
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv  150 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV  150 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh
Confidence            569999999999999888853  4899999999976655443     2345677777653211  112468999998744


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY  189 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~  189 (291)
                      -.               +..++..+..++++||.+++.-.+...++++.....+...|+.-..+..|
T Consensus       151 a~---------------l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~  202 (239)
T d1xdza_         151 AR---------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSF  202 (239)
T ss_dssp             SC---------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hC---------------HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEE
Confidence            32               66888999999999999999887777778888888888888875344444

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.48  E-value=6.7e-08  Score=79.00  Aligned_cols=115  Identities=13%  Similarity=-0.002  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc-------ceEEEccCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE-------GDLLLGDMGQG  106 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~-------~~~~~~D~~~~  106 (291)
                      .+.+.+.+.|...-.  +.+|||+.||||.++...+.+| ..++.||.+...+...+++...       ..+...|....
T Consensus        29 ~vrealFn~l~~~~~--~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~  106 (183)
T d2ifta1          29 RVKETLFNWLMPYIH--QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF  106 (183)
T ss_dssp             HHHHHHHHHHHHHHT--TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred             HHHHHHHHHhhhhcc--cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccc
Confidence            344455555533211  6799999999999999999999 6999999999999988886432       23444443222


Q ss_pred             C--CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEcC
Q 043626          107 L--GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIYP  163 (291)
Q Consensus       107 ~--~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~~  163 (291)
                      +  ......||+|++......-         .   ....+..+..  +|+++|.+++....
T Consensus       107 l~~~~~~~~fDlIFlDPPY~~~---------~---~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         107 LKQPQNQPHFDVVFLDPPFHFN---------L---AEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             TTSCCSSCCEEEEEECCCSSSC---------H---HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ccccccCCcccEEEechhHhhh---------h---HHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            2  2234579999987554321         1   4456666654  69999999998643

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2e-06  Score=74.57  Aligned_cols=82  Identities=16%  Similarity=0.242  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG  108 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~  108 (291)
                      .+.+.+++.+.+.+   ...|||||||+|.+|..|++.+..+++|++++.++...++...      ++.++.+|+.. ..
T Consensus         8 ~i~~kIv~~~~~~~---~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~-~~   83 (278)
T d1zq9a1           8 LIINSIIDKAALRP---TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK-TD   83 (278)
T ss_dssp             HHHHHHHHHTCCCT---TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT-SC
T ss_pred             HHHHHHHHHhCCCC---CCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh-hh
Confidence            45677888888766   6799999999999999999999999999999999999987643      36889999843 23


Q ss_pred             CCCCcccEEEECCc
Q 043626          109 LRPGVVDGAISISA  122 (291)
Q Consensus       109 ~~~~~fD~Vis~~~  122 (291)
                        ...++.||+|-.
T Consensus        84 --~~~~~~vV~NLP   95 (278)
T d1zq9a1          84 --LPFFDTCVANLP   95 (278)
T ss_dssp             --CCCCSEEEEECC
T ss_pred             --hhhhhhhhcchH
Confidence              234677888733

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.5e-07  Score=79.79  Aligned_cols=141  Identities=15%  Similarity=0.139  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCC
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQ  105 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~  105 (291)
                      +|..-+..++.+|...+   +..|||+++|+|.-+..|++.+  ..++++|+++.-+...+++..    ....+..+-..
T Consensus        86 vQD~sS~l~~~~L~~~~---g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~  162 (284)
T d1sqga2          86 VQDASAQGCMTWLAPQN---GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY  162 (284)
T ss_dssp             ECCHHHHTHHHHHCCCT---TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC
T ss_pred             eccccccccccccCccc---cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccc
Confidence            34455556666777666   7899999999999999998875  689999999988777766542    22233322212


Q ss_pred             CC-CCCCCcccEEEECC---chhhh-ccccccC-Cch------HHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626          106 GL-GLRPGVVDGAISIS---AVQWL-CNADKAS-HEP------RLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL  173 (291)
Q Consensus       106 ~~-~~~~~~fD~Vis~~---~l~~l-~~~~~~~-~~p------~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~  173 (291)
                      .. ....+.||.|++-.   ....+ .+++... ..+      ...-..+|..+...|+|||++|-++..-++++-+.+.
T Consensus       163 ~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv  242 (284)
T d1sqga2         163 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQI  242 (284)
T ss_dssp             THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             cchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHH
Confidence            11 12356899999642   11111 1122110 011      1113678889999999999999987764444433333


Q ss_pred             HH
Q 043626          174 GA  175 (291)
Q Consensus       174 ~~  175 (291)
                      ..
T Consensus       243 ~~  244 (284)
T d1sqga2         243 KA  244 (284)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=3.5e-06  Score=69.90  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHh-----cCCcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALE-----REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~-----~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +..|||||||.|.-|..|+=.  ..+++.+|.+..-+...++     ...++.+++..+.+ +. ...+||+|+|-.+-.
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~-~~~~fD~V~sRA~~~  143 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAFAS  143 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCSSS
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhh-hc-cccccceehhhhhcC
Confidence            569999999999999998865  4799999999976665544     23457888888854 32 246899999864432


Q ss_pred             hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHH
Q 043626          125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQ  168 (291)
Q Consensus       125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~  168 (291)
                                     +..++..+...++++|.+++.-+....++
T Consensus       144 ---------------~~~ll~~~~~~l~~~g~~~~~KG~~~~eE  172 (207)
T d1jsxa_         144 ---------------LNDMVSWCHHLPGEQGRFYALKGQMPEDE  172 (207)
T ss_dssp             ---------------HHHHHHHHTTSEEEEEEEEEEESSCCHHH
T ss_pred             ---------------HHHHHHHHHHhcCCCcEEEEECCCCHHHH
Confidence                           56788889999999999999876554443

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=5.9e-07  Score=76.96  Aligned_cols=68  Identities=10%  Similarity=0.102  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQ  105 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~  105 (291)
                      .+++++++.+.+.+   +..|||||||+|.+|..|++.+.++++||+++.+++..+++.   .++.++.+|+..
T Consensus         8 ~~~~~Iv~~~~~~~---~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_           8 FVIDSIVSAINPQK---GQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHHHhcCCCC---CCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            45678888888766   679999999999999999999999999999999999998865   347888898743

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.30  E-value=3.5e-06  Score=71.32  Aligned_cols=142  Identities=16%  Similarity=0.101  Sum_probs=81.8

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHH--HHHhcCC-c-ceEEEccCCCCCCCCCCc
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLN--IALEREV-E-GDLLLGDMGQGLGLRPGV  113 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~--~a~~~~~-~-~~~~~~D~~~~~~~~~~~  113 (291)
                      +.+...+.+   ...|+|+|||.|.++..++.+.  ..+.|+|+--...+  ...+... + +.+...+.  -....++.
T Consensus        58 ~~~~~~~~~---~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~d--v~~l~~~~  132 (257)
T d2p41a1          58 FVERNLVTP---EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVD--VFFIPPER  132 (257)
T ss_dssp             HHHTTSSCC---CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCC--TTTSCCCC
T ss_pred             HHHhcCccC---CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhh--HHhcCCCc
Confidence            334444444   5699999999999999999874  57788887322100  0000000 1 23332221  12334788


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-CCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-PESVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                      .|+|+|..+.. -.+..    .-..+..+++.-+...|+|||-|++-+. |+.++.++.|.. +.+. |.+ ..+.-|.|
T Consensus       133 ~D~vlcDm~es-s~~~~----vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~-lq~~-fgg-~lVR~P~S  204 (257)
T d2p41a1         133 CDTLLCDIGES-SPNPT----VEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEA-LQRK-HGG-ALVRNPLS  204 (257)
T ss_dssp             CSEEEECCCCC-CSSHH----HHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHH-HHHH-HCC-EEECCTTS
T ss_pred             CCEEEeeCCCC-CCCch----hhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHH-HHHH-hCC-eeEcCCCC
Confidence            99999986532 11110    1112234677788899999999999754 555555554443 3332 665 55666766


Q ss_pred             CC
Q 043626          193 SK  194 (291)
Q Consensus       193 ~~  194 (291)
                      ..
T Consensus       205 Rn  206 (257)
T d2p41a1         205 RN  206 (257)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.25  E-value=1.8e-06  Score=76.12  Aligned_cols=145  Identities=12%  Similarity=0.010  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626           33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG  104 (291)
Q Consensus        33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~  104 (291)
                      |..-+..+..+|...+   +..|||++||+|.-+..|++.   ...++++|+++.-+..+..+..     ++.++..|. 
T Consensus       101 QD~aS~l~~~~l~~~~---g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~-  176 (313)
T d1ixka_         101 QEASSMYPPVALDPKP---GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-  176 (313)
T ss_dssp             CCHHHHHHHHHHCCCT---TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-
T ss_pred             ecccccchhhcccCCc---cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccc-
Confidence            4444555666676665   789999999999998888865   3689999999998887766542     344444453 


Q ss_pred             CCCCCCCCcccEEEECCc---hhhh-ccccccCC-ch------HHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH-
Q 043626          105 QGLGLRPGVVDGAISISA---VQWL-CNADKASH-EP------RLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI-  172 (291)
Q Consensus       105 ~~~~~~~~~fD~Vis~~~---l~~l-~~~~~~~~-~p------~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i-  172 (291)
                      ..++...+.||.|++-..   ...+ .+++.... .+      ......++.+...+|||||.+|.++..-.+++-+.+ 
T Consensus       177 ~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV  256 (313)
T d1ixka_         177 LHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI  256 (313)
T ss_dssp             GGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             cccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHH
Confidence            233444678999986421   1111 11111111 11      112367889999999999999988765444333333 


Q ss_pred             HHHHHHcCC
Q 043626          173 LGAAMRAGF  181 (291)
Q Consensus       173 ~~~~~~aGF  181 (291)
                      ...+.+.+|
T Consensus       257 ~~~L~~~~~  265 (313)
T d1ixka_         257 QWALDNFDV  265 (313)
T ss_dssp             HHHHHHSSE
T ss_pred             HHHHhcCCC
Confidence            333344443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.23  E-value=3.2e-06  Score=77.50  Aligned_cols=151  Identities=14%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhcC------
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---------------GHQWIGLDISQSMLNIALERE------   93 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---------------g~~v~gvDis~~ml~~a~~~~------   93 (291)
                      .+++.+++++....   +.+|+|.+||+|.+...+.+.               ...++|+|+++.+..+|..+.      
T Consensus       149 ~Iv~~mv~ll~~~~---~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         149 PLIQAMVDCINPQM---GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             hhhHhhheeccCcc---cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            45667778877654   679999999999998777653               135999999999999887643      


Q ss_pred             -CcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc------CCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--
Q 043626           94 -VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA------SHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--  164 (291)
Q Consensus        94 -~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~------~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--  164 (291)
                       ....+...|....  .....||+||++..+.........      .......-..|+..+..+|++||++++.+...  
T Consensus       226 ~~~~~i~~~d~l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L  303 (425)
T d2okca1         226 TDRSPIVCEDSLEK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVL  303 (425)
T ss_dssp             SSCCSEEECCTTTS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             cccceeecCchhhh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHh
Confidence             1246677776432  335789999999776422111100      01111223569999999999999988865321  


Q ss_pred             -ChHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          165 -SVAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       165 -~~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                       +......+.+.+.+.+.-. .++..|.
T Consensus       304 ~~~~~~~~iR~~Ll~~~~i~-aIi~LP~  330 (425)
T d2okca1         304 FEAGAGETIRKRLLQDFNLH-TILRLPT  330 (425)
T ss_dssp             HCSTHHHHHHHHHHHHEEEE-EEEECCS
T ss_pred             hhhhhHHHHHHHHHHhcchh-HhhcCCc
Confidence             1122345666666554332 5556653

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.04  E-value=3.6e-06  Score=71.04  Aligned_cols=97  Identities=20%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchhHHHHHH----c--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEECCc
Q 043626           52 PRLLLDIGCGSGLSGETLSE----N--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISISA  122 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~----~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~~~  122 (291)
                      |..|||||++.|.++..++.    .  ..+++|+|+.+............+.++.+|.....   .+....+|+|+.-+.
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  160 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence            56999999999998877663    2  37999999988665555555567899999864321   123456888775433


Q ss_pred             hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                       |+-          ...+.. + .++.+|++||.+++..
T Consensus       161 -H~~----------~~v~~~-~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         161 -HAN----------TFNIMK-W-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             -CSS----------HHHHHH-H-HHHHTCCTTCEEEECS
T ss_pred             -cch----------HHHHHH-H-HHhcccCcCCEEEEEc
Confidence             211          111223 3 3568999999999853

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=6e-06  Score=74.45  Aligned_cols=106  Identities=14%  Similarity=0.072  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH-cC-CeEEEEeCCHHHHHHHHhcCCc----------------
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE-NG-HQWIGLDISQSMLNIALEREVE----------------   95 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~-~g-~~v~gvDis~~ml~~a~~~~~~----------------   95 (291)
                      +.++-.+++.+   .   +.+|||..||||..+...+. .+ ..|+++|+|+..++.++++...                
T Consensus        34 RDlsvl~~~~~---~---~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~  107 (375)
T d2dula1          34 RDIVVVLLNIL---N---PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK  107 (375)
T ss_dssp             HHHHHHHHHHH---C---CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred             hHHHHHHHHHh---C---CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence            34444455554   2   56999999999999986654 45 6899999999999999887421                


Q ss_pred             ----ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           96 ----GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        96 ----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                          +.+.+.|+...+......||+|....               ......|+..+.+.++.||.+.++
T Consensus       108 ~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP---------------fGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         108 GEKTIVINHDDANRLMAERHRYFHFIDLDP---------------FGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             SSSEEEEEESCHHHHHHHSTTCEEEEEECC---------------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceeEeehhhhhhhhHhhcCcCCcccCCC---------------CCCcHHHHHHHHHHhccCCEEEEE
Confidence                23444454222222346799988542               111357899999999999999995

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.6e-05  Score=65.65  Aligned_cols=137  Identities=13%  Similarity=-0.010  Sum_probs=81.4

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGL  109 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~  109 (291)
                      ..++.+|...+   +..|||++||+|.-+..|++.   ...++++|+++.-+..++++.     .++.+...|.....+.
T Consensus        84 ~l~~~~L~~~~---g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          84 CLPAMLLDPPP---GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS  160 (293)
T ss_dssp             GHHHHHHCCCT---TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred             cccccccCCCc---cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc
Confidence            34555666555   779999999999988888865   378999999999888777654     3356777776332222


Q ss_pred             --CCCcccEEEECCc------hhhhcccccc---CCc----hHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626          110 --RPGVVDGAISISA------VQWLCNADKA---SHE----PRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILG  174 (291)
Q Consensus       110 --~~~~fD~Vis~~~------l~~l~~~~~~---~~~----p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~  174 (291)
                        ..+.||.|++...      +...++....   ...    -......++..+. .|+|||.+|-++..-.+++-+.+.+
T Consensus       161 ~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~  239 (293)
T d2b9ea1         161 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVR  239 (293)
T ss_dssp             CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHH
T ss_pred             ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHH
Confidence              1357999997522      1111110000   000    0111133455555 4799999998877655544444444


Q ss_pred             HHHH
Q 043626          175 AAMR  178 (291)
Q Consensus       175 ~~~~  178 (291)
                      .+.+
T Consensus       240 ~~L~  243 (293)
T d2b9ea1         240 DALQ  243 (293)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            4443

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=1.5e-05  Score=74.89  Aligned_cols=152  Identities=15%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----C----------------CeEEEEeCCHHHHHHHHhcCC
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----G----------------HQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g----------------~~v~gvDis~~ml~~a~~~~~   94 (291)
                      .+++.+++++....   +.+|+|-+||+|.+...+.+.    .                ..++|+|+++.+...|+-+..
T Consensus       151 ~Iv~~mv~ll~~~~---~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         151 PLIKTIIHLLKPQP---REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             HHHHHHHHHHCCCT---TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             chhHhhhhcccCcc---chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            45667778887655   679999999999988765542    1                258999999999998875431


Q ss_pred             ----c------ceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc--C--CchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626           95 ----E------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA--S--HEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus        95 ----~------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~--~--~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                          .      ..+...+....-......||+||+|..+.--...+..  .  ..... -..|+..+.+.|++||++.+.
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~gGr~aiI  306 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVV  306 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccccCcEEEE
Confidence                1      1233333211111234679999999766321111100  0  01111 246999999999999999886


Q ss_pred             EcCC---ChHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626          161 IYPE---SVAQRELILGAAMRAGFAGGVVVDYPH  191 (291)
Q Consensus       161 ~~~~---~~~~~~~i~~~~~~aGF~~~~~~~~p~  191 (291)
                      +...   +......+.+.+.+.+.-. .++..|.
T Consensus       307 lP~~~Lf~~~~~~~iR~~Ll~~~~i~-aII~LP~  339 (524)
T d2ar0a1         307 VPDNVLFEGGKGTDIRRDLMDKCHLH-TILRLPT  339 (524)
T ss_dssp             EEHHHHHCCTHHHHHHHHHHHHEEEE-EEEECCS
T ss_pred             EehHHhhhhhhhHHHHHHHHHcCCce-EEEECCC
Confidence            5211   1112234666666654432 5566653

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.55  E-value=0.00043  Score=61.46  Aligned_cols=141  Identities=19%  Similarity=0.186  Sum_probs=79.1

Q ss_pred             cccccchhHH----HHHHHHHHHHHHh-CCCCCCCCCeEEEEcCCCchhHHHHHHc------------C------CeEEE
Q 043626           22 KYTSSSRIID----IQAKLSERALELL-ALPDDGVPRLLLDIGCGSGLSGETLSEN------------G------HQWIG   78 (291)
Q Consensus        22 ~Y~~~~~~~~----iq~~~~~~~lelL-~~~~~~~~~~VLDiGcGsG~~~~~L~~~------------g------~~v~g   78 (291)
                      .|..++..+.    ....+.+.++.-+ .........+|.|+||.+|..+..+...            +      .+|..
T Consensus        17 SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~   96 (359)
T d1m6ex_          17 SYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFL   96 (359)
T ss_dssp             TTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Confidence            4666665433    2233444444433 2221111467999999999877443321            1      34556


Q ss_pred             EeCCHHHHHHHHhcCCc---------ceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc-------C----Cch--
Q 043626           79 LDISQSMLNIALEREVE---------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA-------S----HEP--  136 (291)
Q Consensus        79 vDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~-------~----~~p--  136 (291)
                      -|.-.+=-...-...+.         +.-+.+.+ ..--|+.++.|+++|.+++|||..-...       .    ..|  
T Consensus        97 nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF-Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~  175 (359)
T d1m6ex_          97 NDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF-YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS  175 (359)
T ss_dssp             EECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS-SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCT
T ss_pred             CCCCcchHHHHHHhccccccCCCCeEEEecCCch-hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHH
Confidence            66544322222121111         11123333 2224778999999999999998641100       0    011  


Q ss_pred             ---------HHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626          137 ---------RLRLKAFFGSLYRCLARGARAVFQIYP  163 (291)
Q Consensus       137 ---------~~~l~~~l~~l~~~LkpgG~lv~~~~~  163 (291)
                               .+++..||+.=+.-|.|||++++.+.+
T Consensus       176 v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             TSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence                     345788898889999999999998644

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.46  E-value=0.00044  Score=54.28  Aligned_cols=103  Identities=15%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC--------C
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL--------G  108 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~--------~  108 (291)
                      ++++...+++   +.+||-+|||. |.++..+++. |.+++++|.++.-++.|++......+...+.....        .
T Consensus        17 ~a~~~~~~~~---g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          17 HACRRAGVQL---GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHhCCCC---CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            4456666665   67999999985 6666666654 78999999999999999886554333322211100        0


Q ss_pred             CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .....+|+||-...-                 ...+..+.++|+++|++++.-
T Consensus        94 ~~g~g~D~vid~~g~-----------------~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGN-----------------EKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             HSSSCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             ccccCCceeeecCCC-----------------hHHHHHHHHHHhcCCceEEEe
Confidence            013468988853221                 245777889999999999753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00018  Score=56.87  Aligned_cols=102  Identities=15%  Similarity=0.058  Sum_probs=65.5

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCC-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCCCCCCCccc
Q 043626           39 RALELLALPDDGVPRLLLDIGCG-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLG-DMGQGLGLRPGVVD  115 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcG-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~~~~~~~fD  115 (291)
                      .++.....++   +.+||-+||| .|.++..+++. |.+++++|.++..++.|++.... .++.. +-.+......+.||
T Consensus        18 ~al~~~~~~~---g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          18 SPLVRNGCGP---GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-HYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             HHHHHTTCST---TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-EEEEGGGTSCHHHHSCSCEE
T ss_pred             HHHHHhCcCC---CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-EEeeccchHHHHHhhhcccc
Confidence            3455556665   7899999998 46666666654 88999999999999999876543 22222 21111112245799


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +|+....-.+-               ..+....++|+|+|++++
T Consensus        94 ~vi~~~~~~~~---------------~~~~~~~~~l~~~G~iv~  122 (168)
T d1piwa2          94 LIVVCASSLTD---------------IDFNIMPKAMKVGGRIVS  122 (168)
T ss_dssp             EEEECCSCSTT---------------CCTTTGGGGEEEEEEEEE
T ss_pred             eEEEEecCCcc---------------chHHHHHHHhhccceEEE
Confidence            88864221110               113456889999999988

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.33  E-value=0.00025  Score=60.83  Aligned_cols=57  Identities=25%  Similarity=0.427  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      .+.++++++...+    +..|||.-||||..+.+..+.|..++|+|+++..++.|.++..+
T Consensus       238 ~L~~rlI~~~s~~----gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRMLTEP----DDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHHCCT----TCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhcccC----CCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            6788888887543    67999999999999999999999999999999999999998754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.20  E-value=0.00031  Score=58.49  Aligned_cols=56  Identities=29%  Similarity=0.327  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC
Q 043626           34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE   93 (291)
Q Consensus        34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~   93 (291)
                      ..+.++++++...+    +..|||.-||||..+.+..+.|..++|+|+++..++.|.++.
T Consensus       199 ~~L~~~lI~~~s~~----gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         199 RDLIERIIRASSNP----NDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             HHHHHHHHHHHCCT----TCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhCCC----CCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence            36788899888644    679999999999999999999999999999999999999875

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.13  E-value=0.00021  Score=60.36  Aligned_cols=86  Identities=12%  Similarity=-0.016  Sum_probs=63.2

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC--------------CcceEEEccC
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE--------------VEGDLLLGDM  103 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~--------------~~~~~~~~D~  103 (291)
                      +.+.+.+.++.. ...+|||..||.|..+..++..|++|+++|-++.+.....+..              ..++++.+|.
T Consensus        76 ~~l~kA~gl~~~-~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          76 EAVAKAVGIKGD-YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             SHHHHHTTCBTT-BCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             hHHHHHhcCCCC-CCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            455566666542 1358999999999999999999999999999997654443221              1368899986


Q ss_pred             CCCCCCCCCcccEEEECCchh
Q 043626          104 GQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus       104 ~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      .+.+.-....||+|+.-..+.
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFP  175 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCc
Confidence            555544457899999876664

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0025  Score=55.03  Aligned_cols=130  Identities=13%  Similarity=0.098  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC---eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---CCCCcccEEEECCchhh
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH---QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---LRPGVVDGAISISAVQW  125 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~---~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---~~~~~fD~Vis~~~l~~  125 (291)
                      +.+|+|+.||.|.+..-|...|.   .+.++|+++.+++..+.++++..++..|+.+ +.   ++...+|+++....-|.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~-~~~~~~~~~~~Dll~ggpPCq~   80 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEG-ITLEEFDRLSFDMILMSPPCQP   80 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGG-CCHHHHHHHCCSEEEECCC---
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhh-CCHhHcCCCCccEEEeeccccc
Confidence            67999999999999888877773   3679999999999999999888888888843 32   22246899998877666


Q ss_pred             hcccccc--CCchHHHHHHHHHHHHHhc--cCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCC
Q 043626          126 LCNADKA--SHEPRLRLKAFFGSLYRCL--ARGARAVFQIYPE--SVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       126 l~~~~~~--~~~p~~~l~~~l~~l~~~L--kpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~  183 (291)
                      +..+-+.  ..++...+--.+-.+...+  +|. .+++.--+.  .....+.|...|...||.-
T Consensus        81 fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v  143 (343)
T d1g55a_          81 FTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQY  143 (343)
T ss_dssp             ---------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             ccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccc
Confidence            5443322  2233222222222233334  465 455543221  2245678888999999875

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.03  E-value=0.0085  Score=50.94  Aligned_cols=130  Identities=13%  Similarity=0.054  Sum_probs=88.3

Q ss_pred             CeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           53 RLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      ++|||+-||.|.+..-|...|. .+.++|+++...+..+.+++ ..++.+|+.+.-+..-..+|+++..+.-|-+..+.+
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~   79 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-AKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGS   79 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-SEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-CCCccCChhhCCHhHcccccEEeecccccccccccc
Confidence            3799999999999999888885 45699999999998888886 467889985532322346899998877766554432


Q ss_pred             c--CCchHHHHHHHHHHHHHhccCCcEEEEEEc----CCChHHHHHHHHHHHHcCCCC
Q 043626          132 A--SHEPRLRLKAFFGSLYRCLARGARAVFQIY----PESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       132 ~--~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~----~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      .  ..++...+---+-.+...++|.-.++=.+-    .........+...+...||..
T Consensus        80 ~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v  137 (324)
T d1dcta_          80 LRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDV  137 (324)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEE
T ss_pred             cccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCcc
Confidence            2  244544443334446677888643332321    123456677778888888875

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.98  E-value=0.0036  Score=53.82  Aligned_cols=130  Identities=12%  Similarity=-0.070  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      +.+|||+-||.|.+..-|...|. .+.++|+++.+++..+.++++.  .++|+.+..+..-..+|+++..+.-|-+..+.
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag   88 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNEKTIPDHDILCAGFPCQAFSISG   88 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCGGGSCCCSEEEEECCCTTTCTTS
T ss_pred             CCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--CcCchhcCchhhcceeeeeecccccchhhhhh
Confidence            68999999999999999999985 4567999999999999888763  35777443232335689999887666554443


Q ss_pred             cc--CCchHHHHHHHHHHHHHhccCCcEEEEEEc----CCChHHHHHHHHHHHHcCCCC
Q 043626          131 KA--SHEPRLRLKAFFGSLYRCLARGARAVFQIY----PESVAQRELILGAAMRAGFAG  183 (291)
Q Consensus       131 ~~--~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~----~~~~~~~~~i~~~~~~aGF~~  183 (291)
                      +.  ..+++..+-..+-.+.+.++|.-.++=.+.    ......+..+...+...||..
T Consensus        89 ~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~  147 (327)
T d2c7pa1          89 KQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSF  147 (327)
T ss_dssp             CCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC
T ss_pred             hhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcc
Confidence            22  234443333334455677788643332221    234456788899999999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.002  Score=50.54  Aligned_cols=102  Identities=17%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC------
Q 043626           38 ERALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG------  108 (291)
Q Consensus        38 ~~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~------  108 (291)
                      -++++...+.+   +..||=+|||+ |.++..++.. |. .|+++|.++.-++.|++..... ++..+- +...      
T Consensus        16 ~~a~~~~~~~~---gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~-~~~~~~-~~~~~~~~~~   90 (171)
T d1pl8a2          16 IHACRRGGVTL---GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL-VLQISK-ESPQEIARKV   90 (171)
T ss_dssp             HHHHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE-EEECSS-CCHHHHHHHH
T ss_pred             HHHHHHhCCCC---CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc-cccccc-cccccccccc
Confidence            34566667665   67999999987 5555555554 65 8999999999999998765432 121111 1100      


Q ss_pred             --CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          109 --LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       109 --~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                        -....+|+|+-...-                 ...+....++|++||++++.-
T Consensus        91 ~~~~g~g~Dvvid~~G~-----------------~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          91 EGQLGCKPEVTIECTGA-----------------EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             HHHHTSCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             cccCCCCceEEEeccCC-----------------chhHHHHHHHhcCCCEEEEEe
Confidence              013468998864221                 256788999999999999853

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.0009  Score=58.51  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhCCCC---CCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc--ceEEEccCC
Q 043626           35 KLSERALELLALPD---DGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE--GDLLLGDMG  104 (291)
Q Consensus        35 ~~~~~~lelL~~~~---~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~  104 (291)
                      .+++.+++.+.+.+   ......|||||+|.|.+|..|.+.+  ..++++|+++..++..++....  ..++.+|+.
T Consensus        24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l  100 (322)
T d1i4wa_          24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred             HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchh
Confidence            45667777776532   1125689999999999999999874  5899999999999998876543  677777764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.76  E-value=0.0011  Score=55.67  Aligned_cols=57  Identities=21%  Similarity=0.250  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626           35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      .+.+++++....+    +..|||.-||||..+.+..+.|..++|+|+++...+.|.++...
T Consensus       195 ~L~~~~I~~~s~~----gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         195 AVIERLVRALSHP----GSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHHHSCT----TCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCC----CCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            6788889887543    67999999999999999999999999999999999999988643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.0023  Score=50.70  Aligned_cols=90  Identities=18%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC--------C-CCCCcccEEEE
Q 043626           52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGL--------G-LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~--------~-~~~~~fD~Vis  119 (291)
                      +.+||-+|||. |.+...+++. |. .|+++|.++..++.+++.... .++...- ...        . .....+|+|+-
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~-~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-LTLNRRE-TSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-EEEETTT-SCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccccccccccccce-EEEeccc-cchHHHHHHHHHhhCCCCceEEee
Confidence            68999999985 6666666665 64 899999999999999876432 1221110 110        0 11345899885


Q ss_pred             CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ...-                 ...+....++|++||++++.
T Consensus       107 ~vG~-----------------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         107 ATGD-----------------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             CSSC-----------------TTHHHHHHHHEEEEEEEEEC
T ss_pred             cCCc-----------------hhHHHHHHHHhcCCCEEEEE
Confidence            4211                 13567788999999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.56  E-value=0.0032  Score=49.73  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=67.3

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C-C-CC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L-G-LR  110 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~-~-~~  110 (291)
                      .+++...+.+   +..||=+|||. |.++..+++. | ..|+++|.++.-++.|++.... .++...-...   + . ..
T Consensus        18 ~a~~~a~~~~---g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          18 HGAELADIEM---GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-DILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             HHHHHTTCCT---TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-EEECGGGSCHHHHHHHHTT
T ss_pred             HHHHHhCCCC---CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-ccccccchhHHHHHHHHhh
Confidence            3456666666   67888899997 7888888776 5 4799999999999999875432 2222211010   0 0 11


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ...+|+||-...-                 ...+....++|+|+|++++.
T Consensus        94 g~G~D~vid~~g~-----------------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          94 GKGVDRVIMAGGG-----------------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             TSCEEEEEECSSC-----------------TTHHHHHHHHEEEEEEEEEC
T ss_pred             ccCcceEEEccCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            2359998854221                 13466788999999999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.53  E-value=0.00065  Score=53.11  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----CCCCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL----GLRPG  112 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~~~~~  112 (291)
                      ++++.....+   +.+||=+|||. |.++..+++. |.+++++|.++.-++.+++.... .++..+-.+..    ....+
T Consensus        18 ~al~~~~~~~---g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g   93 (166)
T d1llua2          18 KGLKQTNARP---GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS-LTVNARQEDPVEAIQRDIGG   93 (166)
T ss_dssp             HHHHHHTCCT---TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHHSS
T ss_pred             HHHHHhCCCC---CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc-ccccccchhHHHHHHHhhcC
Confidence            4455666665   67888899986 6666666654 79999999999999999876543 22322211100    01123


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+|.|++...                  ...+....++|++||++++.
T Consensus        94 ~~~~i~~~~~------------------~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          94 AHGVLVTAVS------------------NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EEEEEECCSC------------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             Cccccccccc------------------chHHHHHHHHhcCCcEEEEE
Confidence            3344443221                  13566788999999999873

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0056  Score=47.68  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG  116 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~  116 (291)
                      .+++...+++   +.+||=+|||. |.+...+++. |..++++|.++.-++.+++..... ++...-..........+|+
T Consensus        21 ~al~~~~~~~---G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~-~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          21 SPLRHWQAGP---GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE-VVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             HHHHHTTCCT---TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE-EEETTCHHHHHTTTTCEEE
T ss_pred             HHHHHhCCCC---CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE-EEECchhhHHHHhcCCCce
Confidence            4455666666   78999999975 6666666654 788899999999888887765432 2221110001112357999


Q ss_pred             EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |+-...-.                 ..+.....+|+++|++++.
T Consensus        97 vid~~g~~-----------------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          97 ILNTVAAP-----------------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEECCSSC-----------------CCHHHHHTTEEEEEEEEEC
T ss_pred             eeeeeecc-----------------hhHHHHHHHHhcCCEEEEe
Confidence            88543211                 2345677899999999974

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.30  E-value=0.0088  Score=46.87  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=66.1

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----CCCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL----GLRP  111 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~~~~  111 (291)
                      .+++.+..++   +.+||=+|||. |..+..+++. | ..++.+|.++.-++.+++.... .++..+-.+..    .+.+
T Consensus        19 a~~~~~~~~~---g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~-~~i~~~~~~~~~~i~~~t~   94 (174)
T d1f8fa2          19 ACINALKVTP---ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT-HVINSKTQDPVAAIKEITD   94 (174)
T ss_dssp             HHHTTTCCCT---TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTT
T ss_pred             HHHHhhCCCC---CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe-EEEeCCCcCHHHHHHHHcC
Confidence            3455566665   77999999986 4455555544 6 5788999999999999876432 34433321100    1224


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.||+|+-...-                 ...+....++|+|+|++++.
T Consensus        95 gg~D~vid~~G~-----------------~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          95 GGVNFALESTGS-----------------PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             SCEEEEEECSCC-----------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEEcCCc-----------------HHHHHHHHhcccCceEEEEE
Confidence            679998854221                 24667889999999999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.11  E-value=0.0018  Score=50.37  Aligned_cols=99  Identities=21%  Similarity=0.331  Sum_probs=62.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-----CCC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-----LRP  111 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-----~~~  111 (291)
                      .++......+   +.+||=+|||+ |.....++.. |..++++|.++.-++.+++....  .+...-.+...     ...
T Consensus        18 ~al~~~~~~~---g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~--~~~~~~~~~~~~~~~~~~~   92 (168)
T d1rjwa2          18 KALKVTGAKP---GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD--LVVNPLKEDAAKFMKEKVG   92 (168)
T ss_dssp             HHHHHHTCCT---TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS--EEECTTTSCHHHHHHHHHS
T ss_pred             HHHHHhCCCC---CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc--eecccccchhhhhcccccC
Confidence            3455666666   77899999987 4444555544 68999999999999999885433  22222111110     112


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +.+|.|++. .-                 ...+....++|+|+|++++.
T Consensus        93 ~~~~~v~~~-~~-----------------~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          93 GVHAAVVTA-VS-----------------KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             SEEEEEESS-CC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeec-CC-----------------HHHHHHHHHHhccCCceEec
Confidence            334444432 11                 24577889999999999984

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.08  E-value=0.0086  Score=47.14  Aligned_cols=102  Identities=19%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC------CC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL------GL  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~------~~  109 (291)
                      .+++...+++   +..||=+|||. |.++..+++. | ..|+.+|+++.-++.|++.... .++...-.+..      ..
T Consensus        19 a~~~~a~v~~---G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~   94 (174)
T d1e3ia2          19 AAINTAKVTP---GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-DCLNPRELDKPVQDVITEL   94 (174)
T ss_dssp             HHHTTSCCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHH
T ss_pred             HHHHhhCCCC---CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-cccCCccchhhhhhhHhhh
Confidence            3445555555   78999999998 8888777776 5 5899999999999999886543 22221110100      01


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQI  161 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~~  161 (291)
                      ..+.+|+|+-..-.                 ...+....++|++| |++++.-
T Consensus        95 ~~~G~d~vie~~G~-----------------~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          95 TAGGVDYSLDCAGT-----------------AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             HTSCBSEEEESSCC-----------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             hcCCCcEEEEeccc-----------------chHHHHHHHHhhcCCeEEEecC
Confidence            24568999854221                 25678899999996 9998753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0096  Score=46.49  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             HHhCCCCCCCCCeEEEEcC-C-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC-CC------CCCC
Q 043626           42 ELLALPDDGVPRLLLDIGC-G-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ-GL------GLRP  111 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGc-G-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~-~~------~~~~  111 (291)
                      +...+.+   +.+||-+|+ | .|..+..+++. |.++++++.++..++.+++.... .++  |..+ .+      ....
T Consensus        22 ~~~~~~~---g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~-~vi--~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          22 HSACVKA---GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH-EVF--NHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             TTSCCCT---TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEE--ETTSTTHHHHHHHHHCT
T ss_pred             HHhCCCC---CCEEEEEeccccccccccccccccCcccccccccccccccccccCcc-ccc--ccccccHHHHhhhhhcc
Confidence            4444544   779999997 2 45666666654 78999999999988888875432 222  2211 11      1124


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ..+|+|+....                  ...+....++|+|+|++++
T Consensus        96 ~g~d~v~d~~g------------------~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          96 KGIDIIIEMLA------------------NVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             TCEEEEEESCH------------------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCceEEeeccc------------------HHHHHHHHhccCCCCEEEE
Confidence            56999986422                  1356778899999999987

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.97  E-value=0.013  Score=46.92  Aligned_cols=109  Identities=16%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----C-C
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----G-L  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~-~  109 (291)
                      .+++...+++   +.+||-+|||. |..+..++.. | ..|+++|.++..++.|++....  .+.-.....+     . .
T Consensus        16 ~a~~~a~v~~---G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~--~~~~~~~~~~~~~i~~~t   90 (195)
T d1kola2          16 HGAVTAGVGP---GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE--IADLSLDTPLHEQIAALL   90 (195)
T ss_dssp             HHHHHTTCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHH
T ss_pred             HHHHHhCCCC---CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc--EEEeCCCcCHHHHHHHHh
Confidence            3456667776   78999999998 6666666654 5 5899999999999999887543  2221111111     0 1


Q ss_pred             CCCcccEEEECCchh------hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQ------WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~------~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ....+|+++-....+      +..+.    ..    ....+....++++|||++++.
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~----~~----~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKH----EA----PATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGS----BC----TTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCcEEEEECccccccCCcccceee----cC----cHHHHHHHHHHHhcCCEEEEe
Confidence            234688888542211      11000    00    135788999999999999875

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.23  E-value=0.017  Score=48.16  Aligned_cols=125  Identities=18%  Similarity=0.111  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------------------------------------
Q 043626           32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---------------------------------------   72 (291)
Q Consensus        32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---------------------------------------   72 (291)
                      .-..+..+++.+..-..   +..+||--||||.+....+-.                                       
T Consensus        34 Laa~il~~al~l~~w~~---~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~  110 (249)
T d1o9ga_          34 LATEIFQRALARLPGDG---PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELE  110 (249)
T ss_dssp             HHHHHHHHHHHTSSCCS---CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCC---CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcc
Confidence            44566666665444333   668999999999987655421                                       


Q ss_pred             ---CCeEEEEeCCHHHHHHHHh---cC------CcceEEEccCCCCCCC----CCCcccEEEECCchhhhccccccCCch
Q 043626           73 ---GHQWIGLDISQSMLNIALE---RE------VEGDLLLGDMGQGLGL----RPGVVDGAISISAVQWLCNADKASHEP  136 (291)
Q Consensus        73 ---g~~v~gvDis~~ml~~a~~---~~------~~~~~~~~D~~~~~~~----~~~~fD~Vis~~~l~~l~~~~~~~~~p  136 (291)
                         ...++|.|+++.+++.|..   +.      ..+.+...|+.+..++    .+...++||+|...-.=...+  ...+
T Consensus       111 ~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~--~~~~  188 (249)
T d1o9ga_         111 RREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWE--GQVP  188 (249)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSS--SCCC
T ss_pred             ccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccccccc--ccch
Confidence               0236788898888888742   32      1267778887543331    245679999996554322111  1224


Q ss_pred             HHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          137 RLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       137 ~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .+.+..++..+.+.|.....++++-
T Consensus       189 ~~~~~~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         189 GQPVAGLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHccCCCCcEEEEeC
Confidence            4567889999999997666666653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.13  E-value=0.031  Score=43.08  Aligned_cols=101  Identities=20%  Similarity=0.281  Sum_probs=65.0

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCC--CchhHHHHHH-cC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CC
Q 043626           39 RALELLALPDDGVPRLLLDIGCG--SGLSGETLSE-NG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GL  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcG--sG~~~~~L~~-~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~  109 (291)
                      +++....+.+   +..||=+||+  .|..+..++. .| ..|+++|.++.-++.+++.... .++..+-.+..     -.
T Consensus        18 ~al~~~~~~~---g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~   93 (170)
T d1jvba2          18 RAVRKASLDP---TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRIT   93 (170)
T ss_dssp             HHHHHTTCCT---TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHT
T ss_pred             HHHHHhCCCC---CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHh
Confidence            3455666665   7799999974  3455554444 46 7999999999999999876533 22322211100     01


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .++.||+|+-...-                 ...+....++|+|||++++.
T Consensus        94 ~~~~~d~vid~~g~-----------------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          94 ESKGVDAVIDLNNS-----------------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             TTSCEEEEEESCCC-----------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             hcccchhhhccccc-----------------chHHHhhhhhcccCCEEEEe
Confidence            24569998865322                 24566778999999999874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.13  E-value=0.039  Score=43.03  Aligned_cols=102  Identities=16%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC------CC
Q 043626           39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL------GL  109 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~------~~  109 (291)
                      .+++...+++   +.+||=+|||. |.++..+++. | ..|+++|+++.-++.|++.... .++...-.+..      ..
T Consensus        18 a~~~~a~~~~---G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~-~~i~~~~~d~~~~~~~~~~   93 (174)
T d1p0fa2          18 AAVNTAKVTP---GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-ECLNPKDYDKPIYEVICEK   93 (174)
T ss_dssp             HHHTTTCCCT---TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHH
T ss_pred             HHHHhhCCCC---CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc-EEEcCCCchhHHHHHHHHh
Confidence            3455555665   78999999986 4455555554 6 6899999999999999876433 22221110100      01


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccC-CcEEEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLAR-GARAVFQI  161 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkp-gG~lv~~~  161 (291)
                      ..+-+|.||-....                 ...+......+++ +|.+++.-
T Consensus        94 ~~~G~d~vid~~g~-----------------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          94 TNGGVDYAVECAGR-----------------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             TTSCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cCCCCcEEEEcCCC-----------------chHHHHHHHHHHHhcCceEEEE
Confidence            23468888854222                 1344555655655 68888754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.04  E-value=0.089  Score=40.15  Aligned_cols=86  Identities=21%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             CeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           53 RLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        53 ~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      ++|.=||+|.  +.++..|.+.|++|+++|.++..++.+.+... ++....++ +.    -...|+||..-         
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-~~~~~~~~-~~----~~~~DiIilav---------   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-VDEAGQDL-SL----LQTAKIIFLCT---------   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-CSEEESCG-GG----GTTCSEEEECS---------
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-cceeeeec-cc----ccccccccccC---------
Confidence            3577788875  33566777889999999999999998877543 12222222 21    24678888532         


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                           |......+++++...|+++..++
T Consensus        66 -----p~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          66 -----PIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             -----CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             -----cHhhhhhhhhhhhhhccccccee
Confidence                 23346788999988888887554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.99  E-value=0.025  Score=44.31  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=39.8

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCc
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVE   95 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~   95 (291)
                      +++...+++   +..||=+|||. |.+...+++. | .+|+++|+++.-++.|++....
T Consensus        21 v~~~~~~~~---g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          21 AVKTGKVKP---GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             HHTTSCCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             HHHhhCCCC---CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence            344455555   78999999986 4455555544 6 6899999999999999987654

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.92  E-value=0.23  Score=42.11  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcC--------CcceEEEccCCCCC-------CCCCCccc
Q 043626           52 PRLLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALERE--------VEGDLLLGDMGQGL-------GLRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~--------~~~~~~~~D~~~~~-------~~~~~~fD  115 (291)
                      ...|+.+|||-=.-...|.. .+..|+-||. +.+++.-++..        ....++..|+...+       .|.+...=
T Consensus        90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt  168 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  168 (297)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence            34677799998877777643 3578999996 77776544332        12366777775432       24455566


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES  165 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~  165 (291)
                      ++++-.++.||..         .....+|..+.....||+.+++...+..
T Consensus       169 l~i~EGvl~YL~~---------~~~~~ll~~i~~~~~~GS~l~~d~~~~~  209 (297)
T d2uyoa1         169 AWLAEGLLMYLPA---------TAQDGLFTEIGGLSAVGSRIAVETSPLH  209 (297)
T ss_dssp             EEEECSCGGGSCH---------HHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEEccccccCCH---------HHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            7888889999843         4488999999999999999999876543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.90  E-value=0.098  Score=40.01  Aligned_cols=103  Identities=17%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             eEEEEcCCC-ch-hHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626           54 LLLDIGCGS-GL-SGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA  129 (291)
Q Consensus        54 ~VLDiGcGs-G~-~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~  129 (291)
                      .|+=||||. |. ++..|.+.|  .+|+|+|.++..++.+++... ++....+...   ......|+|+..-        
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-~~~~~~~~~~---~~~~~~dlIila~--------   70 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-IDEGTTSIAK---VEDFSPDFVMLSS--------   70 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-CSEEESCGGG---GGGTCCSEEEECS--------
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-chhhhhhhhh---hhccccccccccC--------
Confidence            578899986 33 455666666  589999999999999987643 2222222211   1123578888542        


Q ss_pred             cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHH
Q 043626          130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGA  175 (291)
Q Consensus       130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~  175 (291)
                            |......++..+...++++..+ +.+......-.+.+...
T Consensus        71 ------p~~~~~~vl~~l~~~~~~~~ii-~d~~s~k~~~~~~~~~~  109 (171)
T d2g5ca2          71 ------PVRTFREIAKKLSYILSEDATV-TDQGSVKGKLVYDLENI  109 (171)
T ss_dssp             ------CHHHHHHHHHHHHHHSCTTCEE-EECCSCCTHHHHHHHHH
T ss_pred             ------Cchhhhhhhhhhhccccccccc-cccccccHHHHHHHHHh
Confidence                  3334678889999999887544 44433333344444433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.81  E-value=0.14  Score=37.57  Aligned_cols=65  Identities=25%  Similarity=0.264  Sum_probs=44.9

Q ss_pred             CeEEEEcCCCchhHHHH----HHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEEC
Q 043626           53 RLLLDIGCGSGLSGETL----SENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISI  120 (291)
Q Consensus        53 ~~VLDiGcGsG~~~~~L----~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~  120 (291)
                      ++|+=+|+  |.+|..+    .+.|+.|+.+|.++..++.+.+.. ...++.+|.....   ...-...|.+++.
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            35777776  4555444    456899999999999998877654 4678889975421   1223568888874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.30  E-value=0.096  Score=40.35  Aligned_cols=90  Identities=18%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----C-CCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL----G-LRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~-~~~~~fD~Vis~~~l  123 (291)
                      +..||-+|||. |.+...++. .| ..++++|.++.-++.+++.... .++..+- +..    . .....+|+|+-...-
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-~~i~~~~-~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-HVVDARR-DPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-EEEETTS-CHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-eeecCcc-cHHHHHHHhhCCCCceEEEEecCc
Confidence            67899999987 455555554 35 6899999999999999876543 2332221 111    0 123458988854322


Q ss_pred             hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                       ...+.....+|++||++++.
T Consensus       111 -----------------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         111 -----------------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             -----------------HHHHHHGGGGEEEEEEEEEC
T ss_pred             -----------------chHHHHHHHHHhCCCEEEEE
Confidence                             24577889999999999974

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.34  E-value=0.13  Score=39.37  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCC-----CCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLG-DMGQGL-----GLR  110 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~-----~~~  110 (291)
                      +.+...+++   +.+||=+|||. |.++..++.. | ..|+++|.++.-++.+++.... .++.. +-.+..     ...
T Consensus        20 l~~~~~~~~---G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-~~i~~~~~~~~~~~~~~~~~   95 (176)
T d2fzwa2          20 AVNTAKLEP---GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-ECINPQDFSKPIQEVLIEMT   95 (176)
T ss_dssp             HHTTTCCCT---TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-EEECGGGCSSCHHHHHHHHT
T ss_pred             HHHhhCCCC---CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-EEEeCCchhhHHHHHHHHHc
Confidence            445556665   78999999983 3344444443 6 6899999999999998876543 22221 110100     012


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                      .+.+|+|+-...-                 ..++..+..++++||.+++..
T Consensus        96 ~~g~D~vid~~G~-----------------~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          96 DGGVDYSFECIGN-----------------VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             TSCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCcEeeecCCC-----------------HHHHHHHHHhhcCCceeEEEE
Confidence            3568999965221                 256778889999998777643

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.27  E-value=0.21  Score=43.48  Aligned_cols=79  Identities=10%  Similarity=-0.008  Sum_probs=49.6

Q ss_pred             HHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------CCeEEEEeCCHHHHHHHHhcCCcce-E-EEccCCCCCCCC
Q 043626           42 ELLALPDDGVPRLLLDIGCGSGLSGETLSEN---------GHQWIGLDISQSMLNIALEREVEGD-L-LLGDMGQGLGLR  110 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---------g~~v~gvDis~~ml~~a~~~~~~~~-~-~~~D~~~~~~~~  110 (291)
                      +.+..+.   ...|||+|+|+|.+..-+...         ...++.+++|+.+...-+++..... + ...++ +.++  
T Consensus        73 ~~~~~~~---~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~-~~~~--  146 (365)
T d1zkda1          73 KAADEPQ---TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSF-EDVP--  146 (365)
T ss_dssp             HHTTCCS---SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSG-GGSC--
T ss_pred             HHhCCCc---cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceeccCh-hhcc--
Confidence            3344444   568999999999988766542         2568999999998777776655431 1 22333 2222  


Q ss_pred             CCcccEEEECCchhhhc
Q 043626          111 PGVVDGAISISAVQWLC  127 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~  127 (291)
                       ...-+|+||-.+..++
T Consensus       147 -~~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         147 -EGPAVILANEYFDVLP  162 (365)
T ss_dssp             -CSSEEEEEESSGGGSC
T ss_pred             -cCCeEEEecccCcccc
Confidence             1224677776665554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.04  E-value=0.012  Score=45.92  Aligned_cols=99  Identities=16%  Similarity=0.154  Sum_probs=61.1

Q ss_pred             HHHHHhCCCCCCCCCeEEEEcC-CC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCccc
Q 043626           39 RALELLALPDDGVPRLLLDIGC-GS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVD  115 (291)
Q Consensus        39 ~~lelL~~~~~~~~~~VLDiGc-Gs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD  115 (291)
                      .+++...+++   +.+||=.|. |. |.....+++. |.++++++.++.-++.+++...+.-+-..+..... .....+|
T Consensus        18 ~al~~~~~~~---g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~-~~~~g~D   93 (171)
T d1iz0a2          18 LALKRAQARP---GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERA-KAWGGLD   93 (171)
T ss_dssp             HHHHHTTCCT---TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHH-HHTTSEE
T ss_pred             HHHHHhCCCC---CCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhh-hcccccc
Confidence            3455556665   778998885 33 5566666655 78999999999888888775443211111110001 1134689


Q ss_pred             EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+-..-                   ..+....++|+|+|++++.
T Consensus        94 ~v~d~~G-------------------~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          94 LVLEVRG-------------------KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEECSC-------------------TTHHHHHTTEEEEEEEEEC
T ss_pred             ccccccc-------------------hhHHHHHHHHhcCCcEEEE
Confidence            9885311                   1245677899999998863

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.68  E-value=0.22  Score=38.50  Aligned_cols=99  Identities=10%  Similarity=0.061  Sum_probs=64.9

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCc--hhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSG--LSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRP  111 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG--~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~  111 (291)
                      +.+...+++   +.+||=.|++.|  .....|++. |.++++++.+++.++.+++...... +..+-....     ....
T Consensus        21 l~~~~~v~~---G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~~~~~~~~   96 (182)
T d1v3va2          21 LLEVCGVKG---GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASP   96 (182)
T ss_dssp             HHTTTCCCS---SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCT
T ss_pred             HHHHhCCCC---CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhh-cccccccHHHHHHHHhhc
Confidence            334555665   789998887654  455566655 7999999999999988887754422 222211110     1124


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      ..+|+|+-...                  ...+..+.++|+++|.+++.
T Consensus        97 ~Gvd~v~D~vG------------------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          97 DGYDCYFDNVG------------------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             TCEEEEEESSC------------------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCceeEEecC------------------chhhhhhhhhccCCCeEEee
Confidence            56999885321                  14677899999999998863

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.59  E-value=0.041  Score=44.82  Aligned_cols=83  Identities=12%  Similarity=-0.012  Sum_probs=51.6

Q ss_pred             eEEEccCCCCC-CCCCCcccEEEECCchhhhccccccCCchHHH----HHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626           97 DLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNADKASHEPRLR----LKAFFGSLYRCLARGARAVFQIYPESVAQREL  171 (291)
Q Consensus        97 ~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~----l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~  171 (291)
                      .++++|..+.+ .++++++|+|+..... .+...+-........    +..++.+++++|+|||.+++..   .+.....
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY-~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~---~~~~~~~   81 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPY-NLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN---TPFNCAF   81 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCC-SSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE---CHHHHHH
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCC-CCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc---Cchhhhh
Confidence            45666654322 2457889998876432 111111111112222    4567889999999999988766   4456667


Q ss_pred             HHHHHHHcCCCC
Q 043626          172 ILGAAMRAGFAG  183 (291)
Q Consensus       172 i~~~~~~aGF~~  183 (291)
                      +...+...||.-
T Consensus        82 ~~~~~~~~g~~~   93 (256)
T d1g60a_          82 ICQYLVSKGMIF   93 (256)
T ss_dssp             HHHHHHHTTCEE
T ss_pred             hhhhhhccccee
Confidence            788889999975

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.46  E-value=0.17  Score=38.90  Aligned_cols=95  Identities=17%  Similarity=0.033  Sum_probs=60.4

Q ss_pred             HHhCCCCCCCCCeEEEEcC-C-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC------CCCCC
Q 043626           42 ELLALPDDGVPRLLLDIGC-G-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL------GLRPG  112 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGc-G-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~------~~~~~  112 (291)
                      +...+.+   +.+||=.|. | .|..+..++.. |..+++++-+++-++.+++.... .++...- ..+      -....
T Consensus        19 ~~~~~~~---g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~-~vi~~~~-~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          19 EVGRLSP---GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE-YVGDSRS-VDFADEILELTDGY   93 (183)
T ss_dssp             TTSCCCT---TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS-EEEETTC-STHHHHHHHHTTTC
T ss_pred             HHhCCCC---CCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc-ccccCCc-cCHHHHHHHHhCCC
Confidence            4444554   678998873 2 35555556654 78999999899888988876543 2222111 111      01245


Q ss_pred             cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .||+|+..-.-                  ..+..+.++|+++|+++.
T Consensus        94 g~d~v~d~~g~------------------~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          94 GVDVVLNSLAG------------------EAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             CEEEEEECCCT------------------HHHHHHHHTEEEEEEEEE
T ss_pred             CEEEEEecccc------------------hHHHHHHHHhcCCCEEEE
Confidence            79999964221                  345677899999999886

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.26  E-value=0.32  Score=37.26  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCch-hHHHHHH-cC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGL-SGETLSE-NG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRP  111 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~-~~~~L~~-~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~  111 (291)
                      +++...+++   +.+||=+|||.+. +...++. .| ..|+++|.++.-++.+++......+...+..+..     ....
T Consensus        20 l~~~~~vk~---GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (176)
T d2jhfa2          20 AVKVAKVTQ---GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN   96 (176)
T ss_dssp             HHTTTCCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHhhCCCC---CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhc
Confidence            345555665   7899999997543 3333333 35 7999999999999999887644222222221111     0124


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ  160 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~  160 (291)
                      +.+|+||-.....                 ..+.....+++++ |.+++.
T Consensus        97 ~G~D~vid~~G~~-----------------~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          97 GGVDFSFEVIGRL-----------------DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SCBSEEEECSCCH-----------------HHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCEEEecCCch-----------------hHHHHHHHHHhcCCcceEEe
Confidence            5789988654432                 3455667778776 555553

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.86  E-value=0.14  Score=40.02  Aligned_cols=91  Identities=11%  Similarity=0.006  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCCc--hhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEcc-CCCC-CCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGSG--LSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGD-MGQG-LGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGsG--~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D-~~~~-~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +.+||=.|++.|  .....|++. |.+|+++-.|+..++.+++......+-..+ ..+. .....+.+|+|+-.-.-   
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg---  108 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG---  108 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT---
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc---
Confidence            678998886554  456666654 899999999999888888765442111111 0011 12235689988854211   


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                     ..+....++|++||+++..
T Consensus       109 ---------------~~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2         109 ---------------RTLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             ---------------TTHHHHHHTEEEEEEEEEC
T ss_pred             ---------------hhHHHHHHHhCCCceEEEe
Confidence                           3467789999999999974

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.70  E-value=0.025  Score=44.20  Aligned_cols=95  Identities=19%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCc-ceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626           52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVE-GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN  128 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~-~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~  128 (291)
                      +.+||=||+|. |......+. .|..|+.+|.++..++........ +++...+- +.+...-...|+||..-.+.   .
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~aDivI~aalip---G  107 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNS-AEIETAVAEADLLIGAVLVP---G  107 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCH-HHHHHHHHTCSEEEECCCCT---T
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhh-hhHHHhhccCcEEEEeeecC---C
Confidence            68999999997 555555554 489999999999999887765443 33333321 11111123679999753321   1


Q ss_pred             ccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626          129 ADKASHEPRLRLKAFFGSLYRCLARGARAV  158 (291)
Q Consensus       129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv  158 (291)
                      ..    .    +.-+-+++.+.+|||..++
T Consensus       108 ~~----a----P~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         108 RR----A----PILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             SS----C----CCCBCHHHHTTSCTTCEEE
T ss_pred             cc----c----CeeecHHHHhhcCCCcEEE
Confidence            10    0    1123446788899998766

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.23  Score=38.02  Aligned_cols=97  Identities=14%  Similarity=0.058  Sum_probs=62.6

Q ss_pred             HHhCCCCCCCCCeEEEEcCCC--chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CCCCc
Q 043626           42 ELLALPDDGVPRLLLDIGCGS--GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LRPGV  113 (291)
Q Consensus        42 elL~~~~~~~~~~VLDiGcGs--G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~~~~  113 (291)
                      +...+++   +.+||=.|+|+  |.....+++. |.++++++.|+.-++.+++.... .++...-.+   .+ . .....
T Consensus        22 ~~~~l~~---g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~-~vi~~~~~d~~~~v~~~t~g~g   97 (179)
T d1qora2          22 KTYEIKP---DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-QVINYREEDLVERLKEITGGKK   97 (179)
T ss_dssp             TTSCCCT---TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTCC
T ss_pred             HHhCCCC---CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe-EEEECCCCCHHHHHHHHhCCCC
Confidence            3334554   67999987765  5566666665 79999999999999998876533 233221111   00 0 12457


Q ss_pred             ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      +|+|+....-                  ..+.....+|+++|++++.
T Consensus        98 ~d~v~d~~g~------------------~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          98 VRVVYDSVGR------------------DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             EEEEEECSCG------------------GGHHHHHHTEEEEEEEEEC
T ss_pred             eEEEEeCccH------------------HHHHHHHHHHhcCCeeeec
Confidence            8988864322                  2356788999999998764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.32  Score=39.61  Aligned_cols=74  Identities=22%  Similarity=0.212  Sum_probs=57.2

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l  123 (291)
                      +..+|=.|+++|.   ....|++.|++|+.+|.++..++.+.+....+..+..|+.+.-     --.-+..|++|.+..+
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg~   86 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAV   86 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecccc
Confidence            6689999988874   5567778899999999999999888887777888899986521     0123689999988665


Q ss_pred             hh
Q 043626          124 QW  125 (291)
Q Consensus       124 ~~  125 (291)
                      .+
T Consensus        87 ~~   88 (244)
T d1pr9a_          87 AL   88 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.75  E-value=0.096  Score=41.32  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             CCeEEEEcCCC-chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCC
Q 043626           52 PRLLLDIGCGS-GLSGETLS-ENGHQWIGLDISQSMLNIALEREV   94 (291)
Q Consensus        52 ~~~VLDiGcGs-G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~   94 (291)
                      +..||=||+|. |......+ ..|..|+.+|+++..++.......
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            67999999997 55555444 358999999999999888887653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.44  Score=39.01  Aligned_cols=74  Identities=16%  Similarity=0.110  Sum_probs=52.1

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC---------CCCCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG---------LRPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~---------~~~~~  113 (291)
                      +..+|=.|+++|.   +...|++.|..|+.+|.++..++.+.+..      ..+.++.+|+...-.         -..+.
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5689999988875   55666778999999999998877765432      135677899865210         11367


Q ss_pred             ccEEEECCchhh
Q 043626          114 VDGAISISAVQW  125 (291)
Q Consensus       114 fD~Vis~~~l~~  125 (291)
                      .|++|.+....+
T Consensus        90 iD~lVnnAg~~~  101 (257)
T d1xg5a_          90 VDICINNAGLAR  101 (257)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEecccccC
Confidence            899998765543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.41  E-value=0.12  Score=42.41  Aligned_cols=85  Identities=14%  Similarity=-0.059  Sum_probs=51.6

Q ss_pred             EEEccCCCCC-CCCCCcccEEEECCchhhhccccccC-CchHHHHHHHHHHHHHhccCCcEEEEEEcCC------ChHHH
Q 043626           98 LLLGDMGQGL-GLRPGVVDGAISISAVQWLCNADKAS-HEPRLRLKAFFGSLYRCLARGARAVFQIYPE------SVAQR  169 (291)
Q Consensus        98 ~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~~~~~-~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~------~~~~~  169 (291)
                      ++++|..+.+ .++++++|+|+...... +...+... .+-..-+..++.+++++|+|+|.+++.....      .....
T Consensus         7 ~~~~D~le~l~~l~d~SIDliitDPPYn-~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~   85 (279)
T d1eg2a_           7 YDVCDCLDTLAKLPDDSVQLIICDPPYN-IMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI   85 (279)
T ss_dssp             EEECCHHHHHHTSCTTCEEEEEECCCSB-CCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred             EEechHHHHHhhCcCCCccEEEECCCCC-CCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence            5556653322 35578999999875431 11111111 1222335778899999999999999864321      12345


Q ss_pred             HHHHHHHHHcCCCC
Q 043626          170 ELILGAAMRAGFAG  183 (291)
Q Consensus       170 ~~i~~~~~~aGF~~  183 (291)
                      ..+...+...||..
T Consensus        86 ~~~~~~~~~~~~~~   99 (279)
T d1eg2a_          86 SIISHMRQNSKMLL   99 (279)
T ss_dssp             HHHHHHHHHCCCEE
T ss_pred             hHHHHHHhccCcee
Confidence            56677778889875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.99  E-value=0.64  Score=35.20  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CeEEEEcCCCch--hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc------ce------EEEccCCCCCCCCCCcccEEE
Q 043626           53 RLLLDIGCGSGL--SGETLSENGHQWIGLDISQSMLNIALEREVE------GD------LLLGDMGQGLGLRPGVVDGAI  118 (291)
Q Consensus        53 ~~VLDiGcGsG~--~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~------~~------~~~~D~~~~~~~~~~~fD~Vi  118 (291)
                      .+|-=||+|...  ++..|++.|+.|+++|.++.-++........      ..      .+..|+.+.    -...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH----hcCCCEEE
Confidence            367778988743  5566778899999999999888877654321      11      111111000    13578888


Q ss_pred             ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .. +-.+             ....++..+...|+++..+++
T Consensus        78 i~-v~~~-------------~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IV-VPAI-------------HHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             EC-SCGG-------------GHHHHHHHHGGGCCTTCEEEE
T ss_pred             EE-Echh-------------HHHHHHHHhhhccCCCCEEEE
Confidence            53 1111             156888999999999987664

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.031  Score=42.52  Aligned_cols=95  Identities=16%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             CeEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           53 RLLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        53 ~~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      ++|+=||+|. | .++..|++.|+.|+.++.++...........+.......+....+...+.+|+|+..---+.     
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~-----   75 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ-----   75 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG-----
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc-----
Confidence            4788899987 3 36677778899999999866311110000011110000000001111246888886422211     


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQI  161 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~  161 (291)
                               +..+++.+...+.++..++...
T Consensus        76 ---------~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          76 ---------VSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             ---------HHHHHHHHHTTSCTTSCEEEEC
T ss_pred             ---------hHHHHHhhccccCcccEEeecc
Confidence                     5678889999999888777643

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=89.43  E-value=0.71  Score=35.32  Aligned_cols=122  Identities=13%  Similarity=0.030  Sum_probs=70.4

Q ss_pred             eEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcce-EEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626           54 LLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALEREVEGD-LLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD  130 (291)
Q Consensus        54 ~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~-~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~  130 (291)
                      .|-=||+|.-  .+...|++.|+.|++.|.+++.++...+...... .........+.......|.++..-.        
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~--------   75 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK--------   75 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC--------
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecC--------
Confidence            4555777652  2556666779999999999998887766543211 1111000000000123466664311        


Q ss_pred             ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626          131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS  192 (291)
Q Consensus       131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~  192 (291)
                           +......++..+...|++|- +++.+....+.....+.+.+.+.|.   .+++-|-+
T Consensus        76 -----~~~~v~~v~~~l~~~~~~g~-iiid~sT~~~~~~~~~~~~~~~~g~---~~ldapvs  128 (176)
T d2pgda2          76 -----AGQAVDNFIEKLVPLLDIGD-IIIDGGNSEYRDTMRRCRDLKDKGI---LFVGSGVS  128 (176)
T ss_dssp             -----TTHHHHHHHHHHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHHTTC---EEEEEEEE
T ss_pred             -----chHHHHHHHHHHHhccccCc-EEEecCcchhHHHHHHHHHHHhcCC---ceeccccc
Confidence                 11225667888889998876 4555555566777777777777765   45565544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=1.3  Score=33.96  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             CCeEEEEcCC--CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCCCCCCCcccEEEECCchhhhc
Q 043626           52 PRLLLDIGCG--SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLG-DMGQGLGLRPGVVDGAISISAVQWLC  127 (291)
Q Consensus        52 ~~~VLDiGcG--sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~~~~~~~fD~Vis~~~l~~l~  127 (291)
                      +..||=.|..  .|..+..|++. |.+++++.-++...+.+++.... .++.. +....-.+....+|.|+-. +.    
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad-~vi~~~~~~~~~~l~~~~~~~vvD~-Vg----  105 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS-RVLPRDEFAESRPLEKQVWAGAIDT-VG----  105 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE-EEEEGGGSSSCCSSCCCCEEEEEES-SC----
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc-cccccccHHHHHHHHhhcCCeeEEE-cc----
Confidence            4578766532  23455555554 89999999999988888765433 22222 2111123345678887632 21    


Q ss_pred             cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                   ...+.....+|+++|+++..
T Consensus       106 -------------g~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2         106 -------------DKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             -------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             -------------hHHHHHHHHHhccccceEee
Confidence                         24678899999999999974

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.99  E-value=0.67  Score=35.12  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=59.0

Q ss_pred             HHHHhCCCCCCCCCeEEEEcCCCch-hHHHHHH-cC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC------CCC
Q 043626           40 ALELLALPDDGVPRLLLDIGCGSGL-SGETLSE-NG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL------GLR  110 (291)
Q Consensus        40 ~lelL~~~~~~~~~~VLDiGcGsG~-~~~~L~~-~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~------~~~  110 (291)
                      +.+...+++   +.+||=+|||.+. +...++. .+ ..|+++|.++.-++.+++.... .++...-....      ...
T Consensus        20 ~~~~a~~k~---g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd-~~in~~~~~~~~~~~~~~~~   95 (175)
T d1cdoa2          20 AVNTAKVEP---GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT-DFVNPNDHSEPISQVLSKMT   95 (175)
T ss_dssp             HHTTTCCCT---TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC-EEECGGGCSSCHHHHHHHHH
T ss_pred             HHHhhCCCC---CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc-EEEcCCCcchhHHHHHHhhc
Confidence            345556665   7899999999854 3333333 34 6899999999999999886533 23321110111      011


Q ss_pred             CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      .+-+|+|+-...-                 ...+.....++++||..++
T Consensus        96 ~~G~d~vid~~G~-----------------~~~~~~a~~~~~~g~~~~~  127 (175)
T d1cdoa2          96 NGGVDFSLECVGN-----------------VGVMRNALESCLKGWGVSV  127 (175)
T ss_dssp             TSCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEE
T ss_pred             cCCcceeeeecCC-----------------HHHHHHHHHHhhCCCccee
Confidence            3468888855332                 2445667777777654443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.98  E-value=0.66  Score=37.55  Aligned_cols=74  Identities=19%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCch
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAV  123 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l  123 (291)
                      +..+|=-|+++|.   ....|++.|..|+.+|.+++.++.+.+....+..+..|+.+.-     --.-+..|++|.+..+
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg~   84 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAAL   84 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCcc
Confidence            5688988988774   4566677899999999999988888777777888999986421     0113689999988655


Q ss_pred             hh
Q 043626          124 QW  125 (291)
Q Consensus       124 ~~  125 (291)
                      .+
T Consensus        85 ~~   86 (242)
T d1cyda_          85 VI   86 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.73  E-value=0.96  Score=33.96  Aligned_cols=116  Identities=16%  Similarity=0.097  Sum_probs=70.0

Q ss_pred             eEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626           54 LLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK  131 (291)
Q Consensus        54 ~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~  131 (291)
                      +|-=||+|.=  .++..|++.|+.|++.|.++..++.+.+....   ...+..+    .....|+|++.-     ++   
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~e----~~~~~d~ii~~v-----~~---   66 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAE---TASTAKA----IAEQCDVIITML-----PN---   66 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE---ECSSHHH----HHHHCSEEEECC-----SS---
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhh---hcccHHH----HHhCCCeEEEEc-----CC---
Confidence            4555787762  24556677899999999999988887765322   1111101    123468887641     11   


Q ss_pred             cCCchHHHHHHHH---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCC
Q 043626          132 ASHEPRLRLKAFF---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSS  193 (291)
Q Consensus       132 ~~~~p~~~l~~~l---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~  193 (291)
                          + .....++   ..+...+++| .+++......+.....+.+.+...|+   .+++-|-+.
T Consensus        67 ----~-~~v~~v~~~~~~~~~~~~~g-~iiid~sT~~p~~~~~~~~~~~~~g~---~~vdapv~g  122 (161)
T d1vpda2          67 ----S-PHVKEVALGENGIIEGAKPG-TVLIDMSSIAPLASREISDALKAKGV---EMLDAPVSG  122 (161)
T ss_dssp             ----H-HHHHHHHHSTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHTTTC---EEEECCEES
T ss_pred             ----H-HHHHHHHhCCcchhhccCCC-CEEEECCCCCHHHHHHHHHHHHHcCC---ceecccccC
Confidence                1 1144444   3467777776 45555555666777777777777654   566666553

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.46  E-value=1.5  Score=31.41  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=39.7

Q ss_pred             EEEEcCCCchhHHHHH----HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC---CCCcccEEEEC
Q 043626           55 LLDIGCGSGLSGETLS----ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL---RPGVVDGAISI  120 (291)
Q Consensus        55 VLDiGcGsG~~~~~L~----~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~---~~~~fD~Vis~  120 (291)
                      ++=+|+  |.+|..++    +.|+.|+.+|.++..++.+....  ...+.+|..+.-.+   .-...|.|++.
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC--CcceeeecccchhhhccCCccccEEEEE
Confidence            344455  55555444    56899999999999998886544  35677887543211   12457877654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.29  E-value=0.63  Score=35.59  Aligned_cols=91  Identities=12%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCC--chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC--CCCCCCCcccEEEECCchhhh
Q 043626           52 PRLLLDIGCGS--GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ--GLGLRPGVVDGAISISAVQWL  126 (291)
Q Consensus        52 ~~~VLDiGcGs--G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~~~~~~~~fD~Vis~~~l~~l  126 (291)
                      +..||=-|++.  |.....|++. |.+|+++.-|++..+.+++.....-+...|...  ......+.+|+|+-.-.    
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg----   99 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG----   99 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC----
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc----
Confidence            44688766433  4566666665 899999999988888887766543222122111  11233567999874311    


Q ss_pred             ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626          127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~  160 (291)
                                    -..+....++|+++|++++.
T Consensus       100 --------------g~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2         100 --------------GKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             --------------THHHHHHHTTEEEEEEEEEC
T ss_pred             --------------HHHHHHHHHHhccCceEEEe
Confidence                          14677899999999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.55  Score=38.26  Aligned_cols=74  Identities=15%  Similarity=0.055  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC---------CCCCc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG---------LRPGV  113 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~---------~~~~~  113 (291)
                      +..+|=-|+++|.   ....|++.|.+|+.+|.+++.++.+.....      .+.++.+|+.+.-.         -.-+.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            5678888887775   456666789999999999988776654331      35678889865211         11267


Q ss_pred             ccEEEECCchhh
Q 043626          114 VDGAISISAVQW  125 (291)
Q Consensus       114 fD~Vis~~~l~~  125 (291)
                      .|++|.+..+..
T Consensus        83 iDilVnnAg~~~   94 (254)
T d2gdza1          83 LDILVNNAGVNN   94 (254)
T ss_dssp             CCEEEECCCCCC
T ss_pred             cCeecccccccc
Confidence            999998866544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.61  E-value=2.9  Score=32.08  Aligned_cols=90  Identities=13%  Similarity=0.037  Sum_probs=54.7

Q ss_pred             CeEEEEcCCCch--hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-------------------c-eEEE-ccCCCCCCC
Q 043626           53 RLLLDIGCGSGL--SGETLSENGHQWIGLDISQSMLNIALEREVE-------------------G-DLLL-GDMGQGLGL  109 (291)
Q Consensus        53 ~~VLDiGcGsG~--~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-------------------~-~~~~-~D~~~~~~~  109 (291)
                      .+|-=||+|+=.  ++..++..|+.|+.+|+++..++.+..+...                   . .+.. .+. ..   
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---   80 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GD---   80 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TT---
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-cc---
Confidence            367788987732  3345667799999999999998877654211                   0 1211 121 11   


Q ss_pred             CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                       -...|+|+= .+.+-+           ..-..+|..+-..+.++-.+.-
T Consensus        81 -~~~adlViE-av~E~l-----------~~K~~lf~~l~~~~~~~~IiaS  117 (186)
T d1wdka3          81 -FGNVDLVVE-AVVENP-----------KVKQAVLAEVENHVREDAILAS  117 (186)
T ss_dssp             -GGGCSEEEE-CCCSCH-----------HHHHHHHHHHHTTSCTTCEEEE
T ss_pred             -ccccceeee-eecchH-----------HHHHHHHHHHHhhcCCCeeEEe
Confidence             234577773 222222           2246788888888888876665

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.47  E-value=1.2  Score=36.17  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCC---------CCCCccc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLG---------LRPGVVD  115 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~---------~~~~~fD  115 (291)
                      +..+|=.|+++|.   ....|++.|..|+.+|.++..++.+.+..    .++.++.+|+.+.-.         -.-+..|
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD   89 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVD   89 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCce
Confidence            5578888877763   34555667899999999998887665433    346788899865210         1136899


Q ss_pred             EEEECCchhh
Q 043626          116 GAISISAVQW  125 (291)
Q Consensus       116 ~Vis~~~l~~  125 (291)
                      ++|.+....+
T Consensus        90 ilvnnag~~~   99 (251)
T d2c07a1          90 ILVNNAGITR   99 (251)
T ss_dssp             EEEECCCCCC
T ss_pred             eeeecccccc
Confidence            9998765543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.35  E-value=1  Score=36.60  Aligned_cols=74  Identities=15%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC---------CCCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG---------LRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~---------~~~~~fD~Vi  118 (291)
                      +..+|=-|+++|.   ....|++.|..|+.+|.++..++.+.+.. ....++.+|+.+.-.         -.-+..|++|
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilV   85 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLV   85 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeEE
Confidence            5678877877663   45666678999999999998887666544 345677788854211         1126789999


Q ss_pred             ECCchhh
Q 043626          119 SISAVQW  125 (291)
Q Consensus       119 s~~~l~~  125 (291)
                      .+....+
T Consensus        86 nnAG~~~   92 (253)
T d1hxha_          86 NNAGILL   92 (253)
T ss_dssp             ECCCCCC
T ss_pred             ecccccC
Confidence            8876543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.22  E-value=0.46  Score=33.01  Aligned_cols=67  Identities=24%  Similarity=0.339  Sum_probs=43.0

Q ss_pred             CCeEEEEc-CCCchhH--HHHHHcCCeEEEEeCCH-HHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           52 PRLLLDIG-CGSGLSG--ETLSENGHQWIGLDISQ-SMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        52 ~~~VLDiG-cGsG~~~--~~L~~~g~~v~gvDis~-~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      ..+|.=|| ||+|.++  ..|.++|+.|.|.|... ...+...+.  .+.+..+.....+    ...|+||..+++.
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~--Gi~v~~g~~~~~i----~~~d~vV~S~AI~   78 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQA--GAKIYIGHAEEHI----EGASVVVVSSAIK   78 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHT--TCEEEESCCGGGG----TTCSEEEECTTSC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHC--CCeEEECCccccC----CCCCEEEECCCcC
Confidence            45777787 6778654  67778899999999853 233333333  3455555443322    3579999887764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.20  E-value=2.3  Score=34.04  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-cceEEEccCCCCCCC---------CCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREV-EGDLLLGDMGQGLGL---------RPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-~~~~~~~D~~~~~~~---------~~~~fD~Vi  118 (291)
                      +..+|=.|++.|.   ....|++.|..|+.++.+...++...+... ++.++.+|+.+.-..         .-+..|++|
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiLi   84 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVA   84 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEec
Confidence            5688888988775   556667789999999999998877766543 466788898542110         126799999


Q ss_pred             ECCchhhhccccccCCchHHHH-----------HHHHHHHHHhccCCcEEEEE
Q 043626          119 SISAVQWLCNADKASHEPRLRL-----------KAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       119 s~~~l~~l~~~~~~~~~p~~~l-----------~~~l~~l~~~LkpgG~lv~~  160 (291)
                      .+....+....   ...+...+           ..+.+.+...++.++.+++.
T Consensus        85 nnAg~~~~~~~---~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~  134 (241)
T d2a4ka1          85 HFAGVAHSALS---WNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT  134 (241)
T ss_dssp             EGGGGTTTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cccccccccch---hhhhccccccccccccccccccccccccccccccceeec
Confidence            88766543221   11122222           33345556677777776654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.17  E-value=1.4  Score=35.47  Aligned_cols=73  Identities=21%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC---------CCCCcccEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG---------LRPGVVDGAI  118 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~---------~~~~~fD~Vi  118 (291)
                      +..+|=-|+++|.   ....|++.|..|+.+|.+++.++.+.+.. ..+..+.+|+.+.-.         -.-+..|++|
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   83 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILV   83 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcceeh
Confidence            5577777877764   45666678999999999998887665543 346778889865210         1136899999


Q ss_pred             ECCchh
Q 043626          119 SISAVQ  124 (291)
Q Consensus       119 s~~~l~  124 (291)
                      .+....
T Consensus        84 nnAg~~   89 (243)
T d1q7ba_          84 NNAGIT   89 (243)
T ss_dssp             ECCCCC
T ss_pred             hhhhhc
Confidence            875544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.77  E-value=1.2  Score=36.17  Aligned_cols=73  Identities=16%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---------CCCCcccEEEE
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---------LRPGVVDGAIS  119 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---------~~~~~fD~Vis  119 (291)
                      +..+|=-|+++|.   ....|++.|..|+.+|.+++.++.+.+......++.+|+.+.-.         -.-+..|++|.
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVn   85 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVN   85 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEEe
Confidence            6688888988774   45666778999999999999999888887788889999865211         11267899998


Q ss_pred             CCchh
Q 043626          120 ISAVQ  124 (291)
Q Consensus       120 ~~~l~  124 (291)
                      +....
T Consensus        86 nAG~~   90 (250)
T d1ydea1          86 NAGHH   90 (250)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            86644

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.99  E-value=2  Score=34.91  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCC-HHHHHHHH----hcCCcceEEEccCCCCC---------CCCCCcc
Q 043626           52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDIS-QSMLNIAL----EREVEGDLLLGDMGQGL---------GLRPGVV  114 (291)
Q Consensus        52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis-~~ml~~a~----~~~~~~~~~~~D~~~~~---------~~~~~~f  114 (291)
                      +..+|=-|+++|.   +...|++.|..|+.+|.+ ++.++.+.    +....+.++.+|+.+.-         .-..+..
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   97 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKL   97 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            5688888888775   556777889999999987 44444332    33445778888986521         0113678


Q ss_pred             cEEEECCchhhhccccccCCchHHH--------HHHHHHHHHHhccCCcEEEEE
Q 043626          115 DGAISISAVQWLCNADKASHEPRLR--------LKAFFGSLYRCLARGARAVFQ  160 (291)
Q Consensus       115 D~Vis~~~l~~l~~~~~~~~~p~~~--------l~~~l~~l~~~LkpgG~lv~~  160 (291)
                      |++|.+..............+.-..        ...+.+.+...|+.+|..++.
T Consensus        98 dilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i  151 (272)
T d1g0oa_          98 DIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  151 (272)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence            9999876554332211111111111        133456677778888877764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.71  E-value=0.86  Score=35.68  Aligned_cols=40  Identities=28%  Similarity=0.452  Sum_probs=30.5

Q ss_pred             CeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626           53 RLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALER   92 (291)
Q Consensus        53 ~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~   92 (291)
                      ++|.=||+|- |. ++..|++.|++|+|+|+++.-++.....
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g   42 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQG   42 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhccc
Confidence            3566788885 44 5566778899999999999988776543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.61  E-value=3.9  Score=31.08  Aligned_cols=99  Identities=10%  Similarity=0.045  Sum_probs=58.6

Q ss_pred             HHHhCCCCCCCCCeEEEEcC--CCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCC
Q 043626           41 LELLALPDDGVPRLLLDIGC--GSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRP  111 (291)
Q Consensus        41 lelL~~~~~~~~~~VLDiGc--GsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~  111 (291)
                      .+...+++. ....||=.|+  |.|..+..+++. | ..++++..+++....+......-.++...- +.+     ...+
T Consensus        21 ~~~~~~~~G-~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~-~~~~~~~~~~~~   98 (187)
T d1vj1a2          21 QEKGHISAG-SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKT-GNVAEQLREACP   98 (187)
T ss_dssp             HHHSCCCTT-SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTS-SCHHHHHHHHCT
T ss_pred             HHHhCCCCC-CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccc-hhHHHHHHHHhc
Confidence            344455541 1368998873  458888888885 6 567777777665554433322222332221 111     0123


Q ss_pred             CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      ..+|+|+-...                  ...+....++|+++|+++.
T Consensus        99 ~GvDvv~D~vG------------------g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          99 GGVDVYFDNVG------------------GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             TCEEEEEESSC------------------HHHHHHHHTTEEEEEEEEE
T ss_pred             cCceEEEecCC------------------chhHHHHhhhccccccEEE
Confidence            56999984321                  1457788999999999986

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.44  E-value=11  Score=31.48  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhc-------------------------CCcceEEEccCC
Q 043626           52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALER-------------------------EVEGDLLLGDMG  104 (291)
Q Consensus        52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~-------------------------~~~~~~~~~D~~  104 (291)
                      ...|+-+|||.=.....|.+.  +..|+=||....+-...+..                         .....++.+|+.
T Consensus        97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~  176 (328)
T d1rjda_          97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  176 (328)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCCC
Confidence            568999999998877777654  35677778744332222110                         011355667764


Q ss_pred             CC--------CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626          105 QG--------LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF  159 (291)
Q Consensus       105 ~~--------~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~  159 (291)
                      +.        ..+.....=++|+=.++.++..         .....+++.+.+....+..++.
T Consensus       177 d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~---------~~~~~li~~~~~~f~~~~~i~Y  230 (328)
T d1rjda_         177 DITETTRLLDVCTKREIPTIVISECLLCYMHN---------NESQLLINTIMSKFSHGLWISY  230 (328)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH---------HHHHHHHHHHHHHCSSEEEEEE
T ss_pred             CcHhhHHHHHccCCCCCCeEEEEeeehhcCCH---------HHHHHHHHHHHHhCCCceEEEe
Confidence            31        1233344457888888988833         3467888888888765544433

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=81.37  E-value=0.71  Score=38.09  Aligned_cols=86  Identities=13%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             ceEEEccCCCCC-CCCCCcccEEEECCchhhhccccccCCch----HHHHHHHHHHHHHhccCCcEEEEEEcCC------
Q 043626           96 GDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNADKASHEP----RLRLKAFFGSLYRCLARGARAVFQIYPE------  164 (291)
Q Consensus        96 ~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~~~~~~~p----~~~l~~~l~~l~~~LkpgG~lv~~~~~~------  164 (291)
                      ..++++|..+.+ .++++++|+|+..... +...........    ..-+...+..++++|+++|.+++.....      
T Consensus        13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY-~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~   91 (320)
T d1booa_          13 GSMYIGDSLELLESFPEESISLVMTSPPF-ALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP   91 (320)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCC-SSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred             CEEEehhHHHHHhhCccCCCCEEEECCCC-cCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchhhcccc
Confidence            467888764422 3558899999987332 111000000111    1225678999999999999999865332      


Q ss_pred             --ChHHHHHHHHHHHHcCCC
Q 043626          165 --SVAQRELILGAAMRAGFA  182 (291)
Q Consensus       165 --~~~~~~~i~~~~~~aGF~  182 (291)
                        .......+...+...||.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~  111 (320)
T d1booa_          92 ARSIYNFRVLIRMIDEVGFF  111 (320)
T ss_dssp             EECCHHHHHHHHHHHTTCCE
T ss_pred             cccchhHHHHHHHHHhcCce
Confidence              234555666677777775

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.17  E-value=0.8  Score=31.30  Aligned_cols=65  Identities=18%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             eEEEEc-CCCchhH--HHHHHcCCeEEEEeCCHH-HHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626           54 LLLDIG-CGSGLSG--ETLSENGHQWIGLDISQS-MLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQ  124 (291)
Q Consensus        54 ~VLDiG-cGsG~~~--~~L~~~g~~v~gvDis~~-ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~  124 (291)
                      +|-=|| ||+|.++  ..|.++|+.|.|.|..+. +.+......  +.+..+.-...+    ...|+||..+++.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~G--i~i~~gh~~~~i----~~~d~vV~SsAI~   71 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLG--IPIFVPHSADNW----YDPDLVIKTPAVR   71 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT--CCEESSCCTTSC----CCCSEEEECTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCC--CeEEeeeccccc----CCCCEEEEecCcC
Confidence            444455 6677644  666788999999999873 333333332  445443221222    3579999887774