Citrus Sinensis ID: 043627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
MATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDSSQKPAFAMRRIEPANVFTPDNQSV
cccccccHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccEEEccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
cccccccHHHHHHHHcccccHHHHHHHHHHHHccHcHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccHHccccEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHccccHEccEccccccccccccccccccccccccccccc
MATLTCSASDLASLLNTVNDTSSAASYLCSRFdtisktlsdtsfaVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAfafgspsngfigrhffglrdvpspltdysFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVshwfwssdgwasptrsdnllfgsgvidfagsGVVHMVGGIAGLWgaliegprigrfdqsgrsvvlRGHSASLVVLGSFLLWfgwygfnpgSFLTILKSYgesggyygqwsaiGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAitsgcsvvePWAAIICGFVAAWVLIGCNKlgeklkyddpleaaqlhggcgtwgILFTGLFAREAyvgevypgrpgrpyglfmggggRLLAAQIIQILVIAGWVtatmgplfyglKKINllristddemagmdltrhggfayayhdeddssqkpafamrriepanvftpdnqsv
MATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDSSQKPAFAMRRIEpanvftpdnqsv
MATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWafaiaaagitsgsiaERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRtavtttlagctaalttlFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRllaaqiiqilviaGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDSSQKPAFAMRRIEPANVFTPDNQSV
*************LLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYH*****************************
*****CSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAY******************************
MATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDSSQKPAFAMRRIEPANVFTPDNQSV
****TCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDED**************************
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDSSQKPAFAMRRIEPANVFTPDNQSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query504 2.2.26 [Sep-21-2011]
O04161514 Ammonium transporter 1 me N/A no 0.996 0.976 0.792 0.0
Q9ZPJ8514 Ammonium transporter 1 me yes no 0.974 0.955 0.803 0.0
P54144501 Ammonium transporter 1 me no no 0.962 0.968 0.767 0.0
P58905488 Ammonium transporter 1 me N/A no 0.956 0.987 0.788 0.0
Q9SQH9498 Ammonium transporter 1 me no no 0.960 0.971 0.751 0.0
Q7XQ12498 Ammonium transporter 1 me yes no 0.946 0.957 0.772 0.0
Q6K9G1496 Ammonium transporter 1 me no no 0.928 0.943 0.790 0.0
Q9LK16496 Putative ammonium transpo no no 0.942 0.957 0.761 0.0
Q9SVT8504 Ammonium transporter 1 me no no 0.974 0.974 0.739 0.0
Q6K9G3498 Ammonium transporter 1 me no no 0.968 0.979 0.715 0.0
>sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/505 (79%), Positives = 445/505 (88%), Gaps = 3/505 (0%)

Query: 2   ATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAM 61
           + +TCSA++L   L +  + ++AA ++CSRF  +S+ L++T++AV+TTYLLFSAYLVFAM
Sbjct: 3   SAMTCSAAELFPHLGSSANATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAM 62

Query: 62  QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLR 121
           QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAG  SYYLFGFAFAFG+PSNGFIG+HFFGL+
Sbjct: 63  QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGFSYYLFGFAFAFGAPSNGFIGKHFFGLK 122

Query: 122 DVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWS 181
           + PS   DYS+FLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWS
Sbjct: 123 EFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWS 182

Query: 182 SDGWASPTRSD-NLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVL 240
            DGWAS +++D NLL   GVIDFAGSGVVHMVGGIAGLWGA IEGPRIGRFD+SGRSV L
Sbjct: 183 GDGWASASKTDGNLLLRFGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSVAL 242

Query: 241 RGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGES--GGYYGQWSAIGRTAVTTTLAG 298
           RGHSASLVVLG+FLLWFGWYGFNPGSFLTILKSY  +  G YYGQWSAIGRTAVTTTLAG
Sbjct: 243 RGHSASLVVLGTFLLWFGWYGFNPGSFLTILKSYDHTIRGTYYGQWSAIGRTAVTTTLAG 302

Query: 299 CTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGC 358
           CTAALTTLF KRLLV HWNV+DVCNGLLGGFAAITSGC+VVEPWAAI+CGF+AAWVLIG 
Sbjct: 303 CTAALTTLFCKRLLVAHWNVVDVCNGLLGGFAAITSGCAVVEPWAAIVCGFIAAWVLIGF 362

Query: 359 NKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGR 418
           N L  KLKYDDPLEAAQLHGGCG+WGI+FTGLFA++ YV EVYPG P RPYGLFMGGGG+
Sbjct: 363 NALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRPYGLFMGGGGK 422

Query: 419 LLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDED 478
           LL AQ+IQ++VI GWV+ TMGPLFY L K  LLRIS DDE AGMDLTRHGGFAY YHDED
Sbjct: 423 LLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHDED 482

Query: 479 DSSQKPAFAMRRIEPANVFTPDNQS 503
           + S  P F M R+EP N  TPD+Q+
Sbjct: 483 EGSSMPGFKMTRVEPTNTSTPDHQN 507
Ammonium transporter probably involved in ammonium uptake from the soil.
Solanum lycopersicum (taxid: 4081)
>sp|Q9ZPJ8|AMT12_ARATH Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1 Back     alignment and function description
>sp|P54144|AMT11_ARATH Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1 Back     alignment and function description
>sp|P58905|AMT11_SOLLC Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQH9|AMT13_ARATH Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q7XQ12|AMT11_ORYSJ Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK16|AMT15_ARATH Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1 Back     alignment and function description
>sp|Q9SVT8|AMT14_ARATH Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q6K9G3|AMT13_ORYSJ Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
397788016505 AMT1;2 [Citrus trifoliata] 1.0 0.998 0.980 0.0
374306736504 AMT1;2 [Pyrus betulifolia] 0.990 0.990 0.848 0.0
374306738504 AMT1;2 [Pyrus calleryana] gi|384237241|g 0.990 0.990 0.844 0.0
373501949504 ammonium transporter [Malus hupehensis] 0.990 0.990 0.842 0.0
374306740504 AMT1;2 [Pyrus x bretschneideri] 0.990 0.990 0.844 0.0
224145861506 ammonium transporter [Populus trichocarp 0.992 0.988 0.826 0.0
374306744504 AMT1;2 [Pyrus ussuriensis] 0.990 0.990 0.844 0.0
374306746504 AMT1;2 [Pyrus communis] 0.990 0.990 0.842 0.0
255562007510 ammonium transporter, putative [Ricinus 0.998 0.986 0.847 0.0
374306742504 AMT1;2 [Pyrus pyrifolia] 0.990 0.990 0.838 0.0
>gi|397788016|gb|AFO66661.1| AMT1;2 [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/505 (98%), Positives = 499/505 (98%), Gaps = 1/505 (0%)

Query: 1   MATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFA 60
           MATLTCSASDLAS LNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFA
Sbjct: 1   MATLTCSASDLASFLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFA 60

Query: 61  MQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGL 120
           MQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGL
Sbjct: 61  MQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGL 120

Query: 121 RDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFW 180
           RDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFW
Sbjct: 121 RDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFW 180

Query: 181 SSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVL 240
           SSDGWASPTR DNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVL
Sbjct: 181 SSDGWASPTRPDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVL 240

Query: 241 RGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCT 300
           RGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGG+YGQWSAIGRTAVTTTLAGCT
Sbjct: 241 RGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGHYGQWSAIGRTAVTTTLAGCT 300

Query: 301 AALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNK 360
           AALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNK
Sbjct: 301 AALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNK 360

Query: 361 LGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLL 420
           L EKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLL
Sbjct: 361 LAEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLL 420

Query: 421 AAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDS 480
           AAQIIQILVI GWVTATMGPLFYGL+KINLLRIS +DEMAGMDLTRHGGFAYAYHDEDDS
Sbjct: 421 AAQIIQILVIGGWVTATMGPLFYGLEKINLLRISREDEMAGMDLTRHGGFAYAYHDEDDS 480

Query: 481 SQKPAFAMRRIEPANV-FTPDNQSV 504
           SQKPAFAMRR+EPANV FTPDNQSV
Sbjct: 481 SQKPAFAMRRVEPANVFFTPDNQSV 505

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|374306736|gb|AEZ06601.1| AMT1;2 [Pyrus betulifolia] Back     alignment and taxonomy information
>gi|374306738|gb|AEZ06602.1| AMT1;2 [Pyrus calleryana] gi|384237241|gb|AFH74975.1| ammonium transporter AMT1;2 [Pyrus calleryana] Back     alignment and taxonomy information
>gi|373501949|gb|AEY75247.1| ammonium transporter [Malus hupehensis] gi|380719824|gb|AFD63113.1| high-affinity ammonium transporter [Malus hupehensis var. mengshanensis] Back     alignment and taxonomy information
>gi|374306740|gb|AEZ06603.1| AMT1;2 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|224145861|ref|XP_002325790.1| ammonium transporter [Populus trichocarpa] gi|222862665|gb|EEF00172.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|374306744|gb|AEZ06605.1| AMT1;2 [Pyrus ussuriensis] Back     alignment and taxonomy information
>gi|374306746|gb|AEZ06606.1| AMT1;2 [Pyrus communis] Back     alignment and taxonomy information
>gi|255562007|ref|XP_002522012.1| ammonium transporter, putative [Ricinus communis] gi|223538816|gb|EEF40416.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|374306742|gb|AEZ06604.1| AMT1;2 [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
UNIPROTKB|O04161514 AMT1-2 "Ammonium transporter 1 0.996 0.976 0.712 5.8e-201
TAIR|locus:2010791514 AMT1;2 "ammonium transporter 1 0.974 0.955 0.731 3.8e-197
TAIR|locus:2140877501 AMT1;1 "ammonium transporter 1 0.962 0.968 0.684 3.8e-188
UNIPROTKB|P58905488 AMT1-1 "Ammonium transporter 1 0.956 0.987 0.703 7.1e-187
UNIPROTKB|Q7XQ12498 AMT1-1 "Ammonium transporter 1 0.948 0.959 0.690 4.5e-185
TAIR|locus:2117758504 AMT1;4 "ammonium transporter 1 0.946 0.946 0.680 1.5e-184
TAIR|locus:2087173498 AMT1;3 "ammonium transporter 1 0.946 0.957 0.686 8.5e-184
TAIR|locus:2087168496 AMT1;5 "ammonium transporter 1 0.942 0.957 0.679 3e-181
UNIPROTKB|Q6K9G3498 AMT1-3 "Ammonium transporter 1 0.952 0.963 0.648 3.1e-170
UNIPROTKB|Q9FVN0460 AMT1-3 "Ammonium transporter 1 0.863 0.945 0.605 7.1e-148
UNIPROTKB|O04161 AMT1-2 "Ammonium transporter 1 member 2" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
 Score = 1945 (689.7 bits), Expect = 5.8e-201, P = 5.8e-201
 Identities = 360/505 (71%), Positives = 402/505 (79%)

Query:     2 ATLTCSASDLASLLNTVNDTSSAASYLCSRFDTISKTLSDTSFAVNTTYLLFSAYLVFAM 61
             + +TCSA++L   L +  + ++AA ++CSRF  +S+ L++T++AV+TTYLLFSAYLVFAM
Sbjct:     3 SAMTCSAAELFPHLGSSANATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAM 62

Query:    62 QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLR 121
             QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAG  SYYLFGFAFAFG+PSNGFIG+HFFGL+
Sbjct:    63 QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGFSYYLFGFAFAFGAPSNGFIGKHFFGLK 122

Query:   122 DVPSPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPIVSHWFWS 181
             + PS   DYS+FLYQW               ERTQFVAYLIYSSFLTGFVYPIVSHWFWS
Sbjct:   123 EFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWS 182

Query:   182 SDGWASPTRSD-NLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVL 240
              DGWAS +++D NLL   GVIDFAGSGVVHMVGGIAGLWGA IEGPRIGRFD+SGRSV L
Sbjct:   183 GDGWASASKTDGNLLLRFGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSVAL 242

Query:   241 RGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGES--GGYYGQWSAIGRXXXXXXXXX 298
             RGHSASLVVLG+FLLWFGWYGFNPGSFLTILKSY  +  G YYGQWSAIGR         
Sbjct:   243 RGHSASLVVLGTFLLWFGWYGFNPGSFLTILKSYDHTIRGTYYGQWSAIGRTAVTTTLAG 302

Query:   299 XXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGC 358
                     F KRLLV HWNV+DVCNGLLGGFAAITSGC+VVEPWAAI+CGF+AAWVLIG 
Sbjct:   303 CTAALTTLFCKRLLVAHWNVVDVCNGLLGGFAAITSGCAVVEPWAAIVCGFIAAWVLIGF 362

Query:   359 NKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGR 418
             N L  KLKYDDPLEAAQLHGGCG+WGI+FTGLFA++ YV EVYPG P RPYGLFMGGGG+
Sbjct:   363 NALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRPYGLFMGGGGK 422

Query:   419 XXXXXXXXXXXXXGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDED 478
                          GWV+ TMGPLFY L K  LLRIS DDE AGMDLTRHGGFAY YHDED
Sbjct:   423 LLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHDED 482

Query:   479 DSSQKPAFAMRRIEPANVFTPDNQS 503
             + S  P F M R+EP N  TPD+Q+
Sbjct:   483 EGSSMPGFKMTRVEPTNTSTPDHQN 507
GO:0015696 "ammonium transport" evidence=IGI
TAIR|locus:2010791 AMT1;2 "ammonium transporter 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140877 AMT1;1 "ammonium transporter 1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P58905 AMT1-1 "Ammonium transporter 1 member 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XQ12 AMT1-1 "Ammonium transporter 1 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2117758 AMT1;4 "ammonium transporter 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087173 AMT1;3 "ammonium transporter 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087168 AMT1;5 "ammonium transporter 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K9G3 AMT1-3 "Ammonium transporter 1 member 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FVN0 AMT1-3 "Ammonium transporter 1 member 3" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9BLG3AMT2_DICDINo assigned EC number0.40570.84320.9860yesno
Q9SVT8AMT14_ARATHNo assigned EC number0.73940.97420.9742nono
Q9SQH9AMT13_ARATHNo assigned EC number0.75150.96030.9718nono
Q9FVN0AMT13_SOLLCNo assigned EC number0.68020.86300.9456N/Ano
O04161AMT12_SOLLCNo assigned EC number0.79200.99600.9766N/Ano
Q7XQ12AMT11_ORYSJNo assigned EC number0.77210.94640.9578yesno
P58905AMT11_SOLLCNo assigned EC number0.78860.95630.9877N/Ano
Q9LK16AMT15_ARATHNo assigned EC number0.76150.94240.9576nono
Q9ZPJ8AMT12_ARATHNo assigned EC number0.80310.97420.9552yesno
P54144AMT11_ARATHNo assigned EC number0.76780.96230.9680nono
Q6K9G3AMT13_ORYSJNo assigned EC number0.71510.96820.9799nono
Q6K9G1AMT12_ORYSJNo assigned EC number0.79000.92850.9435nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrAMT1-2
ammonium transporter (507 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_scaffold_2958000001
Predicted protein (112 aa)
• •   • 0.827
eugene3.00021891
hypothetical protein (202 aa)
• •   • 0.517

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-161
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 1e-141
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-106
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 2e-72
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 1e-37
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  461 bits (1189), Expect = e-161
 Identities = 197/436 (45%), Positives = 248/436 (56%), Gaps = 44/436 (10%)

Query: 48  TTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG- 106
           T +LL +A LVF MQ GFA+L AG VR+KN +NIM+ N+LD A G+L ++LFG++ AFG 
Sbjct: 1   TAWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGE 60

Query: 107 -SPSNGFIGRHFFGLRDVP--------SPLTDYSFFLYQWAFAIAAAGITSGSIAERTQF 157
            +P NGFIG   FGL++            L D  FFL+Q  FA  AA I SG++AER +F
Sbjct: 61  DNPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKF 120

Query: 158 VAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAG 217
            AYL++S   T  VYP V+HW W   GW         L+  GV+DFAG GVVH+VGG+AG
Sbjct: 121 SAYLLFSVLWTTLVYPPVAHWVWGGGGW---------LYKLGVLDFAGGGVVHIVGGVAG 171

Query: 218 LWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGES 277
           L  AL+ GPRIGRF    R V +R H+  LVVLG+F+LWFGW+GFN GS L        +
Sbjct: 172 LAAALVLGPRIGRFP---RPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALA----ANGT 224

Query: 278 GGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCS 337
             Y          AV T LA     LT L    L  G   ++  CNG+L G  AIT GC 
Sbjct: 225 AAY---------AAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCG 275

Query: 338 VVEPWAAIICGFVA-AWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAY 396
           VV PW AII G VA     +  +KL +KLK DDPL+A  +HG  G WG++ TGLFA    
Sbjct: 276 VVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKV 335

Query: 397 VGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTD 456
            G           G  +GG G+ L  Q+I I  I  W       +   L K   LR+S +
Sbjct: 336 GGVG--------TGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEE 387

Query: 457 DEMAGMDLTRHGGFAY 472
           +E  G+DL  HG FAY
Sbjct: 388 EEKIGLDLAEHGEFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 504
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PRK10666428 ammonium transporter; Provisional 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.3e-114  Score=897.08  Aligned_cols=430  Identities=52%  Similarity=0.876  Sum_probs=390.8

Q ss_pred             hhhhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043627           24 AASYLCSRFDTISKTLSDT-SFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFA  102 (504)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~-~~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~  102 (504)
                      .+++.+++....+++..+. .+.-|+.|++.++++||+|||||+|||+|+||+||++|+|+||++|.+++.++||++||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~y~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~Gys   87 (500)
T KOG0682|consen    8 TATYIRGAGGNVLTKFTPNAYDLDNTAWLLSSSFLVFTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYS   87 (500)
T ss_pred             ccccccccccccccccCcchhcCCchhhHHHHHHHHHHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            3455555554444444444 344678899999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCC-CCccccccc-cccccCCCC------CchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhccc
Q 043627          103 FAFGSP-SNGFIGRHF-FGLRDVPSP------LTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPI  174 (504)
Q Consensus       103 lafG~~-~~~fiG~~~-f~~~~~~~~------~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~  174 (504)
                      |+||+. .|+|||... |++++.+.+      .+++.+++||++||+++++|++|+++||+|+++|++|+++|.++||||
T Consensus        88 lAFg~~~~n~FiG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~  167 (500)
T KOG0682|consen   88 LAFGDSPSNGFIGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCP  167 (500)
T ss_pred             eeccCCCCCCceeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccc
Confidence            999987 799999965 777766422      248999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCCccCCCCCCccccCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHH
Q 043627          175 VSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFL  254 (504)
Q Consensus       175 ~ahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~l  254 (504)
                      ++||+|+++||++         ++|++|||||++||++||++||++++++|||++||++  +..++||||+++++||++|
T Consensus       168 ~a~W~W~~~Gw~~---------~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~--~~~~~~~hsv~~v~LGt~l  236 (500)
T KOG0682|consen  168 VAHWVWSPNGWLY---------KLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFG--KAIALRPHSVTLVVLGTFL  236 (500)
T ss_pred             cceeeecCCceee---------ecceeeccCCceeEecccHHHHHHHHHhCCccCcccc--cccccCCCchhHHHHHHHH
Confidence            9999999999998         5899999999999999999999999999999999843  4467899999999999999


Q ss_pred             HHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeecc
Q 043627          255 LWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITS  334 (504)
Q Consensus       255 Lw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa  334 (504)
                      |||||++||+||.+.++        -+ .   .+|+++||+||++.|++||++++|+++|||++..+|||+|+|||||||
T Consensus       237 LWfGWl~FN~GS~~~i~--------~~-~---~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~  304 (500)
T KOG0682|consen  237 LWFGWLGFNGGSFYAIN--------LR-S---WARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITP  304 (500)
T ss_pred             HHHHHHccCCccccccc--------ch-h---HHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcC
Confidence            99999999999998872        11 1   139999999999999999999999999999999999999999999999


Q ss_pred             CCCCcChhHHHHHHHhhhHhhhhhhccccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccc
Q 043627          335 GCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMG  414 (504)
Q Consensus       335 ~~~~v~p~~A~iiG~iag~v~~~~~~l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~g  414 (504)
                      +|++++||+|+++|++++++|++..++++|+|||||+|++++||+||+||+|++|+|+.+++....++.. .++.|++++
T Consensus       305 gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~-~~~~G~~~~  383 (500)
T KOG0682|consen  305 GCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTI-ARISGLWMG  383 (500)
T ss_pred             CCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCc-cCCCceeec
Confidence            9999999999999999999999999999999999999999999999999999999999987554433321 356799999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCChHHHhcCCcccccccccCCCCCC
Q 043627          415 GGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINL-LRISTDDEMAGMDLTRHGGFAYAYHDE  477 (504)
Q Consensus       415 g~~~ql~~Ql~g~~vi~~w~~~~t~ii~~il~~~~~-LRv~~e~E~~GlD~~~hg~~ay~~~~~  477 (504)
                      ++++||++|+++++++.+|+++++.++++++||+++ |||++|||+.|+|..||||.+|++.+.
T Consensus       384 ~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~  447 (500)
T KOG0682|consen  384 HGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHES  447 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhc
Confidence            999999999999999999999999999999999999 999999999999999999999998774

>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 5e-27
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 5e-25
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 5e-25
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 7e-25
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 7e-25
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 7e-25
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 5e-24
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 5e-24
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 7e-24
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-23
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-23
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-23
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 1e-23
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-22
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 4e-20
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 174/439 (39%), Gaps = 66/439 (15%)
Query: 47  NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
           N  ++L S  LV  M  G     AG VR KN +N++  + +      L +  +G++ +FG
Sbjct: 5   NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 107 SPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSF 166
           +  +G IG   + L        D  F +YQ                ER +  ++++ S+ 
Sbjct: 65  NDISGIIGGLNYALLSGVKG-EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSAL 123
Query: 167 LTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGP 226
              FVY   +HW W   GW +           G +DFAG  VVH+  G A L  A+  G 
Sbjct: 124 WLTFVYAPFAHWLWGG-GWLAKL---------GALDFAGGMVVHISSGFAALAVAMTIGK 173
Query: 227 RIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFL----------TILKSYGE 276
           R G  + S     +  HS  L ++G+ LLWFGW+GFN GS L           +  +   
Sbjct: 174 RAGFEEYS-----IEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAA 228
Query: 277 SGGYYGQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGC 336
             G+   W  IG                       + G    + + +G + G AAIT   
Sbjct: 229 VAGFV--WMVIGW----------------------IKGKPGSLGIVSGAIAGLAAITPAA 264
Query: 337 SVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAR--- 393
             V+   AI+ G VA  V         K K D+ L+A  +HG  G WG +  G+ A    
Sbjct: 265 GFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEV 324
Query: 394 EAYVGEVYPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINLLRI 453
             Y G ++ G P       +                    V A +G           LR+
Sbjct: 325 NGYAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLILAKA-VDAAVG-----------LRV 371
Query: 454 STDDEMAGMDLTRHGGFAY 472
           S+ +E  G+DL++H   AY
Sbjct: 372 SSQEEYVGLDLSQHEEVAY 390
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
3b9w_A407 Ammonium transporter family; membrane protein, amm 2e-81
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 3e-81
1u7g_A385 Probable ammonium transporter; right handed helica 1e-69
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 9e-61
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
 Score =  258 bits (660), Expect = 2e-81
 Identities = 78/423 (18%), Positives = 129/423 (30%), Gaps = 66/423 (15%)

Query: 70  AGSVRAKN-TMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDV----- 123
           A  V   N ++NI+   ++      +    +GF+   G+      G   + L        
Sbjct: 11  ARLVAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFG 70

Query: 124 PSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSD 183
            +        +    FA+A   I  G++  R +   Y + + F+   VY +        +
Sbjct: 71  HALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIV-PVYLLNEWLVLD-N 128

Query: 184 GWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGH 243
                          G  D AGS  +H  G   GL  ++       R     + +     
Sbjct: 129 AS---------GLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQR----AQPIESDAT 175

Query: 244 SASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAAL 303
           S    +LGS +LW  W  F                     +  + +T V T LA C A L
Sbjct: 176 SDRFSMLGSMVLWLFWPSFATAI---------------VPFEQMPQTIVNTLLALCGATL 220

Query: 304 TTL-FSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGC---- 358
            T   S     G  +++D+ N  L G  AI S C++V P  A + G +   + +      
Sbjct: 221 ATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFI 280

Query: 359 -NKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGG 417
              L  K K  D      LHG  G  G     L                           
Sbjct: 281 QPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIV------------------------P 316

Query: 418 RLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDE 477
            +  AQ+  I +               +K     + + +D    + L        A    
Sbjct: 317 GIAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKAERLV 376

Query: 478 DDS 480
            ++
Sbjct: 377 LEA 379
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=2.1e-109  Score=866.48  Aligned_cols=394  Identities=31%  Similarity=0.537  Sum_probs=361.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccc-ccccccc
Q 043627           44 FAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGR-HFFGLRD  122 (504)
Q Consensus        44 ~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~-~~f~~~~  122 (504)
                      ++.|+.|+|+|++|||+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|||+ .++++.+
T Consensus         2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~~~   81 (399)
T 2b2h_A            2 SDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSG   81 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGGTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhccC
Confidence            357999999999999999999999999999999999999999999999999999999999999766789998 4555554


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceee
Q 043627          123 VPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVID  202 (504)
Q Consensus       123 ~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~D  202 (504)
                      ...  .++.+++||++||+++++|++||++||+|+.+|++|+++|+++||||++||+|+ +|||.         ++|++|
T Consensus        82 ~~~--~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~---------~lG~~D  149 (399)
T 2b2h_A           82 VKG--EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLA---------KLGALD  149 (399)
T ss_dssp             CCT--HHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH---------HTTCCC
T ss_pred             CCC--CchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHH---------hcCCcc
Confidence            332  248899999999999999999999999999999999999999999999999998 89997         589999


Q ss_pred             ecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCC
Q 043627          203 FAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYG  282 (504)
Q Consensus       203 faGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~  282 (504)
                      ||||+|||++||++||+++++||||++|. +    +++||||++++++|+++||+||||||+||++..        +   
T Consensus       150 FAGs~vVH~~gG~~aL~~a~~LG~R~g~~-~----~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~--------~---  213 (399)
T 2b2h_A          150 FAGGMVVHISSGFAALAVAMTIGKRAGFE-E----YSIEPHSIPLTLIGAALLWFGWFGFNGGSALAA--------N---  213 (399)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHCCCTTTT-T----SCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSS--------S---
T ss_pred             ccCCeEEEechhHHHHHHHHHcCCCCCCC-C----CCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccc--------c---
Confidence            99999999999999999999999999853 2    367999999999999999999999999998765        1   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhhhhhhccc
Q 043627          283 QWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLG  362 (504)
Q Consensus       283 ~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~l~  362 (504)
                        ..++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...+++
T Consensus       214 --~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~  290 (399)
T 2b2h_A          214 --DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFR  290 (399)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              3578999999999999999999999999 9999999999999999999999999999999999999999997777889


Q ss_pred             cccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043627          363 EKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLF  442 (504)
Q Consensus       363 ~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~~~~t~ii~  442 (504)
                      +|+|||||||++++||+||+||++++|+|++++..     +    ..|++| ++++|++.|+++++++++|+++.+++++
T Consensus       291 ~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-----g----~~Gl~~-g~~~ql~~Ql~g~~~~~~~~~v~~~i~~  360 (399)
T 2b2h_A          291 IKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN-----G----YAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLILA  360 (399)
T ss_dssp             HHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH-----S----CCCGGG-TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCceeccchhhHHHHHHHHHHcccccc-----C----CCcccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987521     1    137888 5689999999999999999999999999


Q ss_pred             HHHhhcccCCCChHHHhcCCcccccccccCCCCCCC
Q 043627          443 YGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDED  478 (504)
Q Consensus       443 ~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~~  478 (504)
                      +++|++.+|||++|||++|||.+||||++|+.+..+
T Consensus       361 ~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~~~  396 (399)
T 2b2h_A          361 KAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEHHH  396 (399)
T ss_dssp             HHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC-----
T ss_pred             HHHHhcccCCCCHHHHHhCCCHHHhCcccCCccccc
Confidence            999999999999999999999999999999876654
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 504
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 4e-56
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  189 bits (482), Expect = 4e-56
 Identities = 104/414 (25%), Positives = 173/414 (41%), Gaps = 44/414 (10%)

Query: 47  NTTYLLFSAYLVFAMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAF 105
           +  +++    LV  M + G A+   G +R KN ++++    +  A   + + ++G++ A 
Sbjct: 7   DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAS 66

Query: 106 GSPSNGFIGRHFFGLRDVPS-----PLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAY 160
           G  +N F   ++  L+++        +  Y    +Q +FA    G+  G++AER +F A 
Sbjct: 67  GEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAV 126

Query: 161 LIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWG 220
           LI+        Y  ++H  W             LL   G +DFAG  VVH+   IAGL G
Sbjct: 127 LIFVVVWLTLSYIPIAHMVW----------GGGLLASHGALDFAGGTVVHINAAIAGLVG 176

Query: 221 ALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGY 280
           A + G R+G   ++ +      H+  +V  G+ +L+ GW+GFN GS  T           
Sbjct: 177 AYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGSAGT----------- 220

Query: 281 YGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVE 340
                      V T +A   A L  +F +  L G  +++  C+G + G   +T  C  + 
Sbjct: 221 --ANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIG 278

Query: 341 PWAAIICGFVAAWVL-IGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGE 399
              A+I G VA      G   L   L+ DDP +   +HG CG  G + TG+FA  +  G 
Sbjct: 279 VGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGV 338

Query: 400 VYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRI 453
            +               G  L  Q+  I +   W        +        LR+
Sbjct: 339 GFAE---------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-92  Score=736.24  Aligned_cols=374  Identities=28%  Similarity=0.476  Sum_probs=336.2

Q ss_pred             ccccchHHHHHHHHHHHHHHH-HHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccc-ccc
Q 043627           42 TSFAVNTTYLLFSAYLVFAMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRH-FFG  119 (504)
Q Consensus        42 ~~~~~d~~w~l~~~~lV~~M~-~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~-~f~  119 (504)
                      +.++.|++|+++|++||++|| |||+|+|+|+||+||++|+++||++|+++++++||++||+++||++ ++++|+. ++.
T Consensus         2 ~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           2 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             CcCcccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            456799999999999999998 8999999999999999999999999999999999999999999975 5677764 444


Q ss_pred             cccCCC-----CCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCcc
Q 043627          120 LRDVPS-----PLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNL  194 (504)
Q Consensus       120 ~~~~~~-----~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~  194 (504)
                      +.+.+.     ..+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~-~g~l~-------  152 (383)
T d1u7ga_          81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLA-------  152 (383)
T ss_dssp             GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH-------
T ss_pred             ccCcccccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheecC-CCccc-------
Confidence            443322     12578999999999999999999999999999999999999999999999999997 89997       


Q ss_pred             ccCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhcc
Q 043627          195 LFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSY  274 (504)
Q Consensus       195 ~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~  274 (504)
                        ++|++|||||+|||++||+++|++++++|||++|+++     ++||||++++.+|+++||+||+|||+||++..+   
T Consensus       153 --~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~-----~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~---  222 (383)
T d1u7ga_         153 --SHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKE-----AFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN---  222 (383)
T ss_dssp             --HHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCS-----SCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSS---
T ss_pred             --cCCceeccCceeeeecccHHHHHHHHhcCCccccccc-----ccccCChhhhhHHHHHHHHHHHHhccccccccc---
Confidence              5899999999999999999999999999999998643     468999999999999999999999999986541   


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHh
Q 043627          275 GESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWV  354 (504)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v  354 (504)
                                ....++.+||++|++++++++++.+++++||+|+..++||+|+|||+|||+|++++||+|++||+++|++
T Consensus       223 ----------~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i  292 (383)
T d1u7ga_         223 ----------EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLA  292 (383)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHH
Confidence                      3567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhc-cccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 043627          355 LIGCNK-LGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGW  433 (504)
Q Consensus       355 ~~~~~~-l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w  433 (504)
                      |+...+ +++|+|||||||++++||+||+||++++|+|++++...  +.+.    .+   ...++|++.|++|++++++|
T Consensus       293 ~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g--~~~~----~~---~~~~~ql~~Ql~g~~v~~~~  363 (383)
T d1u7ga_         293 GLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGG--VGFA----EG---VTMGHQLLVQLESIAITIVW  363 (383)
T ss_dssp             HHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTC--CCCC----TT---CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCccccc--cccc----cc---cchHHHHHHHHHHHHHHHHH
Confidence            966655 55689999999999999999999999999999876211  1100    01   13468999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCC
Q 043627          434 VTATMGPLFYGLKKINLLRI  453 (504)
Q Consensus       434 ~~~~t~ii~~il~~~~~LRv  453 (504)
                      +++.++++++++|++.+|||
T Consensus       364 ~~~~~~ii~~il~~~~gLRV  383 (383)
T d1u7ga_         364 SGVVAFIGYKLADLTVGLRV  383 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCSBC
T ss_pred             HHHHHHHHHHHHHhCcCCcC
Confidence            99999999999999999997