Citrus Sinensis ID: 043639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MLLFTNHLLLLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLHYL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccEEEcccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccccEEEEccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccEEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccEEEcccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccEccEEEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccEEHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLLFTNHLLLLIFIIFIhespqciavrstpkfklkqsdkydpaeatrhkkdyvlfpgkprwtrhvpmtlsyafskeNMINYLHITDIKAVFKRAFSKwasvipvsfietddydfadirigfyngdhgdgepfdgVLGVLahsfspesgkfhLDAAETWavdfgsekspvavdlESVAVHEIGHLlglthspvkeavmyptlkprdkkvdlALDDIQGVqalygsnpnftigslvesdistnlAVDLRIKSSMWATMMLHYL
Flexible Loop (DISEMBL)
MLLFTNHLLLLIFIIFIHESPQCIAVrstpkfklkqsdkydpaeatrhkkdyvlfpgkprwtrhVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHllglthspvKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLHYL
Low Complexity Region (SEG)
MLLFTNHllllifiifiHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLHYL
Disordered region (IsUnstruct)
*LLFTNHLLLLIFIIFIHESPQCIAVRST*******************KKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLH**
Disordered Region (DISOPRED)
**LFT*HLLLLIFIIFIHESPQCIAVRSTPKFKLKQSD*************YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG*********************DLRIKSSMWATMMLHYL
Disordered Region (DISEMBL)
MLLFTNHLLLLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLHYL
Disordered Region (DISPRO)
MLLFTNHLLLLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN********SDISTNLAVDLRIKSSMWATMMLHYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLFTNHLLLLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLHYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
P29136	305	Metalloendoproteinase 1 O	no	no	0.655	0.560	0.494	5e-41
P22757	587	Hatching enzyme OS=Parace	N/A	no	0.597	0.265	0.430	8e-29
P79287	483	Matrix metalloproteinase-	yes	no	0.639	0.345	0.398	2e-28
O60882	483	Matrix metalloproteinase-	yes	no	0.636	0.343	0.401	3e-28
P91953	591	50 kDa hatching enzyme OS	N/A	no	0.613	0.270	0.414	1e-27
P57748	482	Matrix metalloproteinase-	yes	no	0.616	0.334	0.395	2e-27
O18767	481	Matrix metalloproteinase-	no	no	0.639	0.347	0.382	9e-27
P13943	468	Interstitial collagenase	no	no	0.693	0.386	0.381	1e-25
P22894	467	Neutrophil collagenase OS	no	no	0.624	0.349	0.397	6e-25
O70138	465	Neutrophil collagenase OS	no	no	0.632	0.354	0.386	7e-25

>sp|P29136|MEP1_SOYBN Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 111/178 (62%), Gaps = 7/178 (3%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
           DY  F   PRW       L+YAFS E  ++       K+   RAFSKW  V+ ++F ET 
Sbjct: 133 DYTFFKDMPRWQAGT-TQLTYAFSPEPRLD----DTFKSAIARAFSKWTPVVNIAFQETT 187

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPV- 169
            Y+ A+I+I F + +HGD  PFDG  G+L H+F+P  G+ H DA E W       KSPV 
Sbjct: 188 SYETANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWVASGDVTKSPVT 247

Query: 170 -AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNP 226
            A DLESVAVHEIGHLLGL HS    A+MYP++ PR +KV+LA DDI G++ LYG NP
Sbjct: 248 SAFDLESVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLAQDDIDGIRKLYGINP 305

Specificity similar to that of mammalian matrix metalloproteases. May act against cell wall components.
Glycine max (taxid: 3847)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|P22757|HE_PARLI Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 61  WTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIG 120
           W+R+ P+T S+      + + L+  D+K   +RAF  W  V  +SF E  D    DIRI 
Sbjct: 174 WSRNQPVTYSFG----ALTSDLNQNDVKDEIRRAFRVWDDVSGLSFREVPDTTSVDIRIK 229

Query: 121 FYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHE 180
           F + DHGDG  FDG  GVLAH+F P +G  H D +ETW     +E +    +L  VA HE
Sbjct: 230 FGSYDHGDGISFDGRGGVLAHAFLPRNGDAHFDDSETW-----TEGTRSGTNLFQVAAHE 284

Query: 181 IGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
            GH LGL HS V+ A+MYP  +       L  DDI G+++LYGSN
Sbjct: 285 FGHSLGLYHSTVRSALMYPYYQGYVPNFRLDNDDIAGIRSLYGSN 329

Allows the sea urchin to digest the protective envelope derived from the egg extracellular matrix; thus allowing the sea urchin to swim freely.

Paracentrotus lividus (taxid: 7656)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 2

>sp|P79287|MMP20_PIG Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 100/183 (54%), Gaps = 16/183 (8%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
           +Y LFPG+P+W ++   TL+Y  SK      +   ++    + A   W+S +P+SF+  +
Sbjct: 107 NYRLFPGEPKWKKN---TLTYRISK--YTPSMTPAEVDKAMEMALQAWSSAVPLSFVRVN 161

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
             + ADI I F  GDHGD  PFDG  G LAH+F+P     G  H D AE W +       
Sbjct: 162 AGE-ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGMN---- 216

Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYGSNP 226
               +L +VA HE GH LGL HS    A+MYPT K ++     L  DD++G+QALYG   
Sbjct: 217 --GFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQNPYGFHLPKDDVKGIQALYGPRK 274

Query: 227 NFT 229
            FT
Sbjct: 275 TFT 277

Degrades amelogenin, the major protein component of the enamel matrix and two of the macromolecules characterizing the cartilage extracellular matrix: aggrecan and the cartilage oligomeric matrix protein (COMP). May play a central role in tooth enamel formation.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|O60882|MMP20_HUMAN Matrix metalloproteinase-20 OS=Homo sapiens GN=MMP20 PE=1 SV=3

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 16/182 (8%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
           +Y LFPG+P+W ++   TL+Y  SK      +   ++    + A   W+S +P+SF+  +
Sbjct: 107 NYRLFPGEPKWKKN---TLTYRISK--YTPSMSSVEVDKAVEMALQAWSSAVPLSFVRIN 161

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
             + ADI I F NGDHGD  PFDG  G LAH+F+P     G  H D AE W +       
Sbjct: 162 SGE-ADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGTN---- 216

Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYGSNP 226
               +L +VA HE GH LGL HS    A+MYPT K ++     L  DD++G+QALYG   
Sbjct: 217 --GFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYGPRK 274

Query: 227 NF 228
            F
Sbjct: 275 VF 276

Degrades amelogenin, the major protein component of the enamel matrix and two of the macromolecules characterizing the cartilage extracellular matrix: aggrecan and the cartilage oligomeric matrix protein (COMP). May play a central role in tooth enamel formation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P91953|HE_HEMPU 50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus PE=1 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 57  GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           G   W R+V +T S+      + N L  T IK   +RAF  W  V  ++F E  D    D
Sbjct: 173 GGIAWPRNVAVTYSFG----TLSNDLSQTAIKNELRRAFQVWDDVSSLTFREVVDSSSVD 228

Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESV 176
           IRI F + +HGDG  FDG  GVLAH+F P +G  H D +E W +   S       +L  V
Sbjct: 229 IRIKFGSYEHGDGISFDGQGGVLAHAFLPRNGDAHFDDSERWTIGTNS-----GTNLFQV 283

Query: 177 AVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
           A HE GH LGL HS V+ A+MYP  +  +   +L  DDI G+ +LYG N
Sbjct: 284 AAHEFGHSLGLYHSDVQSALMYPYYRGYNPNFNLDRDDIAGITSLYGRN 332

Allows the sea urchin to digest the protective envelope derived from the egg extracellular matrix; thus allowing the sea urchin to swim freely.

Hemicentrotus pulcherrimus (taxid: 7650)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 2

>sp|P57748|MMP20_MOUSE Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 16/177 (9%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
           +Y LFPG+P+W +++   L+Y  SK      +  T++    + A   W++ +P++F+  +
Sbjct: 106 NYRLFPGEPKWKKNI---LTYRISK--YTPSMSPTEVDKAIQMALHAWSTAVPLNFVRIN 160

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
             + ADI I F  GDHGD  PFDG  G LAH+F+P     G  H D AE W +  G+   
Sbjct: 161 SGE-ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM--GTN-- 215

Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYG 223
               +L +VA HE GH LGL HS    A+MYPT K ++  +  L  DD++G+QALYG
Sbjct: 216 --GFNLFTVAAHEFGHALGLGHSTDPSALMYPTYKYQNPYRFHLPKDDVKGIQALYG 270

Degrades amelogenin, the major protein component of the enamel matrix and two of the macromolecules characterizing the cartilage extracellular matrix: aggrecan and the cartilage oligomeric matrix protein (COMP). May play a central role in tooth enamel formation.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|O18767|MMP20_BOVIN Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1

 Score =  120 bits (301), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 100/183 (54%), Gaps = 16/183 (8%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
           +Y LFPG+P+W ++   TL+Y  SK      +   ++    + A   W+S +P++F+  +
Sbjct: 105 NYRLFPGEPKWKKN---TLTYRISK--YTPSMTPAEVDRAMEMALRAWSSAVPLNFVRIN 159

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
             + ADI I F  GDHGD  PFDG  G LAH+F+P     G  H D AE W +       
Sbjct: 160 AGE-ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGTN---- 214

Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYGSNP 226
               +L +VA HE GH LGL HS    A+M+PT K ++     L  DD++G+QALYG   
Sbjct: 215 --GFNLFTVAAHEFGHALGLAHSTDPSALMFPTYKYQNPYGFRLPKDDVKGIQALYGPRR 272

Query: 227 NFT 229
            F+
Sbjct: 273 AFS 275

Degrades amelogenin, the major protein component of the enamel matrix and two of the macromolecules characterizing the cartilage extracellular matrix: aggrecan and the cartilage oligomeric matrix protein (COMP). May play a central role in tooth enamel formation.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P13943|MMP1_RABIT Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 99/199 (49%), Gaps = 18/199 (9%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +VL PG PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +   
Sbjct: 99  FVLTPGNPRWEQ---THLTYRI--ENYTPDLSRADVDNAIEKAFQLWSNVTPLTFTKVSK 153

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
              ADI I F  GDH D  PFDG  G LAH+F P     G  H D  + W  DF +    
Sbjct: 154 GQ-ADIMISFVRGDHRDNSPFDGPEGQLAHAFQPGLGIGGDVHFDEDDRWTKDFRN---- 208

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG--SNP 226
              +L  VA HE+GH LGL+HS    A+MYP        V LA DDI G+QA+YG   NP
Sbjct: 209 --YNLYRVAAHELGHSLGLSHSTDIGALMYPNYM-FSGDVQLAQDDIDGIQAIYGPSQNP 265

Query: 227 NFTIGSLVESDISTNLAVD 245
           +  +G        + L  D
Sbjct: 266 SQPVGPQTPKVCDSKLTFD 284

Cleaves collagens of types I, II, and III at one site in the helical domain. Also cleaves collagens of types VII and X.

Oryctolagus cuniculus (taxid: 9986)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 7

>sp|P22894|MMP8_HUMAN Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 90/181 (49%), Gaps = 18/181 (9%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           ++L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F     
Sbjct: 99  FMLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ 153

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
            + ADI I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        + 
Sbjct: 154 GE-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTS 206

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG--SN 225
              +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG  SN
Sbjct: 207 ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYGLSSN 266

Query: 226 P 226
           P
Sbjct: 267 P 267

Can degrade fibrillar type I, II, and III collagens.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 3

EC: 4

>sp|O70138|MMP8_MOUSE Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=2

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 95/181 (52%), Gaps = 16/181 (8%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
           D++L PG P+WT H  +T    +   N    L   ++K   ++AF  W+   P++F E  
Sbjct: 98  DFLLTPGSPKWT-HTNLT----YRIINHTPQLSRAEVKTAIEKAFHVWSVASPLTFTEIL 152

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKS 167
             + ADI I F + DHGD  PFDG  G+LAH+F P     G  H D+ ETW  D  +   
Sbjct: 153 QGE-ADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETWTQDSKN--- 208

Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV-DLALDDIQGVQALYGSNP 226
               +L  VA HE GH LGL+HS    A+MYP    R+     L  DDI G+Q +YG + 
Sbjct: 209 ---YNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSD 265

Query: 227 N 227
           N
Sbjct: 266 N 266

Can degrade fibrillar type I, II, and III collagens. May play a role in the degradation of collagen fibers during uterine involution.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 3

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255541150	363	Metalloendoproteinase 1 precursor, putat	0.800	0.575	0.793	8e-95
147812598	353	hypothetical protein VITISV_024635 [Viti	0.873	0.645	0.682	8e-89
224136988	295	predicted protein [Populus trichocarpa]	0.877	0.776	0.696	4e-88
225453480	353	PREDICTED: metalloendoproteinase 1 [Viti	0.831	0.614	0.702	1e-87
15225398	342	matrix metalloprotease domain-containing	0.819	0.625	0.706	5e-84
359495960	302	PREDICTED: metalloendoproteinase 1-like	0.869	0.751	0.635	1e-83
297824541	336	matrix metalloproteinase [Arabidopsis ly	0.823	0.639	0.694	3e-83
3128477	341	metalloproteinase [Arabidopsis thaliana]	0.816	0.624	0.702	2e-82
147773502	373	hypothetical protein VITISV_013507 [Viti	0.842	0.589	0.637	5e-81
356523082	381	PREDICTED: metalloendoproteinase 1-like	0.750	0.514	0.709	7e-81

>gi|255541150|ref|XP_002511639.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223548819|gb|EEF50308.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 169/213 (79%), Positives = 188/213 (88%), Gaps = 4/213 (1%)

Query: 46  TRHK----KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASV 101
           T HK    ++YV FPGKPRW R +PM L+YAFS EN+I+YL I+D++ VFKRAFS+W SV
Sbjct: 133 TGHKLHVSRNYVYFPGKPRWGRDIPMNLTYAFSPENLISYLKISDLQEVFKRAFSRWESV 192

Query: 102 IPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVD 161
           IPVSFIE  DY +ADI+IGFYNGDHGDGEPFDG+LGVLAHSFSPESGKFHLDAAETWAVD
Sbjct: 193 IPVSFIEISDYSYADIKIGFYNGDHGDGEPFDGILGVLAHSFSPESGKFHLDAAETWAVD 252

Query: 162 FGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQAL 221
           F SEKS VAVDLESVAVHEIGHLLGL HS VKEAVMYP+LKPR KKVDL++DDIQGVQAL
Sbjct: 253 FESEKSKVAVDLESVAVHEIGHLLGLAHSSVKEAVMYPSLKPRKKKVDLSVDDIQGVQAL 312

Query: 222 YGSNPNFTIGSLVESDISTNLAVDLRIKSSMWA 254
           YGSNPN+T+GSL+ESDISTN AV LRI SS WA
Sbjct: 313 YGSNPNYTLGSLLESDISTNQAVRLRITSSPWA 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812598|emb|CAN66084.1| hypothetical protein VITISV_024635 [Vitis vinifera]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/233 (68%), Positives = 185/233 (79%), Gaps = 5/233 (2%)

Query: 29  TPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIK 88
           +P+  ++  D   P  A  H   YV FPGKPRW R +PMTL+YAFS EN++ YL + DI+
Sbjct: 120 SPRCGMR--DAMQPMHAAMH---YVYFPGKPRWARPIPMTLTYAFSPENLVGYLSLEDIR 174

Query: 89  AVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG 148
             FKRAF++WASVIPVSF ETD Y FADI+IGFY GDHGDGEPFDGVLGVLAH+FSPESG
Sbjct: 175 GGFKRAFARWASVIPVSFTETDTYSFADIKIGFYRGDHGDGEPFDGVLGVLAHAFSPESG 234

Query: 149 KFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV 208
           KFHLDAAETWAVD  SEKS VA+DLESVA HEIGHLLGL HSPVKE+VMYP+LKPR KK 
Sbjct: 235 KFHLDAAETWAVDLESEKSTVAIDLESVATHEIGHLLGLAHSPVKESVMYPSLKPRAKKA 294

Query: 209 DLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLHYL 261
           DL LDDI+ VQALYGSNPNF   S +ESDIS+N A+D R++S    +++L  L
Sbjct: 295 DLKLDDIEAVQALYGSNPNFKFASSMESDISSNQAIDFRVRSYRKLSILLPIL 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136988|ref|XP_002326995.1| predicted protein [Populus trichocarpa] gi|222835310|gb|EEE73745.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 163/234 (69%), Positives = 191/234 (81%), Gaps = 5/234 (2%)

Query: 30  PKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINY-LHITDIK 88
           P+  +     +    A+RH   Y  FPGKPRWTR +PMTL+Y+FSKEN+IN  L ++DI+
Sbjct: 60  PRCGVPDDTMFHKLHASRH---YFYFPGKPRWTRSIPMTLTYSFSKENLINVSLSLSDIE 116

Query: 89  AVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG 148
            VFK AF+KW SVIPVSF+ETDDY FADI+IGFY+GDHGDGEPFDGVLGVLAHSFSPESG
Sbjct: 117 EVFKGAFAKWGSVIPVSFVETDDYAFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPESG 176

Query: 149 KFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV 208
           +FHLDA ETWA+DF  EKS VAV LESVAVHEIGHLLGL HS  ++AVMYP+LKPR KK+
Sbjct: 177 RFHLDARETWAIDFDLEKSKVAVHLESVAVHEIGHLLGLGHSSDEKAVMYPSLKPRKKKL 236

Query: 209 DLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDL-RIKSSMWATMMLHYL 261
           DL++DDIQGVQALYGSNPNFT+GSL+ESDISTN A DL RI+ S W   ++  L
Sbjct: 237 DLSVDDIQGVQALYGSNPNFTLGSLLESDISTNEAADLIRIRLSQWWVTLIMAL 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453480|ref|XP_002274477.1| PREDICTED: metalloendoproteinase 1 [Vitis vinifera] gi|297734565|emb|CBI16616.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 179/222 (80%), Gaps = 5/222 (2%)

Query: 29  TPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIK 88
           +P+  ++  D   P  A  H   YV FPGKPRW R +PMTL+YAFS EN++ YL + DI+
Sbjct: 120 SPRCGMR--DAMQPMHAAMH---YVYFPGKPRWARPIPMTLTYAFSPENLVGYLSLEDIR 174

Query: 89  AVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG 148
             FK AF++WASVIPVSF ETD Y FADI+IGFY GDHGDGEPFDGVLGVLAH+FSPESG
Sbjct: 175 GAFKLAFARWASVIPVSFSETDTYSFADIKIGFYRGDHGDGEPFDGVLGVLAHAFSPESG 234

Query: 149 KFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV 208
           KFHLDAAETWAVD  SEKS VA+DLESVA HEIGHLLGL HSPVKE+VMYP+LKPR KK 
Sbjct: 235 KFHLDAAETWAVDLESEKSTVAIDLESVATHEIGHLLGLAHSPVKESVMYPSLKPRAKKA 294

Query: 209 DLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKS 250
           DL LDDI+ VQALYGSNPNF   S +ESDIS+N A+D R++S
Sbjct: 295 DLKLDDIEAVQALYGSNPNFKFASSMESDISSNQAIDFRVRS 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225398|ref|NP_182030.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] gi|26452204|dbj|BAC43190.1| putative metalloproteinase [Arabidopsis thaliana] gi|31711730|gb|AAP68221.1| At2g45040 [Arabidopsis thaliana] gi|330255405|gb|AEC10499.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana]

 Score =  317 bits (811), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 177/215 (82%), Gaps = 1/215 (0%)

Query: 38  DKYDPAEATRHK-KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFS 96
           D  +P  A  H  K YV FPG+PRWTR VP+ L+YAFS+EN+  YL  TDI+ VF+RAF 
Sbjct: 110 DDVEPKTAPFHTGKKYVYFPGRPRWTRDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFG 169

Query: 97  KWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAE 156
           KWASVIPVSFIET+DY  ADI+IGF+NGDHGDGEPFDGVLGVLAH+FSPE+G+ HLD AE
Sbjct: 170 KWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAE 229

Query: 157 TWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQ 216
           TWAVDF  EKS VAVDLESVAVHEIGH+LGL HS VK+A MYPTLKPR KKV+L +DD+ 
Sbjct: 230 TWAVDFDEEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVV 289

Query: 217 GVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSS 251
           GVQ+LYG+NPNFT+ SL+ S+ STNLA   RI+S 
Sbjct: 290 GVQSLYGTNPNFTLNSLLASETSTNLADGSRIRSQ 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495960|ref|XP_003635123.1| PREDICTED: metalloendoproteinase 1-like [Vitis vinifera]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 185/239 (77%), Gaps = 12/239 (5%)

Query: 20  SPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMI 79
           SP+C    +TP          +    TRH   +  F GKPRW R  PMTL+Y+FS+ENMI
Sbjct: 64  SPRCGVSDTTP---------LEDVHETRH---FAYFYGKPRWARVPPMTLTYSFSRENMI 111

Query: 80  NYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVL 139
             L+ +++K+VF+RAFS+WASVIPV+F ET+D+  ADI+IGFY+GDHGDGEPFDGVLGVL
Sbjct: 112 ESLNSSEMKSVFERAFSRWASVIPVNFTETEDFGSADIKIGFYSGDHGDGEPFDGVLGVL 171

Query: 140 AHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYP 199
           AH+FSP++G+FH D AETW VDF SEKS VAVDLESVA HEIGH+LGL HS VKEAVMYP
Sbjct: 172 AHAFSPQNGRFHFDRAETWTVDFESEKSRVAVDLESVATHEIGHILGLAHSSVKEAVMYP 231

Query: 200 TLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMML 258
           +L PR KKVDL  DD++GVQALYG NPNF   SL+ESDIS+N AV L+I+ S WAT ++
Sbjct: 232 SLSPRRKKVDLKRDDVEGVQALYGPNPNFKFSSLMESDISSNRAVGLQIRPSKWATTLV 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824541|ref|XP_002880153.1| matrix metalloproteinase [Arabidopsis lyrata subsp. lyrata] gi|297325992|gb|EFH56412.1| matrix metalloproteinase [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/216 (69%), Positives = 177/216 (81%), Gaps = 1/216 (0%)

Query: 38  DKYDPAEATRHK-KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFS 96
           D  +P  A  H  K YV FPG+PRWTR VP+ L+YAFS+EN+  YL  TDI+ VF+RAF 
Sbjct: 103 DDVEPKTAPFHTGKKYVYFPGRPRWTRDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFG 162

Query: 97  KWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAE 156
           KWASVIPV+FIET+DY  ADI+IGF+NGDHGDGEPFDGVLGVLAH+FSPE+G+ HLD AE
Sbjct: 163 KWASVIPVTFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAE 222

Query: 157 TWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQ 216
           TWAVDF  EKS VAVDLESVAVHEIGH+LGL HS VK+A MYPTLKPR KKV+L +DD+ 
Sbjct: 223 TWAVDFNEEKSTVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVV 282

Query: 217 GVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSM 252
           GVQ+LYG+NPNFT+ SL+ S+ STNLA D  ++ S 
Sbjct: 283 GVQSLYGTNPNFTLSSLLASETSTNLADDGSMRRSQ 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3128477|gb|AAC31167.1| metalloproteinase [Arabidopsis thaliana]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/215 (70%), Positives = 177/215 (82%), Gaps = 2/215 (0%)

Query: 38  DKYDPAEATRHK-KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFS 96
           D  +P  A  H  K YV FPG+PRWTR VP+ L+YAFS+EN+  YL  TDI+ VF+RAF 
Sbjct: 110 DDVEPKTAPFHTGKKYVYFPGRPRWTRDVPLKLTYAFSQENLTPYLAPTDIR-VFRRAFG 168

Query: 97  KWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAE 156
           +WASVIPVSFIET+DY  ADI+IGF+NGDHGDGEPFDGVLGVLAH+FSPE+G+ HLD AE
Sbjct: 169 EWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAE 228

Query: 157 TWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQ 216
           TWAVDF  EKS VAVDLESVAVHEIGH+LGL HS VK+A MYPTLKPR KKV+L +DD+ 
Sbjct: 229 TWAVDFDEEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVV 288

Query: 217 GVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSS 251
           GVQ+LYG+NPNFT+ SL+ S+ STNLA   RI+S 
Sbjct: 289 GVQSLYGTNPNFTLNSLLASETSTNLADGSRIRSQ 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773502|emb|CAN66781.1| hypothetical protein VITISV_013507 [Vitis vinifera]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 180/232 (77%), Gaps = 12/232 (5%)

Query: 20  SPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMI 79
           SP+C    +TP          +    TRH   +  F GKPRW R  PMTL+Y+FS+ENMI
Sbjct: 116 SPRCGVSDTTP---------LEDVHETRH---FAYFYGKPRWARVPPMTLTYSFSRENMI 163

Query: 80  NYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVL 139
             L+ +++K+VF+RAFS+WASVIPV+F ET+D+  ADI+IGFY+GDHGDGEPFDGVLGVL
Sbjct: 164 ESLNSSEMKSVFERAFSRWASVIPVNFTETEDFGSADIKIGFYSGDHGDGEPFDGVLGVL 223

Query: 140 AHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYP 199
           AH+FSP++G+FH D AETW VDF SEKS VA+DLESVA HEIGH+LGL HS VKEAVMYP
Sbjct: 224 AHAFSPQNGRFHFDRAETWTVDFESEKSRVAIDLESVATHEIGHILGLAHSSVKEAVMYP 283

Query: 200 TLKPRDKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSS 251
           +L PR KKVDL  DD++GVQALYG NPNF   SL+ESDIS+N AV L+I+ S
Sbjct: 284 SLSPRRKKVDLKRDDVEGVQALYGPNPNFKFSSLMESDISSNRAVGLQIRPS 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523082|ref|XP_003530171.1| PREDICTED: metalloendoproteinase 1-like [Glycine max]

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 167/196 (85%)

Query: 46  TRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVS 105
           TR  K++V FPGKPRW+R +PMTL+YAFS+ENMI+ L + +I+  F+RAF++WASVIPVS
Sbjct: 141 TRLTKNFVFFPGKPRWSRSMPMTLTYAFSRENMIHSLSMKEIREAFQRAFTRWASVIPVS 200

Query: 106 FIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSE 165
           F+E  D++  DI+IGFYNG+HGDGEPFDGVLGVLAHSFSPE G+ HLDAAETWAVDF S 
Sbjct: 201 FVEVSDFELTDIKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRST 260

Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
            S VAVDLESVA HEIGHLLGL+HS VKEAVMYP+L+PRDK+ DL +DDI+GVQ+LYGSN
Sbjct: 261 TSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSN 320

Query: 226 PNFTIGSLVESDISTN 241
           PNF     +ESD+S N
Sbjct: 321 PNFRSEWSLESDMSAN 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2055605	342	AT2G45040 [Arabidopsis thalian	0.816	0.622	0.710	7.4e-82
TAIR|locus:2130928	364	AT4G16640 [Arabidopsis thalian	0.708	0.508	0.619	3.5e-59
TAIR|locus:2020548	378	MMP "matrix metalloproteinase"	0.666	0.460	0.576	5.6e-52
TAIR|locus:2032467	384	AT1G24140 [Arabidopsis thalian	0.678	0.460	0.529	7.7e-48
TAIR|locus:2025891	360	AT1G59970 [Arabidopsis thalian	0.670	0.486	0.524	1.4e-46
UNIPROTKB|O60882	483	MMP20 "Matrix metalloproteinas	0.636	0.343	0.406	3.4e-29
UNIPROTKB|P79287	483	MMP20 "Matrix metalloproteinas	0.639	0.345	0.398	5.9e-29
UNIPROTKB|F1SV69	468	MMP8 "Uncharacterized protein"	0.628	0.350	0.406	2.2e-28
UNIPROTKB|E2RMU9	483	MMP20 "Uncharacterized protein	0.616	0.333	0.406	3e-28
MGI|MGI:1353466	482	Mmp20 "matrix metallopeptidase	0.636	0.344	0.390	3.8e-28

TAIR|locus:2055605 AT2G45040 [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 152/214 (71%), Positives = 177/214 (82%)

Query:    38 DKYDPAEATRHK-KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFS 96
             D  +P  A  H  K YV FPG+PRWTR VP+ L+YAFS+EN+  YL  TDI+ VF+RAF 
Sbjct:   110 DDVEPKTAPFHTGKKYVYFPGRPRWTRDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFG 169

Query:    97 KWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAE 156
             KWASVIPVSFIET+DY  ADI+IGF+NGDHGDGEPFDGVLGVLAH+FSPE+G+ HLD AE
Sbjct:   170 KWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAE 229

Query:   157 TWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQ 216
             TWAVDF  EKS VAVDLESVAVHEIGH+LGL HS VK+A MYPTLKPR KKV+L +DD+ 
Sbjct:   230 TWAVDFDEEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVV 289

Query:   217 GVQALYGSNPNFTIGSLVESDISTNLAVDLRIKS 250
             GVQ+LYG+NPNFT+ SL+ S+ STNLA   RI+S
Sbjct:   290 GVQSLYGTNPNFTLNSLLASETSTNLADGSRIRS 323

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2130928 AT4G16640 [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 117/189 (61%), Positives = 142/189 (75%)

Query:    52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
             Y  F GKP+W R    TL+YA SK + ++YL   D+K VF+RAFS+W+SVIPVSF E DD
Sbjct:   150 YTYFNGKPKWNRD---TLTYAISKTHKLDYLTSEDVKTVFRRAFSQWSSVIPVSFEEVDD 206

Query:   112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSE-KSPVA 170
             +  AD++IGFY GDHGDG PFDGVLG LAH+F+PE+G+ HLDAAETW VD   +  S VA
Sbjct:   207 FTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLDAAETWIVDDDLKGSSEVA 266

Query:   171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTI 230
             VDLESVA HEIGHLLGL HS  + AVMYP+L+PR KKVDL +DD+ GV  LYG NP   +
Sbjct:   267 VDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTVDDVAGVLKLYGPNPKLRL 326

Query:   231 GSLVESDIS 239
              SL +S+ S
Sbjct:   327 DSLTQSEDS 335

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2020548 MMP "matrix metalloproteinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 105/182 (57%), Positives = 131/182 (71%)

Query:    50 KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIET 109
             K Y LFPG+PRW R+    L+YAF  +N +      ++K+VF RAF +W+ V  ++F  +
Sbjct:   153 KRYTLFPGEPRWPRN-RRDLTYAFDPKNPLT----EEVKSVFSRAFGRWSDVTALNFTLS 207

Query:   110 DDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAV--DFGSEKS 167
             + +  +DI IGFY GDHGDGEPFDGVLG LAH+FSP SGKFHLDA E W V  D  S  S
Sbjct:   208 ESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLDADENWVVSGDLDSFLS 267

Query:   168 -PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNP 226
                AVDLESVAVHEIGHLLGL HS V+E++MYPT+    +KVDL  DD++G+Q LYG+NP
Sbjct:   268 VTAAVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDLTNDDVEGIQYLYGANP 327

Query:   227 NF 228
             NF
Sbjct:   328 NF 329

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2032467 AT1G24140 [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 99/187 (52%), Positives = 128/187 (68%)

Query:    50 KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIET 109
             K Y  FPG+PRW R+    L+YAF   N +      ++K+VF RAF++W  V P++F   
Sbjct:   157 KHYSFFPGEPRWPRN-RRDLTYAFDPRNALT----EEVKSVFSRAFTRWEEVTPLTFTRV 211

Query:   110 DDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAV--DFGSEKS 167
             + +  +DI IGFY+G+HGDGEPFDG +  LAH+FSP +G FHLD  E W V  + G    
Sbjct:   212 ERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLDGEENWIVSGEGGDGFI 271

Query:   168 PV--AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
              V  AVDLESVAVHEIGHLLGL HS V+ ++MYPT++   +KVDL  DD++GVQ LYG+N
Sbjct:   272 SVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVDLTTDDVEGVQYLYGAN 331

Query:   226 PNFTIGS 232
             PNF  GS
Sbjct:   332 PNFN-GS 337

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2025891 AT1G59970 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 98/187 (52%), Positives = 129/187 (68%)

Query:    47 RHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITD-IKAVFKRAFSKWASVIPVS 105
             R  + Y  FPGKPRW +     L+YAF+ +N     ++TD +K VF RAF++WA V P++
Sbjct:   138 RTTEKYSFFPGKPRWPKR-KRDLTYAFAPQN-----NLTDEVKRVFSRAFTRWAEVTPLN 191

Query:   106 FIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFG-- 163
             F  ++    ADI IGF++G+HGDGEPFDG +G LAH+ SP +G  HLD  E W +  G  
Sbjct:   192 FTRSESILRADIVIGFFSGEHGDGEPFDGAMGTLAHASSPPTGMLHLDGDEDWLISNGEI 251

Query:   164 SEKS-PVA--VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQA 220
             S +  PV   VDLESVAVHEIGHLLGL HS V++A+M+P +   D+KV+LA DDI+G+Q 
Sbjct:   252 SRRILPVTTVVDLESVAVHEIGHLLGLGHSSVEDAIMFPAISGGDRKVELAKDDIEGIQH 311

Query:   221 LYGSNPN 227
             LYG NPN
Sbjct:   312 LYGGNPN 318

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|O60882 MMP20 "Matrix metalloproteinase-20" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 74/182 (40%), Positives = 102/182 (56%)

Query:    51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
             +Y LFPG+P+W ++   TL+Y  SK      +   ++    + A   W+S +P+SF+  +
Sbjct:   107 NYRLFPGEPKWKKN---TLTYRISKYTPS--MSSVEVDKAVEMALQAWSSAVPLSFVRIN 161

Query:   111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG---KFHLDAAETWAVDFGSEKS 167
               + ADI I F NGDHGD  PFDG  G LAH+F+P  G     H D AE W +  G+   
Sbjct:   162 SGE-ADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM--GTN-- 216

Query:   168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYGSNP 226
                 +L +VA HE GH LGL HS    A+MYPT K ++     L  DD++G+QALYG   
Sbjct:   217 --GFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYGPRK 274

Query:   227 NF 228
              F
Sbjct:   275 VF 276

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0097186 "amelogenesis" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005615 "extracellular space" evidence=TAS

GO:0070173 "regulation of enamel mineralization" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P79287 MMP20 "Matrix metalloproteinase-20" [Sus scrofa (taxid:9823)]

 Score = 323 (118.8 bits), Expect = 5.9e-29, P = 5.9e-29
 Identities = 73/183 (39%), Positives = 100/183 (54%)

Query:    51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
             +Y LFPG+P+W ++   TL+Y  SK      +   ++    + A   W+S +P+SF+  +
Sbjct:   107 NYRLFPGEPKWKKN---TLTYRISKYTPS--MTPAEVDKAMEMALQAWSSAVPLSFVRVN 161

Query:   111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG---KFHLDAAETWAVDFGSEKS 167
               + ADI I F  GDHGD  PFDG  G LAH+F+P  G     H D AE W +       
Sbjct:   162 AGE-ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGMNG--- 217

Query:   168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYGSNP 226
                 +L +VA HE GH LGL HS    A+MYPT K ++     L  DD++G+QALYG   
Sbjct:   218 ---FNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQNPYGFHLPKDDVKGIQALYGPRK 274

Query:   227 NFT 229
              FT
Sbjct:   275 TFT 277

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0097186 "amelogenesis" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|F1SV69 MMP8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 317 (116.6 bits), Expect = 2.2e-28, P = 2.2e-28
 Identities = 74/182 (40%), Positives = 98/182 (53%)

Query:    51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
             D++L PG P+W +    TL+Y   K      L  TD++++  +A   W+   P+ FI T 
Sbjct:   101 DFMLTPGNPKWKQ---TTLTYRIIKYTQ--QLPKTDVESIIAKALQLWSQASPLKFISTS 155

Query:   111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
             + + ADI+I F   DHGD  PFDG  G+LAH+F P     G  H DA ETW       K+
Sbjct:   156 EEE-ADIKIAFVQRDHGDNSPFDGPNGILAHAFQPGPGIGGDVHFDAEETWT------KT 208

Query:   168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV-DLALDDIQGVQALYG--S 224
                 +L  VA HE GH LGL+HS    A+MYP     +     L  DDI G+QA+YG  S
Sbjct:   209 SKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAFSEPSTYSLPQDDINGIQAIYGPSS 268

Query:   225 NP 226
             NP
Sbjct:   269 NP 270

GO:0006508 "proteolysis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|E2RMU9 MMP20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 3.0e-28, P = 3.0e-28
 Identities = 72/177 (40%), Positives = 97/177 (54%)

Query:    51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
             +Y LFPG+P+W ++   TL+Y  SK    + +   ++    + A   W S +P+SFI  +
Sbjct:   107 NYRLFPGEPKWKKN---TLTYRISKYT--SSMSPAEVDKAVEMALQAWGSAVPLSFIRVN 161

Query:   111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG---KFHLDAAETWAVDFGSEKS 167
               + ADI I F  GDHGD  PFDG  G LAH+F+P  G     H D AE W +       
Sbjct:   162 SGE-ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGMNG--- 217

Query:   168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
                 +L +VA HE GH LGL HS    A+MYPT K +      L  DD++G+QALYG
Sbjct:   218 ---FNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQHPYGFHLPKDDVKGIQALYG 271

GO:0097186 "amelogenesis" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

MGI|MGI:1353466 Mmp20 "matrix metallopeptidase 20 (enamelysin)" [Mus musculus (taxid:10090)]

 Score = 316 (116.3 bits), Expect = 3.8e-28, P = 3.8e-28
 Identities = 71/182 (39%), Positives = 103/182 (56%)

Query:    51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
             +Y LFPG+P+W +++   L+Y  SK      +  T++    + A   W++ +P++F+  +
Sbjct:   106 NYRLFPGEPKWKKNI---LTYRISKYTPS--MSPTEVDKAIQMALHAWSTAVPLNFVRIN 160

Query:   111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESG---KFHLDAAETWAVDFGSEKS 167
               + ADI I F  GDHGD  PFDG  G LAH+F+P  G     H D AE W +  G+   
Sbjct:   161 SGE-ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM--GTN-- 215

Query:   168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYGSNP 226
                 +L +VA HE GH LGL HS    A+MYPT K ++  +  L  DD++G+QALYG   
Sbjct:   216 --GFNLFTVAAHEFGHALGLGHSTDPSALMYPTYKYQNPYRFHLPKDDVKGIQALYGPRK 273

Query:   227 NF 228
              F
Sbjct:   274 IF 275

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0097186 "amelogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019156001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (291 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam00413	159	pfam00413, Peptidase_M10, Matrixin	5e-65
cd04278	157	cd04278, ZnMc_MMP, Zinc-dependent metalloprotease,	1e-62
smart00235	139	smart00235, ZnMc, Zinc-dependent metalloprotease	2e-23
cd04279	156	cd04279, ZnMc_MMP_like_1, Zinc-dependent metallopr	8e-17
cd04277	186	cd04277, ZnMc_serralysin_like, Zinc-dependent meta	4e-12
cd04268	165	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprot	1e-09
cd00203	167	cd00203, ZnMc, Zinc-dependent metalloprotease	8e-08
PRK13267	179	PRK13267, PRK13267, archaemetzincin-like protein;	1e-04
cd11375	173	cd11375, Peptidase_M54, Peptidase family M54, also	4e-04
COG1913	181	COG1913, COG1913, Predicted Zn-dependent proteases	6e-04
cd04327	198	cd04327, ZnMc_MMP_like_3, Zinc-dependent metallopr	0.002

>gnl|CDD|215908 pfam00413, Peptidase_M10, Matrixin

 Score =  199 bits (509), Expect = 5e-65
 Identities = 71/167 (42%), Positives = 91/167 (54%), Gaps = 11/167 (6%)

Query: 60  RWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRI 119
           +W +     L+Y          L   +++   +RAF  W+ V P++F E      ADI+I
Sbjct: 1   KWKKK---NLTYRIVNYT--PDLSRDEVRRAIRRAFKVWSEVTPLTFTEVPT-GTADIKI 54

Query: 120 GFYNGDHGDGEPFDGVLGVLAHSFSPES--GKFHLDAAETWAVDFGSEKSPVAVDLESVA 177
           GF  G+HGDG PFDG  GVLAH+F P    G  H D  E W V  G+   P   +L  VA
Sbjct: 55  GFGRGEHGDGYPFDGPGGVLAHAFFPGPIGGDIHFDDDEQWTV--GNSSGPEGTNLFLVA 112

Query: 178 VHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVD-LALDDIQGVQALYG 223
            HEIGH LGL HS   +A+MYP   P  K V  L  DDI+G+Q+LYG
Sbjct: 113 AHEIGHALGLGHSSDPDAIMYPYYSPYKKPVFRLDQDDIKGIQSLYG 159

The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Length = 159

>gnl|CDD|239805 cd04278, ZnMc_MMP, Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family

 Score =  193 bits (493), Expect = 1e-62
 Identities = 69/166 (41%), Positives = 88/166 (53%), Gaps = 11/166 (6%)

Query: 60  RWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRI 119
           +W++     L+Y          L   D++    RAF  W+ V P++F E      ADIRI
Sbjct: 1   KWSKT---NLTYRILNYP--PDLPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRI 55

Query: 120 GFYNGDHGDGEPFDGVLGVLAHSFSP--ESGKFHLDAAETWAVDFGSEKSPVAVDLESVA 177
            F  G+HGDG PFDG  G LAH+F P    G  H D  E W +   S       DL SVA
Sbjct: 56  SFARGNHGDGYPFDGPGGTLAHAFFPGGIGGDIHFDDDEQWTLGSDSG----GTDLFSVA 111

Query: 178 VHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
            HEIGH LGL HS   +++MYP  +    K  L+ DDI+G+QALYG
Sbjct: 112 AHEIGHALGLGHSSDPDSIMYPYYQGPVPKFKLSQDDIRGIQALYG 157

MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases). Length = 157

>gnl|CDD|214576 smart00235, ZnMc, Zinc-dependent metalloprotease

 Score = 92.0 bits (229), Expect = 2e-23
 Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 37/172 (21%)

Query: 57  GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           G  +W +    T+ Y     ++         +    +A ++W+ V  + F+E      AD
Sbjct: 1   GSKKWPKG---TVPYVIDSSSLSPE-----EREAIAKALAEWSDVTCIRFVERTGT--AD 50

Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESV 176
           I I F +GD G           L+H+  P  G  HL       ++ G            V
Sbjct: 51  IYISFGSGDSG---CT------LSHAGRP-GGDQHLSL-GNGCINTG------------V 87

Query: 177 AVHEIGHLLGLTHSPVKEA---VMYPTLKPRD-KKVDLALDDIQGVQALYGS 224
           A HE+GH LGL H   +      MY      D +  DL+ DD  G+   YGS
Sbjct: 88  AAHELGHALGLYHEQSRSDRDNYMYINYTNIDTRNFDLSEDDSLGIPYDYGS 139

Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site. Length = 139

>gnl|CDD|239806 cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1

 Score = 75.2 bits (185), Expect = 8e-17
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 92  KRAFSKWASVIPVSFIETDDYDF-ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF 150
           K+A ++W +V P+ F+   + D  ADI I           P  G  G LA +  P     
Sbjct: 27  KQAAAEWENVGPLKFVYNPEEDNDADIVI-----FFDRPPPVGGAGGGLARAGFPLISDG 81

Query: 151 HLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH-SPVKEAVMYPTLKPR-DKKV 208
           +        ++ G  +   A +L+++A+HE+GH LGL H S   E  MYP+     D   
Sbjct: 82  NRKLFNRTDINLGPGQPRGAENLQAIALHELGHALGLWHHSDRPEDAMYPSQGQGPDGNP 141

Query: 209 DLALDDIQGVQALYG 223
            L+  D+  ++ LYG
Sbjct: 142 TLSARDVATLKRLYG 156

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin. Length = 156

>gnl|CDD|239804 cd04277, ZnMc_serralysin_like, Zinc-dependent metalloprotease, serralysin_like subfamily

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 29/140 (20%)

Query: 68  TLSYAFSK-------------ENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
           TL+Y+FS              +           +A  + A   W  V  + F+E  D   
Sbjct: 3   TLTYSFSNTGGPYSYGYGREEDTTNTAALSAAQQAAARDALEAWEDVADIDFVEVSDNSG 62

Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLE 174
           ADIR G  +   G             +++ P SG       + W   F S     +    
Sbjct: 63  ADIRFGNSSDPDG---------NTAGYAYYPGSGSGTAYGGDIW---FNSSYDTNSDSPG 110

Query: 175 S----VAVHEIGHLLGLTHS 190
           S      +HEIGH LGL H 
Sbjct: 111 SYGYQTIIHEIGHALGLEHP 130

Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides. Length = 186

>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 30/159 (18%)

Query: 86  DIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP 145
            ++A    A   W     + F   +D D ADIR         +    DG          P
Sbjct: 15  KLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYN----DGTWSYGPSQVDP 70

Query: 146 ESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS--------------- 190
            +G+  L     ++       +     L + A HE+GH LGL H+               
Sbjct: 71  LTGEILLARVYLYSSFVEYSGA----RLRNTAEHELGHALGLRHNFAASDRDDNVDLLAE 126

Query: 191 -PVKEAVMYPT------LKPRDKKVDLALDDIQGVQALY 222
                +VM              +K  +   DI  ++ LY
Sbjct: 127 KGDTSSVMDYAPSNFSIQLGDGQKYTIGPYDIAAIKKLY 165

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases. Length = 165

>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 32/181 (17%), Positives = 48/181 (26%), Gaps = 37/181 (20%)

Query: 65  VPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD-DYDFADIRIGFYN 123
             +         ++        I+++   A   W   + + F+    + D ADI I    
Sbjct: 1   KVIPYVVVADDRDVEEENLSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTR 60

Query: 124 GDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGH 183
            D   G    G    L        G            D  S     A        HE+GH
Sbjct: 61  QDFDGG---TGGWAYLGRVCDSLRG-------VGVLQDNQSGTKEGAQ----TIAHELGH 106

Query: 184 LLGLTHSPVKEA--------------------VMYPTLKPRDK--KVDLALDDIQGVQAL 221
            LG  H   ++                     VM  T        + D +  DI  +  L
Sbjct: 107 ALGFYHDHDRKDRDDYPTIDDTLNAEDDDYYSVMSYTKGSFSDGQRKDFSQCDIDQINKL 166

Query: 222 Y 222
           Y
Sbjct: 167 Y 167

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease. Length = 167

>gnl|CDD|237325 PRK13267, PRK13267, archaemetzincin-like protein; Reviewed

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 162 FGSEKSPVAVDLESV---AVHEIGHLLGLTHSPVKEAVMY--PTLKPRDKK 207
           F   K    +  E V     HE+GH LGL H      VM    +++  D K
Sbjct: 111 FYGNKPDSELFEERVRKEVTHELGHTLGLEHCDNPRCVMNFSNSVRDVDIK 161

Length = 179

>gnl|CDD|213029 cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPT 200
            AVHE+GHL GL H P    VM  +
Sbjct: 126 EAVHELGHLFGLDHCPYYACVMNFS 150

Peptidase M54 (archaemetzincin or archaelysin) is a zinc-dependent aminopeptidase that contains the consensus zinc-binding sequence HEXXHXXGXXH/D and a conserved Met residue at the active site, and is thus classified as a metzincin. Archaemetzincins, first identified in archaea, are also found in bacteria and eukaryotes, including two human members, archaemetzincin-1 and -2 (AMZ1 and AMZ2). AMZ1 is mainly found in the liver and heart while AMZ2 is primarily expressed in testis and heart; both have been reported to degrade synthetic substrates and peptides. The Peptidase M54 family contains an extended metzincin concensus sequence of HEXXHXXGX3CX4CXMX17CXXC such that a second zinc ion is bound to four cysteines, thus resembling a zinc finger. Phylogenetic analysis of this family reveals a complex evolutionary process involving a series of lateral gene transfer, gene loss and genetic duplication events. Length = 173

>gnl|CDD|224825 COG1913, COG1913, Predicted Zn-dependent proteases [General function prediction only]

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 177 AVHEIGHLLGLTHSPVKEAVMYP--TLKPRDKK 207
            +HE+GHLLGL+H P    VM    +L+  D+K
Sbjct: 128 VLHELGHLLGLSHCPNPRCVMNFSNSLRDVDRK 160

Length = 181

>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like sub-family 3

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 28/124 (22%)

Query: 85  TDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDG--VLGVLAHS 142
             +K   + A  +W     + F    D D ADIRI F  GD      + G   L + A +
Sbjct: 19  AFLKDKVRAAAREWLPYANLKFKFVTDAD-ADIRISFTPGD--GYWSYVGTDALLIGADA 75

Query: 143 FSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH---SPV------K 193
            +   G         W  D   +      +   V +HE GH LG  H   SP       K
Sbjct: 76  PTMNLG---------WFTDDTPDP-----EFSRVVLHEFGHALGFIHEHQSPAANIPWDK 121

Query: 194 EAVM 197
           EAV 
Sbjct: 122 EAVY 125

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG1565	469	consensus Gelatinase A and related matrix metallop	100.0
cd04278	157	ZnMc_MMP Zinc-dependent metalloprotease, matrix me	100.0
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	100.0
cd04279	156	ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM	99.96
smart00235	140	ZnMc Zinc-dependent metalloprotease. Neutral zinc	99.92
cd04277	186	ZnMc_serralysin_like Zinc-dependent metalloproteas	99.91
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	99.91
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	99.74
cd00203	167	ZnMc Zinc-dependent metalloprotease. This super-fa	99.73
cd04276	197	ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MM	99.61
cd04280	180	ZnMc_astacin_like Zinc-dependent metalloprotease,	99.57
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400	191	Astacin: Astacin (Peptidase family M12A) This Pros	99.54
cd04281	200	ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1	99.54
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	99.52
cd04282	230	ZnMc_meprin Zinc-dependent metalloprotease, meprin	99.44
cd04283	182	ZnMc_hatching_enzyme Zinc-dependent metalloproteas	99.4
KOG3714	411	consensus Meprin A metalloprotease [Posttranslatio	99.35
PF02031	132	Peptidase_M7: Streptomyces extracellular neutral p	99.19
COG5549	236	Predicted Zn-dependent protease [Posttranslational	98.94
PF11350	203	DUF3152: Protein of unknown function (DUF3152); In	98.33
cd04267	192	ZnMc_ADAM_like Zinc-dependent metalloprotease, ADA	97.98
cd04273	207	ZnMc_ADAMTS_like Zinc-dependent metalloprotease, A	97.96
PF13583	206	Reprolysin_4: Metallo-peptidase family M12B Reprol	97.91
PF05572	154	Peptidase_M43: Pregnancy-associated plasma protein	97.68
PF13574	173	Reprolysin_2: Metallo-peptidase family M12B Reprol	97.54
cd04275	225	ZnMc_pappalysin_like Zinc-dependent metalloproteas	97.44
COG1913	181	Predicted Zn-dependent proteases [General function	97.38
PF13688	196	Reprolysin_5: Metallo-peptidase family M12; PDB: 2	97.32
PF13582	124	Reprolysin_3: Metallo-peptidase family M12B Reprol	97.23
cd04271	228	ZnMc_ADAM_fungal Zinc-dependent metalloprotease, A	97.18
PRK13267	179	archaemetzincin-like protein; Reviewed	97.14
cd04269	194	ZnMc_adamalysin_II_like Zinc-dependent metalloprot	97.07
PF07998	194	Peptidase_M54: Peptidase family M54; InterPro: IPR	96.91
PF01421	199	Reprolysin: Reprolysin (M12B) family zinc metallop	96.46
cd04270	244	ZnMc_TACE_like Zinc-dependent metalloprotease; TAC	96.33
cd04272	220	ZnMc_salivary_gland_MPs Zinc-dependent metalloprot	95.98
KOG4525	614	consensus Jacalin-like lectin domain-containing pr	95.48
PF11150	213	DUF2927: Protein of unknown function (DUF2927); In	95.03
PF04298	222	Zn_peptidase_2: Putative neutral zinc metallopepti	94.63
PF10462	305	Peptidase_M66: Peptidase M66; InterPro: IPR019503	94.59
PF05548	314	Peptidase_M11: Gametolysin peptidase M11; InterPro	94.47
PF12044	423	Metallopep: Putative peptidase family; InterPro: I	93.87
TIGR03296	286	M6dom_TIGR03296 M6 family metalloprotease domain.	93.46
COG2738	226	Predicted Zn-dependent protease [General function	93.27
PTZ00337	567	surface protease GP63; Provisional	92.63
PTZ00257	622	Glycoprotein GP63 (leishmanolysin); Provisional	92.46
COG3824	136	Predicted Zn-dependent protease [General function	91.42
PF01457	521	Peptidase_M8: Leishmanolysin This Prosite motif co	91.41
PF05547	645	Peptidase_M6: Immune inhibitor A peptidase M6; Int	88.8
KOG3607	716	consensus Meltrins, fertilins and related Zn-depen	87.96
PF09471	264	Peptidase_M64: IgA Peptidase M64; InterPro: IPR019	86.61
PF06262	97	DUF1025: Possibl zinc metallo-peptidase; InterPro:	85.79
KOG3658	764	consensus Tumor necrosis factor-alpha-converting e	84.1
COG4783	484	Putative Zn-dependent protease, contains TPR repea	82.85

>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]

Probab=100.00  E-value=3.2e-48  Score=370.50  Aligned_cols=187  Identities=43%  Similarity=0.787  Sum_probs=172.2

Q ss_pred             HHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHH
Q 043639           12 IFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVF   91 (261)
Q Consensus        12 ~~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i   91 (261)
                      -.|+..|++|||||||.                   |   |++++++.||.+.   +|||+|.  |++++++..+++.++
T Consensus        79 ~~Tl~~m~~prCgvpd~-------------------~---~~~~~~~~kW~k~---~lT~ri~--n~~~~l~~~~vr~~~  131 (469)
T KOG1565|consen   79 NATLALMNKPRCGVPDG-------------------R---YRYFPGKPKWNKE---HLTYRIK--NYTPYLPQAEVRCAK  131 (469)
T ss_pred             hhhhhhccCCCcCCCCC-------------------c---cccCcccCccccc---ccceecc--ccCCCCCHHHHHHHH
Confidence            46889999999999991                   2   6778899999999   9999999  678899999999999


Q ss_pred             HHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC---CceeeecccccccccCCCCCCC
Q 043639           92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP  168 (261)
Q Consensus        92 ~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~  168 (261)
                      ++||+.|+++++|+|+|+.....|||+|.|..+.|||++||||++|+|||||+|+   .|++|||++|.|+++.     .
T Consensus       132 ~~Af~~Ws~vtpl~f~e~~~~~~aDi~i~F~~~~h~d~~PFDG~~g~laHAf~Pg~~~~G~~hfD~dE~Wt~~~-----~  206 (469)
T KOG1565|consen  132 SEAFKLWSDVTPLTFQEVKEEGEADIRISFFPGDHGDGFPFDGPGGVLAHAFFPGPGIGGDLHFDKDETWTYGD-----S  206 (469)
T ss_pred             HHHHhhcccCCCCccccCCCCCCCceeeeeeccCCCCCCcccCCCCceecccCCCCCCCCccccCcccceeccC-----C
Confidence            9999999999999999999778999999999999999999999999999999995   6899999999999862     2


Q ss_pred             ccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhCCCCCCCC
Q 043639          169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTI  230 (261)
Q Consensus       169 ~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~~~~~~~  230 (261)
                      .+++|+.||+|||||+|||.||.++++||||+|++...++.|++|||.+||.|||.+++...
T Consensus       207 ~g~~l~~Va~HEiGH~LGL~HS~~~~aiM~P~y~~~~~~~~L~~DDv~giq~lYG~~~~~~~  268 (469)
T KOG1565|consen  207 NGVDLFLVAAHEIGHALGLGHSSDPDAIMYPFYQPDSGNFDLSQDDVRGIQHLYGGPPRDYF  268 (469)
T ss_pred             ccchhHHHhhhhcccccccCCCCCcccccccccccCCCCcccChhhhhhhHHHhCCCccccc
Confidence            48999999999999999999999999999999997667889999999999999999887543

>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family

Probab=100.00  E-value=3.5e-38  Score=262.12  Aligned_cols=155  Identities=44%  Similarity=0.761  Sum_probs=138.0

Q ss_pred             cccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCce
Q 043639           60 RWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVL  139 (261)
Q Consensus        60 kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~l  139 (261)
                      ||+++   +|||+|..  ..+.++...++++|++||+.|+++++|+|+|+.+...|||+|.|....++++.+|+|.+|++
T Consensus         1 kW~~~---~itY~i~~--~~~~~~~~~~~~~i~~A~~~W~~~~~l~F~e~~~~~~adi~I~~~~~~~~~~~~~~~~~g~l   75 (157)
T cd04278           1 KWSKT---NLTYRILN--YPPDLPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGTL   75 (157)
T ss_pred             CCCCC---ceeEEEEC--CCCCCCHHHHHHHHHHHHHHHHhhcCceeEEcccCCCCCEEEEEeecccCCCCCCCCCcccc
Confidence            79999   99999974  34446678999999999999999999999999875589999999998888889999999999


Q ss_pred             eeecCC--CCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHHHH
Q 043639          140 AHSFSP--ESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQG  217 (261)
Q Consensus       140 AhA~~P--~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI~~  217 (261)
                      +||++|  ..|+++||.++.|.....    ..+.+++.|++|||||+|||.|+.++++||||+|.+......|+++||.+
T Consensus        76 ~~a~~p~~~~g~i~~~~~~~~~~~~~----~~~~~~~~~~~HEiGHaLGL~H~~~~~~vM~~~~~~~~~~~~l~~~D~~~  151 (157)
T cd04278          76 AHAFFPGGIGGDIHFDDDEQWTLGSD----SGGTDLFSVAAHEIGHALGLGHSSDPDSIMYPYYQGPVPKFKLSQDDIRG  151 (157)
T ss_pred             ccccCCCCcceeEEECCCcccccCCC----CccchHHHHHHHHhccccccCCCCCCcCeecccccCCCcCCCCCHHHHHH
Confidence            999999  679999999999987541    23678999999999999999999999999999998643467899999999


Q ss_pred             HHHHhC
Q 043639          218 VQALYG  223 (261)
Q Consensus       218 iq~LYG  223 (261)
                      ||+|||
T Consensus       152 ~~~lYg  157 (157)
T cd04278         152 IQALYG  157 (157)
T ss_pred             HHHhcC
Confidence            999998

MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=100.00  E-value=8.7e-37  Score=251.27  Aligned_cols=151  Identities=44%  Similarity=0.810  Sum_probs=134.9

Q ss_pred             cccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCce
Q 043639           60 RWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVL  139 (261)
Q Consensus        60 kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~l  139 (261)
                      ||+++   +|||+|...  .+.++.+++++++++||+.|+++++|+|+|+.+ ..+||+|.|....+++...|++.++++
T Consensus         1 ~W~~~---~ity~i~~~--~~~~~~~~~~~~i~~A~~~W~~~~~~~F~~~~~-~~adi~i~~~~~~~~~~~~~~~~~~~~   74 (154)
T PF00413_consen    1 KWPKK---TITYSISNT--TPQLSQSEQRDAIRQAFQAWNDVAPLNFTEVSD-GNADIRISFGSNNHGDGYSFDGSGGTL   74 (154)
T ss_dssp             SSSSS---EEEEEESSB--CTTS-HHHHHHHHHHHHHHHHTTSSEEEEEESS-SSCSEEEEEESSSSSSSS-CSSSSSES
T ss_pred             CCCCC---cEEEEEECC--CCCCCHHHHHHHHHHHHHHHHhcCCceEEeccC-CCcceeeeeeccccCcccccccceeee
Confidence            79999   999999854  466778899999999999999999999999985 579999999998888888999999999


Q ss_pred             eeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHHH
Q 043639          140 AHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQ  216 (261)
Q Consensus       140 AhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI~  216 (261)
                      ++++.|.   .|+++|+.++.|....      ...+++.|++|||||+|||.|++++++||||.+.+.. ...|+.+||+
T Consensus        75 ~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~~-~~~l~~~Di~  147 (154)
T PF00413_consen   75 AHAYFPNNIVSGDIHFNDDESWTIDD------SGNDLQSVAIHEIGHALGLDHSNDPNSVMYPYYRGPD-NKTLSEDDID  147 (154)
T ss_dssp             EEEEESSSTTTTEEEEETTSHEESSS------SSEEHHHHHHHHHHHHTTBESSSSTTSTTSSSCTSSS-STSTTHHHHH
T ss_pred             eccccccccccccccccccccchhhh------hhhhhhhhhhhccccccCcCcCCCcccceeeecccCC-CCCCCHHHHH
Confidence            9999997   6999999999998652      3678899999999999999999999999999998654 2489999999


Q ss_pred             HHHHHhC
Q 043639          217 GVQALYG  223 (261)
Q Consensus       217 ~iq~LYG  223 (261)
                      +||+|||
T Consensus       148 ~i~~lYg  154 (154)
T PF00413_consen  148 GIQYLYG  154 (154)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9999998

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1

Probab=99.96  E-value=2.9e-29  Score=208.26  Aligned_cols=150  Identities=25%  Similarity=0.307  Sum_probs=114.8

Q ss_pred             eeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCC-CCcceEEEeeecCCCCCCCccCCCCceeeecCC
Q 043639           67 MTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY-DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP  145 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~-~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P  145 (261)
                      ..|+|++...+..++-....++++|++||+.|+++++|+|+++... ..+||+|.|....     +|+|.|+++|||++|
T Consensus         2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F~~~~~~~~~adi~I~f~~~~-----~~~~~g~~~a~a~~p   76 (156)
T cd04279           2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKFVYNPEEDNDADIVIFFDRPP-----PVGGAGGGLARAGFP   76 (156)
T ss_pred             CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCCcEEEEecCCC-----CCCCCCCceEEeccc
Confidence            3799999865332222356799999999999999999999998753 3899999998632     788999999999999


Q ss_pred             CCceeeecccccccccCCCCC--CCccccchhhhhhhhhhhcCCCCCCCCC-CccccccCCCC-CCCCCCHHHHHHHHHH
Q 043639          146 ESGKFHLDAAETWAVDFGSEK--SPVAVDLESVAVHEIGHLLGLTHSPVKE-AVMYPTLKPRD-KKVDLALDDIQGVQAL  221 (261)
Q Consensus       146 ~~G~vhfd~~e~wt~~~~~~~--~~~~~~l~~Va~HEiGHaLGL~Hs~~~~-svM~p~y~~~~-~~~~l~~dDI~~iq~L  221 (261)
                      ..|.  ++....|........  ...+.+++.|++|||||+|||.|++++. ++|||++.... .+..|+++|+++||.|
T Consensus        77 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~~~~~~siM~p~~~~~~~~~~~l~~~D~~~i~~l  154 (156)
T cd04279          77 LISD--GNRKLFNRTDINLGPGQPRGAENLQAIALHELGHALGLWHHSDRPEDAMYPSQGQGPDGNPTLSARDVATLKRL  154 (156)
T ss_pred             ccCC--CcccccccceEeecCCcCccchHHHHHHHHHhhhhhcCCCCCCCccceeeeecccCCcCcCCCCHHHHHHHHHH
Confidence            7543  333333322211000  0125678999999999999999999998 99999988642 3468999999999999


Q ss_pred             hC
Q 043639          222 YG  223 (261)
Q Consensus       222 YG  223 (261)
                      ||
T Consensus       155 Y~  156 (156)
T cd04279         155 YG  156 (156)
T ss_pred             hC
Confidence            97

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>smart00235 ZnMc Zinc-dependent metalloprotease

Probab=99.92  E-value=1e-24  Score=177.55  Aligned_cols=136  Identities=32%  Similarity=0.548  Sum_probs=109.8

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      ..+|++.   +|+|+|..    +.++..+++++|++||+.|+++++|+|+|+.+  .+||.|.|...+++        |.
T Consensus         2 ~~~W~~~---~v~Y~i~~----~~~~~~~~~~~i~~A~~~w~~~t~i~F~e~~~--~ad~~I~f~~~~~~--------g~   64 (140)
T smart00235        2 SKKWPKG---TVPYVIDS----SSLSPEEVREAIARAFAEWSDVTCLRFVERTS--TADIYISFGKGDGS--------GC   64 (140)
T ss_pred             CCcCCCC---cEEEEEcC----CCCCHHHHHHHHHHHHHHHhcCCeeEEEECCC--CCCeEEEEEECCCC--------Cc
Confidence            4689998   99999962    23445556999999999999999999999874  79999999986541        11


Q ss_pred             ceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCC---ccccccCCCCCCCCCCHHH
Q 043639          138 VLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEA---VMYPTLKPRDKKVDLALDD  214 (261)
Q Consensus       138 ~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~s---vM~p~y~~~~~~~~l~~dD  214 (261)
                      .+++++.| .|+.+++. +.|..            ...|++|||||+|||.|++++.+   +|++.|......+.++++|
T Consensus        65 ~~a~~g~~-~g~~~~~~-~~~~~------------~~~~~~HEigHaLGl~H~~~~~drd~~~~~~~~~~~~~~~~~~~~  130 (140)
T smart00235       65 TLSHAGRP-GGDQHFSL-GNGCI------------NTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNITRNFDLSNDD  130 (140)
T ss_pred             ceeeeecC-CCceEEEc-cCCcC------------CcccHHHHHHHHhcCCcCCCCCcccCeEEEehhhhhhcccccccc
Confidence            26888888 78888876 55542            13599999999999999998887   9999987654567888889


Q ss_pred             HHHHHHHhCC
Q 043639          215 IQGVQALYGS  224 (261)
Q Consensus       215 I~~iq~LYG~  224 (261)
                      ..+++++||+
T Consensus       131 ~~~~~~~yg~  140 (140)
T smart00235      131 SLGIPYDYGS  140 (140)
T ss_pred             CCCchhccCc
Confidence            9999999984

Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.

>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily

Probab=99.91  E-value=4.8e-24  Score=181.72  Aligned_cols=124  Identities=27%  Similarity=0.331  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCC-------ceeeeccccc
Q 043639           85 TDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES-------GKFHLDAAET  157 (261)
Q Consensus        85 ~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~-------G~vhfd~~e~  157 (261)
                      ..+++++++||+.|+++++|+|+|+.+...+||+|.+.....         +++.+.|++|..       |+|+++.+..
T Consensus        33 ~~~~~~i~~A~~~w~~~~~l~F~e~~~~~~adI~i~~~~~~~---------~~~~g~a~~p~~~~~~~~~g~i~~~~~~~  103 (186)
T cd04277          33 AAQQAAARDALEAWEDVADIDFVEVSDNSGADIRFGNSSDPD---------GNTAGYAYYPGSGSGTAYGGDIWFNSSYD  103 (186)
T ss_pred             HHHHHHHHHHHHHHHhhcCceeEECCCCCcceEEEEeccCCC---------CCccEEEECCCCCccccccceeEEecCcc
Confidence            578999999999999999999999988668999998865321         356778888853       6899998877


Q ss_pred             ccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCC----------------CCccccccCCC-------CCCCCCCHHH
Q 043639          158 WAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVK----------------EAVMYPTLKPR-------DKKVDLALDD  214 (261)
Q Consensus       158 wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~----------------~svM~p~y~~~-------~~~~~l~~dD  214 (261)
                      +...      ..+...+.|++|||||+|||.|+++.                .+||.......       .....++..|
T Consensus       104 ~~~~------~~g~~~~~t~~HEiGHaLGL~H~~~~~~~~~~~~~~~~~~~~~SVMSY~~~~~~~~~~~~~~~~~~~~~D  177 (186)
T cd04277         104 TNSD------SPGSYGYQTIIHEIGHALGLEHPGDYNGGDPVPPTYALDSREYTVMSYNSGYGNGASAGGGYPQTPMLLD  177 (186)
T ss_pred             cccC------CCChhhHHHHHHHHHHHhcCCCCCcCCCCCCCCccccccCcceEEEeecCCCCCCccccCcccCCccHHH
Confidence            6532      12556789999999999999999863                35885432221       2346799999


Q ss_pred             HHHHHHHhC
Q 043639          215 IQGVQALYG  223 (261)
Q Consensus       215 I~~iq~LYG  223 (261)
                      |++||+|||
T Consensus       178 I~AlQ~lYG  186 (186)
T cd04277         178 IAALQYLYG  186 (186)
T ss_pred             HHHHHHhhC
Confidence            999999998

Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=99.91  E-value=2.2e-24  Score=179.41  Aligned_cols=142  Identities=23%  Similarity=0.338  Sum_probs=103.5

Q ss_pred             eeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC
Q 043639           67 MTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE  146 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~  146 (261)
                      +.|+|+|... ++     ..+|+++++||+.|+++++|+|+|+.....+||+|.+.+..+..    +|..+...+...|.
T Consensus         2 ~~I~y~i~~~-~~-----~~~r~~i~~A~~~W~~~~~i~F~e~~~~~~~di~i~~~~~~~~~----~~~~~~~~~~~~~~   71 (165)
T cd04268           2 KPITYYIDDS-VP-----DKLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYN----DGTWSYGPSQVDPL   71 (165)
T ss_pred             CCEEEEEcCC-CC-----HHHHHHHHHHHHHHHHHhCcCceeccccCccCceEEEEEeecCC----CCccccCCccCCCC
Confidence            3899999742 22     57899999999999999999999998755899999998643111    11111222222466


Q ss_pred             CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCC----------------CCCccccccCCC------
Q 043639          147 SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV----------------KEAVMYPTLKPR------  204 (261)
Q Consensus       147 ~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~----------------~~svM~p~y~~~------  204 (261)
                      .|+|+++....|....    ...+..++.|++|||||+|||.|+++                ..|||.+.....      
T Consensus        72 ~g~i~~~~~~~~~~~~----~~~~~~~~~~~~HEiGHaLGL~H~~~~~~~~~~~~~~~~~~~~~SvM~y~~~~~~~~~~~  147 (165)
T cd04268          72 TGEILLARVYLYSSFV----EYSGARLRNTAEHELGHALGLRHNFAASDRDDNVDLLAEKGDTSSVMDYAPSNFSIQLGD  147 (165)
T ss_pred             CccEEeeEEEEchhHH----HHHHHHHHHHHHHHHHHHhcccccCcCCccCCcchhhccCCCCcccCCCCcccccccccc
Confidence            7899998766543110    01245678999999999999999998                899998654421      


Q ss_pred             CCCCCCCHHHHHHHHHHh
Q 043639          205 DKKVDLALDDIQGVQALY  222 (261)
Q Consensus       205 ~~~~~l~~dDI~~iq~LY  222 (261)
                      .....|+.+||++||.||
T Consensus       148 ~~~~~~~~~Di~ai~~lY  165 (165)
T cd04268         148 GQKYTIGPYDIAAIKKLY  165 (165)
T ss_pred             ccCCCCCHHHHHHHHhcC
Confidence            134689999999999999

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=99.74  E-value=1.5e-17  Score=143.36  Aligned_cols=109  Identities=28%  Similarity=0.440  Sum_probs=75.6

Q ss_pred             cccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCce
Q 043639           60 RWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVL  139 (261)
Q Consensus        60 kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~l  139 (261)
                      +|+.+.  .|+|.|... .     .+.+++.|++||+.|+++++|+|+|++. ..+||+|.|..+. | ++++.|..+..
T Consensus         2 ~W~~~~--~~~~~f~~~-~-----~~~~r~~I~~A~~~W~~~t~i~F~~~~~-~~adi~I~f~~~~-G-c~S~vG~~~~~   70 (198)
T cd04327           2 LWRNGT--VLRIAFLGG-P-----DAFLKDKVRAAAREWLPYANLKFKFVTD-ADADIRISFTPGD-G-YWSYVGTDALL   70 (198)
T ss_pred             CCCCCC--eEEEEeCCC-C-----cHHHHHHHHHHHHHHhhhcCeEEEECCC-CCCCEEEEEecCC-C-CCCCcCCcccc
Confidence            688873  688888742 1     3678999999999999999999999976 5799999998743 3 56666654321


Q ss_pred             eeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          140 AHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       140 AhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                         ..+..-.+.+.    |....     ..+.+...|++|||||||||.|++
T Consensus        71 ---~~~~~~t~~l~----~~~~~-----~~~~~~~~~i~HElgHaLG~~HEh  110 (198)
T cd04327          71 ---IGADAPTMNLG----WFTDD-----TPDPEFSRVVLHEFGHALGFIHEH  110 (198)
T ss_pred             ---cCCCCceeeee----eecCC-----CchhhHHHHHHHHHHHHhcCcccc
Confidence               11112234342    21110     113456789999999999999974

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd00203 ZnMc Zinc-dependent metalloprotease

Probab=99.73  E-value=3.1e-17  Score=136.29  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhHhcCCceEEEcCCC-CCcceEEEeeecCCCCCCCccCCCCceeeecCCCC-----ceeeeccccc
Q 043639           84 ITDIKAVFKRAFSKWASVIPVSFIETDDY-DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES-----GKFHLDAAET  157 (261)
Q Consensus        84 ~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~-~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~-----G~vhfd~~e~  157 (261)
                      ...++++++.|++.|+++++++|+++... ..+||.+.+...+.        .++.+++||.|..     |.+++.....
T Consensus        20 ~~~~~~~v~~a~~~w~~~~~i~f~~~~~~~~~~di~~~~~~~~~--------~~~~~g~a~~~~~c~~~~~~~~~~~~~~   91 (167)
T cd00203          20 SAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDF--------DGGTGGWAYLGRVCDSLRGVGVLQDNQS   91 (167)
T ss_pred             HHHHHHHHHHHHHHHHhhhCceEEEeccCCCcCcEEEEeccccC--------CCCceEEEecCCccCCCCCcEEEecCCc
Confidence            46799999999999999999999999863 38999998875432        2245567776653     4555433222


Q ss_pred             ccccCCCCCCCccccchhhhhhhhhhhcCCCCCCC--------------------CCCccccccCCC--CCCCCCCHHHH
Q 043639          158 WAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV--------------------KEAVMYPTLKPR--DKKVDLALDDI  215 (261)
Q Consensus       158 wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~--------------------~~svM~p~y~~~--~~~~~l~~dDI  215 (261)
                      +           +.....|++|||||+|||.|.++                    ..+||+|.....  .....++..||
T Consensus        92 ~-----------~~~~~~~~~HElGH~LGl~H~~~~~~~~~~~~~~~~~~~~~~~~~siM~y~~~~~~~~~~~~fS~~d~  160 (167)
T cd00203          92 G-----------TKEGAQTIAHELGHALGFYHDHDRKDRDDYPTIDDTLNAEDDDYYSVMSYTKGSFSDGQRKDFSQCDI  160 (167)
T ss_pred             c-----------cccchhhHHHHHHHHhCCCccCcCCCCCCCccccccccCCCCCCCeEeccCccccCcccCCCcCHHHH
Confidence            1           33567999999999999999876                    358998765531  24568999999


Q ss_pred             HHHHHHh
Q 043639          216 QGVQALY  222 (261)
Q Consensus       216 ~~iq~LY  222 (261)
                      +.||++|
T Consensus       161 ~~i~~~Y  167 (167)
T cd00203         161 DQINKLY  167 (167)
T ss_pred             HHHHhhC
Confidence            9999998

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.

>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2

Probab=99.61  E-value=7e-15  Score=126.76  Aligned_cols=146  Identities=18%  Similarity=0.236  Sum_probs=88.5

Q ss_pred             eEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhc------CCceEEEcCCC--CCcceEEEeeecCCCCCCCccCCCCce
Q 043639           68 TLSYAFSKENMINYLHITDIKAVFKRAFSKWASV------IPVSFIETDDY--DFADIRIGFYNGDHGDGEPFDGVLGVL  139 (261)
Q Consensus        68 ~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~v------t~l~F~ev~~~--~~aDI~I~f~~~~hgd~~~fdG~gg~l  139 (261)
                      .|||+|..  +++    .+++++|++||+.|+++      .++.+.++...  ...||++...+-.+.+    ++..+..
T Consensus         9 pItyyI~~--~~p----~~~r~aI~~A~~~Wn~~fe~~Gf~~a~~v~~~p~~~~~~Diry~~ir~~~~~----~~~~~~g   78 (197)
T cd04276           9 PIVYYLDN--TFP----EKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDIRYNVIRWIHSP----NGGWAYG   78 (197)
T ss_pred             CEEEEecC--CCc----HHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCCCCcCcccceEEEEEEEecC----CCcceec
Confidence            89999984  333    78999999999999997      46666665421  2468985444333322    1222333


Q ss_pred             eeecCCCCc-----eeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCC---------------------C
Q 043639          140 AHSFSPESG-----KFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV---------------------K  193 (261)
Q Consensus       140 AhA~~P~~G-----~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~---------------------~  193 (261)
                      .+...|..|     +|.++........... ....+..+..+++||+||+|||.|...                     .
T Consensus        79 ps~~dPrTGeIl~a~V~l~~~~~~~~~~~~-~~~~~~~~~~~~~he~gh~lGl~hn~~~s~~~~~~~l~~~~~~~~~~~~  157 (197)
T cd04276          79 PSVVDPRTGEILKADVILYSGFLRQDQLWY-EDLLAASLRYLLAHEVGHTLGLRHNFKASSDGSNEELEDPLGTKEKGAT  157 (197)
T ss_pred             ccccCCCCCCeEEEEEEeCchhhccchhHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCchhhhcchhhhhhcCCc
Confidence            444456554     5566553321110000 000123467899999999999999752                     2


Q ss_pred             CCcc-ccccCC--C------CCCCCCCHHHHHHHHHHhCC
Q 043639          194 EAVM-YPTLKP--R------DKKVDLALDDIQGVQALYGS  224 (261)
Q Consensus       194 ~svM-~p~y~~--~------~~~~~l~~dDI~~iq~LYG~  224 (261)
                      .||| |+.+..  .      .....+...||.+||.+||.
T Consensus       158 ~SVMdY~~~~~~~~~~~~~~~~~~~~g~yDi~Aiq~~Y~~  197 (197)
T cd04276         158 SSVMDYPPPNVAAQGEDQGDYYPPTIGPYDKWAIEYGYTP  197 (197)
T ss_pred             ceeecCccccccccCccccccccCCCchHHHHHHHHHcCC
Confidence            4677 322111  0      12346899999999999984

A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

Probab=99.57  E-value=2.4e-14  Score=121.87  Aligned_cols=91  Identities=21%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             eEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCC
Q 043639           68 TLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES  147 (261)
Q Consensus        68 ~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~  147 (261)
                      .|.|.|... ++     ...++.|++||+.|+++++|+|+|...   ++..|.|..+ .| ++++.|..+        +.
T Consensus         3 ~VpY~i~~~-~~-----~~~~~~I~~A~~~w~~~TcIrF~~~~~---~~~~I~f~~~-~G-c~S~vG~~~--------~~   63 (180)
T cd04280           3 TVPYVIDGS-FD-----ESDRSLILRAMREIESNTCIRFVPRTT---EKDYIRIVKG-SG-CWSYVGRVG--------GR   63 (180)
T ss_pred             EEEEEECCC-CC-----HHHHHHHHHHHHHHHhCCcceEEECCC---CCcEEEEEcC-CC-cceecCccC--------Cc
Confidence            799999842 32     578999999999999999999999875   4455666554 23 444444311        11


Q ss_pred             ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCC
Q 043639          148 GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV  192 (261)
Q Consensus       148 G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~  192 (261)
                      -.+.+..               ++....+++|||||||||.|++.
T Consensus        64 q~i~l~~---------------~c~~~g~v~HE~~HalG~~HEh~   93 (180)
T cd04280          64 QVVSLGS---------------GCFSLGTIVHELMHALGFYHEQS   93 (180)
T ss_pred             eeEEeCC---------------CcCcCchhHHHHHHHhcCcchhc
Confidence            2232221               23336899999999999999874

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.

>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site

Probab=99.54  E-value=2.8e-14  Score=122.49  Aligned_cols=96  Identities=24%  Similarity=0.436  Sum_probs=60.5

Q ss_pred             cccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCce
Q 043639           60 RWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVL  139 (261)
Q Consensus        60 kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~l  139 (261)
                      ||+..   +|.|.|.. +++     +..++.|++||+.|++.++|+|+++. . .....|.|..+ .| ++++.|..+  
T Consensus         2 ~Wp~~---~IpY~~~~-~~~-----~~~~~~I~~Am~~~e~~TcI~F~~~~-~-~~~~~i~~~~~-~g-C~S~vG~~~--   66 (191)
T PF01400_consen    2 KWPNG---TIPYYIDP-SFS-----SSQRQRIRKAMDEWEKNTCIRFVERT-E-NEDDYISFSNG-SG-CWSYVGRQG--   66 (191)
T ss_dssp             S-GGG---EEEEEEET-TS------HHHHHHHHHHHHHHHHHSSEEEEE-S-S-SSSSEEEEESS-SS-EEEESS--S--
T ss_pred             cCCCC---EEEEEECC-CCC-----HHHHHHHHHHHHHHHhCCCEEEEECC-C-CCceEEEeecC-cc-ccchhhhcC--
Confidence            89999   99999985 332     57889999999999999999999998 2 33344555442 22 344444311  


Q ss_pred             eeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          140 AHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       140 AhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                            +.=.+.+.               .+.....+++|||||||||.|.+
T Consensus        67 ------g~q~i~l~---------------~~c~~~~~i~HEl~HaLG~~HEh   97 (191)
T PF01400_consen   67 ------GEQTINLG---------------DGCFSVGTILHELGHALGFWHEH   97 (191)
T ss_dssp             ------SEEEEEE----------------TTC-SHHHHHHHHHHHHTB--GG
T ss_pred             ------cceeEEec---------------ceeCCccchHHHHHHHHhhhhhh
Confidence                  00012221               02234679999999999999986

; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....

>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

Probab=99.54  E-value=1.1e-13  Score=119.70  Aligned_cols=99  Identities=24%  Similarity=0.434  Sum_probs=66.7

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      ..+|++.   .|.|.|.. +++     ...++.|++||+.|++.|+|+|++-.. ...  .|.|..+..| ++++.|.-+
T Consensus         7 ~~~Wp~~---~VpY~i~~-~~~-----~~~~~~I~~Am~~~~~~TCirF~~r~~-~~~--yi~f~~~~~G-C~S~vG~~~   73 (200)
T cd04281           7 ERIWPGG---VIPYVIDG-NFT-----GSQRAMFKQAMRHWENFTCVTFVERTP-EEN--YIVFTYRPCG-CCSYVGRRG   73 (200)
T ss_pred             cCcCCCC---EEEEEECC-CCC-----HHHHHHHHHHHHHHHhCCceEEEECCC-CCC--EEEEEECCCC-eeEcCCCcC
Confidence            5699999   99999964 332     467889999999999999999998764 333  3444443333 556655422


Q ss_pred             ceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          138 VLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       138 ~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      .-.+       .+.+        +       .+.....+++|||||||||-|++
T Consensus        74 ~g~q-------~isl--------~-------~~C~~~Gti~HEl~HaLGf~HEh  105 (200)
T cd04281          74 NGPQ-------AISI--------G-------KNCDKFGIVVHELGHVIGFWHEH  105 (200)
T ss_pred             CCce-------eeec--------C-------CCcCcCchHHHHHHHHhcCcchh
Confidence            0011       1111        1       12334689999999999999986

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=99.52  E-value=1.3e-13  Score=119.15  Aligned_cols=136  Identities=20%  Similarity=0.352  Sum_probs=89.0

Q ss_pred             CeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhc-CCceEEEc--CCCCCcceEEEeeecCCCCCCCccCCCCceeee
Q 043639           66 PMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASV-IPVSFIET--DDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHS  142 (261)
Q Consensus        66 ~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~v-t~l~F~ev--~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA  142 (261)
                      +++|+..+.+.+. ..++ +.++.++++|++.|+++ ..|+|+-+  .....+||.|.-...        +.+.|+.+-|
T Consensus        38 ~~~I~i~~~~~~~-~~l~-s~~~~al~~AI~~yNalgl~i~F~~t~g~~~~~~di~v~~~~~--------~~~~G~ggsA  107 (211)
T PF12388_consen   38 PRTITIIGYTGGS-QSLN-SAWRTALDEAINNYNALGLSITFTLTFGTNYQNADIIVYSNSS--------NNPSGAGGSA  107 (211)
T ss_pred             CCEEEEEeCCCcc-cccc-HHHHHHHHHHHHHHHhhCCceEEEEecCCCcCCCceEEEeccC--------CCCCCcceec
Confidence            3488888875321 1233 67999999999999997 35677422  233466776632211        1223456678


Q ss_pred             cCC-CCc----eeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC--------------------------
Q 043639          143 FSP-ESG----KFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP--------------------------  191 (261)
Q Consensus       143 ~~P-~~G----~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~--------------------------  191 (261)
                      .|| ..|    .|.+     +.+.     .........|++|||||+|||.|++                          
T Consensus       108 GFP~s~G~P~~~I~I-----~~~~-----~~~~~~~~hvi~HEiGH~IGfRHTD~~~R~SCG~~~nEg~~~vGAi~IpGT  177 (211)
T PF12388_consen  108 GFPTSNGNPYKFIQI-----YGLS-----NYSVNVIEHVITHEIGHCIGFRHTDYFNRSSCGSGGNEGSAGVGAIHIPGT  177 (211)
T ss_pred             cCCCCCCCCCceEEE-----EecC-----CCchhHHHHHHHHHhhhhccccccCcCCcccccccCCcCccccceEECCCC
Confidence            889 444    3555     1111     1112335789999999999999986                          


Q ss_pred             ----CCCCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          192 ----VKEAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       192 ----~~~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                          |++|||...+... ....++..||.+|++||
T Consensus       178 Pt~~d~~SiM~ac~~~~-~~~~f~~~Di~Al~~lY  211 (211)
T PF12388_consen  178 PTGADPNSIMNACFSSG-EDGEFTSNDITALNYLY  211 (211)
T ss_pred             CCCCCCchhhhccccCC-CCCCcChhhHHHHHhhC
Confidence                3457887766543 35579999999999999

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily

Probab=99.44  E-value=1.4e-12  Score=114.88  Aligned_cols=103  Identities=21%  Similarity=0.332  Sum_probs=67.9

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      -++.....+|++    .|-|.|.. +++     ...+..|++||+.|++.|+|+|++... .. | .|.|..+. | +++
T Consensus        37 ~a~~~~~~~Wp~----~VPY~i~~-~~~-----~~~~~~I~~Am~~~~~~TCirF~~rt~-e~-~-yi~i~~~~-G-C~S  101 (230)
T cd04282          37 NGLIGDTYRWPF----PIPYILDD-SLD-----LNAKGVILKAFEMYRLKSCVDFKPYEG-ES-N-YIFFFKGS-G-CWS  101 (230)
T ss_pred             ccccCcccCCCc----ceeEEECC-CCC-----HHHHHHHHHHHHHHHhCCCeeEEECCC-CC-c-EEEEEcCC-C-eee
Confidence            344445679987    49999964 343     467899999999999999999998764 33 3 24444432 3 555


Q ss_pred             ccCCCCceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCC
Q 043639          132 FDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV  192 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~  192 (261)
                      +.|..|        +.-.+.+.               .++....+++|||||||||-|++.
T Consensus       102 ~vG~~g--------g~q~isl~---------------~~C~~~Gti~HEl~HalGf~HEqs  139 (230)
T cd04282         102 MVGDQQ--------GGQNLSIG---------------AGCDYKATVEHEFLHALGFYHEQS  139 (230)
T ss_pred             ccCccC--------CeEEEEEC---------------CCcCCCchHHHHHHHHhCCccccc
Confidence            555421        01112221               133446899999999999999863

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.

>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily

Probab=99.40  E-value=3.3e-12  Score=108.89  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=59.6

Q ss_pred             eeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC
Q 043639           67 MTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE  146 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~  146 (261)
                      ..|-|.|.. +++     ...++.|++|++.|++.|+|+|++... ....|+|  ..+ .| ++++.|..|-        
T Consensus         4 ~~IpY~i~~-~~~-----~~~~~~I~~A~~~~~~~TCirF~~~~~-~~~yi~~--~~~-~g-C~S~vG~~gg--------   64 (182)
T cd04283           4 VYVPYVISP-QYS-----ENERAVIEKAMQEFETLTCVRFVPRTT-ERDYLNI--ESR-SG-CWSYIGRQGG--------   64 (182)
T ss_pred             EEEEEEECC-CCC-----HHHHHHHHHHHHHHHhCCceeeEECCC-CCcEEEE--EcC-CC-ceEecCccCC--------
Confidence            378899964 332     467899999999999999999998753 3334444  332 22 4555443210        


Q ss_pred             CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          147 SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       147 ~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      .-.+.+.              ..+.....+++|||||||||.|++
T Consensus        65 ~q~i~l~--------------~~~C~~~G~i~HEl~HaLG~~HEh   95 (182)
T cd04283          65 RQTVSLQ--------------KQGCMYKGIIQHELLHALGFYHEQ   95 (182)
T ss_pred             ceeEecC--------------CCCcCccchHHHHHHHHhCCcccc
Confidence            0011111              013334689999999999999986

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.

>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=5.8e-12  Score=119.92  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=75.4

Q ss_pred             cceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCC
Q 043639           50 KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDG  129 (261)
Q Consensus        50 kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~  129 (261)
                      +|........+|+..   .|.|.|... +.     ...+.+|++||+.|++.|+|+|.|..+ .+.+..+.+...  | +
T Consensus        71 ~r~~~~~~~~~Wp~~---~ipY~i~~~-~~-----~~~r~~i~~A~~~~~~~TCi~F~~~~~-~~~~~~~~~~~~--g-C  137 (411)
T KOG3714|consen   71 RRNGTSNPERRWPNG---VIPYYIDGS-FT-----SSQRALIRQAMREIENHTCIRFVERTT-PDKDYLIVFTGG--G-C  137 (411)
T ss_pred             hhhcccChhhcCCCC---eeeeEECCC-CC-----HHHHHHHHHHHHHHhhCcceEEEeCCC-CCcceEEEeCCC--c-c
Confidence            345555667899998   999999853 43     589999999999999999999999874 445555554432  3 5


Q ss_pred             CCccCCCCceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          130 EPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       130 ~~fdG~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      +++.|..|.-         .      ..-+++       .+...+.|++|||+||||+-|.+
T Consensus       138 ~S~VGr~gg~---------~------q~~sl~-------~~C~~~G~i~HEl~HaLGf~Heh  177 (411)
T KOG3714|consen  138 YSYVGRRGGG---------Q------QLLSLG-------DGCDRFGTIVHELMHALGFWHEH  177 (411)
T ss_pred             eeeeCccCCC---------c------cceecC-------CCcCcCchhHHHHHHHhhhhhcc
Confidence            5665643311         0      011111       24455899999999999999986

>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.19  E-value=1.1e-10  Score=92.72  Aligned_cols=125  Identities=26%  Similarity=0.313  Sum_probs=75.9

Q ss_pred             eeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHh-cCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCC
Q 043639           67 MTLSYAFSKENMINYLHITDIKAVFKRAFSKWAS-VIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP  145 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~-vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P  145 (261)
                      ++|+|.-+.        ..+.+..|.+|.+.|+. |.+++|++...   ++|++.... +         +++..+..--.
T Consensus         2 vtv~Ydas~--------A~~f~~~i~~aa~iWN~sV~NV~L~~~s~---a~~~~~~~~-~---------~~~sya~~~g~   60 (132)
T PF02031_consen    2 VTVYYDASR--------APEFRSAIAQAAQIWNSSVSNVRLVEGSS---ADIRYYEGN-D---------PRGSYASTDGL   60 (132)
T ss_dssp             EEEEEEEEE---------GGGHHHHHHHHHHHHHH-SSEEEEE-SS----SEEEEEE------------TT--EEEE-SS
T ss_pred             EEEEEeCCC--------CchhHHHHHHHHHHHhcccCceEEeecCC---CcEEEEEec-C---------CCCcccccCCC
Confidence            378888763        24688999999999987 78999999863   888876432 1         12333333334


Q ss_pred             CCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCC--CCCCCCccccccCCCC-CCCCCCHHHHHHHHHHh
Q 043639          146 ESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH--SPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALY  222 (261)
Q Consensus       146 ~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~H--s~~~~svM~p~y~~~~-~~~~l~~dDI~~iq~LY  222 (261)
                      +.|.|.+|..  +.         .+++-..|++|||||.|||..  +...+.+|...-.+.. .+..+...++..+++||
T Consensus        61 G~G~I~l~~~--~~---------qgy~~~RIaaHE~GHiLGLPD~y~GpCS~LMSG~~aG~sCtN~~Pna~E~a~V~~~~  129 (132)
T PF02031_consen   61 GSGYIFLDYQ--QN---------QGYNSTRIAAHELGHILGLPDHYPGPCSELMSGGSAGTSCTNAYPNAAERARVNSLF  129 (132)
T ss_dssp             S-EEEEEEHH--HH---------HHS-HHHHHHHHHHHHHT----TTS-TT-GGGTTTT-TT----S--HHHHHHHHHHC
T ss_pred             CcEEEEechH--Hh---------hCCccceeeeehhccccCCCCCCCCccHHhhcCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence            5688888752  21         156667899999999999953  3445789975544322 34467889999999998


Q ss_pred             C
Q 043639          223 G  223 (261)
Q Consensus       223 G  223 (261)
                      .
T Consensus       130 a  130 (132)
T PF02031_consen  130 A  130 (132)
T ss_dssp             T
T ss_pred             c
Confidence            5

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.

>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.8e-09  Score=90.53  Aligned_cols=148  Identities=22%  Similarity=0.320  Sum_probs=86.3

Q ss_pred             CCCcccCCCCeeEEEEEecC-CcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCC
Q 043639           57 GKPRWTRHVPMTLSYAFSKE-NMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGV  135 (261)
Q Consensus        57 ~~~kW~~~~~~~LTY~~~~~-~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~  135 (261)
                      +..-|.+.   .++.++.-. +...--....+++++..|++-|++.-|+..+|-.  ..|||+|...+.. |  .+.++.
T Consensus        77 ~~L~~S~f---~v~v~irwpq~l~n~~~ap~wq~a~~tava~wa~~fpl~ive~~--eeaDItie~~n~p-g--tg~~~~  148 (236)
T COG5549          77 GYLIWSEF---PVDVRIRWPQNLENVEGAPRWQGAYLTAVAGWAKTFPLIIVERF--EEADITIEVGNPP-G--TGWRQY  148 (236)
T ss_pred             ceeecccC---cceeeecccccccccccchhHHHHHHHHHHHHHHhCCceeeecc--eeeeEEEEecCCC-C--Cccccc
Confidence            34568776   555555411 1111111235789999999999999777666654  6899999875432 2  112222


Q ss_pred             CC---------ceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCC-CCCCCCCccccccCCCC
Q 043639          136 LG---------VLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLT-HSPVKEAVMYPTLKPRD  205 (261)
Q Consensus       136 gg---------~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~-Hs~~~~svM~p~y~~~~  205 (261)
                      |.         .+.|+..|+    |++..  ..+...  .+....++..+|.||+|||||+. |+..+ ++|.+..+   
T Consensus       149 grArtal~~~efl~~~~~~~----~lnhr--~~i~~~--pg~~~e~L~~tarhElGhaLgi~ghsd~k-s~aly~~s---  216 (236)
T COG5549         149 GRARTALIAYEFLGHALGLG----HLNHR--GDIMYP--PGELRENLNPTARHELGHALGIWGHSDLK-SDALYGIS---  216 (236)
T ss_pred             chHHHHHHHHHHhhhccCcc----ccccc--ccccCC--cccchhhhhHHHHHhhcchheecccccch-hhhhcchh---
Confidence            11         112222221    12110  011111  12335678899999999999997 98765 45543333   


Q ss_pred             CCCCCCHHHHHHHHHHhCCC
Q 043639          206 KKVDLALDDIQGVQALYGSN  225 (261)
Q Consensus       206 ~~~~l~~dDI~~iq~LYG~~  225 (261)
                       ...++..|+..+.++|-.+
T Consensus       217 -~~~is~rdv~tL~r~Yeqp  235 (236)
T COG5549         217 -WQGISRRDVKTLERKYEQP  235 (236)
T ss_pred             -hcccCHHHHHHHHHHhcCC
Confidence             2238999999999999754

>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function

Probab=98.33  E-value=4.4e-06  Score=71.79  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=89.9

Q ss_pred             eeEEEEEecCCcCCcC---CHHHHHHHHHHHH---HHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCC--CccCCCCc
Q 043639           67 MTLSYAFSKENMINYL---HITDIKAVFKRAF---SKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE--PFDGVLGV  138 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l---~~~~~~~~i~~Af---~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~--~fdG~gg~  138 (261)
                      +.++|++.-++-....   ..+++.++|.+.+   +-|.....+.|++|.. +.+|++|...+...-+..  +++-.+. 
T Consensus        29 ~~~rY~VeVE~Gi~~~~~gg~~~fA~~V~~tL~DpRgW~~~g~~~F~rV~~-~~~Df~I~Lasp~T~~~lC~g~~~~~e-  106 (203)
T PF11350_consen   29 RLYRYRVEVEDGIDVDAYGGDDAFAAMVDATLADPRGWTADGRVRFQRVDS-GAPDFRISLASPGTTDRLCAGLDTSGE-  106 (203)
T ss_pred             ceEEEEEEEccCcCCcccccHHHHHHHHHHHhcCCCCCCcCCCEEEEECCC-CCCCEEEEECCcchhhhhccCcCcCce-
Confidence            5899999866422211   1356667777766   4799888999999987 559999999876543321  2222211 


Q ss_pred             eeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCC-----CCccccccCCCCCCCCCCHH
Q 043639          139 LAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVK-----EAVMYPTLKPRDKKVDLALD  213 (261)
Q Consensus       139 lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~-----~svM~p~y~~~~~~~~l~~d  213 (261)
                      . .-+.|..++|.+|. ..|..+.......-+.+...|+=||+||+||-.|..=+     --||-      +..+.|.-+
T Consensus       107 ~-SC~~~~g~~VvIN~-~RWv~Ga~~f~gdl~~YRqYvINHEVGH~LGh~H~~Cpg~G~~APVMm------QQT~gL~g~  178 (203)
T PF11350_consen  107 T-SCRNPAGGRVVINL-ARWVRGAPAFGGDLASYRQYVINHEVGHALGHGHEPCPGPGRPAPVMM------QQTLGLDGC  178 (203)
T ss_pred             e-EeecCCCCeEEEeh-HHhhccCcccCCcHHHHHHHhhhhhhhhhcccCCCcCCCCCCcCCcch------hhhcccCCc
Confidence            1 12334456777765 46877655433333455678999999999999887643     33553      223455556


Q ss_pred             HHHHH
Q 043639          214 DIQGV  218 (261)
Q Consensus       214 DI~~i  218 (261)
                      +|..|
T Consensus       179 ~~~~~  183 (203)
T PF11350_consen  179 ELAKL  183 (203)
T ss_pred             ccccc
Confidence            66655

Some are annotated as membrane proteins, however this cannot be confirmed.

>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup

Probab=97.98  E-value=5.5e-05  Score=64.40  Aligned_cols=106  Identities=16%  Similarity=0.083  Sum_probs=59.7

Q ss_pred             HHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCCceeeecccccccccCCCCCCCcc
Q 043639           91 FKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVA  170 (261)
Q Consensus        91 i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~  170 (261)
                      ..++|..|....         ....|+.+.+...+-       +.+++++.||.++.-...+...  .....     ...
T Consensus        74 ~l~~f~~~~~~~---------~~~~d~~~l~t~~~~-------~~~~~~G~a~~~~~C~~~~~~~--v~~~~-----~~~  130 (192)
T cd04267          74 TLNSFSFWRAEG---------PIRHDNAVLLTAQDF-------IEGDILGLAYVGSMCNPYSSVG--VVEDT-----GFT  130 (192)
T ss_pred             HHHHHHHHHhcC---------CCCCceEEEEeeecc-------CCCCeeeeecccCCCCCCCCeE--EEecC-----Ccc
Confidence            356788997644         145666666553321       2345667777665211000000  00000     001


Q ss_pred             ccchhhhhhhhhhhcCCCCCCCC----------CCccccccCCCCCCCCCCHHHHHHHHH
Q 043639          171 VDLESVAVHEIGHLLGLTHSPVK----------EAVMYPTLKPRDKKVDLALDDIQGVQA  220 (261)
Q Consensus       171 ~~l~~Va~HEiGHaLGL~Hs~~~----------~svM~p~y~~~~~~~~l~~dDI~~iq~  220 (261)
                      .....+++||+||.|||.|....          .-||.|.... .....++...+..|+.
T Consensus       131 ~~~~~~~aHElGH~lG~~HD~~~~~~~~c~~~~~~IM~~~~~~-~~~~~FS~CS~~~i~~  189 (192)
T cd04267         131 LLTALTMAHELGHNLGAEHDGGDELAFECDGGGNYIMAPVDSG-LNSYRFSQCSIGSIRE  189 (192)
T ss_pred             eeehhhhhhhHHhhcCCcCCCCCCccccCCCCCCeEEcccccC-CCCCccChhhHHHHHH
Confidence            23457999999999999998753          2389876543 2345678877777764

The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.

>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup

Probab=97.96  E-value=4.2e-05  Score=66.26  Aligned_cols=120  Identities=16%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             HHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCCceeeecccccccccCCCCCCCcc
Q 043639           91 FKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVA  170 (261)
Q Consensus        91 i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~  170 (261)
                      .-+.|..|.......-.  .+....|+.+.+...+....   ++++++++.||..+-=.    ......+..     ..+
T Consensus        72 ~L~~F~~w~~~~~~~~~--~~~~~~D~a~llt~~d~~~~---~~~~~~~G~A~~ggiC~----~~~s~~i~~-----~~~  137 (207)
T cd04273          72 SLKSFCRWQKKLNPPND--SDPEHHDHAILLTRQDICRS---NGNCDTLGLAPVGGMCS----PSRSCSINE-----DTG  137 (207)
T ss_pred             HHHHHHHHHHHcCCccc--ccccccceEEEEeeeccccc---CCCCCceEEeccccCCC----CCcceEEEc-----CCC
Confidence            35789999764332211  11246777777765443221   46677777777532100    000001110     113


Q ss_pred             ccchhhhhhhhhhhcCCCCCCC---------CCCccccccCCCCCCCCCCHHHHHHHHHHhCC
Q 043639          171 VDLESVAVHEIGHLLGLTHSPV---------KEAVMYPTLKPRDKKVDLALDDIQGVQALYGS  224 (261)
Q Consensus       171 ~~l~~Va~HEiGHaLGL~Hs~~---------~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~  224 (261)
                      .....|++|||||.||+.|-.+         .+-||+|..........++.--+..++.+...
T Consensus       138 ~~~a~~~aHElGH~LG~~HD~~~~~C~~~~~~~~IM~~~~~~~~~~~~fS~CS~~~~~~~l~~  200 (207)
T cd04273         138 LSSAFTIAHELGHVLGMPHDGDGNSCGPEGKDGHIMSPTLGANTGPFTWSKCSRRYLTSFLDT  200 (207)
T ss_pred             ceeEEeeeeechhhcCCCCCCCCCCCCCCCCCceeecccccCCCCCCCcCHHHHHHHHHHHcc
Confidence            3445799999999999999875         26799987765334667888888888776653

ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.

>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like

Probab=97.91  E-value=1.1e-05  Score=70.13  Aligned_cols=48  Identities=25%  Similarity=0.306  Sum_probs=32.2

Q ss_pred             chhhhhhhhhhhcCCCCCCCC--------------CCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          173 LESVAVHEIGHLLGLTHSPVK--------------EAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~--------------~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ...+++|||||+|||.|..+.              .+||.  |........++.-+|..|+...
T Consensus       137 ~~~~~aHEiGH~lGl~H~~~~~~~~~~~~~~~~~~~tIMs--Y~~~~~~~~FS~~~i~~i~~~~  198 (206)
T PF13583_consen  137 GYQTFAHEIGHNLGLRHDFDYSGDPYSYAYECDSGQTIMS--YASRPSRPYFSPPSIEYIREVV  198 (206)
T ss_pred             cchHHHHHHHHHhcCCCCcccCCCcccccccCCCCCEEeC--CCCCCCCCCCCchhHHHHhCCC
Confidence            357899999999999998752              25785  2211112237788888776543

>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.68  E-value=2.6e-05  Score=64.86  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=15.9

Q ss_pred             cccchhhhhhhhhhhcCCCCCCCCC
Q 043639          170 AVDLESVAVHEIGHLLGLTHSPVKE  194 (261)
Q Consensus       170 ~~~l~~Va~HEiGHaLGL~Hs~~~~  194 (261)
                      ..+...|++||+||-|||.|.....
T Consensus        66 ~~~~g~TltHEvGH~LGL~HtF~~~   90 (154)
T PF05572_consen   66 QYNFGKTLTHEVGHWLGLYHTFGGG   90 (154)
T ss_dssp             TS-SSHHHHHHHHHHTT---TT---
T ss_pred             ccccccchhhhhhhhhcccccccCC
Confidence            4456789999999999999998654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.

>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A

Probab=97.54  E-value=2.6e-05  Score=65.94  Aligned_cols=48  Identities=21%  Similarity=0.197  Sum_probs=19.3

Q ss_pred             chhhhhhhhhhhcCCCCCCCCC-------------CccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          173 LESVAVHEIGHLLGLTHSPVKE-------------AVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~~-------------svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ...|++|||||.||+.|..+..             .||++.  +......++..-|..|+.+-
T Consensus       111 ~~~~~aHElGH~lGa~Hd~~~~~~~~~~~~~~sg~~IMsy~--~~~~~~~fS~cS~~~i~~~l  171 (173)
T PF13574_consen  111 GIDTFAHELGHQLGAPHDFDNGCNPGSPTCPGSGGYIMSYA--GICNNDKFSPCSIRQIRAVL  171 (173)
T ss_dssp             HHHHHHHHHHHHHT---SSSS----SS--T-STTT-TT-SS---GGGG---------------
T ss_pred             eeeeehhhhHhhcCCCCCCCCCCCCCCCcCCCCCCEEEeeC--CCCCCccccccccccccccc
Confidence            3578999999999999987642             588743  32344567777777776543

...

>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily

Probab=97.44  E-value=5.4e-05  Score=66.77  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=22.4

Q ss_pred             cccchhhhhhhhhhhcCCCCCCCCCC
Q 043639          170 AVDLESVAVHEIGHLLGLTHSPVKEA  195 (261)
Q Consensus       170 ~~~l~~Va~HEiGHaLGL~Hs~~~~s  195 (261)
                      ..++-.|++|||||.|||.|++...+
T Consensus       134 ~~n~g~t~~HEvGH~lGL~HtF~~~~  159 (225)
T cd04275         134 PYNLGDTATHEVGHWLGLYHTFQGGS  159 (225)
T ss_pred             cccccceeEEeccceeeeeeeecCCC
Confidence            45677899999999999999998764

The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.

>COG1913 Predicted Zn-dependent proteases [General function prediction only]

Probab=97.38  E-value=7.2e-05  Score=62.91  Aligned_cols=27  Identities=44%  Similarity=0.730  Sum_probs=24.2

Q ss_pred             hhhhhhhhhhhcCCCCCCCCCCccccc
Q 043639          174 ESVAVHEIGHLLGLTHSPVKEAVMYPT  200 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~~svM~p~  200 (261)
                      ..=++||+||+|||.|=.++.=||++.
T Consensus       125 ~KEv~HElGH~~GL~HC~N~~CVM~FS  151 (181)
T COG1913         125 VKEVLHELGHLLGLSHCPNPRCVMNFS  151 (181)
T ss_pred             HHHHHHHhhhhcCcccCCCCCcEEeCC
Confidence            456899999999999999999999854

>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B

Probab=97.32  E-value=7e-05  Score=63.84  Aligned_cols=22  Identities=36%  Similarity=0.401  Sum_probs=14.5

Q ss_pred             cchhhhhhhhhhhcCCCCCCCC
Q 043639          172 DLESVAVHEIGHLLGLTHSPVK  193 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~~  193 (261)
                      ....|++|||||.||+.|..+.
T Consensus       141 ~~~~~~AHEiGH~lGa~HD~~~  162 (196)
T PF13688_consen  141 NGAITFAHEIGHNLGAPHDGDY  162 (196)
T ss_dssp             HHHHHHHHHHHHHTT-----SS
T ss_pred             ceehhhHHhHHHhcCCCCCCCC
Confidence            3468999999999999998775

...

>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C

Probab=97.23  E-value=9.8e-05  Score=58.23  Aligned_cols=17  Identities=53%  Similarity=0.808  Sum_probs=12.3

Q ss_pred             hhhhhhhhhhhcCCCCC
Q 043639          174 ESVAVHEIGHLLGLTHS  190 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs  190 (261)
                      ..+++|||||.|||.|+
T Consensus       108 ~~~~~HEiGH~lGl~Hd  124 (124)
T PF13582_consen  108 VDTFAHEIGHNLGLNHD  124 (124)
T ss_dssp             TTHHHHHHHHHTT----
T ss_pred             ceEeeehhhHhcCCCCC
Confidence            48999999999999995

>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup

Probab=97.18  E-value=0.0004  Score=61.34  Aligned_cols=49  Identities=29%  Similarity=0.455  Sum_probs=38.5

Q ss_pred             hhhhhhhhhhcCCCCCCCC-------------------------CCccccccCCCCCCCCCCHHHHHHHHHHhCCC
Q 043639          175 SVAVHEIGHLLGLTHSPVK-------------------------EAVMYPTLKPRDKKVDLALDDIQGVQALYGSN  225 (261)
Q Consensus       175 ~Va~HEiGHaLGL~Hs~~~-------------------------~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~~  225 (261)
                      .|++|||||.||+.|-.+.                         .=||+|....  ....++.--+..|+.+...+
T Consensus       147 ~t~AHElGHnLGm~HD~~~~~C~~~~~~~~~~Cp~~~~~C~~~~~~IM~~~~~~--~~~~FS~CS~~~~~~~l~~~  220 (228)
T cd04271         147 QVFAHEIGHTFGAVHDCTSGTCSDGSVGSQQCCPLSTSTCDANGQYIMNPSSSS--GITEFSPCTIGNICSLLGRN  220 (228)
T ss_pred             eehhhhhhhhcCCCCCCCCCccccccccccccCCCcccccCCCCCEEeecCcCC--CCCccChhhHHHHHHHHhcC
Confidence            6999999999999996431                         1189987543  45789999999999888754

The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.

>PRK13267 archaemetzincin-like protein; Reviewed

Probab=97.14  E-value=0.00021  Score=60.90  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=23.5

Q ss_pred             hhhhhhhhhhhcCCCCCCCCCCcccc
Q 043639          174 ESVAVHEIGHLLGLTHSPVKEAVMYP  199 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~~svM~p  199 (261)
                      ..+++||+||.|||.|-.++.-+|+.
T Consensus       126 ~k~~~HElGH~lGL~HC~~~~CvM~~  151 (179)
T PRK13267        126 RKEVTHELGHTLGLEHCDNPRCVMNF  151 (179)
T ss_pred             HHHHHHHHHHHcCCccCCCCCccCCC
Confidence            45699999999999999999999984

>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily

Probab=97.07  E-value=0.00063  Score=58.04  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=36.5

Q ss_pred             chhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHHhCC
Q 043639          173 LESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQALYGS  224 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~  224 (261)
                      .-.+++|||||.||+.|-.+      ..-||+|....  ....++.--..-++++...
T Consensus       131 ~a~~~AHElGH~lG~~HD~~~c~C~~~~cIM~~~~~~--~~~~fS~CS~~~~~~~l~~  186 (194)
T cd04269         131 FAVTMAHELGHNLGMEHDDGGCTCGRSTCIMAPSPSS--LTDAFSNCSYEDYQKFLSR  186 (194)
T ss_pred             HHHHHHHHHHhhcCCCcCCCCCCCCCCCeEecCCCCC--CCCCCChhhHHHHHHHHhc
Confidence            35799999999999999653      35689886543  3456777777777766654

Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.

>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.91  E-value=0.00039  Score=59.91  Aligned_cols=27  Identities=44%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             chhhhhhhhhhhcCCCCCCCCCCccccc
Q 043639          173 LESVAVHEIGHLLGLTHSPVKEAVMYPT  200 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~~svM~p~  200 (261)
                      +..+++||+||++||.|=.+ .-+|++.
T Consensus       145 ~~Kea~HElGH~~GL~HC~~-~CvM~~s  171 (194)
T PF07998_consen  145 VCKEAVHELGHLFGLDHCEN-RCVMNFS  171 (194)
T ss_dssp             HHHHHHHHHHHHTT----SS-TSTTS--
T ss_pred             HHHHHHHHHHHHcCCcCCCC-CCccCCC
Confidence            45799999999999999999 9999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.

>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site

Probab=96.46  E-value=0.0039  Score=53.42  Aligned_cols=52  Identities=19%  Similarity=0.415  Sum_probs=33.4

Q ss_pred             ccchhhhhhhhhhhcCCCCCCC--------CCCccccccCCCCCCCCCCHHHHHHHHHHhC
Q 043639          171 VDLESVAVHEIGHLLGLTHSPV--------KEAVMYPTLKPRDKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       171 ~~l~~Va~HEiGHaLGL~Hs~~--------~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG  223 (261)
                      ..+-.+++|||||.||+.|-..        ..-||.|...+. ....++.--+..++++..
T Consensus       129 ~~~a~~~AHelGH~lGm~HD~~~~C~C~~~~~cIM~~~~~~~-~~~~fS~CS~~~~~~~l~  188 (199)
T PF01421_consen  129 LSFAVIIAHELGHNLGMPHDGDNGCKCPRRDGCIMSPSIGPS-SSDKFSNCSRRQFEEFLS  188 (199)
T ss_dssp             HHHHHHHHHHHHHHTT---TTTCTHCSSSSSSSTTSSSSSSS-STSSS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcCCcCCCCCccccccccCC-CCCCcCHHHHHHHHHHHc
Confidence            3445789999999999999776        256899855432 233788877777776643

; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....

>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily

Probab=96.33  E-value=0.0045  Score=55.12  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=36.1

Q ss_pred             hhhhhhhhhhhcCCCCCCC-----C------CCccccccCCC--CCCCCCCHHHHHHHHHHhC
Q 043639          174 ESVAVHEIGHLLGLTHSPV-----K------EAVMYPTLKPR--DKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~-----~------~svM~p~y~~~--~~~~~l~~dDI~~iq~LYG  223 (261)
                      ..|++|||||.||..|-..     +      .=||+|.-...  .....++.--++.++...-
T Consensus       168 a~t~AHElGHnlGm~HD~~~~~C~~~~~~~~~cIM~~~~~~~~~~~~~~FS~CS~~~~~~~L~  230 (244)
T cd04270         168 DLVTAHELGHNFGSPHDPDIAECAPGESQGGNYIMYARATSGDKENNKKFSPCSKKSISKVLE  230 (244)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEecCccccCCCCCCCCCCHhHHHHHHHHHc
Confidence            4799999999999999665     1      24899864321  2356788888888876654

TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.

>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs

Probab=95.98  E-value=0.007  Score=52.83  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             chhhhhhhhhhhcCCCCCCCC------------------CCccccccCCCCCCCCCCHHHHHHHHHHhC
Q 043639          173 LESVAVHEIGHLLGLTHSPVK------------------EAVMYPTLKPRDKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~------------------~svM~p~y~~~~~~~~l~~dDI~~iq~LYG  223 (261)
                      ...+++|||||.||+.|-.+.                  .-||.+... ....+.++.--+.-++++..
T Consensus       145 ~~~~~AHElGH~lG~~HD~~~~~~~~~~~~~~~~C~~~~~~IM~~~~~-~~~~~~fS~CS~~~~~~~l~  212 (220)
T cd04272         145 GVYTMTHELAHLLGAPHDGSPPPSWVKGHPGSLDCPWDDGYIMSYVVN-GERQYRFSQCSQRQIRNVFR  212 (220)
T ss_pred             cHHHHHHHHHHHhCCCCCCCCCCccCCCCCccCcCCCCCCeEEeeccC-CCCCCccCcchHHHHHHHHc
Confidence            368999999999999995332                  357886432 23455788877777777654

Metalloproteases secreted by the salivary glands of arthropods.

>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only]

Probab=95.48  E-value=0.013  Score=55.88  Aligned_cols=58  Identities=24%  Similarity=0.336  Sum_probs=40.6

Q ss_pred             hhhhhhhhhhhcCCCCCCCCCCcc---ccccCC----CC------------C---CCCCCHHHHHHHHHHhCCCCCCCCC
Q 043639          174 ESVAVHEIGHLLGLTHSPVKEAVM---YPTLKP----RD------------K---KVDLALDDIQGVQALYGSNPNFTIG  231 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~~svM---~p~y~~----~~------------~---~~~l~~dDI~~iq~LYG~~~~~~~~  231 (261)
                      ...+.|||||.||+.|..  +.||   |+++.-    .+            +   +-+.++.-+++++-+|-+..+-..+
T Consensus       302 lGA~~HElGH~lgcpHq~--~GvMlrgy~~lNRsftt~e~~~vrt~s~g~aPv~~keec~w~~lD~~Rf~yhp~f~lp~d  379 (614)
T KOG4525|consen  302 LGAVCHELGHCLGCPHQS--EGVMLRGYDYLNRSFTTDEFECVRTGSKGLAPVLAKEECPWRILDARRFSYHPTFSLPGD  379 (614)
T ss_pred             HHHHHHHhhhccCCCCCC--CceEecCchhhcceeeecceeeeecCCcCcCCccccccCchhhhhhhhhcccccccCCCC
Confidence            468899999999999975  5688   443321    00            1   2346778899999999877666555


Q ss_pred             CC
Q 043639          232 SL  233 (261)
Q Consensus       232 ~~  233 (261)
                      ++
T Consensus       380 pt  381 (614)
T KOG4525|consen  380 PT  381 (614)
T ss_pred             CC
Confidence            44

>PF11150 DUF2927: Protein of unknown function (DUF2927); InterPro: IPR021323 This family is conserved in Proteobacteria

Probab=95.03  E-value=0.69  Score=40.50  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             CcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCC---------C
Q 043639           59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGD---------G  129 (261)
Q Consensus        59 ~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd---------~  129 (261)
                      .||.+.    |+..+..  .+. -......+.+..-++.-..++.+.+..+... .|+|.|.|...+...         .
T Consensus        28 ~Rw~~P----Vrv~v~~--~~~-~~~~~d~~~v~~~~~rL~~itg~~I~~~~~~-~aN~~v~~~~~~~~~~~ir~~~p~~   99 (213)
T PF11150_consen   28 RRWEGP----VRVRVEG--VPP-ADRARDLARVRAYLARLRRITGHPISQVSSP-NANFHVIFVSEDDWRPRIRRLLPGA   99 (213)
T ss_pred             ccCCCC----eEEEEec--cCh-hhHHHHHHHHHHHHhhhccccCCceeeccCC-CCcEEEEEeccchhhHHHHHhcccc
Confidence            589976    8888872  111 1123445566666788888999999998864 999999998765411         0


Q ss_pred             CCcc--------CCCCceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCC-CC-CCCCcccc
Q 043639          130 EPFD--------GVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH-SP-VKEAVMYP  199 (261)
Q Consensus       130 ~~fd--------G~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~H-s~-~~~svM~p  199 (261)
                      ..+.        -....+..++....+.+.....-.. +...    ...--+...+..||-.+|||.- +. .+.||-+ 
T Consensus       100 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~vi~-i~~~----~~~~~~~~Ci~EElaQ~LGl~NDs~~~~pSIFN-  173 (213)
T PF11150_consen  100 ACFVVPNFSSLPRYARCLVFARSNWSGEITRARAVIF-IRAD----HPPQERRDCIHEELAQGLGLPNDSPRARPSIFN-  173 (213)
T ss_pred             ccccchhhhcccccceEEEEEEecCCCceEEEEEEEE-Eecc----CCchHHHHHHHHHHHHHcCCccCCCcCCCceee-
Confidence            0010        0011122222221111111000000 0000    0122356788889999999952 22 2233322 


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHhCCC
Q 043639          200 TLKPRDKKVDLALDDIQGVQALYGSN  225 (261)
Q Consensus       200 ~y~~~~~~~~l~~dDI~~iq~LYG~~  225 (261)
                         -+.....|+..|..-|+.||-+.
T Consensus       174 ---Dd~~~~~LT~~D~lLLr~LYdP~  196 (213)
T PF11150_consen  174 ---DDNEFALLTGFDELLLRMLYDPR  196 (213)
T ss_pred             ---CCCccccccHHHHHHHHHHcCcc
Confidence               22345578999999999999864

Several members are described as being putative lipoproteins, but otherwise the function is not known.

>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases

Probab=94.63  E-value=0.027  Score=49.46  Aligned_cols=81  Identities=22%  Similarity=0.339  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhHhcC---CceEEEcC-----CCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCCceeeeccccccc
Q 043639           88 KAVFKRAFSKWASVI---PVSFIETD-----DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWA  159 (261)
Q Consensus        88 ~~~i~~Af~~Ws~vt---~l~F~ev~-----~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~G~vhfd~~e~wt  159 (261)
                      +--++..|++|+++.   +++=.|+.     +.+-.|++|.-..|.-+|.             |-|.+-.+.+.++.. .
T Consensus        18 q~~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~LtDH-------------YdP~~k~vrLS~~vy-~   83 (222)
T PF04298_consen   18 QWWVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGELTDH-------------YDPRNKVVRLSEDVY-N   83 (222)
T ss_pred             HHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCCCCCC-------------cCCCCCEEEeCCccC-C
Confidence            345677788888763   23222332     2345677887666544442             344444444433211 0


Q ss_pred             ccCCCCCCCccccchhhhhhhhhhhcCCCCCCC
Q 043639          160 VDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV  192 (261)
Q Consensus       160 ~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~  192 (261)
                              ....--..|++||.|||+  .|...
T Consensus        84 --------~~SiaAvaVAAHEvGHAi--Q~a~~  106 (222)
T PF04298_consen   84 --------GRSIAAVAVAAHEVGHAI--QHAEG  106 (222)
T ss_pred             --------CCCHHHHHHHHHHHhHHH--hcccc
Confidence                    012223579999999995  66654

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.59  E-value=0.015  Score=53.59  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=14.8

Q ss_pred             ccchhhhhhhhhhhcCCCCC
Q 043639          171 VDLESVAVHEIGHLLGLTHS  190 (261)
Q Consensus       171 ~~l~~Va~HEiGHaLGL~Hs  190 (261)
                      .....+++||+||++||.|-
T Consensus       191 ~s~~~~f~HE~GH~~GL~H~  210 (305)
T PF10462_consen  191 YSYGNEFSHELGHNFGLGHY  210 (305)
T ss_dssp             S-SHHHHHHHHHHTTT--SS
T ss_pred             cCccceeehhhhhhcCCCCC
Confidence            34568999999999999994

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.

>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.47  E-value=0.02  Score=53.02  Aligned_cols=19  Identities=42%  Similarity=0.566  Sum_probs=17.0

Q ss_pred             chhhhhhhhhhhcCCCCCC
Q 043639          173 LESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~  191 (261)
                      -..|++||+||-|||.|+.
T Consensus       150 ~~~~~~HElgHN~GL~Ha~  168 (314)
T PF05548_consen  150 DWATIMHELGHNLGLWHAG  168 (314)
T ss_pred             cHHHHHHHhhhhccccccC
Confidence            3579999999999999995

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].

>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised

Probab=93.87  E-value=0.029  Score=53.90  Aligned_cols=23  Identities=39%  Similarity=0.658  Sum_probs=19.5

Q ss_pred             hhhhhhhhhhhcCCCCCCCCCCccc
Q 043639          174 ESVAVHEIGHLLGLTHSPVKEAVMY  198 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~~svM~  198 (261)
                      ....+|||||++||.|..+  .||-
T Consensus       317 iGA~lHEiGH~fg~pH~~~--GIM~  339 (423)
T PF12044_consen  317 IGAFLHEIGHLFGCPHQED--GIML  339 (423)
T ss_pred             hHHHHHHHHHhcCCCCCCC--Ceee
Confidence            4579999999999999965  7773

However, it does contain an HEXXH motif characteristic of metallopeptidases. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 625 to 773 amino acids in length.

>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain

Probab=93.46  E-value=0.023  Score=51.80  Aligned_cols=19  Identities=42%  Similarity=0.513  Sum_probs=16.6

Q ss_pred             hhhhhhhhhhhcCCCCCCC
Q 043639          174 ESVAVHEIGHLLGLTHSPV  192 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~  192 (261)
                      ..|++||+||.|||.+--+
T Consensus       166 igv~~HE~gH~lGLPDlY~  184 (286)
T TIGR03296       166 VGVIAHELGHDLGLPDLYD  184 (286)
T ss_pred             eeeeehhhhcccCCCcccc
Confidence            6899999999999987654

This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.

>COG2738 Predicted Zn-dependent protease [General function prediction only]

Probab=93.27  E-value=0.063  Score=46.20  Aligned_cols=78  Identities=19%  Similarity=0.334  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhHhcC---CceEEEcC-----CCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCCceeeecccccc
Q 043639           87 IKAVFKRAFSKWASVI---PVSFIETD-----DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETW  158 (261)
Q Consensus        87 ~~~~i~~Af~~Ws~vt---~l~F~ev~-----~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~G~vhfd~~e~w  158 (261)
                      .+.-++.++++|++|.   +++=.||.     ..+--|+.+.-.+|...|             -|-|..-.+.+.+ .++
T Consensus        20 AQ~kvks~y~KySkV~~s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~LTD-------------HYDP~~kvvrLSe-~~y   85 (226)
T COG2738          20 AQSKVKSTYKKYSKVRASSGLTGAEVARMILDENGLYDVPVEEVPGTLTD-------------HYDPRRKVVRLSE-ANY   85 (226)
T ss_pred             HHHHHHHHHHHHhhccCcCCCcHHHHHHHHHhhcCCccceeeeecCCccc-------------ccChhhheeeccc-ccc
Confidence            4567789999999984   34434443     124456666654443222             2333322222211 111


Q ss_pred             cccCCCCCCCccccchhhhhhhhhhhcC
Q 043639          159 AVDFGSEKSPVAVDLESVAVHEIGHLLG  186 (261)
Q Consensus       159 t~~~~~~~~~~~~~l~~Va~HEiGHaLG  186 (261)
                      .        ....--..|++||.|||+=
T Consensus        86 ~--------g~Sia~~aVAAHEVGHAiQ  105 (226)
T COG2738          86 Y--------GPSIAAIAVAAHEVGHAIQ  105 (226)
T ss_pred             C--------CccHHHHHHHHHHhhHHHh
Confidence            0        0122236899999999964

>PTZ00337 surface protease GP63; Provisional

Probab=92.63  E-value=0.2  Score=49.98  Aligned_cols=36  Identities=31%  Similarity=0.488  Sum_probs=24.3

Q ss_pred             CCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCC
Q 043639          145 PESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS  190 (261)
Q Consensus       145 P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs  190 (261)
                      |-.|.|.|+....   .       .......|++|||.||||+...
T Consensus       211 Pi~G~in~np~~i---~-------~~~~~~~v~~HEi~HALGFs~~  246 (567)
T PTZ00337        211 PFAAAVNFDPRQI---A-------VTNGDVRVAAHELGHALGFVRD  246 (567)
T ss_pred             ceEEEEEECHHHc---c-------chhHHHHHHHHHHHHHHccCHH
Confidence            4447788876432   0       0223578999999999999654

>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional

Probab=92.46  E-value=0.3  Score=49.02  Aligned_cols=96  Identities=21%  Similarity=0.230  Sum_probs=49.9

Q ss_pred             CcceEEEeeecCCCCCCCccCCCCceeeec--------CCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhc
Q 043639          114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSF--------SPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLL  185 (261)
Q Consensus       114 ~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~--------~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaL  185 (261)
                      ++|+.|......      +.  .+++|.|-        .|..|.+.|+....   ..     ........|++|||.|+|
T Consensus       205 naD~vLYVta~P------~~--~~~lA~A~~C~~~~d~RPi~G~iNinp~~i---~s-----~~~~~~~rv~~HEi~HAL  268 (622)
T PTZ00257        205 NADFVLYVASVP------SE--PGVLAWATTCQVFSDDHPAVGVMNIPAANI---VS-----RYDQGTTRTVTHEVAHAL  268 (622)
T ss_pred             ccCEEEEEEEec------CC--CCeeEEEEEeccccCCCceEEEEeeCHHHC---CC-----ccchHHHHHHHHHHHHHh
Confidence            566665554332      21  25666553        24457788876432   00     012235789999999999


Q ss_pred             CCCCCCCCCCccccccCC-CCCCC----CCCHHHHHHHHHHhCCC
Q 043639          186 GLTHSPVKEAVMYPTLKP-RDKKV----DLALDDIQGVQALYGSN  225 (261)
Q Consensus       186 GL~Hs~~~~svM~p~y~~-~~~~~----~l~~dDI~~iq~LYG~~  225 (261)
                      |+.-+....--|.-.... ....+    ..++.-++..++-||.+
T Consensus       269 GFS~~~f~~~~~~~~~~~~rGk~~~~~vi~SP~v~~~Ar~hfgC~  313 (622)
T PTZ00257        269 GFSSVFFENAGIVKSVTNLRGKPFAAPVINSSTAVAKAREQYGCP  313 (622)
T ss_pred             cCCHHHHhhcCcccceeccCCCcceeeeecCHHHHHHHHHhcCCC
Confidence            996443222111111110 01111    12566677778888854

>COG3824 Predicted Zn-dependent protease [General function prediction only]

Probab=91.42  E-value=0.077  Score=42.20  Aligned_cols=20  Identities=40%  Similarity=0.735  Sum_probs=16.2

Q ss_pred             cccchhhhhhhhhhhcCCCC
Q 043639          170 AVDLESVAVHEIGHLLGLTH  189 (261)
Q Consensus       170 ~~~l~~Va~HEiGHaLGL~H  189 (261)
                      +.....|++|||||-.||+.
T Consensus       106 gd~vthvliHEIgHhFGLsD  125 (136)
T COG3824         106 GDQVTHVLIHEIGHHFGLSD  125 (136)
T ss_pred             hhHhhhhhhhhhhhhcCCCh
Confidence            33456899999999999974

>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site

Probab=91.41  E-value=0.11  Score=51.29  Aligned_cols=97  Identities=16%  Similarity=0.168  Sum_probs=40.8

Q ss_pred             CcceEEEeeecCCCCCCCccCCCCceeeec--------CCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhc
Q 043639          114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSF--------SPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLL  185 (261)
Q Consensus       114 ~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~--------~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaL  185 (261)
                      ++|+.|.......+        .+++|.|.        -|-.|.|.|+....   ..     .....+..|++|||.|+|
T Consensus       159 ~~D~vlyV~~~~~~--------~~~~A~A~~C~~~~~~RP~~G~in~~p~~i---~~-----~~~~~~~~~~~HEi~HaL  222 (521)
T PF01457_consen  159 NADFVLYVTARPSS--------SSTLAWAAPCQQDSDGRPIAGVININPSYI---PS-----FYFQEFFRTVIHEIAHAL  222 (521)
T ss_dssp             S-SEEEEEE----S--------TT---EEEEEEE-TTS-EEEEEEE--GGG-----------S--HHHHHHHHHHHHHHT
T ss_pred             CccEEEEEEEeecc--------CCceEEEeehhhccCCCCeeEEEEEchhHc---cc-----hhhhcccceeeeeeeeee
Confidence            57776655433221        16777764        13337777766431   10     012345789999999999


Q ss_pred             CCCCCCCCCCccc---cccCCCC--CCCCCCHHHHHHHHHHhCCCC
Q 043639          186 GLTHSPVKEAVMY---PTLKPRD--KKVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       186 GL~Hs~~~~svM~---p~y~~~~--~~~~l~~dDI~~iq~LYG~~~  226 (261)
                      |+.-......-|.   +...+..  ..+--++.=+.-.+.-||.+.
T Consensus       223 GFs~~~~~~~~~~~~~~~~~~~~~~~~~l~tp~v~~~ar~hf~C~~  268 (521)
T PF01457_consen  223 GFSSSFFRYYGMPRTVSNVRGKPTTVTVLVTPNVVEFARKHFGCPT  268 (521)
T ss_dssp             T-SHHHHHHTT-EEEES-GGG-SS-EEEE--HHHHHHHHHHHT-TT
T ss_pred             eecccccccccccccccceeecCceeEEEeCcHHHHHHHHHhCCCc
Confidence            9975211111110   0111100  112235566667788998643

This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.

>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.80  E-value=0.11  Score=52.62  Aligned_cols=51  Identities=20%  Similarity=0.149  Sum_probs=33.4

Q ss_pred             chhhhhhhhhhhcCCCCCCCC------C-----Ccccc-ccCCC---CCCCCCCHHHHHHHHHHhC
Q 043639          173 LESVAVHEIGHLLGLTHSPVK------E-----AVMYP-TLKPR---DKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~------~-----svM~p-~y~~~---~~~~~l~~dDI~~iq~LYG  223 (261)
                      -..|++||+||.|||.---+.      +     ++|.. .|.+.   .....++..-.+-+|..+|
T Consensus       221 giGVfaHEfGH~LGLPDlYDT~~~g~~~~vg~WsLMs~GSw~g~~~g~~p~~~~~~~~~w~k~~lG  286 (645)
T PF05547_consen  221 GIGVFAHEFGHDLGLPDLYDTDYSGGGNGVGFWSLMSSGSWNGKGSGTEPGGFPPYMKAWLKLQLG  286 (645)
T ss_pred             ceEEEEeeccccCCCCCcccCCCCCCCCCcccceecCCCCCCCCCCCCCCCccChhHhHHHhhhcc
Confidence            368999999999999754432      1     57853 45432   1234566677777777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis

>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]

Probab=87.96  E-value=0.46  Score=48.69  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=30.2

Q ss_pred             chhhhhhhhhhhcCCCCCCC-------CCCccccccCCCCCCCCCCHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV-------KEAVMYPTLKPRDKKVDLALDDIQGVQ  219 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~-------~~svM~p~y~~~~~~~~l~~dDI~~iq  219 (261)
                      ...|++|||||.||+.|-..       ..=|| +.+.....+..++.--++.+.
T Consensus       323 ~a~v~AhelgH~lGm~hD~~~c~C~~~~~CiM-~~~~~~~~~~~FS~CS~~~~~  375 (716)
T KOG3607|consen  323 FAVVLAHELGHNLGMIHDESSCSCPSSGLCIM-PEETGFYIPKKFSNCSYQDFE  375 (716)
T ss_pred             HHHHHHHHHHhhcCcccccccccCCCCCcccc-ccccCcCcccccccchHHHHH
Confidence            45799999999999999762       22478 655533334456655555553

>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.61  E-value=0.27  Score=44.50  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=12.9

Q ss_pred             cchhhhhhhhhhhc-CCCCCCCCC
Q 043639          172 DLESVAVHEIGHLL-GLTHSPVKE  194 (261)
Q Consensus       172 ~l~~Va~HEiGHaL-GL~Hs~~~~  194 (261)
                      ....|++||+||++ ||+-.-..+
T Consensus       215 ~~~~v~vHE~GHsf~~LaDEY~~~  238 (264)
T PF09471_consen  215 SFKQVVVHEFGHSFGGLADEYYYG  238 (264)
T ss_dssp             THHHHHHHHHHHHTT------ECS
T ss_pred             cccceeeeecccccccccccccCC
Confidence            45689999999965 566665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.

>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function

Probab=85.79  E-value=0.31  Score=37.41  Aligned_cols=16  Identities=38%  Similarity=0.771  Sum_probs=12.7

Q ss_pred             chhhhhhhhhhhcCCC
Q 043639          173 LESVAVHEIGHLLGLT  188 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~  188 (261)
                      +..|++|||||.+|+.
T Consensus        73 I~~tlvhEiah~fG~~   88 (97)
T PF06262_consen   73 IRDTLVHEIAHHFGIS   88 (97)
T ss_dssp             HHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            4679999999999985

; PDB: 3E11_A.

>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]

Probab=84.10  E-value=0.76  Score=46.34  Aligned_cols=48  Identities=23%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             hhhhhhhhhhhcCCCCCCC----C------CCccccccCCCC--CCCCCCHHHHHHHHHH
Q 043639          174 ESVAVHEIGHLLGLTHSPV----K------EAVMYPTLKPRD--KKVDLALDDIQGVQAL  221 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~----~------~svM~p~y~~~~--~~~~l~~dDI~~iq~L  221 (261)
                      .-|++|||||..|=.|-.+    |      +=|||++-...+  .+-+++.--+..|...
T Consensus       393 ~lt~AHEiGHNfGSpHDp~~ECsPg~~~~GnyiM~a~AtSGd~~NN~kFSpCS~ksI~~V  452 (764)
T KOG3658|consen  393 DLTLAHEIGHNFGSPHDPDIECSPGESQGGNYIMYAYATSGDKPNNKKFSPCSLKSISKV  452 (764)
T ss_pred             heeehhhhccccCCCCCCCCccCCCCCCCCcEEEEEecccCcCccCcccCcchHHHHHHH
Confidence            4599999999999999765    1      238998755432  3456777777766543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=82.85  E-value=0.45  Score=46.16  Aligned_cols=20  Identities=40%  Similarity=0.639  Sum_probs=15.9

Q ss_pred             cccchhhhhhhhhhhcCCCCC
Q 043639          170 AVDLESVAVHEIGHLLGLTHS  190 (261)
Q Consensus       170 ~~~l~~Va~HEiGHaLGL~Hs  190 (261)
                      ...+-+|++|||||..| .|-
T Consensus       127 esElagViAHEigHv~q-rH~  146 (484)
T COG4783         127 ESELAGVIAHEIGHVAQ-RHL  146 (484)
T ss_pred             HHHHHHHHHHHHHHHhh-hhH
Confidence            34678999999999977 554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
2jsd_A	160	Solution Structure Of Mmp20 Complexed With Nngh Len		2e-26
1su3_A	450	X-Ray Structure Of Human Prommp-1: New Insights Int		1e-25
1kbc_A	164	Procarboxypeptidase Ternary Complex Length = 164		2e-25
1bzs_A	165	Crystal Structure Of Mmp8 Complexed With Hmr2909 Le		2e-25
1mnc_A	163	Structure Of Human Neutrophil Collagenase Reveals L		3e-25
1jaq_A	163	Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gl		4e-25
3ayk_A	169	Catalytic Fragment Of Human Fibroblast Collagenase		7e-25
2j0t_A	170	Crystal Structure Of The Catalytic Domain Of Mmp-1		8e-25
1fbl_A	370	Structure Of Full-Length Porcine Synovial Collagena		9e-25
2clt_A	367	Crystal Structure Of The Active Form (Full-Length)		2e-24
2ddy_A	173	Solution Structure Of Matrilysin (Mmp-7) Complexed		2e-24
2y6d_A	174	The Discovery Of Mmp7 Inhibitors Exploiting A Novel		2e-24
1mmp_A	170	Matrilysin Complexed With Carboxylate Inhibitor Len		2e-24
1cgl_A	169	Structure Of The Catalytic Domain Of Fibroblast Col		2e-24
1cge_A	168	Crystal Structures Of Recombinant 19-Kda Human Fibr		4e-24
3tt4_A	159	Human Mmp8 In Complex With L-Glutamate Motif Inhibi		6e-24
1cgf_A	162	Crystal Structures Of Recombinant 19-Kda Human Fibr		1e-23
1a86_A	158	Mmp8 With Malonic And Aspartic Acid Based Inhibitor		3e-23
2y6c_A	165	The Discovery Of Mmp7 Inhibitors Exploiting A Novel		3e-23
3shi_A	156	Crystal Structure Of Human Mmp1 Catalytic Domain At		6e-23
2xs4_A	167	Structure Of Karilysin Catalytic Mmp Domain In Comp		6e-23
2xs3_A	166	Structure Of Karilysin Catalytic Mmp Domain Length		6e-23
2k2g_A	165	Solution Structure Of The Wild-Type Catalytic Domai		8e-23
2z2d_A	164	Solution Structure Of Human Macrophage Elastase (Mm		8e-23
1jiz_A	166	Crystal Structure Analysis Of Human Macrophage Elas		9e-23
3ayu_A	167	Crystal Structure Of Mmp-2 Active Site Mutant In Co		2e-22
2poj_A	164	Nmr Solution Structure Of The Inhibitor-Free State		4e-22
966c_A	157	Crystal Structure Of Fibroblast Collagenase-1 Compl		4e-22
3ba0_A	365	Crystal Structure Of Full-Length Human Mmp-12 Lengt		6e-22
1fls_A	165	Solution Structure Of The Catalytic Fragment Of Hum		9e-22
3kry_A	164	Crystal Structure Of Mmp-13 In Complex With Sc-7808		1e-21
2d1n_A	166	Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Ac		1e-21
2ow9_A	170	Crystal Structure Analysis Of The Mmp13 Catalytic D		1e-21
456c_A	168	Crystal Structure Of Collagenase-3 (Mmp-13) Complex		1e-21
3kec_A	167	Crystal Structure Of Human Mmp-13 Complexed With A		1e-21
1os2_A	165	Ternary Enzyme-Product-Inhibitor Complexes Of Human		1e-21
1eub_A	171	Solution Structure Of The Catalytic Domain Of Human		1e-21
4a7b_A	169	Mmp13 In Complex With A Novel Selective Non Zinc Bi		1e-21
1rmz_A	159	Crystal Structure Of The Catalytic Domain Of Human		1e-21
3f15_A	158	Crystal Structure Of The Catalytic Domain Of Human		1e-21
2wo8_A	164	Mmp12 Complex With A Beta Hydroxy Carboxylic Acid L		2e-21
1ros_A	163	Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dio		2e-21
1qib_A	161	Crystal Structure Of Gelatinase A Catalytic Domain		2e-21
2k9c_A	152	Paramagnetic Shifts In Solid-State Nmr Of Proteins		2e-21
1hov_A	163	Solution Structure Of A Catalytic Domain Of Mmp-2 C		2e-21
1utt_A	159	Crystal Structure Of Mmp-12 Complexed To 2- (1,3-Di		2e-21
3ljz_A	164	Crystal Structure Of Human Mmp-13 Complexed With An		3e-21
4gr8_A	152	Crystal Structure Of The Catalytic Domain Of Human		9e-21
1jk3_A	158	Crystal Structure Of Human Mmp-12 (Macrophage Elast		1e-20
2w0d_A	164	Does A Fast Nuclear Magnetic Resonance Spectroscopy		1e-20
1cxv_A	164	Structure Of Recombinant Mouse Collagenase-3 (Mmp-1		1e-20
1gkc_A	163	Mmp9-inhibitor Complex Length = 163		4e-20
1slm_A	255	Crystal Structure Of Fibroblast Stromelysin-1: The		4e-20
1biw_A	173	Design And Synthesis Of Conformationally-Constraine		5e-20
2d1o_A	171	Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Aci		6e-20
3oho_A	169	Catalytic Domain Of Stromelysin-1 In Complex With N		6e-20
1ums_A	174	Stromelysin-1 Catalytic Domain With Hydrophobic Inh		6e-20
1caq_A	168	X-Ray Structure Of Human Stromelysin Catalytic Doma		7e-20
1gkd_A	163	Mmp9 Active Site Mutant-Inhibitor Complex Length =		8e-20
2ovx_A	159	Mmp-9 Active Site Mutant With Barbiturate Inhibitor		1e-19
1c8t_A	167	Human Stromelysin-1 (E202q) Catalytic Domain Comple		1e-19
1usn_A	165	Crystal Structure Of The Catalytic Domain Of Human		2e-19
1b8y_A	167	X-Ray Structure Of Human Stromelysin Catalytic Doma		2e-19
1uea_A	173	Mmp-3TIMP-1 Complex Length = 173		3e-19
1hv5_A	165	Crystal Structure Of The Stromelysin-3 (Mmp-11) Cat		2e-18
1qia_A	162	Crystal Structure Of Stromelysin Catalytic Domain L		5e-18
1hfs_A	160	Crystal Structure Of The Catalytic Domain Of Human		6e-18
2jnp_A	161	Solution Structure Of Matrix Metalloproteinase 3 (M		6e-18
1q3a_A	165	Crystal Structure Of The Catalytic Domain Of Human		1e-17
1qic_A	161	Crystal Structure Of Stromelysin Catalytic Domain L		1e-17
1rm8_A	169	Crystal Structure Of The Catalytic Domain Of Mmp-16		2e-17
3ma2_D	181	Complex Membrane Type-1 Matrix Metalloproteinase (M		2e-17
3v96_B	165	Complex Of Matrix Metalloproteinase-10 Catalytic Do		2e-17
1bqq_M	174	Crystal Structure Of The Mt1-Mmp--Timp-2 Complex Le		8e-17
1ck7_A	631	Gelatinase A (Full-Length) Length = 631		2e-12
1ck7_A	631	Gelatinase A (Full-Length) Length = 631		3e-06
1eak_A	421	Catalytic Domain Of Prommp-2 E404q Mutant Length =		2e-12
1eak_A	421	Catalytic Domain Of Prommp-2 E404q Mutant Length =		8e-06
1l6j_A	425	Crystal Structure Of Human Matrix Metalloproteinase		4e-10
1l6j_A	425	Crystal Structure Of Human Matrix Metalloproteinase		8e-06
1smp_A	471	Crystal Structure Of A Complex Between Serratia Mar		4e-05
1srp_A	471	Structural Analysis Of Serratia Protease Length = 4		4e-05
1af0_A	471	Serratia Protease In Complex With Inhibitor Length		6e-05
1sat_A	471	Crystal Structure Of The 50 Kda Metallo Protease Fr		8e-05

>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh Length = 160

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 57  GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           G+P+W ++   TL+Y  SK      +   ++    + A   W+S +P+SF+  +  + AD
Sbjct: 1   GEPKWKKN---TLTYRISK--YTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGE-AD 54
Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDL 173
           I I F NGDHGD  PFDG  G LAH+F+P     G  H D AE W +           +L
Sbjct: 55  IMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM------GTNGFNL 108
Query: 174 ESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYG 223
            +VA HE GH LGL HS    A+MYPT K ++     L  DD++G+QALYG
Sbjct: 109 FTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYG 159

>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into Collagenase Action Length = 450

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 98/199 (49%), Gaps = 18/199 (9%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +VL  G PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +  +
Sbjct: 81  FVLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE 135
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
              ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F      
Sbjct: 136 GQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE---- 190
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG--SNP 226
              +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG   NP
Sbjct: 191 --YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQNP 247
Query: 227 NFTIGSLVESDISTNLAVD 245
              IG        + L  D
Sbjct: 248 VQPIGPQTPKACDSKLTFD 266

>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex Length = 164

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           ++L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F     
Sbjct: 1   FMLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        + 
Sbjct: 56  GE-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTS 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
              +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164

>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909 Length = 165

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           ++L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F     
Sbjct: 1   FMLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        + 
Sbjct: 56  GE-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTS 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
              +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164

>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket Length = 163

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 54  LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
           L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F      +
Sbjct: 1   LTPGGPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTGISQGE 55
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
            ADI I FY  DHGDG PFDG  G+LAH+F P     G  H DA ETW        +   
Sbjct: 56  -ADINIAFYQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSAN 108
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 YNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 162

>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2 With The Catalytic Domain Of Matrix Metallo Proteinase-8 (Met80 Form) Length = 163

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 53  VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
           +L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F      
Sbjct: 1   MLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQG 55
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
           + ADI I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        +  
Sbjct: 56  E-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSA 108
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
             +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 NYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163

>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase Complexed With Cgs-27023a, Nmr, Minimized Average Structure Length = 169

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 53  VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
           VL  G PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +  + 
Sbjct: 1   VLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEG 55
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
             ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F       
Sbjct: 56  Q-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------R 108
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
             +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG + N
Sbjct: 109 EYNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 165

>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In Complex With The Inhibitory Domain Of Timp-1 Length = 170

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 53  VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
           VL  G PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +  + 
Sbjct: 2   VLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEG 56
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
             ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F       
Sbjct: 57  Q-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------R 109
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
             +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG + N
Sbjct: 110 EYNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 166

>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase (Mmp1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller Length = 370

Iteration: 1
 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +VL PG PRW       L+Y    EN    L   D+    ++AF  W++V P++F +  +
Sbjct: 1   FVLTPGNPRWEN---THLTYRI--ENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
              ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F      
Sbjct: 56  GQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFRD---- 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
              +L  VA HE+GH LGL+HS    A+MYP        V L+ DDI G+QA+YG + N
Sbjct: 111 --YNLYRVAAHELGHSLGLSHSTDIGALMYPNYI-YTGDVQLSQDDIDGIQAIYGPSEN 166

>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of Human Fibroblast Collagenase. Length = 367

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 97/199 (48%), Gaps = 18/199 (9%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +VL  G PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +  +
Sbjct: 1   FVLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
              ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F      
Sbjct: 56  GQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE---- 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG--SNP 226
              +L  VA H +GH LGL+HS    A+MYP+       V LA DDI G+QA+YG   NP
Sbjct: 111 --YNLHRVAAHALGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQNP 167
Query: 227 NFTIGSLVESDISTNLAVD 245
              IG        + L  D
Sbjct: 168 VQPIGPQTPKACDSKLTFD 186

>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To Constraint Conformational Sulfonamide Inhibitor Length = 173

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y LFP  P+WT  V      +++++      HIT +  +  +A + W   IP+ F +   
Sbjct: 1   YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 54
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
           +  ADI IGF  G HGD  PFDG    LAH+F+P +   G  H D  E W     ++ S 
Sbjct: 55  WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 109
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
           + ++    A HE+GH LG+ HS    AVMYPT    D +   L+ DDI+G+Q LYG   N
Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 169

>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel Selectivity Trigger Length = 174

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y LFP  P+WT  V      +++++      HIT +  +  +A + W   IP+ F +   
Sbjct: 2   YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
           +  ADI IGF  G HGD  PFDG    LAH+F+P +   G  H D  E W     ++ S 
Sbjct: 56  WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
           + ++    A HE+GH LG+ HS    AVMYPT    D +   L+ DDI+G+Q LYG   N
Sbjct: 111 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 170

>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y LFP  P+WT  V      +++++      HIT +  +  +A + W   IP+ F +   
Sbjct: 1   YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 54
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
           +  ADI IGF  G HGD  PFDG    LAH+F+P +   G  H D  E W     ++ S 
Sbjct: 55  WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 109
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
           + ++    A HE+GH LG+ HS    AVMYPT    D +   L+ DDI+G+Q LYG   N
Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 169

>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast Collagenase Complexed With An Inhibitor Length = 169

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 53  VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
           VL  G PRW +     L Y    EN    L   D+    ++AF  W+ V P++F +  + 
Sbjct: 1   VLTEGNPRWEQ---THLRYRI--ENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSEG 55
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
             ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F       
Sbjct: 56  Q-ADIMISFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWTNNF------R 108
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
             +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG + N
Sbjct: 109 EYNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 165

>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast Collagenase Complexed To Itself Length = 168

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 54  LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
           L  G PRW +     L Y    EN    L   D+    ++AF  W++V P++F +  +  
Sbjct: 1   LTEGNPRWEQ---THLRYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ 55
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
            ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F        
Sbjct: 56  -ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------RE 108
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
            +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG + N
Sbjct: 109 YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 164

>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor Length = 159

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 57  GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           G P+W R     L+Y     N    L   +++   K AF  W+   P+ F      + AD
Sbjct: 1   GNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGE-AD 54
Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDL 173
           I I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        +    +L
Sbjct: 55  INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSANYNL 108
Query: 174 ESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
             VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 159

>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast Collagenase Complexed To Itself Length = 162

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 54  LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
           L  G PRW +     L Y    EN    L   D+    ++AF  W++V P++F +  +  
Sbjct: 1   LTEGNPRWEQ---THLRYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ 55
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
            ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F        
Sbjct: 56  -ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------RE 108
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
            +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG
Sbjct: 109 YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 160

>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor Length = 158

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 58  KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADI 117
            P+W R     L+Y     N    L   +++   K AF  W+   P+ F      + ADI
Sbjct: 1   NPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGE-ADI 54
Query: 118 RIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLE 174
            I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        +    +L 
Sbjct: 55  NIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSANYNLF 108
Query: 175 SVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 LVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 158

>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel Selectivity Trigger Length = 165

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y LFP  P+WT  V      +++++      HIT +  +  +A + W   IP+ F +   
Sbjct: 2   YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
           +  ADI IGF  G HGD  PFDG    LAH+F+P +   G  H D  E W     ++ S 
Sbjct: 56  WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALY 222
           + ++    A HE+GH LG+ HS    AVMYPT    D +   L+ DDI+G+Q LY
Sbjct: 111 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165

>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A Resolution Length = 156

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 58  KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADI 117
            PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +  +   ADI
Sbjct: 1   NPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADI 54
Query: 118 RIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLE 174
            I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F         +L 
Sbjct: 55  MISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------REYNLH 108
Query: 175 SVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
            VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG
Sbjct: 109 RVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 156

>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex With Magnesium Length = 167

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 14/153 (9%)
Query: 77  NMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVL 136
           N  ++L  T+ +   + AF+ W+    +SFI+  + + ADI+I +  G+HGDG PFDG  
Sbjct: 19  NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT 78
Query: 137 GVLAHSFSPE------SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS 190
           G+LAH+F P       +G  H D  E W+++ GS      +DL +VA HEIGHLLG+ HS
Sbjct: 79  GILAHAFYPPPAGGNYAGHLHFDDDENWSIN-GS-----GIDLITVAAHEIGHLLGIEHS 132
Query: 191 PVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
            V  A+MYP      +++D   DD   V  LYG
Sbjct: 133 NVSSALMYPYYTGIKRQLD--NDDCLAVWDLYG 163

>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain Length = 166

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 14/153 (9%)
Query: 77  NMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVL 136
           N  ++L  T+ +   + AF+ W+    +SFI+  + + ADI+I +  G+HGDG PFDG  
Sbjct: 19  NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT 78
Query: 137 GVLAHSFSPE------SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS 190
           G+LAH+F P       +G  H D  E W+++ GS      +DL +VA HEIGHLLG+ HS
Sbjct: 79  GILAHAFYPPPAGGNYAGHLHFDDDENWSIN-GS-----GIDLITVAAHEIGHLLGIEHS 132
Query: 191 PVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
            V  A+MYP      +++D   DD   V  LYG
Sbjct: 133 NVSSALMYPYYTGIKRQLD--NDDCLAVWDLYG 163

>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of Human Matrix Metalloproteinase 12 (Mmp-12) In Complex With A Tight-Binding Inhibitor Length = 165

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 56  PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
           PG P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    A
Sbjct: 6   PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 59
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
           DI + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +
Sbjct: 60  DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 113
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           L   AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 114 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165

>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12) Catalytic Domain Complexed With A Gamma-Keto Butanoic Acid Inhibitor Length = 164

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 56  PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
           PG P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    A
Sbjct: 5   PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 58
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
           DI + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +
Sbjct: 59  DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 112
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           L   AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 113 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164

>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase Mmp- 12 Length = 166

Iteration: 1
 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 56  PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
           PG P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    A
Sbjct: 6   PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 59
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
           DI + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +
Sbjct: 60  DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 113
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           L   AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 114 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165

>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex With App- Drived Decapeptide Inhibitor Length = 167

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFIE 108
           Y  FP KP+W ++    ++Y      +I Y    D + V   F RAF  W+ V P+ F  
Sbjct: 1   YNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSE 165
             D + ADI I F   +HGDG PFDG  G+LAH+F+P +   G  H D  E W +  G  
Sbjct: 53  IHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKG-- 109
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
              V   L  VA H  GH +GL HS    A+M P +    K   L+ DDI+G+Q LYG++
Sbjct: 110 ---VGYSLFLVAAHAFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGAS 165
Query: 226 PN 227
           P+
Sbjct: 166 PD 167

>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of Macrophage Metalloelastase (Mmp-12) Length = 164

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 56  PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
           PG P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    A
Sbjct: 5   PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 58
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
           DI + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +
Sbjct: 59  DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 112
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           L   AVH IGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 113 LFLTAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164

>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To A Diphenyl-Ether Sulphone Based Hydroxamic Acid Length = 157

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 80/151 (52%), Gaps = 11/151 (7%)
Query: 76  ENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGV 135
           EN    L   D+    ++AF  W++V P++F +  +   ADI I F  GDH D  PFDG 
Sbjct: 12  ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISFVRGDHRDNSPFDGP 70
Query: 136 LGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV 192
            G LAH+F P     G  H D  E W  +F         +L  VA HE+GH LGL+HS  
Sbjct: 71  GGNLAHAFQPGPGIGGDAHFDEDERWTNNF------REYNLHRVAAHELGHSLGLSHSTD 124
Query: 193 KEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
             A+MYP+       V LA DDI G+QA+YG
Sbjct: 125 IGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 154

>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12 Length = 365

Iteration: 1
 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 24/193 (12%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGS--------NP 226
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG         NP
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKENQRLPNP 169
Query: 227 NFTIGSLVESDIS 239
           + +  +L + ++S
Sbjct: 170 DNSEPALCDPNLS 182

>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid Inhibitor Length = 165

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080 Length = 164

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid Inhibitor Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain In Complex With Specific Inhibitor Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 4   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 55
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 56  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 108
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 109 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 167

>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A Diphenyl-Ether Sulphone Based Hydroxamic Acid Length = 168

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A Phenyl-2h-Tetrazole Compound Length = 167

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12 Length = 165

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 4   PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 57
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 58  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 111
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 112 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 160

>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human Collagenase-3 (Mmp-13) Complexed To A Potent Non-Peptidic Sulfonamide Inhibitor Length = 171

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding Inhibitor Cmpd22 Length = 169

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12 Complexed With The Inhibitor Nngh At 1.3 A Resolution Length = 159

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 3   PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 56
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 57  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 110
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159

>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12 Complexed With The Inhibitor (S)-N-(2,3-Dihydroxypropyl)-4- Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide Length = 158

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158

>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid Length = 164

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 3   PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 56
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 57  VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 110
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159

>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3- Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1, 1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid Length = 163

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158

>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain Length = 161

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 58  KPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFIETDDYDF 114
           KP+W ++    ++Y      +I Y    D + V   F RAF  W+ V P+ F    D + 
Sbjct: 2   KPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGE- 52
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAV 171
           ADI I F   +HGDG PFDG  G+LAH+F+P +   G  H D  E W++  G     V  
Sbjct: 53  ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWSLGKG-----VGY 107
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNP 226
            L  VA HE GH +GL HS    A+M P +    K   L+ DDI+G+Q LYG++P
Sbjct: 108 SLFLVAAHEFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASP 161

>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To Elicit Structural Information Length = 152

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 86  DIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP 145
           D+    ++AF  W++V P+ F + +    ADI + F  G HGD   FDG  G+LAH+F P
Sbjct: 18  DVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAFGP 76
Query: 146 ES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLK 202
            S   G  H D  E W    G        +L   AVHEIGH LGL HS   +AVM+PT K
Sbjct: 77  GSGIGGDAHFDEDEFWTTHSG------GTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 130
Query: 203 PRD-KKVDLALDDIQGVQALYG 223
             D     L+ DDI+G+Q+LYG
Sbjct: 131 YVDINTFRLSADDIRGIQSLYG 152

>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2 Complexed With Sc-74020 Length = 163

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFIE 108
           Y  FP KP+W ++    ++Y      +I Y    D + V   F RAF  W+ V P+ F  
Sbjct: 2   YNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSR 53
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSE 165
             D + ADI I F   +HGDG PFDG  G+LAH+F+P +   G  H D  E W       
Sbjct: 54  IHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWT------ 106
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
            +     L  VA HE GH +GL HS    A+M P +    K   L+ DDI+G+Q LYG
Sbjct: 107 NTSANYSLFLVAAHEFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYG 163

>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2- (1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4- (4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid Length = 159

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158

>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An Amino-2-Indanol Compound Length = 164

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 92/177 (51%), Gaps = 22/177 (12%)
Query: 54  LFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETD 110
           +FP   +W++   M L+Y      ++NY   +  ++++  FK+AF  W+ V P++F    
Sbjct: 3   VFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH 54
Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
           D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW        S
Sbjct: 55  D-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------SS 107
Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
               +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG
Sbjct: 108 SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164

>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12 In Complex With Selective Phosphinic Inhibitor Rxp470c Length = 152

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 86  DIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP 145
           D+    ++AF  W++V P+ F + +    ADI + F  G HGD   FDG  G+LAH+F P
Sbjct: 19  DVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAFGP 77
Query: 146 ES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLK 202
            S   G  H D  E W    G        +L   AVHEIGH LGL HS   +AVM+PT K
Sbjct: 78  GSGIGGDAHFDEDEFWTTHSG------GTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 131
Query: 203 PRD-KKVDLALDDIQGVQALY 222
             D     L+ DDI+G+Q+LY
Sbjct: 132 YVDINTFRLSADDIRGIQSLY 152

>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At True Atomic Resolution Length = 158

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVH IGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 110 TAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158

>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And X-Ray Crystallography Hybrid Approach Provide Reliable Structural Information Of Ligand-Protein Complexes? A Case Study Of Metalloproteinases. Length = 164

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H        +   N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 3   PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 56
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 57  VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 110
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVH IGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 111 TAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159

>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13) Length = 164

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
           Y +FP   +W++     L+Y      ++NY   +  ++++  F++AF  W+ V P++F  
Sbjct: 1   YNVFPRTLKWSQ---TNLTY-----RIVNYTPDMSHSEVEKAFRKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
             D   ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW       
Sbjct: 53  IYD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
            S    +L  VA HE+GH LGL HS    A+M+P      K    L  DD+QG+Q LYG
Sbjct: 106 SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 164

>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex Length = 163

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
           F G  +W  H     +  +  +N    L    I   F RAF+ W++V P++F      D 
Sbjct: 5   FEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 58
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAV 171
           ADI I F   +HGDG PFDG  G+LAH+F P     G  H D  E W++  G   S    
Sbjct: 59  ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---- 114
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
            L  VA HE GH LGL HS V EA+MYP  +  +    L  DD+ G++ LY
Sbjct: 115 -LFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGP-PLHKDDVNGIRHLY 163

>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The C-Truncated Human Proenzyme Length = 255

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 86  FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 137
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 138 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 190
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 191 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 250
Query: 227 N 227
           +
Sbjct: 251 D 251

>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp Inhibitors Length = 173

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
           +
Sbjct: 169 D 169

>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid Inhibitor Length = 171

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
           +
Sbjct: 169 D 169

>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
           +
Sbjct: 169 D 169

>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr Ensemble Of 20 Structures Length = 174

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
           +
Sbjct: 169 D 169

>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain Complexes With Non-Peptide Inhibitors: Implication For Inhibitor Selectivity Length = 168

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168

>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex Length = 163

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
           F G  +W  H     +  +  +N    L    I   F RAF+ W++V P++F      D 
Sbjct: 5   FEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 58
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAV 171
           ADI I F   +HGDG PFDG  G+LAH+F P     G  H D  E W++  G   S    
Sbjct: 59  ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---- 114
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
            L  VA H+ GH LGL HS V EA+MYP  +  +    L  DD+ G++ LY
Sbjct: 115 -LFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGP-PLHKDDVNGIRHLY 163

>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor Length = 159

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
           F G  +W  H     +  +  +N    L    I   F RAF+ W++V P++F      D 
Sbjct: 1   FEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 54
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAV 171
           ADI I F   +HGDG PFDG  G+LAH+F P     G  H D  E W++  G   S    
Sbjct: 55  ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---- 110
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
            L  VA H+ GH LGL HS V EA+MYP  +  +    L  DD+ G++ LY
Sbjct: 111 -LFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPP-LHKDDVNGIRHLY 159

>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed With Ro-26-2812 Length = 167

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 1   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 52
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 53  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 105
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA H+IGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 106 TGTNLFLVAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 165
Query: 227 N 227
           +
Sbjct: 166 D 166

>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Fibroblast Stromelysin-1 Inhibited With Thiadiazole Inhibitor Pnu-142372 Length = 165

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165

>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain Complexed With Non-Peptide Inhibitors: Implications For Inhibitor Selectivity Length = 167

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
              +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165

>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex Length = 173

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K  
Sbjct: 56  GE-ADIXISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
              +L  VA HEIGH LGL HS   EA+ YP         +  L+ DDI G+Q+LYG  P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALXYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
           +
Sbjct: 169 D 169

>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic Domain Complexed With A Phosphinic Inhibitor Length = 165

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 87  IKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE 146
           ++     A   W+ V P++F E  +   ADI I F    HGD  PFDG  G+LAH+F P+
Sbjct: 30  VRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLPFDGPGGILAHAFFPK 88
Query: 147 S---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP 203
           +   G  H D  ETW +  G  +     DL  VA HE GH+LGL H+   +A+M P    
Sbjct: 89  THREGDVHFDYDETWTI--GDNQ---GTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF 143
Query: 204 RDKKVDLALDDIQGVQALYG 223
           R   + L+ DD +G+Q LYG
Sbjct: 144 R-YPLSLSPDDRRGIQHLYG 162

>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain Length = 162

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 87  IKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE 146
           + +  ++A   W  V P++F    + + ADI I F   +HGD  PFDG   VLAH+++P 
Sbjct: 25  VDSAVEKALKVWEEVTPLTFSRLYEGE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 83
Query: 147 ---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP 203
              +G  H D  E W       K     +L  VA HEIGH LGL HS   EA+MYP    
Sbjct: 84  PGINGDAHFDDDEQWT------KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 137
Query: 204 RD--KKVDLALDDIQGVQALYGSNP 226
                +  L+ DDI G+Q+LYG  P
Sbjct: 138 LTDLTRFRLSQDDINGIQSLYGPPP 162

>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Fibroblast Stromelysin-1 Inhibited With The N-Carboxy-Alkyl Inhibitor L-764,004 Length = 160

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 57  GKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
           G P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    + +
Sbjct: 1   GIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGE 52
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
            ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K    
Sbjct: 53  -ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDTTG 105
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
            +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG
Sbjct: 106 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160

>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3) In The Presence Of N-Isobutyl-N-[4- Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh) Length = 161

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 57  GKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
           G P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    + +
Sbjct: 1   GIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGE 52
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
            ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W       K    
Sbjct: 53  -ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDTTG 105
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
            +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG
Sbjct: 106 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160

>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix Metalloproteinase 10 Length = 165

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGMPKWRK---THLTY-----RIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF---HLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD   FDG    LAH++ P  G +   H D  E W  D       
Sbjct: 56  GE-ADIMISFAVKEHGDNYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTED------A 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK--KVDLALDDIQGVQALYG 223
              +L  VA HE+GH LGL HS   EA+MYP      +  +  L+ DD+ G+Q+LYG
Sbjct: 109 SGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165

>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain Length = 161

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 87  IKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE 146
           + +  ++A   W  V P++F    + + ADI I F   +HGD  PFDG   VLAH+++P 
Sbjct: 25  VDSAVEKALKVWEEVTPLTFSRLYEGE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 83
Query: 147 ---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP 203
              +G  H D  E W       K     +L  VA HEIGH LGL HS   EA+MYP    
Sbjct: 84  PGINGDAHFDDDEQWT------KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 137
Query: 204 RD--KKVDLALDDIQGVQALYG 223
                +  L+ DDI G+Q+LYG
Sbjct: 138 LTDLTRFRLSQDDINGIQSLYG 159

>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3- Mmp: Characterization Of Mt-Mmp Specific Features Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 72  AFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF------ADIRIGFYNGD 125
            +S +N+   +   + +   +RAF  W +V P++F E    +        DI I F +G 
Sbjct: 10  TYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGF 69
Query: 126 HGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIG 182
           HGD  PFDG  G LAH++ P     G  H D+ E W +      +    DL  VAVHE+G
Sbjct: 70  HGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTL---GNPNHDGNDLFLVAVHELG 126
Query: 183 HLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           H LGL HS    A+M P  +  +     L  DD+QG+Q +YG
Sbjct: 127 HALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYG 168

>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp) With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1) Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 92  KRAFSKWASVIPVSFIETDDYDF--------ADIRIGFYNGDHGDGEPFDGVLGVLAHSF 143
           ++AF  W S  P+ F E   Y +        ADI I F  G HGD  PFDG  G LAH++
Sbjct: 34  RKAFRVWESATPLRFREVP-YAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAY 92
Query: 144 SPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPT 200
            P     G  H D+AE W V     +     D+  VAVHE+GH LGL HS    A+M P 
Sbjct: 93  FPGPNIGGDTHFDSAEPWTV---RNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPF 149
Query: 201 LKPRD-KKVDLALDDIQGVQALYGSNPNF 228
            +  D +   L  DD +G+Q LYG    F
Sbjct: 150 YQWMDTENFVLPDDDRRGIQQLYGGESGF 178

>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain (Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1 (Timp-1) Length = 165

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           FPG P+W +     L+Y      ++NY   L    + +  ++A   W  V P++F    +
Sbjct: 4   FPGMPKWRK---THLTY-----RIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF---HLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGD   FDG    LAH++ P  G +   H D  E W  D       
Sbjct: 56  GE-ADIMISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTED------A 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK--KVDLALDDIQGVQALYG 223
              +L  VA HE+GH LGL HS   EA+MYP      +  +  L+ DD+ G+Q+LYG
Sbjct: 109 SGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165

>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex Length = 174

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 92  KRAFSKWASVIPVSFIETDDYDF--------ADIRIGFYNGDHGDGEPFDGVLGVLAHSF 143
           ++AF  W S  P+ F E   Y +        ADI I F  G HGD  PFDG  G LAH++
Sbjct: 32  RKAFRVWESATPLRFREVP-YAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAY 90
Query: 144 SPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPT 200
            P     G  H D+AE W V     +     D+  VAVHE+GH LGL HS    A+M P 
Sbjct: 91  FPGPNIGGDTHFDSAEPWTV---RNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPF 147
Query: 201 LKPRD-KKVDLALDDIQGVQALYGS 224
            +  D +   L  DD +G+Q LYG 
Sbjct: 148 YQWMDTENFVLPDDDRRGIQQLYGG 172

>pdb|1CK7|A Chain A, Gelatinase A (Full-Length) Length = 631

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFI 107
           +Y  FP KP+W ++    ++Y      +I Y    D + V   F RAF  W+ V P+ F 
Sbjct: 80  NYNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFS 131
Query: 108 ETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGS 164
              D + ADI I F   +HGDG PFDG  G+LAH+F+P +   G  H D  E W +  G 
Sbjct: 132 RIHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQ 190

>pdb|1CK7|A Chain A, Gelatinase A (Full-Length) Length = 631

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGS 232
           VA H  GH +GL HS    A+M P +    K   L+ DDI+G+Q LYG++P+  +G+
Sbjct: 371 VAAHAFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPDIDLGT 426

>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant Length = 421

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFI 107
           +Y  FP KP+W ++    ++Y      +I Y    D + V   F RAF  W+ V P+ F 
Sbjct: 78  NYNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFS 129
Query: 108 ETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGS 164
              D + ADI I F   +HGDG PFDG  G+LAH+F+P +   G  H D  E W +  G 
Sbjct: 130 RIHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQ 188

>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant Length = 421

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
           VA H+ GH +GL HS    A+M P +    K   L+ DDI+G+Q LYG++P+
Sbjct: 369 VAAHQFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPD 419

>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9 (gelatinase B) Length = 425

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +  F G  +W  H     +  +  +N    L    I   F RAF+ W++V P++F     
Sbjct: 88  FQTFEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYS 142
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFG 163
            D ADI I F   +HGDG PFDG  G+LAH+F P     G  H D  E W++  G
Sbjct: 143 RD-ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKG 196

>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9 (gelatinase B) Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
           VA HE GH LGL HS V EA+MYP  +  +    L  DD+ G++ LYG
Sbjct: 379 VAAHEFGHALGLDHSSVPEALMYPMYRFTEGPP-LHKDDVNGIRHLYG 425

>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens Metallo-Protease And An Inhibitor From Erwinia Chrysanthemi Length = 471

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 94/254 (37%), Gaps = 48/254 (18%)
Query: 18  HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
           HE    I +     F  +Q+  +   E  +    Y +F G+P     V +T S   Y FS
Sbjct: 16  HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75  KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
             N+     ++   A      K +   WA V  ++F E      A+I  G Y+ D     
Sbjct: 69  STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
           P     G  A++F P +     D   +TW  V+  + K P   D       HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
           +H         +P    V Y               T    D     A    LDDI  +Q 
Sbjct: 185 SHPGDYNAGEGNPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
           LYG+N +   G  V
Sbjct: 245 LYGANLSTRTGDTV 258

>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease Length = 471

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 94/254 (37%), Gaps = 48/254 (18%)
Query: 18  HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
           HE    I +     F  +Q+  +   E  +    Y +F G+P     V +T S   Y FS
Sbjct: 16  HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75  KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
             N+     ++   A      K +   WA V  ++F E      A+I  G Y+ D     
Sbjct: 69  STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
           P     G  A++F P +     D   +TW  V+  + K P   D       HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
           +H         +P    V Y               T    D     A    LDDI  +Q 
Sbjct: 185 SHPGDYNAGEGNPTYRDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
           LYG+N +   G  V
Sbjct: 245 LYGANLSTRTGDTV 258

>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor Length = 471

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 93/254 (36%), Gaps = 48/254 (18%)
Query: 18  HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
           HE    I +     F  +Q+  +   E  +    Y +F G+P     V +T S   Y FS
Sbjct: 16  HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75  KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
             N+     ++   A      K +   WA V  ++F E      A+I  G Y+ D     
Sbjct: 69  STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
           P     G  A++F P +     D   +TW  V+  + K P   D       HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
           +H          P    V Y               T    D     A    LDDI  +Q 
Sbjct: 185 SHPGDYNAGEGDPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
           LYG+N +   G  V
Sbjct: 245 LYGANLSTRTGDTV 258

>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S. Marcescens Length = 471

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 93/254 (36%), Gaps = 48/254 (18%)
Query: 18  HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
           HE    I +     F  +Q+  +   E  +    Y +F G+P     V +T S   Y FS
Sbjct: 16  HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75  KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
             N+     ++   A      K +   WA V  ++F E      A+I  G Y+ D     
Sbjct: 69  STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
           P     G  A++F P +     D   +TW  V+  + K P   D       HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
           +H          P    V Y               T    D     A    LDDI  +Q 
Sbjct: 185 SHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
           LYG+N +   G  V
Sbjct: 245 LYGANLSTRTGDTV 258

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3ayu_A	167	72 kDa type IV collagenase; protease, hydrolase-hy	5e-51
1cge_A	168	Fibroblast collagenase; hydrolase (metalloprotease	1e-49
830c_A	168	MMP-13, MMP-13; matrix metalloprotease; HET: RS1;	1e-47
2y6d_A	174	Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie	8e-47
1hy7_A	173	Stromelysin-1, MMP-3; mixed alpha beta structure,	9e-47
2xs4_A	167	Karilysin protease; hydrolase, bacterial MMP, viru	1e-46
1i76_A	163	MMP-8;, neutrophil collagenase; hydrolase, complex	6e-45
2jsd_A	160	Matrix metalloproteinase-20; MMP-NNGH, structural	3e-44
1y93_A	159	Macrophage metalloelastase; matrix metalloproteina	5e-43
3ma2_D	181	Matrix metalloproteinase-14; protein - protein com	5e-43
1rm8_A	169	MMP-16, matrix metalloproteinase-16, MT3-MMP; memb	1e-42
1hv5_A	165	Stromelysin 3; inhibition, phosphinic inhibitor, h	2e-42
1slm_A	255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	5e-42
2ovx_A	159	Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9)	1e-41
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	8e-37
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	1e-35
1eak_A	421	72 kDa type IV collagenase; hydrolase-hydrolase in	9e-31
1eak_A	421	72 kDa type IV collagenase; hydrolase-hydrolase in	7e-14
1l6j_A	425	Matrix metalloproteinase-9; twisted beta sheet fla	5e-25
1l6j_A	425	Matrix metalloproteinase-9; twisted beta sheet fla	4e-16
1ck7_A	631	Protein (gelatinase A); hydrolase (metalloprotease	2e-19
1ck7_A	631	Protein (gelatinase A); hydrolase (metalloprotease	4e-16
1k7i_A	479	PROC, secreted protease C; metalloprotease, hydrol	1e-13
1sat_A	471	Serratia protease; parallel beta helix, parallel b	6e-12
1g9k_A	463	Serralysin; beta jelly roll, hydrolase; 1.96A {Pse	3e-10
1kap_P	479	Alkaline protease; calcium binding protein, zinc m	1e-08
3p24_A	397	BFT-3; metzincins, metalloendopeptidase, hydrolase	3e-05

>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A* Length = 167

 Score =  163 bits (414), Expect = 5e-51
 Identities = 66/179 (36%), Positives = 89/179 (49%), Gaps = 15/179 (8%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y  FP KP+W ++    ++Y          L    +   F RAF  W+ V P+ F    D
Sbjct: 1   YNFFPRKPKWDKN---QITYRII--GYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD 55

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
            + ADI I F   +HGDG PFDG  G+LAH+F+P +   G  H D  E W +  G     
Sbjct: 56  GE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKGVGY-- 112

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
               L  VA H  GH +GL HS    A+M P      K   L+ DDI+G+Q LYG++P+
Sbjct: 113 ---SLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYT-KNFRLSQDDIKGIQELYGASPD 167

>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A Length = 168

 Score =  160 bits (405), Expect = 1e-49
 Identities = 69/177 (38%), Positives = 89/177 (50%), Gaps = 16/177 (9%)

Query: 54  LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
           L  G PRW +     L Y     N    L   D+    ++AF  W++V P++F +  +  
Sbjct: 1   LTEGNPRWEQT---HLRYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ 55

Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVA 170
            ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W  +F        
Sbjct: 56  -ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREY----- 109

Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
            +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+QA+YG + N
Sbjct: 110 -NLHRVAAHELGHSLGLSHSTDIGALMYPSYTFS-GDVQLAQDDIDGIQAIYGRSQN 164

>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ... Length = 168

 Score =  155 bits (392), Expect = 1e-47
 Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 16/179 (8%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y +FP   +W++     L+Y     N    +  ++++  FK+AF  W+ V P++F    D
Sbjct: 1   YNVFPRTLKWSKM---NLTYRIV--NYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD 55

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSF---SPESGKFHLDAAETWAVDFGSEKSP 168
              ADI I F   +HGD  PFDG  G+LAH+F       G  H D  ETW          
Sbjct: 56  GI-ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS------ 108

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYGSNP 226
              +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG   
Sbjct: 109 KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGD 167

>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A* Length = 174

 Score =  153 bits (386), Expect = 8e-47
 Identities = 64/182 (35%), Positives = 84/182 (46%), Gaps = 15/182 (8%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y LFP  P+WT      ++Y     +    L    +  +  +A + W   IP+ F +   
Sbjct: 2   YSLFPNSPKWTSK---VVTYRIV--SYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVW 56

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP---ESGKFHLDAAETWAVDFGSEKSP 168
              ADI IGF  G HGD  PFDG    LAH+F+P     G  H D  E W          
Sbjct: 57  -GTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG--- 112

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
             ++    A HE+GH LG+ HS    AVMYPT    D +   L+ DDI+G+Q LYG   N
Sbjct: 113 --INFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 170

Query: 228 FT 229
             
Sbjct: 171 SR 172

>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ... Length = 173

 Score =  153 bits (386), Expect = 9e-47
 Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +  FPG P+W +     L+Y     N    L    + +  ++A   W  V P++F    +
Sbjct: 1   FRTFPGIPKWRKT---HLTYRIV--NYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAV 171
            + ADI I F   +HGD  PFDG   VLAH+++P  G    +    +  D    K     
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGI---NGDAHFDDDEQWTKDTTGT 111

Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNPN 227
           +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P+
Sbjct: 112 NLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 169

>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A Length = 167

 Score =  152 bits (385), Expect = 1e-46
 Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 19/179 (10%)

Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
                +W +    TL Y     N  ++L  T+ +   + AF+ W+    +SFI+  + + 
Sbjct: 2   VLQGSKWNKT---TLKYYIY--NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQ 56

Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE------SGKFHLDAAETWAVDFGSEKSP 168
           ADI+I +  G+HGDG PFDG  G+LAH+F P       +G  H D  E W+++       
Sbjct: 57  ADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSIN------G 110

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
             +DL +VA HEIGHLLG+ HS V  A+MYP      ++  L  DD   V  LYG   +
Sbjct: 111 SGIDLITVAAHEIGHLLGIEHSNVSSALMYPYYTGIKRQ--LDNDDCLAVWDLYGYPFS 167

>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ... Length = 163

 Score =  148 bits (373), Expect = 6e-45
 Identities = 69/175 (39%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 53  VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
           +L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F      
Sbjct: 1   MLTPGNPKWERT---NLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQG 55

Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP---ESGKFHLDAAETWAVDFGSEKSPV 169
           + ADI I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW        +  
Sbjct: 56  E-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSA 108

Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
             +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 109 NYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163

>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens} Length = 160

 Score =  146 bits (368), Expect = 3e-44
 Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 16/171 (9%)

Query: 57  GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           G+P+W ++   TL+Y  S       +   ++    + A   W+S +P+SF+  +  + AD
Sbjct: 1   GEPKWKKN---TLTYRIS--KYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGE-AD 54

Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSP---ESGKFHLDAAETWAVDFGSEKSPVAVDL 173
           I I F NGDHGD  PFDG  G LAH+F+P     G  H D AE W +           +L
Sbjct: 55  IMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMG------TNGFNL 108

Query: 174 ESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            +VA HE GH LGL HS    A+MYPT K ++     L  DD++G+QALYG
Sbjct: 109 FTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYG 159

>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ... Length = 159

 Score =  143 bits (360), Expect = 5e-43
 Identities = 64/169 (37%), Positives = 88/169 (52%), Gaps = 16/169 (9%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 3   PVWRKH---YITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGM-ADIL 56

Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSP---ESGKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P     G  H D  E W    G        +L  
Sbjct: 57  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGT------NLFL 110

Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159

>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M Length = 181

 Score =  143 bits (361), Expect = 5e-43
 Identities = 60/188 (31%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y +     +W  +    +++     N    +         ++AF  W S  P+ F E   
Sbjct: 1   YAI--QGLKWQHN---EITFCIQ--NYTPKVGEYATYEAIRKAFRVWESATPLRFREVPY 53

Query: 112 YD-------FADIRIGFYNGDHGDGEPFDGVLGVLAHSF---SPESGKFHLDAAETWAVD 161
                     ADI I F  G HGD  PFDG  G LAH++       G  H D+AE W V 
Sbjct: 54  AYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVR 113

Query: 162 FGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQA 220
               +     D+  VAVHE+GH LGL HS    A+M P  +  D +   L  DD +G+Q 
Sbjct: 114 ---NEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQ 170

Query: 221 LYGSNPNF 228
           LYG    F
Sbjct: 171 LYGGESGF 178

>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11 Length = 169

 Score =  142 bits (358), Expect = 1e-42
 Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 18/175 (10%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF---- 114
            +W       ++Y+    N+   +   + +   +RAF  W +V P++F E    +     
Sbjct: 2   QKWQHK---HITYSIK--NVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGK 56

Query: 115 --ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPV 169
              DI I F +G HGD  PFDG  G LAH++ P     G  H D+ E W +      +  
Sbjct: 57  RDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGN---PNHD 113

Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
             DL  VAVHE+GH LGL HS    A+M P  +  +     L  DD+QG+Q +YG
Sbjct: 114 GNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYG 168

>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 Length = 165

 Score =  141 bits (356), Expect = 2e-42
 Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +VL     RW +     L+Y          L    ++     A   W+ V P++F E  +
Sbjct: 2   FVLSG--GRWEKT---DLTYRIL--RFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHE 54

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAV 171
              ADI I F    HGD  PFDG  G+LAH+F P++ +      +    +  +       
Sbjct: 55  GR-ADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYD--ETWTIGDNQGT 111

Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
           DL  VA HE GH+LGL H+   +A+M P    R   + L+ DD +G+Q LYG
Sbjct: 112 DLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFR-YPLSLSPDDRRGIQHLYG 162

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 Length = 255

 Score =  143 bits (361), Expect = 5e-42
 Identities = 63/182 (34%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
            +  FPG P+W +             N    L    + +  ++A   W  V P++F    
Sbjct: 82  HFRTFPGIPKWRKTHLTYRIV-----NYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLY 136

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP---ESGKFHLDAAETWAVDFGSEKS 167
           + + ADI I F   +HGD  PFDG   VLAH+++P    +G  H D  E W  D      
Sbjct: 137 EGE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGT-- 193

Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSN 225
               +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  
Sbjct: 194 ----NLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPP 249

Query: 226 PN 227
           P+
Sbjct: 250 PD 251

>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A* Length = 159

 Score =  139 bits (351), Expect = 1e-41
 Identities = 64/171 (37%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
           F G  +W  H    ++Y     N    L    I   F RAF+ W++V P++F      D 
Sbjct: 1   FEGDLKWHHH---NITYWIQ--NYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 54

Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAV 171
           ADI I F   +HGDG PFDG  G+LAH+F P     G  H D  E W++           
Sbjct: 55  ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLG-----KGQGY 109

Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
            L  VA H+ GH LGL HS V EA+MYP  +   +   L  DD+ G++ LY
Sbjct: 110 SLFLVAAHQFGHALGLDHSSVPEALMYPMYRFT-EGPPLHKDDVNGIRHLY 159

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Length = 450

 Score =  134 bits (337), Expect = 8e-37
 Identities = 71/190 (37%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 42  PAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASV 101
           P         +VL  G PRW +     L+Y     N    L   D+    ++AF  W++V
Sbjct: 71  PRCGVPDVAQFVLTEGNPRWEQT---HLTYRIE--NYTPDLPRADVDHAIEKAFQLWSNV 125

Query: 102 IPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETW 158
            P++F +  +   ADI I F  GDH D  PFDG  G LAH+F P     G  H D  E W
Sbjct: 126 TPLTFTKVSEGQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERW 184

Query: 159 AVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGV 218
             +F         +L  VA HE+GH LGL+HS    A+MYP+       V LA DDI G+
Sbjct: 185 TNNFREY------NLHRVAAHELGHSLGLSHSTDIGALMYPSYTFS-GDVQLAQDDIDGI 237

Query: 219 QALYGSNPNF 228
           QA+YG + N 
Sbjct: 238 QAIYGRSQNP 247

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Length = 365

 Score =  129 bits (324), Expect = 1e-35
 Identities = 65/174 (37%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKH---YITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGM-ADIL 55

Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGT------NLFL 109

Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPNF 228
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG     
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKEN 163

>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Length = 421

 Score =  117 bits (293), Expect = 9e-31
 Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 92  KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP------ 145
           +    +W         +   Y F         G + +G P       L + +        
Sbjct: 279 RTDGYRWCGTTEDYDRD-KKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGR 337

Query: 146 ESGKFHLDAAETWAVDF-GSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR 204
             GK        +  D            L  VA H+ GH +GL HS    A+M P     
Sbjct: 338 SDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPI-YTY 396

Query: 205 DKKVDLALDDIQGVQALYGSNPNF 228
            K   L+ DDI+G+Q LYG++P+ 
Sbjct: 397 TKNFRLSQDDIKGIQELYGASPDI 420

>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Length = 421

 Score = 69.9 bits (170), Expect = 7e-14
 Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 9/152 (5%)

Query: 42  PAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASV 101
           P        +Y  FP KP+W ++                 L    +   F RAF  W+ V
Sbjct: 69  PRCGNPDVANYNFFPRKPKWDKNQITYRII-----GYTPDLDPETVDDAFARAFQVWSDV 123

Query: 102 IPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETW 158
            P+ F    D + ADI I F   +HGDG PFDG  G+LAH+F+P     G  H D  E W
Sbjct: 124 TPLRFSRIHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELW 182

Query: 159 AVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS 190
            +  G        + +           G  ++
Sbjct: 183 TLGEGQVVRVKYGNADGEYCKFPFLFNGKEYN 214

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Length = 425

 Score =  101 bits (253), Expect = 5e-25
 Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 15/129 (11%)

Query: 109 TDDYD---------FADIRIGFYNGDHGDGE--PFDGVLGVLAHSFSPESGKFHLDAAET 157
           T +YD                      G+    PF  +    +   S   G   L  A T
Sbjct: 298 TANYDRDKLFGFCPTRADSTVMGGNSAGELCVFPFTFLGKEYSTCTSEGRGDGRLWCATT 357

Query: 158 WAVDF---GSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDD 214
              D              L  VA HE GH LGL HS V EA+MYP  +   +   L  DD
Sbjct: 358 SNFDSDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFT-EGPPLHKDD 416

Query: 215 IQGVQALYG 223
           + G++ LYG
Sbjct: 417 VNGIRHLYG 425

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Length = 425

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 51  DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD 110
            +  F G  +W  H    ++Y     N    L    I   F RAF+ W++V P++F    
Sbjct: 87  RFQTFEGDLKWHHH---NITYWIQ--NYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVY 141

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
             D ADI I F   +HGDG PFDG  G+LAH+F P     G  H D  E W++  G    
Sbjct: 142 SRD-ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVP 200

Query: 168 PVAVDLESVAVHEIGHLLGLTHS 190
               + +  A H      G ++S
Sbjct: 201 TRFGNADGAACHFPFIFEGRSYS 223

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631

 Score = 86.5 bits (213), Expect = 2e-19
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 9/175 (5%)

Query: 92  KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP------ 145
           +    +W         +   Y F         G + +G P       L + +        
Sbjct: 281 RTDGYRWCGTTEDYDRDKK-YGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGR 339

Query: 146 ESGKFHLDAAETWAVDF-GSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR 204
             GK        +  D            L  VA H  GH +GL HS    A+M P     
Sbjct: 340 SDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHAFGHAMGLEHSQDPGALMAPI-YTY 398

Query: 205 DKKVDLALDDIQGVQALYGSNPNFTIGSLVESDISTNLAVDLRIKSSMWATMMLH 259
            K   L+ DDI+G+Q LYG++P+  +G+     +        +          + 
Sbjct: 399 TKNFRLSQDDIKGIQELYGASPDIDLGTGPTPTLGPVTPEICKQDIVFDGIAQIR 453

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631

 Score = 76.9 bits (188), Expect = 4e-16
 Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 50  KDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIET 109
            +Y  FP KP+W ++        ++       L    +   F RAF  W+ V P+ F   
Sbjct: 79  ANYNFFPRKPKWDKNQITYRIIGYT-----PDLDPETVDDAFARAFQVWSDVTPLRFSRI 133

Query: 110 DDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEK 166
            D + ADI I F   +HGDG PFDG  G+LAH+F+P     G  H D  E W +  G   
Sbjct: 134 HDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVV 192

Query: 167 SPVAVDLESVAVHEIGHLLGLTHS 190
                + +           G  ++
Sbjct: 193 RVKYGNADGEYCKFPFLFNGKEYN 216

>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P Length = 479

 Score = 69.2 bits (168), Expect = 1e-13
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 66  PMTLSYAFSKENMINYLHITDI-------KAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
              L++ F +         T             K +   W+ V  ++F E      A+I 
Sbjct: 73  SANLTFKFLQSVSSIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANIT 132

Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAV 178
            G Y  D      +    G  A+++ P + +    +   +               +    
Sbjct: 133 FGNYTRDASGNLDY----GTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQ-TFT 187

Query: 179 HEIGHLLGLTHS 190
           HEIGH LGL H 
Sbjct: 188 HEIGHALGLAHP 199

>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A Length = 471

 Score = 64.2 bits (155), Expect = 6e-12
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 18/138 (13%)

Query: 66  PMTLSYAF--SKENMINYLHITDI-------KAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           P+ L+++F   K +  N    T +       +   K +   WA V  ++F E      A+
Sbjct: 55  PVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKAN 114

Query: 117 IRIGFYNGDHGDGEPFD----GVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVD 172
           I  G Y+ D      +       L           G+   +  ++      +E       
Sbjct: 115 ITFGNYSQDRPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATED-----Y 169

Query: 173 LESVAVHEIGHLLGLTHS 190
                 HEIGH LGL+H 
Sbjct: 170 GRQTFTHEIGHALGLSHP 187

>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Length = 463

 Score = 58.7 bits (141), Expect = 3e-10
 Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 17/134 (12%)

Query: 66  PMTLSYAFSKENMINYLHI---------TDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
            + L+Y F     + Y               K   K +   WA V  V+F E       D
Sbjct: 55  VINLTYTFLTAPPVGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDD 114

Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESV 176
             + F N        F    G  A ++ P S +              ++           
Sbjct: 115 GHMTFAN--------FSASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQT 166

Query: 177 AVHEIGHLLGLTHS 190
             HEIGH LGL+H 
Sbjct: 167 LTHEIGHTLGLSHP 180

>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A Length = 479

 Score = 54.6 bits (130), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 88  KAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES 147
           +A  K +   W+ V  + F++    D  D+  G ++   G           L        
Sbjct: 102 QAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAA-----FAFLPDVPDALK 156

Query: 148 GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS 190
           G+       +++ +                 HEIGH LGL+H 
Sbjct: 157 GQSWYLINSSYSANVNPANGNYGRQ---TLTHEIGHTLGLSHP 196

>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis} Length = 397

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 144 SPESGKFHLDA--AETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTL 201
           +   G   L++    T +    S  S   +    V  HE+GH+LG  H+   + +MY   
Sbjct: 311 NNILGISWLNSYNVNTASDFKASGMSTTQLMYPGVMAHELGHILGANHADDPKDLMYSKY 370

Query: 202 KPRDKKVDLALDDIQGVQALYGSNP 226
                   L+  ++  +    G   
Sbjct: 371 TGYLF--HLSEKNMDIIAKNLGWEI 393

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
1eak_A	421	72 kDa type IV collagenase; hydrolase-hydrolase in	100.0
1l6j_A	425	Matrix metalloproteinase-9; twisted beta sheet fla	100.0
1slm_A	255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	100.0
830c_A	168	MMP-13, MMP-13; matrix metalloprotease; HET: RS1;	100.0
3ma2_D	181	Matrix metalloproteinase-14; protein - protein com	100.0
1ck7_A	631	Protein (gelatinase A); hydrolase (metalloprotease	100.0
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	100.0
2y6d_A	174	Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie	100.0
2ovx_A	159	Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9)	100.0
2xs4_A	167	Karilysin protease; hydrolase, bacterial MMP, viru	100.0
3ayu_A	167	72 kDa type IV collagenase; protease, hydrolase-hy	100.0
1hy7_A	173	Stromelysin-1, MMP-3; mixed alpha beta structure,	100.0
1cge_A	168	Fibroblast collagenase; hydrolase (metalloprotease	100.0
1i76_A	163	MMP-8;, neutrophil collagenase; hydrolase, complex	100.0
1hv5_A	165	Stromelysin 3; inhibition, phosphinic inhibitor, h	100.0
1y93_A	159	Macrophage metalloelastase; matrix metalloproteina	100.0
1rm8_A	169	MMP-16, matrix metalloproteinase-16, MT3-MMP; memb	100.0
2jsd_A	160	Matrix metalloproteinase-20; MMP-NNGH, structural	100.0
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	100.0
1k7i_A	479	PROC, secreted protease C; metalloprotease, hydrol	100.0
1kap_P	479	Alkaline protease; calcium binding protein, zinc m	100.0
1sat_A	471	Serratia protease; parallel beta helix, parallel b	100.0
1g9k_A	463	Serralysin; beta jelly roll, hydrolase; 1.96A {Pse	100.0
1c7k_A	132	NCNP, zinc endoprotease; alpha and beta protein, m	99.92
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	99.71
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	99.65
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	99.61
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.34
3p24_A	397	BFT-3; metzincins, metalloendopeptidase, hydrolase	99.13
2x7m_A	195	Archaemetzincin; metalloprotease, protease, hydrol	97.43
4axq_A	163	Archaemetzincin; metalloprotease, protease, hydrol	97.41
2cki_A	262	Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.	97.38
3lmc_A	210	Peptidase, zinc-dependent; structural genomics, PS	97.37
3b8z_A	217	Protein adamts-5; alpha/beta, hydrolase; HET: 294;	97.18
1qua_A	197	Acutolysin-C, hemorrhagin III; metalloprotease, he	97.16
1yp1_A	202	FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}	97.13
1kuf_A	203	Atrolysin E, metalloproteinase; alpha/beta protein	97.12
1bud_A	197	Protein (acutolysin A); metalloproteinase, snake v	96.99
2w15_A	202	Zinc metalloproteinase BAP1; hydrolase inhibitor c	96.95
1r55_A	214	ADAM 33; metalloprotease, inhibitor, asthma, hydro	96.9
2v4b_A	300	Adamts-1; zymogen, protease, hydrolase, metallopro	96.86
2rjq_A	378	Adamts-5; metalloprotease domain, aggrecanase, cle	96.81
2rjp_A	316	Adamts-4; metalloprotease domain, aggrecanase, cle	96.8
2dw0_A	419	Catrocollastatin; apoptotic toxin, SVMP, metallopr	96.76
2e3x_A	427	Coagulation factor X-activating enzyme light CHAI;	96.74
2ddf_A	257	ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi	96.73
1atl_A	202	Atrolysin C; metalloendopeptidase, hydrolase-hydro	96.68
2ero_A	427	VAP-1, vascular apoptosis-inducing protein 1; meta	96.6
2i47_A	288	ADAM 17; TACE-inhibitor complex, hydrolase; HET: I	96.47
4dd8_A	208	Disintegrin and metalloproteinase domain-containi	96.4
3k7n_A	397	K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {	96.11
3k7l_A	422	Atragin; SVMP, metalloprotease, hydrolase; HET: NA	95.79
1lml_A	478	Leishmanolysin; metalloprotease, glycoprotein; 1.8	95.52
3g5c_A	510	ADAM 22; alpha/beta fold, cross-linked domain, cel	93.92
3ujz_A	869	Metalloprotease STCE; mucin-type glycoprotein, hyd	90.22
3p1v_A	407	Metallo-endopeptidase; structural genomics, joint	87.92
3e11_A	114	Predicted zincin-like metalloprotease; DUF1025 fam	84.52

>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A

Probab=100.00  E-value=1e-53  Score=401.19  Aligned_cols=191  Identities=37%  Similarity=0.659  Sum_probs=169.6

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHH
Q 043639           10 LLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKA   89 (261)
Q Consensus        10 ~~~~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~   89 (261)
                      |=-.|+++|++|||||||+.                  +   |+++++++||.++   +|||+|.  +++++|+.+++++
T Consensus        58 LD~~T~~~M~~PRCGvpD~~------------------~---~~~~~~~~kW~k~---~LTY~i~--~~~~~l~~~~v~~  111 (421)
T 1eak_A           58 LDQNTIETMRKPRCGNPDVA------------------N---YNFFPRKPKWDKN---QITYRII--GYTPDLDPETVDD  111 (421)
T ss_dssp             CCHHHHHHHTSCBCSSCSSC------------------S---SCCSSCCCCCSSS---EEEEEEC--CCCTTSCHHHHHH
T ss_pred             cCHHHHHHhcCCCCCCCCcc------------------c---cccccCCcccccc---eEEEEEe--cCCCCCCHHHHHH
Confidence            34579999999999999983                  2   6677889999999   9999998  7889999999999


Q ss_pred             HHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC---CceeeecccccccccCCC--
Q 043639           90 VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGS--  164 (261)
Q Consensus        90 ~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~--  164 (261)
                      +|++||++|++|++|+|+||.+ ..|||+|.|.+++|||++||||+||+|||||+|+   .|++|||++|.|+++...  
T Consensus       112 ~i~~AF~~Ws~vtpLtF~ev~~-~~ADI~I~F~~g~HgD~~pFDG~gg~LAHAf~P~~g~~Gd~HFD~dE~Wt~~~~~~~  190 (421)
T 1eak_A          112 AFARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVV  190 (421)
T ss_dssp             HHHHHHHHHHTSSSCEEEECCS-SCCSEEEEEECSSCSSSCCCCSSSSBCEEECCSSSTTTTCEEEETTSCEESSSSCCC
T ss_pred             HHHHHHHHHhcccCceeEEcCC-CCCCEEEEEecCCCCCccccCCCCCccccccCCCCCCCCceeeeeccceeccCCcce
Confidence            9999999999999999999987 5999999999999999999999999999999997   699999999999986520  


Q ss_pred             --------------------------------------------------------------------------------
Q 043639          165 --------------------------------------------------------------------------------  164 (261)
Q Consensus       165 --------------------------------------------------------------------------------  164 (261)
                                                                                                      
T Consensus       191 ~~~~g~~~~~~C~fPF~~~g~~~~~Ct~~g~~~g~~WCstt~~yd~d~~~~~C~~~~~~~~~gn~~~~~C~FPF~~~~~~  270 (421)
T 1eak_A          191 RVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTS  270 (421)
T ss_dssp             BCBSGGGTTSBCCSSEEETTEEESSCBCTTCSSCCCEEESSSBTTTSCCEEECCCTTTCCCSTTTTTCCCCSSEEETTEE
T ss_pred             eeecccCCCCcccCCeEECCceeccccccCccCCCceeccccccCcCCceeecCCcceeecccCCCCCcccCceeeCCee
Confidence                                                                                            


Q ss_pred             --------------------------------C--------C--------------------------------------
Q 043639          165 --------------------------------E--------K--------------------------------------  166 (261)
Q Consensus       165 --------------------------------~--------~--------------------------------------  166 (261)
                                                      .        .                                      
T Consensus       271 y~~Ct~~g~~dg~~WC~tt~~yd~d~~~~~C~~~~~~~~~gn~~G~pC~fPF~~~~~~y~~Ct~~Gr~~g~~WCatt~~f  350 (421)
T 1eak_A          271 YDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANY  350 (421)
T ss_dssp             ESSCBCTTCSSCCCEEESSSCTTTSCCEEECCCCCCSCBSTTTTTCCCCSSEEETTEEESSCBCTTCSSSCCEEESSSCH
T ss_pred             eccccccCcccCceeeecccccCccccccccCcccceeeccCCCCCceeeeEEEcceEEEeccccCCcCCceeeeecccc
Confidence                                            0        0                                      


Q ss_pred             ---------CCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 043639          167 ---------SPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNF  228 (261)
Q Consensus       167 ---------~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~~~~~  228 (261)
                               ...+.+|+.|++|||||+|||+|+.++++||+|+|+.. ..+.|+++||++||+|||++..+
T Consensus       351 D~DekWg~Cp~~g~~l~~va~HE~GHaLGL~Hs~~~~avM~p~Y~~~-~~~~l~~dDi~gIq~LYG~~~~~  420 (421)
T 1eak_A          351 DDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYT-KNFRLSQDDIKGIQELYGASPDI  420 (421)
T ss_dssp             HHHCCEEECCCCCEEHHHHHHHHHHHHTTCCCCSCTTSTTCSBCCCC-SSCCCCHHHHHHHHHHHCCCCCC
T ss_pred             ccccceEeeccccccchhhhhhhhhhccCCCCCCCCCCccccccccC-CCCCCCHHHHHHHHHHhCCCCCC
Confidence                     00245888999999999999999999999999999854 67899999999999999987654

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2

Probab=100.00  E-value=3.4e-52  Score=391.64  Aligned_cols=126  Identities=34%  Similarity=0.614  Sum_probs=116.5

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHH
Q 043639           10 LLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKA   89 (261)
Q Consensus        10 ~~~~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~   89 (261)
                      |=-.|+++|++|||||||+.                  +   |+++++++||.++   +|||+|.  +++++|+.+++++
T Consensus        67 LD~~T~~~M~~PRCGvpD~~------------------~---~~~~~~~~kW~k~---~LTY~i~--~~t~~l~~~~v~~  120 (425)
T 1l6j_A           67 LDSATLKAMRTPRCGVPDLG------------------R---FQTFEGDLKWHHH---NITYWIQ--NYSEDLPRAVIDD  120 (425)
T ss_dssp             CCHHHHHHHTSCBCSSCSSS------------------C---SSCCSSCSSCCSS---EEEEEEC--CCCTTSCHHHHHH
T ss_pred             cCHHHHHHhcCCCCCCcccc------------------c---cccccCCcccccc---eeEEEEe--cCCCCCCHHHHHH
Confidence            34579999999999999983                  2   6677889999999   9999998  7889999999999


Q ss_pred             HHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC---CceeeecccccccccC
Q 043639           90 VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDF  162 (261)
Q Consensus        90 ~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~  162 (261)
                      +|++||++|++|++|+|+||.+ ..|||+|.|.+++|||++||||+||+|||||+|+   .|++|||++|.|+++.
T Consensus       121 ~i~~Af~~Ws~vt~L~F~ev~~-~~ADI~I~F~~g~HgD~~pFDG~gg~LAHAf~P~~g~~Gd~HFD~dE~Wt~~~  195 (425)
T 1l6j_A          121 AFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGK  195 (425)
T ss_dssp             HHHHHHHHHHHTSSCEEEEECS-TTSSEEEEEECSSCSSSCCCCSTTSBCEEECCSSSTTTTCEEEETTSCEESSS
T ss_pred             HHHHHHHHHhhcccceEEEccC-CCCCEEEEEeeccCCCcccccCCCcccccccCCCCCCCCceeeeeccccccCC
Confidence            9999999999999999999987 5999999999999999999999999999999997   5899999999999875

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11

Probab=100.00  E-value=1e-51  Score=367.69  Aligned_cols=183  Identities=37%  Similarity=0.645  Sum_probs=165.6

Q ss_pred             HHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHH
Q 043639           11 LIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV   90 (261)
Q Consensus        11 ~~~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~   90 (261)
                      =-.|+++|++|||||||+.                  +   |.+++++.||++.   +|||+|.  +++++++.++++++
T Consensus        63 d~~t~~~m~~pRCgv~d~~------------------~---~~~~~~~~kW~~~---~ltY~i~--~~~~~l~~~~~~~~  116 (255)
T 1slm_A           63 DSDTLEVMRKPRCGVPDVG------------------H---FRTFPGIPKWRKT---HLTYRIV--NYTPDLPKDAVDSA  116 (255)
T ss_dssp             CHHHHHHTTSCBCSSCSSS------------------C---CSSCCCCSSCSCS---EEEEEEC--CCCTTSCHHHHHHH
T ss_pred             CHHHHHHhcCCCCCccccc------------------c---eeeccCCCcCCCC---ccceEec--cCCCCCCHHHHHHH
Confidence            3478999999999999983                  2   5577889999999   9999998  56778888899999


Q ss_pred             HHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCC---ceeeecccccccccCCCCCC
Q 043639           91 FKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKS  167 (261)
Q Consensus        91 i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~  167 (261)
                      |++||+.|+++++|+|+|+.+ +.|||+|.|..+.|||+++|||++|++||||+|+.   |++|||.++.|+++.     
T Consensus       117 i~~A~~~W~~vt~l~F~e~~~-~~adI~I~f~~~~hgd~~~fdG~~g~lahA~~P~~~~~G~ihfd~~e~w~~~~-----  190 (255)
T 1slm_A          117 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDT-----  190 (255)
T ss_dssp             HHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSCCCCSSSSBCEEECCSSSTTTTCEEEETTSCEESSS-----
T ss_pred             HHHHHHHHHhcCCeeEEEecC-CCcceeeeeeccCCCCccceeCCCCeeeeeecCCCCcCceEEeCCCCccccCC-----
Confidence            999999999999999999976 68999999999999999999999999999999975   899999999998753     


Q ss_pred             CccccchhhhhhhhhhhcCCCCCCCCCCccccccCC--CCCCCCCCHHHHHHHHHHhCCCC
Q 043639          168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP--RDKKVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       168 ~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~--~~~~~~l~~dDI~~iq~LYG~~~  226 (261)
                       .+.+++.|++|||||+|||.|++++++||||+|.+  ....+.|+++||++||+|||++|
T Consensus       191 -~g~~l~~va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~~~l~~dDi~~iq~LYG~~~  250 (255)
T 1slm_A          191 -TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP  250 (255)
T ss_dssp             -SSEEHHHHHHHHHHHHTTCCCCSCTTSTTSSBCCCCSCGGGCCCCHHHHHHHHHHHCCCC
T ss_pred             -ceeeehhhhHHHHHHHhcCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence             37889999999999999999999999999999985  24578999999999999999884

>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...

Probab=100.00  E-value=5.5e-50  Score=336.05  Aligned_cols=163  Identities=39%  Similarity=0.705  Sum_probs=149.7

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |++|++++||+++   +|||+|.  +++++++.++++++|++||+.|+++++|+|+|+.+ +.|||+|.|.+++|||++|
T Consensus         1 ~~~~~~~~kW~k~---~LTY~I~--n~t~~l~~~~v~~ai~~A~~~Ws~vt~L~F~ev~~-~~AdI~I~F~~~~hgd~~~   74 (168)
T 830c_A            1 YNVFPRTLKWSKM---NLTYRIV--NYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYP   74 (168)
T ss_dssp             CEECCSBCCCSSS---EEEEEEC--SCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEEESS-SCCSEEEEEECSSCSSSCC
T ss_pred             CcccCCCCcCCCC---EEEEEEe--cCCCCCCHHHHHHHHHHHHHHHHhccCcceeeccC-cccccceeecccccCCccc
Confidence            6788999999999   9999998  78889999999999999999999999999999987 7899999999999999999


Q ss_pred             ccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCC
Q 043639          132 FDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKK  207 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~  207 (261)
                      |||+||++||||+|+.   |++|||.+|.|+.+.      .+.+++.|++|||||+|||.|+.++++||||+|.+. ...
T Consensus        75 fdg~gg~lAhAf~P~~~~~G~~hfd~~e~w~~~~------~g~~l~~v~~hE~Gh~lGl~h~~~~~aiM~p~~~~~~~~~  148 (168)
T 830c_A           75 FDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSS------KGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSH  148 (168)
T ss_dssp             CCSSSSCCEEECCSSSTTTTCEEEETTSCEESSS------SSEEHHHHHHHHHHHHTTBCCCSCTTSTTSSSCCCC----
T ss_pred             ccCCCceeeeccCCCCCCCCceEecccccccccc------CCcchhhhhhhhhcchhcCCCCCCCcceeccccccCCCCC
Confidence            9999999999999984   899999999998642      378999999999999999999999999999999864 357


Q ss_pred             CCCCHHHHHHHHHHhCCCC
Q 043639          208 VDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       208 ~~l~~dDI~~iq~LYG~~~  226 (261)
                      +.|++|||++||+|||+++
T Consensus       149 ~~l~~dDi~~i~~lYg~~~  167 (168)
T 830c_A          149 FMLPDDDVQGIQSLYGPGD  167 (168)
T ss_dssp             CCCCHHHHHHHHHHHCCCC
T ss_pred             CCCCHHHHHHHHHHcCCCC
Confidence            8999999999999999875

>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M

Probab=100.00  E-value=1e-49  Score=338.05  Aligned_cols=164  Identities=37%  Similarity=0.586  Sum_probs=146.3

Q ss_pred             CCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCC-------CCcceEEEeeecCCCCC
Q 043639           57 GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY-------DFADIRIGFYNGDHGDG  129 (261)
Q Consensus        57 ~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~-------~~aDI~I~f~~~~hgd~  129 (261)
                      .+.||.++   +|||+|.  +++++++..+++++|++||+.|++|++|+|+||...       ..|||+|.|.+++|||+
T Consensus         4 ~g~kW~k~---~LTY~i~--n~t~~l~~~~v~~ai~~Af~~Ws~vt~L~F~ev~~~~~~~~~~~~ADI~I~F~~~~hgd~   78 (181)
T 3ma2_D            4 QGLKWQHN---EITFCIQ--NYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDS   78 (181)
T ss_dssp             CCCCCSSS---EEEEEEC--CCCTTTCHHHHHHHHHHHHHHHHHHSSCEEEECCHHHHHTTSSCCCSEEEEEECSCCSSS
T ss_pred             CCCCCCCC---EEEEEEc--cCCCCCCHHHHHHHHHHHHHHHHhcCCcceEEcccccccccccccCcEEEEeecccCCCC
Confidence            47899999   9999998  789999999999999999999999999999999742       58999999999999999


Q ss_pred             CCccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-
Q 043639          130 EPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-  205 (261)
Q Consensus       130 ~~fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-  205 (261)
                      +||||+||+|||||+|+.   |++|||++|.|+++...   ..+.+++.|++|||||+|||.|+.++++||||+|.+.. 
T Consensus        79 ~~FDG~gg~lAhAf~P~~~~~Gd~hfd~~e~wt~~~~~---~~g~~l~~v~~hE~Gh~lGl~hs~~~~avM~p~~~~~~~  155 (181)
T 3ma2_D           79 TPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNED---LNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDT  155 (181)
T ss_dssp             SCCCSSSSEEEEECCSCSTTTTCEEEETTSCEECTTSC---TTSEEHHHHHHHHHHHHTTCCCCSCTTSTTSSBCCCCCC
T ss_pred             CcccCCCCeeeeccCCCCCCCCceEecCccccccCCCc---cccceeeeeehhhccccccCCcCCCCcceeccccccCcC
Confidence            999999999999999986   89999999999976431   24789999999999999999999999999999998643 


Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCC
Q 043639          206 KKVDLALDDIQGVQALYGSNPNF  228 (261)
Q Consensus       206 ~~~~l~~dDI~~iq~LYG~~~~~  228 (261)
                      .++.|++|||++||+|||++...
T Consensus       156 ~~~~l~~dDi~~i~~lYg~~~~~  178 (181)
T 3ma2_D          156 ENFVLPDDDRRGIQQLYGGESGF  178 (181)
T ss_dssp             TTCCCCHHHHHHHHHHHCC----
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999987543

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A

Probab=100.00  E-value=1.9e-49  Score=390.09  Aligned_cols=126  Identities=36%  Similarity=0.665  Sum_probs=116.1

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHH
Q 043639           10 LLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKA   89 (261)
Q Consensus        10 ~~~~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~   89 (261)
                      |=-.|+++|++|||||||+.                  +   |+++++++||.++   +|||+|.  +++++++.+++++
T Consensus        60 lD~~T~~~m~~PRCGvpD~~------------------~---~~~~~~~~kW~k~---~LTy~i~--~~~~~l~~~~v~~  113 (631)
T 1ck7_A           60 LDQNTIETMRKPRCGNPDVA------------------N---YNFFPRKPKWDKN---QITYRII--GYTPDLDPETVDD  113 (631)
T ss_dssp             CCHHHHHHTTSCBCSSCSSC------------------S---CSSSCSSCSCSCS---EEEEEEC--CCCTTSCHHHHHH
T ss_pred             cCHHHHHHhcCCCCCCCCcc------------------c---cccccCCcccccc---cceEEEe--cCCCCcCHHHHHH
Confidence            34579999999999999983                  2   6677888999999   9999998  7889999999999


Q ss_pred             HHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC---CceeeecccccccccC
Q 043639           90 VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDF  162 (261)
Q Consensus        90 ~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~  162 (261)
                      +|++||++|++|++|+|+||.+ ..|||+|.|.+++|||++||||+||+|||||+|+   .|++|||++|.|+++.
T Consensus       114 ~~~~Af~~Ws~vt~L~F~ev~~-~~ADI~I~F~~~~Hgd~~pFDG~gg~LAHAf~P~~g~~Gd~HfD~dE~Wt~~~  188 (631)
T 1ck7_A          114 AFARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGE  188 (631)
T ss_dssp             HHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSSCSSSCCCCSSSSBCEEECCSSSTTTTCEEEETTSCEESSS
T ss_pred             HHHHHHHHHhhccceeEEEccC-CCCCEEEEEecCCCCCcccccCCCccccccccCCcccCCccccccccccccCC
Confidence            9999999999999999999987 5999999999999999999999999999999997   5999999999999864

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=100.00  E-value=1.4e-46  Score=358.76  Aligned_cols=185  Identities=39%  Similarity=0.699  Sum_probs=161.3

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHH
Q 043639           10 LLIFIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKA   89 (261)
Q Consensus        10 ~~~~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~   89 (261)
                      |=-.|+++|++|||||||+.                  +   |.+++++.||++.   +|||+|.  +++++++.+++++
T Consensus        60 ld~~t~~~m~~prCg~~d~~------------------~---~~~~~~~~~W~~~---~ltY~i~--~~~~~l~~~~~~~  113 (450)
T 1su3_A           60 PDAETLKVMKQPRCGVPDVA------------------Q---FVLTEGNPRWEQT---HLTYRIE--NYTPDLPRADVDH  113 (450)
T ss_dssp             CCHHHHHHHTSCBCSSCSCC-----------------------------CCCSSS---EEEEEEC--CCCTTSCHHHHHH
T ss_pred             cCHHHHHHhcCCCCCCCCcc------------------c---eeeccCCCcCCCC---cceEEec--CCCCCCCHHHHHH
Confidence            34579999999999999983                  2   6777888999999   9999998  5677888889999


Q ss_pred             HHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCC---ceeeecccccccccCCCCC
Q 043639           90 VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEK  166 (261)
Q Consensus        90 ~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~  166 (261)
                      +|++||+.|+++++|+|+|+.+ +.|||+|.|..++|||+++|||++|++||||+|+.   |++|||.+|.|+++.    
T Consensus       114 ~i~~A~~~W~~vt~l~F~ev~~-~~adI~I~f~~~~hgd~~~fdG~~g~lahA~~P~~~~~g~~hfd~~e~w~~~~----  188 (450)
T 1su3_A          114 AIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF----  188 (450)
T ss_dssp             HHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSCCCCSSSSBCEEECCSSSTTTTCEEEETTSCCBSSS----
T ss_pred             HHHHHHHHHhccCceeEEEecC-CCCCEEEEEeccCCCCccceecCCCeeeeeecCCCCcCcceEeccccccccCc----
Confidence            9999999999999999999976 78999999999999999999999999999999976   899999999998753    


Q ss_pred             CCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 043639          167 SPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNF  228 (261)
Q Consensus       167 ~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~~~~~  228 (261)
                        .+.+++.|++|||||+|||.|+++++|||||+|.... .+.|+++||++||+|||++++.
T Consensus       189 --~g~~l~~v~~HE~GH~lGl~H~~~~~svM~p~y~~~~-~~~l~~~Di~~i~~lYg~~~~~  247 (450)
T 1su3_A          189 --REYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSG-DVQLAQDDIDGIQAIYGRSQNP  247 (450)
T ss_dssp             --SSCBHHHHHHHHHHHHTTCCCCSCTTSTTSSBCCCCS-SCCCCHHHHHHHHHHHCCCSCS
T ss_pred             --ceeehhchhhhHHHHhccCCCCCCCcceeccccccCC-cCCCCHHHHHHHHHHhCCCCCC
Confidence              3778999999999999999999999999999998644 7799999999999999987654

>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*

Probab=100.00  E-value=2.1e-46  Score=316.03  Aligned_cols=169  Identities=38%  Similarity=0.693  Sum_probs=144.8

Q ss_pred             ceeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCC
Q 043639           51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE  130 (261)
Q Consensus        51 ry~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~  130 (261)
                      ||++|+++.||++.   +|||+|.  +++++++.+++++++++||+.|+++++|+|+|+.+ +.|||+|.|..+.|||++
T Consensus         1 ~~~~~~~~~~W~~~---~ltY~i~--~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~-~~adI~I~f~~~~hgd~~   74 (174)
T 2y6d_A            1 GYSLFPNSPKWTSK---VVTYRIV--SYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVW-GTADIMIGFARGAHGDSY   74 (174)
T ss_dssp             CCCBCTTCCCCCSS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECCS-SCCSEEEEEECSCCSSSC
T ss_pred             CceeCCCCCccCCC---EEEEEEe--CCCCCCCHHHHHHHHHHHHHHHHhccCeeEEEecC-CCccEEEEEeecCCCCcc
Confidence            38999999999999   9999997  67888888899999999999999999999999975 789999999999999999


Q ss_pred             CccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-C
Q 043639          131 PFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-K  206 (261)
Q Consensus       131 ~fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-~  206 (261)
                      +|||++|++||||+|+.   |++|||.+|.|+++..     .+.+++.|++|||||+|||.|++++++||||.|.... .
T Consensus        75 ~fdG~~g~la~a~~P~~~~~g~i~fd~~e~w~~~~~-----~g~~~~~~~~HE~gH~lGl~h~~~~~svM~~~~~~~~~~  149 (174)
T 2y6d_A           75 PFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSS-----LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQ  149 (174)
T ss_dssp             CCCSSSSCCEEECCSSSTTTTCEEEETTSCEESSSS-----SSEEHHHHHHHHHHHHHTBCCCSCTTSTTSSCC------
T ss_pred             ceeCCCCeeEEeecCCCCccceEEeccccccccCCC-----CCceeeehhhHHhHhhhcCCCCCCCCcEecccccCCCcc
Confidence            99999999999999986   8999999999987532     3788999999999999999999999999999988532 3


Q ss_pred             CCCCCHHHHHHHHHHhCCCCCCCC
Q 043639          207 KVDLALDDIQGVQALYGSNPNFTI  230 (261)
Q Consensus       207 ~~~l~~dDI~~iq~LYG~~~~~~~  230 (261)
                      .+.|+.+||++||+|||+++++|+
T Consensus       150 ~~~l~~~Di~~i~~lYg~~~~~r~  173 (174)
T 2y6d_A          150 NFKLSQDDIKGIQKLYGKRSNSRK  173 (174)
T ss_dssp             -CCCCHHHHHHHHHHC--------
T ss_pred             CCCCCHHHHHHHHHHhCcCCCCCC
Confidence            678999999999999999988875

>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*

Probab=100.00  E-value=7e-46  Score=308.43  Aligned_cols=156  Identities=41%  Similarity=0.723  Sum_probs=143.6

Q ss_pred             CCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccC
Q 043639           55 FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDG  134 (261)
Q Consensus        55 ~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG  134 (261)
                      |+++.||+++   +|||+|.  +++++++.+++++++++||+.|+++++|+|+|+.+ ..|||+|.|..++|||+++|||
T Consensus         1 ~~~~~~W~~~---~lty~i~--~~~~~l~~~~~~~~i~~A~~~W~~~~~l~F~e~~~-~~adI~I~f~~~~~gd~~~fdG   74 (159)
T 2ovx_A            1 FEGDLKWHHH---NITYWIQ--NYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDG   74 (159)
T ss_dssp             CCCSCCCSCS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSS-TTSSEEEEEECSSCSSSCCCCS
T ss_pred             CCCCCccCCc---eEEEEEe--CCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEecC-CCCceEEEEeeccCCCCccccC
Confidence            4778999999   9999998  57788888899999999999999999999999987 4899999999999999999999


Q ss_pred             CCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCC
Q 043639          135 VLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLA  211 (261)
Q Consensus       135 ~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~  211 (261)
                      ++|++||||+|+   .|++|||.+|.|+++..     .+.+++.|++|||||+|||.|++++++||+|+|.+. ..+.|+
T Consensus        75 ~~g~la~a~~P~~~~~g~~~fd~~e~w~~~~~-----~g~~~~~va~HEiGHaLGL~Hs~~~~~~m~~~~~~~-~~~~l~  148 (159)
T 2ovx_A           75 KDGLLAHAFPPGPGIQGDAHFDDDELWSLGKG-----QGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFT-EGPPLH  148 (159)
T ss_dssp             SSSCCEEECCSSSTTTTCEEEETTSCEECSSS-----SSEEHHHHHHHHHHHHTTCCCCSCTTSTTSSSCCCC-CSCSCC
T ss_pred             CCCeEEEEEcCCCCccceEEEccccceecCCC-----cccchhhhhhhhhhhhhcCCCCCCCcceeeccccCC-CCCCCC
Confidence            999999999997   58999999999987642     378899999999999999999999999999999853 567999


Q ss_pred             HHHHHHHHHHh
Q 043639          212 LDDIQGVQALY  222 (261)
Q Consensus       212 ~dDI~~iq~LY  222 (261)
                      ++||++||+||
T Consensus       149 ~~Di~~iq~LY  159 (159)
T 2ovx_A          149 KDDVNGIRHLY  159 (159)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999999

>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A

Probab=100.00  E-value=1e-45  Score=309.39  Aligned_cols=157  Identities=40%  Similarity=0.698  Sum_probs=143.9

Q ss_pred             CCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCC
Q 043639           57 GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVL  136 (261)
Q Consensus        57 ~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~g  136 (261)
                      .+.||+++   +|||+|.  +++++++.+++++++++||+.|+++++|+|+|+.+...|||+|.|..+.|||+++|||++
T Consensus         4 ~~~~W~~~---~lty~i~--~~~~~l~~~~~~~~i~~A~~~W~~~~~l~F~~v~~~~~adI~I~f~~~~~gd~~~~dG~~   78 (167)
T 2xs4_A            4 QGSKWNKT---TLKYYIY--NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT   78 (167)
T ss_dssp             CSCCCSSS---EEEEEEC--CCCCSSCHHHHHHHHHHHHHHHHHTSSCEEEECSCGGGCSEEEEEECSCCSSSCCTTSSS
T ss_pred             cCCcCCCC---eEEEEEe--CCCCCCCHHHHHHHHHHHHHHHhccCCceEEEeCCCCCCcEEEEEeccCCCCCcceecCC
Confidence            57899999   9999997  677888888999999999999999999999999765789999999999999999999999


Q ss_pred             CceeeecCCC------CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCC
Q 043639          137 GVLAHSFSPE------SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDL  210 (261)
Q Consensus       137 g~lAhA~~P~------~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l  210 (261)
                      |++||||+|+      .|++|||.+|.|+++.      .+.+++.|++|||||+|||.|++++++||||+|.+..  ..|
T Consensus        79 g~la~a~~P~~~~~~~~g~~~fd~~e~w~~~~------~g~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~~--~~l  150 (167)
T 2xs4_A           79 GILAHAFYPPPAGGNYAGHLHFDDDENWSING------SGIDLITVAAHEIGHLLGIEHSNVSSALMYPYYTGIK--RQL  150 (167)
T ss_dssp             CCSEEECCSTTTTGGGTTEEEEETTSCEESSS------SSEEHHHHHHHHHHHHHTBCCCSCTTSTTSSSCCSCC--CSC
T ss_pred             CeEEEEECCCCccCcccceEEECCccccccCC------CccchhhhHHHHHHHhhcCCCCCCCCceeccccCCCC--CCC
Confidence            9999999995      4999999999998753      3778999999999999999999999999999998643  389


Q ss_pred             CHHHHHHHHHHhCCCC
Q 043639          211 ALDDIQGVQALYGSNP  226 (261)
Q Consensus       211 ~~dDI~~iq~LYG~~~  226 (261)
                      +.+||++||+|||++.
T Consensus       151 ~~~Di~~iq~lYg~~~  166 (167)
T 2xs4_A          151 DNDDCLAVWDLYGYPF  166 (167)
T ss_dssp             CHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            9999999999999875

>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*

Probab=100.00  E-value=2e-45  Score=308.05  Aligned_cols=163  Identities=41%  Similarity=0.749  Sum_probs=149.4

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |++++++.||++.   +|||+|.  +++++++.++++++|++||+.|+++++|+|+|+.+ ..|||+|.|..++|||+++
T Consensus         1 ~~~~~~~~~W~~~---~lty~i~--~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~-~~adI~I~f~~~~~gd~~~   74 (167)
T 3ayu_A            1 YNFFPRKPKWDKN---QITYRII--GYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDGYP   74 (167)
T ss_dssp             CEECTTCCCCSSS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSS-SCCSEEEEEECSSCSSSCC
T ss_pred             CccCCCCCccCCc---eEEEEEe--CCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEecC-CCceEEEEEeccCCCCccc
Confidence            6788999999999   9999998  56778888899999999999999999999999987 4899999999999999999


Q ss_pred             ccCCCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCC
Q 043639          132 FDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV  208 (261)
Q Consensus       132 fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~  208 (261)
                      |||++|++||||+|+   .|++|||.+|.|+++..     .+.+++.|++|||||+|||.|++++++||||+|.+. .++
T Consensus        75 fdG~~g~la~a~~P~~~~~G~~~fd~~e~w~~~~~-----~g~~~~~~~~HE~gH~lGl~H~~~~~svM~p~~~~~-~~~  148 (167)
T 3ayu_A           75 FDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKG-----VGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYT-KNF  148 (167)
T ss_dssp             CCSSSSCCEEEECSSSTTTTCEEEETTSCEESSCS-----SSEEHHHHHHHHHHHHTTEECCSCTTSTTSSBCCCC-SSC
T ss_pred             ccCCCceeEEEECCCCCcCCceEEcceeeeecCCC-----cCccceeehhhhhHHhccCCCCCCCCccccccccCC-CCC
Confidence            999999999999997   58999999999987642     377899999999999999999999999999999854 567


Q ss_pred             CCCHHHHHHHHHHhCCCC
Q 043639          209 DLALDDIQGVQALYGSNP  226 (261)
Q Consensus       209 ~l~~dDI~~iq~LYG~~~  226 (261)
                      .|+.+||++||+|||+++
T Consensus       149 ~l~~~Di~~iq~lYg~~~  166 (167)
T 3ayu_A          149 RLSQDDIKGIQELYGASP  166 (167)
T ss_dssp             CCCHHHHHHHHHHHCCCC
T ss_pred             CCCHHHHHHHHHHhCcCC
Confidence            899999999999999875

>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...

Probab=100.00  E-value=4.1e-45  Score=307.60  Aligned_cols=163  Identities=40%  Similarity=0.707  Sum_probs=146.0

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |++|+++.||++.   +|||+|.  +++++++.++++++|++||+.|+++++|+|+|+.+ +.|||+|.|..+.|||+++
T Consensus         1 ~~~~~~~~~W~~~---~ltY~i~--~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~-~~adI~I~f~~~~~g~~~~   74 (173)
T 1hy7_A            1 FRTFPGIPKWRKT---HLTYRIV--NYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYP   74 (173)
T ss_dssp             CCBCTTCCCCSSS---EEEEEEC--CBCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSSCSSSCC
T ss_pred             CccCCCCCccCCc---eEEEEEe--CCCCCCCHHHHHHHHHHHHHHHHhCCCcceEEecc-cCCCeeEEEecccccccce
Confidence            5678899999999   9999998  56777887899999999999999999999999976 6899999999999999999


Q ss_pred             ccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCC--CCC
Q 043639          132 FDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP--RDK  206 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~--~~~  206 (261)
                      |||++|++||||+|+.   |++|||.++.|+++.      .+.+++.|++|||||+|||.|++++++||||+|.+  ...
T Consensus        75 ~~G~~g~la~a~~p~~~~~g~~~~d~~~~w~~~~------~g~~~~~v~~HEiGHaLGL~H~~~~~svM~p~~~~~~~~~  148 (173)
T 1hy7_A           75 FDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDT------TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLT  148 (173)
T ss_dssp             CCSSSSCCEEECCSSSTTTTCEEEETTSCEESSS------SSEEHHHHHHHHHHHHHTBCCCSCTTSTTSCC------CT
T ss_pred             eeCCCceeEEEecCCCCccceEEeccccccccCC------ccchhhhhHHHHHHHhhcCCCCCCCCccccccccccCCCC
Confidence            9999999999999975   899999999998753      37788999999999999999999999999999985  345


Q ss_pred             CCCCCHHHHHHHHHHhCCCC
Q 043639          207 KVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       207 ~~~l~~dDI~~iq~LYG~~~  226 (261)
                      ...|+++||++||+|||+++
T Consensus       149 ~~~l~~~Di~~iq~lYg~~~  168 (173)
T 1hy7_A          149 RFRLSQDDINGIQSLYGPPP  168 (173)
T ss_dssp             TCCCCHHHHHHHHHHHCSCC
T ss_pred             CCCCCHHHHHHHHHHhCcCC
Confidence            67899999999999999884

>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A

Probab=100.00  E-value=1.7e-44  Score=302.58  Aligned_cols=162  Identities=43%  Similarity=0.764  Sum_probs=144.3

Q ss_pred             eCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCcc
Q 043639           54 LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFD  133 (261)
Q Consensus        54 ~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fd  133 (261)
                      +|+++.||++.   +|||+|.  +++++++..+++++|++||+.|+++++|+|+|+.+ +.|||+|.|..++|||+++|+
T Consensus         1 ~~~~~~~W~~~---~itY~i~--~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~-~~adI~I~f~~~~~g~~~~~~   74 (168)
T 1cge_A            1 LTEGNPRWEQT---HLRYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFD   74 (168)
T ss_dssp             CCCCCCCCSSS---EEEEEEC--SCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSSCCC
T ss_pred             CCCCCCccCCC---EEEEEEe--CCCCCCCHHHHHHHHHHHHHHHhhccCceeEEecC-CCCcEEEEEeecccccccccc
Confidence            36788999999   9999998  56777888889999999999999999999999975 789999999999999999999


Q ss_pred             CCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCC
Q 043639          134 GVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDL  210 (261)
Q Consensus       134 G~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l  210 (261)
                      |++|++||||+|+.   |++|||.+|.|+...      .+.+++.|++|||||+|||.|+.++++||||+|.+.. .+.|
T Consensus        75 G~~g~la~a~~P~~~~~g~~~~d~~~~w~~~~------~g~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~~-~~~l  147 (168)
T 1cge_A           75 GPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------REYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSG-DVQL  147 (168)
T ss_dssp             SSSSCCEEECCSSSTTTTCEEEETTSCCBSSS------SSCBHHHHHHHHHHHHTTCCCCSCTTSTTCSSCCCCS-CCCC
T ss_pred             ccCCeEEEeECCCCCccceEEEccccccccCC------CCcchhhhhhhHhHhhhcCCCCCCCCceecccccCCC-CCCC
Confidence            99999999999975   899999999998532      3778999999999999999999999999999998643 6789


Q ss_pred             CHHHHHHHHHHhCCCCCC
Q 043639          211 ALDDIQGVQALYGSNPNF  228 (261)
Q Consensus       211 ~~dDI~~iq~LYG~~~~~  228 (261)
                      +++||++||+|||++.+.
T Consensus       148 ~~~Di~~i~~lYg~~~~~  165 (168)
T 1cge_A          148 AQDDIDGIQAIYGRSQNP  165 (168)
T ss_dssp             CHHHHHHHHHHHCC----
T ss_pred             CHHHHHHHHHHhCcCCCC
Confidence            999999999999988654

>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...

Probab=100.00  E-value=4.7e-44  Score=298.54  Aligned_cols=158  Identities=44%  Similarity=0.782  Sum_probs=144.5

Q ss_pred             eCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCcc
Q 043639           54 LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFD  133 (261)
Q Consensus        54 ~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fd  133 (261)
                      +|+++.||++.   +|||+|.  +++++++.++++++|++||+.|+++++|+|+|+.+ +.|||+|.|..+.|||+++||
T Consensus         2 ~~~~~~~W~~~---~ltY~i~--~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~e~~~-~~adI~I~f~~~~~g~~~~fd   75 (163)
T 1i76_A            2 LTPGNPKWERT---NLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINIAFYQRDHGDNSPFD   75 (163)
T ss_dssp             BCTTCCCCSCS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSCCCC
T ss_pred             ccCCCCccCCc---EEEEEEe--CCCCCCCHHHHHHHHHHHHHHHhcCCCcceEEecc-cccceEEEEeecCCCCccccc
Confidence            57889999999   9999998  56777888899999999999999999999999976 689999999999999999999


Q ss_pred             CCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCCCC
Q 043639          134 GVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKKVD  209 (261)
Q Consensus       134 G~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~~~  209 (261)
                      |++|++||||+|+.   |++|||.+|.|+++.      .+.+++.|++|||||+|||.|++++++||||+|.+. ...+.
T Consensus        76 G~~g~la~a~~p~~~~~g~~~~d~~~~w~~~~------~g~~~~~v~~HE~GHalGl~H~~~~~~~m~p~~~~~~~~~~~  149 (163)
T 1i76_A           76 GPNGILAHAFQPGQGIGGDAHFDAEETWTNTS------ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYS  149 (163)
T ss_dssp             SSSSCCEEECCSSSTTTTCEEEETTSCCBSSS------SSCBHHHHHHHHHHHHHTBCCCSCTTSTTSSSCCCCCCTTCC
T ss_pred             CCCCeEEEEecCCCCccceEEeCCccccccCc------ccchhhhhhHHHhhhhhcCCCCCCCCcccccccccCCCCCCC
Confidence            99999999999975   899999999998653      367889999999999999999999999999999863 35678


Q ss_pred             CCHHHHHHHHHHhC
Q 043639          210 LALDDIQGVQALYG  223 (261)
Q Consensus       210 l~~dDI~~iq~LYG  223 (261)
                      |+++||++||+|||
T Consensus       150 l~~~Di~~i~~lYG  163 (163)
T 1i76_A          150 LPQDDIDGIQAIYG  163 (163)
T ss_dssp             CCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999999998

>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11

Probab=100.00  E-value=3.7e-44  Score=299.62  Aligned_cols=160  Identities=38%  Similarity=0.650  Sum_probs=143.2

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |.++  +.||+++   +|||+|.  +++++++.+++++++++||+.|+++++|+|+|+.+ +.|||+|.|..++|||+++
T Consensus         2 y~~~--~~~W~~~---~ltY~i~--~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~e~~~-~~adI~i~f~~~~~gd~~~   73 (165)
T 1hv5_A            2 FVLS--GGRWEKT---DLTYRIL--RFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLP   73 (165)
T ss_dssp             EEEE--TTEEEEC---EEEEEEC--SCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SBCSEEEEEECSCSSSSCC
T ss_pred             cccc--CCCCCCC---eEEEEEe--CCCCCCCHHHHHHHHHHHHHHHHcccCeeEEEecC-CCccEEEEEeecccCCCCc
Confidence            5665  3599999   9999998  56778888899999999999999999999999986 5899999999999999999


Q ss_pred             ccCCCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCC
Q 043639          132 FDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV  208 (261)
Q Consensus       132 fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~  208 (261)
                      |||++|++||||+|+   .|++|||.+|.|+++..     .+.+++.|++|||||+|||.|++++.+||+|+|.+. .+.
T Consensus        74 fdg~~g~la~A~~P~~~~~g~~~~d~~~~w~~~~~-----~g~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~-~~~  147 (165)
T 1hv5_A           74 FDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDN-----QGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFR-YPL  147 (165)
T ss_dssp             CCSSSSCCEEEECCTTSSSEEEEEETTSCEESSCS-----SSEEHHHHHHHHHHHHTTCCCCSCTTSTTCSSCCCC-SSC
T ss_pred             ccCCcceEEEeeCCCCCcCccEEEccccceecCCc-----cCchhhhhHHHHhHhhhCCCCCCCCCceecccccCC-CCC
Confidence            999999999999997   58999999999987632     367899999999999999999999999999998753 357


Q ss_pred             CCCHHHHHHHHHHhCCC
Q 043639          209 DLALDDIQGVQALYGSN  225 (261)
Q Consensus       209 ~l~~dDI~~iq~LYG~~  225 (261)
                      .|+++||++||+|||++
T Consensus       148 ~l~~~Di~~iq~LYg~~  164 (165)
T 1hv5_A          148 SLSPDDRRGIQHLYGRP  164 (165)
T ss_dssp             CCCHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            89999999999999975

>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...

Probab=100.00  E-value=1.1e-43  Score=295.30  Aligned_cols=154  Identities=42%  Similarity=0.748  Sum_probs=141.4

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      +.||++.   +|||+|.  +++++++.+++++++++||+.|+++++|+|+|+.+ +.|||+|.|..++|||+++|||++|
T Consensus         2 g~kW~~~---~ltY~i~--~~~~~l~~~~~~~~i~~A~~~W~~~t~l~F~e~~~-~~adI~I~f~~~~~gd~~~fdG~~g   75 (159)
T 1y93_A            2 GPVWRKH---YITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGG   75 (159)
T ss_dssp             CCCCSSS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSCCCCSSSS
T ss_pred             CCcccCC---EEEEEEe--CCCCCCCHHHHHHHHHHHHHHHhccCCceEEEecC-CCccEEEEEEecccCCcccccCCCC
Confidence            5799999   9999998  56778888899999999999999999999999976 6899999999999999999999999


Q ss_pred             ceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-CCCCCCHH
Q 043639          138 VLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALD  213 (261)
Q Consensus       138 ~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-~~~~l~~d  213 (261)
                      ++||||+|+.   |++|||.+|.|+++.      .+.+++.|++|||||+|||.|++++++||+|+|.+.. ..+.|+++
T Consensus        76 ~la~a~~P~~~~~g~~~fd~~~~w~~~~------~g~~~~~~~~HE~GH~lGl~H~~~~~~~m~p~~~~~~~~~~~l~~~  149 (159)
T 1y93_A           76 ILAHAFGPGSGIGGDAHFDEDEFWTTHS------GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSAD  149 (159)
T ss_dssp             CCEEECCSCSTTTTCEEEETTSCEESSS------SSEEHHHHHHHHHHHHTTCCCCSCTTSTTSSSCCCCCGGGCCCCHH
T ss_pred             eEEEEecCCCCcCceEEECCccccccCc------ccchhhhhhhhhhhhhhcCCCCCCCCceeccccccCcCCCCCCCHH
Confidence            9999999975   899999999998753      2678999999999999999999999999999998642 46799999


Q ss_pred             HHHHHHHHhC
Q 043639          214 DIQGVQALYG  223 (261)
Q Consensus       214 DI~~iq~LYG  223 (261)
                      ||++||+|||
T Consensus       150 Di~~iq~lYG  159 (159)
T 1y93_A          150 DIRGIQSLYG  159 (159)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhcC
Confidence            9999999998

>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11

Probab=100.00  E-value=5e-43  Score=293.74  Aligned_cols=159  Identities=36%  Similarity=0.636  Sum_probs=143.3

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcC------CCCCcceEEEeeecCCCCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETD------DYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~------~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      +.||+++   +|||+|.  +++++++..+++++|++||+.|+++++|+|+|+.      +...|||+|.|..+.|||++|
T Consensus         1 g~kW~~~---~lTY~i~--~~~~~~~~~~~~~~i~~A~~~W~~v~~l~F~ev~~~~~~~~~~~adI~i~f~~~~~gd~~~   75 (169)
T 1rm8_A            1 GQKWQHK---HITYSIK--NVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSP   75 (169)
T ss_dssp             CCCCSSS---EEEEEEC--CCCTTTCHHHHHHHHHHHHHHHHTTSSCEEEECCTTCCCSSSCCCSEEEEEESSCCSSSCC
T ss_pred             CCCCCCC---EEEEEEE--CCCCCCCHHHHHHHHHHHHHHHHhcCCceeEEeccccccCCCCCCCEEEEEeeccccccce
Confidence            4799999   9999997  5677788889999999999999999999999997      457899999999999999999


Q ss_pred             ccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCC
Q 043639          132 FDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKK  207 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~  207 (261)
                      |||++|++||||+|+.   |++|||.+|.|+++..   ...+.++..|++|||||+|||.|+.++.+||+|+|.+. ..+
T Consensus        76 fdG~~g~la~a~~P~~g~~g~~~fd~~e~w~~~~~---~~~g~~~~~~~~he~gh~lgl~h~~~~~~~m~~~~~~~~~~~  152 (169)
T 1rm8_A           76 FDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNP---NHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDN  152 (169)
T ss_dssp             CCSSSSCCEEECCSCSTTTTCEEEETTSCEESSCC---SSSSEEHHHHHHHHHHHHHTCCCCSCTTSTTSSSCCCCCCTT
T ss_pred             ecCCCCEEEEEEeecCCccceEEEcCCCcceecCC---CCccceeeeehhhhhhhhcCCCCCCCCCCEeecccccCCCCC
Confidence            9999999999999975   6999999999987643   23478899999999999999999999999999999864 346


Q ss_pred             CCCCHHHHHHHHHHhCC
Q 043639          208 VDLALDDIQGVQALYGS  224 (261)
Q Consensus       208 ~~l~~dDI~~iq~LYG~  224 (261)
                      +.|+.+||++||+|||+
T Consensus       153 ~~l~~~Di~~iq~lYg~  169 (169)
T 1rm8_A          153 FKLPNDDLQGIQKIYGP  169 (169)
T ss_dssp             CCCCHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            79999999999999995

>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}

Probab=100.00  E-value=5e-43  Score=290.81  Aligned_cols=156  Identities=43%  Similarity=0.796  Sum_probs=141.3

Q ss_pred             CCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCC
Q 043639           57 GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVL  136 (261)
Q Consensus        57 ~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~g  136 (261)
                      ++.||+++   +|||+|.  +++++++.++++++|++||+.|+++++|+|+|+.+ +.+||+|.|..+.|+++++|+|++
T Consensus         1 ~~~~W~~~---~itY~i~--~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~-~~adi~i~f~~~~~g~~~~~~G~~   74 (160)
T 2jsd_A            1 GEPKWKKN---TLTYRIS--KYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMISFENGDHGDSYPFDGPR   74 (160)
T ss_dssp             CCSSCSCS---EEEEEEC--CCCSSSCHHHHHHHHHHHHHHHHHHSSCEEEECSS-SCCSEEEEEECSCSSSSSCCCSSS
T ss_pred             CCCcccCC---eEEEEEe--CCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEecC-CCCCEEEEEeeccCCCCccccCCC
Confidence            36799999   9999998  45677888889999999999999999999999976 689999999999999999999999


Q ss_pred             CceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCCCCCCH
Q 043639          137 GVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKKVDLAL  212 (261)
Q Consensus       137 g~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~~~l~~  212 (261)
                      |++||||+|+.   |++|||.++.|+++.      .+.+++.|++|||||+|||.|++++++||||+|.+. ...+.|++
T Consensus        75 g~~a~a~~p~~~~~g~~~~d~~~~~~~~~------~g~~~~~v~~HEiGHaLGL~H~~~~~svM~p~~~~~~~~~~~l~~  148 (160)
T 2jsd_A           75 GTLAHAFAPGEGLGGDTHFDNAEKWTMGT------NGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPK  148 (160)
T ss_dssp             SCSEEECCSSSSSTTCEEEETTSCEESSS------SSEEHHHHHHHHHHHHHTCCCCCCTTCSSCTTTCCCCTTTCCCCS
T ss_pred             CeeEEEecCCCCcCccEEeccccccccCC------cchhhHHHHHHHhHhhhcCCCCCCCCcEeccccccCCCCCCCCCH
Confidence            99999999975   899999999998753      367889999999999999999999999999999864 24678999


Q ss_pred             HHHHHHHHHhCC
Q 043639          213 DDIQGVQALYGS  224 (261)
Q Consensus       213 dDI~~iq~LYG~  224 (261)
                      +||++||+|||+
T Consensus       149 ~Di~~iq~LYg~  160 (160)
T 2jsd_A          149 DDVKGIQALYGP  160 (160)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999995

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=100.00  E-value=1e-39  Score=303.98  Aligned_cols=155  Identities=41%  Similarity=0.727  Sum_probs=142.2

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      ++||++.   +|||+|.  +++++++.+++++++++||+.|+++++|+|+|+.+ +.|||+|.|..++|||+++|||++|
T Consensus         1 g~kW~~~---~lty~i~--~~~~~~~~~~~~~~i~~A~~~W~~vt~l~F~ev~~-~~adI~I~f~~~~hgd~~~fdG~~g   74 (365)
T 3ba0_A            1 GPVWRKH---YITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGG   74 (365)
T ss_dssp             CCCCSCS---CEEEEEC--CCCTTCCSHHHHHHHHHHHHHHHTTSSCCEEECSS-SCCSEEEEEECSSCSSSSCCCSSSS
T ss_pred             CCCCcCc---EEEEEEe--CCCCCCCHHHHHHHHHHHHHHHhcccCeeEEEecC-CCCCEEEEEeccCCCCcccccCCCC
Confidence            4799999   9999998  56778888899999999999999999999999976 6899999999999999999999999


Q ss_pred             ceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCCCCCCHH
Q 043639          138 VLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKKVDLALD  213 (261)
Q Consensus       138 ~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~~~l~~d  213 (261)
                      ++||||+|+.   |++|||.+|.|+++.      .+.+++.|++|||||+|||.|++++++||||+|.+. ...+.|+++
T Consensus        75 ~laha~~P~~~~~g~~hfd~~e~w~~~~------~g~~~~~~~~HE~gH~lGl~h~~~~~svM~p~~~~~~~~~~~l~~~  148 (365)
T 3ba0_A           75 ILAHAFGPGSGIGGDAHFDEDEFWTTHS------GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSAD  148 (365)
T ss_dssp             CCEEECCSCSSSSSCEEEETTSCEESSS------SSEESSHHHHHHHHHHHTCCCCSCTTTTTSSSCCCCCSSSCCCCHH
T ss_pred             eEEEeecCCCCccceEEeCCCCCcccCC------CcccceeehhhhhhhhhcCCCCCccccceeeeeccccCccCCCCHH
Confidence            9999999975   899999999998753      378899999999999999999999999999999863 357899999


Q ss_pred             HHHHHHHHhCC
Q 043639          214 DIQGVQALYGS  224 (261)
Q Consensus       214 DI~~iq~LYG~  224 (261)
                      ||++||+|||+
T Consensus       149 Di~~iq~lYg~  159 (365)
T 3ba0_A          149 DIRGIQSLYGD  159 (365)
T ss_dssp             HHHHHHSSSCS
T ss_pred             HHHHHHHhhCC
Confidence            99999999994

>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P

Probab=100.00  E-value=1.1e-39  Score=313.06  Aligned_cols=187  Identities=21%  Similarity=0.296  Sum_probs=148.9

Q ss_pred             HHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCccc-------CCCCeeEEEEEecCCcCC-----
Q 043639           13 FIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWT-------RHVPMTLSYAFSKENMIN-----   80 (261)
Q Consensus        13 ~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~-------~~~~~~LTY~~~~~~~~~-----   80 (261)
                      +|+++|++|||||||+..                     + +++.+.||+       +.   +|||+|..  +++     
T Consensus        38 ~tl~~m~kPrCgv~d~~~---------------------~-l~~~~~kW~~~~~~~~~~---~LTY~f~~--~~~~~~~~   90 (479)
T 1k7i_A           38 DGLTVNGKTSYSIDQAAA---------------------Q-ITRENVSWNGTNVFGKSA---NLTFKFLQ--SVSSIPSG   90 (479)
T ss_dssp             TTCEETTEECCCHHHHHH---------------------H-HTTTCEETTEESCCSCCE---EEEEEECS--CCSCCTTS
T ss_pred             cchhhhcCCCCCCcchhh---------------------h-hccCCCccCCccccCCCc---eEEEEEeC--CCCccccc
Confidence            577899999999999731                     1 345678998       55   99999984  333     


Q ss_pred             -----cCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCC----ceee
Q 043639           81 -----YLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES----GKFH  151 (261)
Q Consensus        81 -----~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~----G~vh  151 (261)
                           .+++ .+++++++||+.|++|++|+|+||.+..+++|+|.+..+.|++..    +++++||||+|+.    |++|
T Consensus        91 ~~~~~~ls~-~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~adI~f~~~~~~~~g~~----~gg~lAhA~~P~~g~~~g~~~  165 (479)
T 1k7i_A           91 DTGFVKFNA-EQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNL----DYGTQAYAYYPGNYQGAGSSW  165 (479)
T ss_dssp             CBCCBCCCH-HHHHHHHHHHHHHHTTBSEEEEECCTTCCCSEEEEEECBCTTSCB----CCSCCEEECCSSSSTTTTEEE
T ss_pred             ccccccCCH-HHHHHHHHHHHHHhcccceeEEEeCCCCCeeEEEEEecCCCCCcc----cccceeEeecCCCCccccceE
Confidence                 2354 567789999999999999999999877789999998877665443    2789999999975    4899


Q ss_pred             ecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCc-cccccCC-----CCCCC-----------------
Q 043639          152 LDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAV-MYPTLKP-----RDKKV-----------------  208 (261)
Q Consensus       152 fd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~sv-M~p~y~~-----~~~~~-----------------  208 (261)
                      |+.++.|.....     .+.+++.|++|||||+|||.|+++++++ |+|+|..     ....+                 
T Consensus       166 ~~~~~~~~~~~~-----~g~~~~~va~HEiGHaLGL~Hs~~~~a~~m~P~y~~~~~~~d~~~~svMsY~~~~~~~~~~~~  240 (479)
T 1k7i_A          166 YNYNQSNIRNPG-----SEEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSIMSFWGENETGADYNG  240 (479)
T ss_dssp             EETTSHHHHCTT-----TSHHHHHHHHHHHHHHHTCCCSSSCCSSSSCCCGGGCSSTTCSTTTCTTCSSCGGGGTCBCTT
T ss_pred             ecccccccccCC-----CCcccccccHHHHHHhhcCCCCCcccccccCccccccccccCCcceeEeecccccccCccccc
Confidence            999998875432     2456689999999999999999999998 9998863     11122                 


Q ss_pred             ----CCCHHHHHHHHHHhCCCCCCCCCCCccc
Q 043639          209 ----DLALDDIQGVQALYGSNPNFTIGSLVES  236 (261)
Q Consensus       209 ----~l~~dDI~~iq~LYG~~~~~~~~~~~~~  236 (261)
                          .++.+||++||+|||+++..+.+++...
T Consensus       241 ~y~~~~~~~Di~aIQ~LYG~~~~~~~Gd~~y~  272 (479)
T 1k7i_A          241 HYGGAPMIDDIAAIQRLYGANMTTRTGDSVYG  272 (479)
T ss_dssp             CCCCSCCHHHHHHHHHHHCBCTTTTCSCCEEE
T ss_pred             cccCCCccchhhhhhheeccccccccCCccee
Confidence                2489999999999999999988887543

>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A

Probab=100.00  E-value=3.8e-39  Score=309.35  Aligned_cols=186  Identities=24%  Similarity=0.370  Sum_probs=148.2

Q ss_pred             HHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCC---CCeeEEEEEecCCcCCc--------
Q 043639           13 FIIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRH---VPMTLSYAFSKENMINY--------   81 (261)
Q Consensus        13 ~~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~---~~~~LTY~~~~~~~~~~--------   81 (261)
                      .|+++|++|||||||+.                      +.+++.+.||.+.   ++++|||+|...  ++.        
T Consensus        29 ~t~~~m~~Prcgv~d~~----------------------~~~~~~~~kW~~~~~~~~~~LTYsf~~~--~~~~~~~~~~~   84 (479)
T 1kap_P           29 GDELVNGHPSYTVDQAA----------------------EQILREQASWQKAPGDSVLTLSYSFLTK--PNDFFNTPWKY   84 (479)
T ss_dssp             SSSEETTEECCCHHHHH----------------------HHHTTTCCCCCCCTTCSSEEEEEEECSS--CCHHHHCGGGT
T ss_pred             hhhHhhCCCCCCCccHH----------------------HhhccCCCCCCCCCCCCccEEEEEEECC--CcccccCcccc
Confidence            36789999999999983                      2245567899853   356999999843  322        


Q ss_pred             ------------CCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCC--
Q 043639           82 ------------LHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES--  147 (261)
Q Consensus        82 ------------l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~--  147 (261)
                                  ++ +++++++++||+.|++|++|+|+||.+...|||+|.|.          +|++|++||||+|+.  
T Consensus        85 ~~d~~~~~~f~~ls-~~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~AdI~i~f~----------~g~~G~lA~A~~P~~g~  153 (479)
T 1kap_P           85 VSDIYSLGKFSAFS-AQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNF----------SSSVGGAAFAFLPDVPD  153 (479)
T ss_dssp             CSSCSCCCCCBCCC-HHHHHHHHHHHHHHHTTBSEEEEEEEESSCSSEEEEEE----------CSCCSSSEEECCTTSCT
T ss_pred             ccccccccccccCC-HHHHHHHHHHHHHHhcccCeeEEEcCCCCCccEEEEEe----------cCCCCccEEEECCCCCC
Confidence                        33 46899999999999999999999998766899999984          367889999999975  


Q ss_pred             ---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCcc-ccccCC-----CCCCC----------
Q 043639          148 ---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVM-YPTLKP-----RDKKV----------  208 (261)
Q Consensus       148 ---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM-~p~y~~-----~~~~~----------  208 (261)
                         |++||+.++.|+....+   ..+..++.|++|||||+|||.|+++++++| +|+|..     ....+          
T Consensus       154 ~~~g~~~~~~~~~~~~~~~~---~~g~~~~~va~HEIGHaLGL~Hs~~~~a~m~~p~y~~~~~~~d~~~~svMsY~~~~~  230 (479)
T 1kap_P          154 ALKGQSWYLINSSYSANVNP---ANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQN  230 (479)
T ss_dssp             TTTTEEEEECSSSCCTTTSC---CTTSHHHHHHHHHHHHHHTCCCSSSCCTTSSCCCGGGCSSTTCSTTTCTTCCSCGGG
T ss_pred             ccCCceEEecccccccccCC---CCCcccceeehhhhhhhhccCCCCCcccccccccccccccccCCcceeEEeeccccc
Confidence               58999999999754322   224457899999999999999999999998 888762     11122          


Q ss_pred             -----------CCCHHHHHHHHHHhCCCCCCCCCCCccc
Q 043639          209 -----------DLALDDIQGVQALYGSNPNFTIGSLVES  236 (261)
Q Consensus       209 -----------~l~~dDI~~iq~LYG~~~~~~~~~~~~~  236 (261)
                                 .++.+||++||+|||+++.++.++++..
T Consensus       231 ~~~~~~~~y~~~~~~~Di~aiq~lYG~~~~~~~Gdt~yg  269 (479)
T 1kap_P          231 TGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYG  269 (479)
T ss_dssp             GTCBCTTCCCSSCCHHHHHHHHHHHCBCTTTTCSCCEEE
T ss_pred             CCccccccccCCCCcchhhhhhcccccccccccccceee
Confidence                       2479999999999999999998887544

>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A

Probab=100.00  E-value=2.8e-39  Score=309.83  Aligned_cols=193  Identities=24%  Similarity=0.316  Sum_probs=146.1

Q ss_pred             HHHHhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccC----CCCeeEEEEEecCCcCC---------
Q 043639           14 IIFIHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTR----HVPMTLSYAFSKENMIN---------   80 (261)
Q Consensus        14 ~~~~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~----~~~~~LTY~~~~~~~~~---------   80 (261)
                      ++++|++|||||||+..                     + +++.+.||+.    .++++|||+|..  +++         
T Consensus        21 ~l~v~~kPrcgvpd~~~---------------------~-l~~~~~kW~~~~~~~~~~~LTY~f~~--~~~~~~~~~~~~   76 (471)
T 1sat_A           21 GIQINGKDSFSNEQAGL---------------------F-ITRENQTWNGYKVFGQPVKLTFSFPD--YKFSSTNVAGDT   76 (471)
T ss_dssp             TCEETTEECCCHHHHHH---------------------H-HTTTCCCTTCTTCCSCCEEEEEECCC--CCTTCCCTTSCB
T ss_pred             CccccCCcCCCCcchhH---------------------h-hccCCCcccCccccCCCceEEEEeec--CCCccccccccc
Confidence            45679999999999731                     1 4556789971    113499999984  333         


Q ss_pred             ---cCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCCCceee-ecccc
Q 043639           81 ---YLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH-LDAAE  156 (261)
Q Consensus        81 ---~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~~G~vh-fd~~e  156 (261)
                         .+++ .+++++++||+.|++|++|+|+||.+..+++|+|.+..+.|.+.  +  .++++||||+|+.|..+ |+.+|
T Consensus        77 ~~~~ls~-~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~adI~f~~~~~~~~g~--~--~gg~lahA~~P~~g~~~~~~~~e  151 (471)
T 1sat_A           77 GLSKFSA-EQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGH--Y--DYGTQAYAFLPNTIWQGQDLGGQ  151 (471)
T ss_dssp             SCBCCCH-HHHHHHHHHHHHHHHHBSEEEEECCTTSCCSEEEEEECEEETTE--E--CCSCCEEECCTTCEETTEECTTE
T ss_pred             ccccCCH-HHHHHHHHHHHHhhccCCeeEEEcCCCCceEEEEEEecCCCCCc--c--cccceeeEecCCCCcccccccce
Confidence               2334 56788999999999999999999987678899888876654332  3  26899999999988776 88899


Q ss_pred             cccccCCC--CCCCccccchhhhhhhhhhhcCCCCCCCCCCc-cccccCC-----CCCCCC-------------------
Q 043639          157 TWAVDFGS--EKSPVAVDLESVAVHEIGHLLGLTHSPVKEAV-MYPTLKP-----RDKKVD-------------------  209 (261)
Q Consensus       157 ~wt~~~~~--~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~sv-M~p~y~~-----~~~~~~-------------------  209 (261)
                      .|......  .....+.+++.|++|||||+|||.|+++++++ |+|+|..     ....+.                   
T Consensus       152 ~w~~~~~~~~~~~~~g~~~~~va~HEiGHaLGL~Hs~~~~a~~m~P~y~~~~~~~d~~~~svMsY~~~~~~g~~~~~~~~  231 (471)
T 1sat_A          152 TWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHYA  231 (471)
T ss_dssp             EEEETTSHHHHCTTTCHHHHHHHHHHHHHHHTCCCSSCCCSSSSCCCGGGCSBTTCSTTTCTTCCSCGGGGTCBCTTCCC
T ss_pred             eeeccccccccCCCcCcccceeeeeeccccccCCCCCCccccccCccccccccccCCccceeeccccccccCcccccccc
Confidence            99754220  00112455689999999999999999999999 8998852     112222                   


Q ss_pred             --CCHHHHHHHHHHhCCCCCCCCCCCcc
Q 043639          210 --LALDDIQGVQALYGSNPNFTIGSLVE  235 (261)
Q Consensus       210 --l~~dDI~~iq~LYG~~~~~~~~~~~~  235 (261)
                        ++++||++||+|||++++++.+++..
T Consensus       232 ~~~~~~Di~aiQ~LYG~~~~~~~Gd~~y  259 (471)
T 1sat_A          232 AAPLLDDIAAIQHLYGANLSTRTGDTVY  259 (471)
T ss_dssp             CSCCHHHHHHHHHHHCBCTTTTCSCCEE
T ss_pred             CCCCcchhhhhhcccccccccccccccc
Confidence              48999999999999999888888754

>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P

Probab=100.00  E-value=7.6e-38  Score=299.21  Aligned_cols=182  Identities=24%  Similarity=0.298  Sum_probs=139.1

Q ss_pred             HhcCCCCCCCCCCCcccccCCCCCChhhhhccccceeeCCCCCcccCC---CCeeEEEEEecCCcCCc------------
Q 043639           17 IHESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRH---VPMTLSYAFSKENMINY------------   81 (261)
Q Consensus        17 ~m~~PRCGvpD~~~~~~~~~~~~~~~~~~~~~~kry~~~~~~~kW~~~---~~~~LTY~~~~~~~~~~------------   81 (261)
                      +|.+|||||||+..                      .+++.+.||.+.   ++++|||+|..  +++.            
T Consensus        25 v~~kPrcgv~d~~~----------------------~l~~~~~kW~~~~~~~~~~LTY~f~~--~~~~~~~p~~~~~~~~   80 (463)
T 1g9k_A           25 VNGKPSFTVDQVAD----------------------QLTRSGASWHDLNNDGVINLTYTFLT--APPVGYASRGLGTFSQ   80 (463)
T ss_dssp             ETTEECCCHHHHHH----------------------HHTTTCCCCCCTTCSSSEEEEEEECS--SCCTTGGGGCCCSEEC
T ss_pred             ecCCCcCCCChhHH----------------------hccCCCCCCCCCcCCCCcEEEEEEec--CCcccccccccccccc
Confidence            57889999999731                      245668899831   24599999984  3333            


Q ss_pred             CCHHHHHHHHHHHHHHhHhcCCceEEE--cCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC---Cceeeecccc
Q 043639           82 LHITDIKAVFKRAFSKWASVIPVSFIE--TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAE  156 (261)
Q Consensus        82 l~~~~~~~~i~~Af~~Ws~vt~l~F~e--v~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~---~G~vhfd~~e  156 (261)
                      ++ +.+++++++||+.|++|++|+|+|  |.+...|||+|.|          |+|+++++||||+|+   .|++||+.+|
T Consensus        81 l~-~~~~~~i~~A~~~Ws~vt~L~F~e~~v~~~~~AdI~i~~----------fdg~~g~lA~A~~P~~~~~G~~~fd~~~  149 (463)
T 1g9k_A           81 FS-ALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFAN----------FSASNGGAAFAYLPNSSRKGESWYLINK  149 (463)
T ss_dssp             CC-HHHHHHHHHHHHHHHTTBSEEEEESCCCC-CCEEEEEEE----------ECCGGGCSEEECCTTSTTTTEEEEECBT
T ss_pred             CC-HHHHHHHHHHHHHHhcccCceEEEcccCCCCCccEEEEe----------ecCCCcceeeeecCCCCcCCceeecccc
Confidence            23 467899999999999999999999  8766789999987          457889999999994   5999999999


Q ss_pred             cccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCcc-ccccCC-----CC---------------CC--------
Q 043639          157 TWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVM-YPTLKP-----RD---------------KK--------  207 (261)
Q Consensus       157 ~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM-~p~y~~-----~~---------------~~--------  207 (261)
                      .|+....+   ..+..++.|++|||||+|||.|+++++++| +|.|..     ..               ..        
T Consensus       150 ~w~~~~~~---~~g~~~~~va~HEiGHaLGL~Hs~~~~a~~g~p~y~~~~~~~Ds~~~SVMsY~~~~~~~~~f~~~~~~~  226 (463)
T 1g9k_A          150 DYQVNKTP---GEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVYAEDTRAYSVMSYWSEKNTGQVFTKTGEGA  226 (463)
T ss_dssp             TBCTTTSC---CTTSHHHHHHHHHHHHHHTCCCSSCCC-----CCGGGCSSTTCSTTTCTTCSSCGGGGTCCCCCTTCCC
T ss_pred             cccccccc---CcCccchhhhhhhhhhhhccCCCCcccccccCccccccccccCCCceEeeeccccccCCCccccccccc
Confidence            99854332   224456899999999999999999998887 777641     00               01        


Q ss_pred             --CCCCHHHHHHHHHHhCCCCCCCCCCCccc
Q 043639          208 --VDLALDDIQGVQALYGSNPNFTIGSLVES  236 (261)
Q Consensus       208 --~~l~~dDI~~iq~LYG~~~~~~~~~~~~~  236 (261)
                        ..|+.+||++||+|||++..++.+++...
T Consensus       227 y~~~~~~~DI~aiQ~LYG~~~~t~~gd~~yg  257 (463)
T 1g9k_A          227 YASAPLLDDIAAVQKLYGANLETRADDTVYG  257 (463)
T ss_dssp             CCSSCCHHHHHHHHHHHCBCTTTTCSCCEEE
T ss_pred             cccCcchhhhhhhhcccccccccccCccccc
Confidence              23689999999999999999888887554

>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A

Probab=99.92  E-value=3.4e-25  Score=177.48  Aligned_cols=126  Identities=23%  Similarity=0.245  Sum_probs=101.7

Q ss_pred             eeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhH-hcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCC
Q 043639           67 MTLSYAFSKENMINYLHITDIKAVFKRAFSKWA-SVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP  145 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws-~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P  145 (261)
                      ++|+|.....        .+++++|++||+.|+ +|++|+|+|+   +.|||+|. ..+        | +++.+||+..|
T Consensus         2 ~~~~y~~s~~--------~~v~~ai~~Afq~W~s~Vt~l~F~ev---~~ADI~I~-~~~--------D-~gg~~A~~~~~   60 (132)
T 1c7k_A            2 VTVTYDPSNA--------PSFQQEIANAAQIWNSSVRNVQLRAG---GNADFSYY-EGN--------D-SRGSYAQTDGH   60 (132)
T ss_dssp             EEEEEEEEEC--------GGGHHHHHHHHHHHHHHCSSEEEEEC---SSCSEEEE-EEC--------C-TTCCEEEECSS
T ss_pred             eEEEEeCCCh--------HHHHHHHHHHHHHHHhcCCceEEEEc---CCceEEEE-eCC--------C-CCCceecCCCC
Confidence            4788888632        579999999999995 8999999999   57999995 221        2 57889998888


Q ss_pred             CCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCC-C-CCccccccCCC-CCCCCCCHHHHHHHHHHh
Q 043639          146 ESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV-K-EAVMYPTLKPR-DKKVDLALDDIQGVQALY  222 (261)
Q Consensus       146 ~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~-~-~svM~p~y~~~-~~~~~l~~dDI~~iq~LY  222 (261)
                      +.|++|||    |+..       .+.++..|++|||||+|||.|..+ + .++|.+...+. -..+.+..+||++||+||
T Consensus        61 g~G~~~~d----~t~~-------~~~~~~~v~aHE~GH~LGL~~~y~~~~~~lMs~~~~g~~~~~~~p~~~d~a~Vq~ly  129 (132)
T 1c7k_A           61 GRGYIFLD----YQQN-------QQYDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALW  129 (132)
T ss_dssp             SCEEEEEE----HHHH-------HHSCHHHHHHHHHHHHHTCCCCTTSCTTCGGGTTTTCTTCCCCSCCHHHHHHHHHHT
T ss_pred             CCCCeEec----cccc-------CCcCCceEEeeeehhccCCcccCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence            88999997    3331       267788999999999999999886 2 47998766543 235678999999999999


Q ss_pred             CC
Q 043639          223 GS  224 (261)
Q Consensus       223 G~  224 (261)
                      |.
T Consensus       130 ~~  131 (132)
T 1c7k_A          130 AN  131 (132)
T ss_dssp             TT
T ss_pred             cC
Confidence            84

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A

Probab=99.71  E-value=8.2e-17  Score=138.08  Aligned_cols=99  Identities=25%  Similarity=0.453  Sum_probs=72.3

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      +.+|++.   +|+|.|.. +++     ..++++|++||+.|+++++|+|++...   .+..|.|..+++| ++++.|..|
T Consensus         7 ~~~Wp~~---~VpY~I~~-~~s-----~~~~~~I~~A~~~w~~~TCIrFv~~t~---e~dyI~f~~~~~G-C~S~vG~~g   73 (201)
T 3edh_A            7 ERVWPDG---VIPFVIGG-NFT-----GSQRAVFRQAMRHWEKHTCVTFLERTD---EDSYIVFTYRPCG-CCSYVGRRG   73 (201)
T ss_dssp             GGSCGGG---EEEEEECS-SCC-----HHHHHHHHHHHHHHHHHSSCEEEECSS---CSSEEEEEECCSC-SCCCSSCCC
T ss_pred             CCcCCCc---EEEEEECC-CCC-----HHHHHHHHHHHHHHHhhccceEEEcCC---CCcEEEEEcCCCC-CccccCCcC
Confidence            5799999   99999974 343     467899999999999999999999873   2346777777665 567777633


Q ss_pred             ceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          138 VLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       138 ~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      .-.+.       +.+        +       .+.....+++||||||||+-|++
T Consensus        74 ~~~q~-------~sl--------~-------~~C~~~g~i~HEl~HalGf~HE~  105 (201)
T 3edh_A           74 GGPQA-------ISI--------G-------KNCDKFGIVVHELGHVVGFWHEH  105 (201)
T ss_dssp             SSEEE-------EEE--------C-------GGGCSHHHHHHHHHHHHTBCCGG
T ss_pred             Cceee-------eec--------C-------CCcCccchhHHHHHHHhcchhhh
Confidence            11110       111        1       14445789999999999999985

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A

Probab=99.65  E-value=3.9e-16  Score=136.82  Aligned_cols=104  Identities=12%  Similarity=0.257  Sum_probs=75.0

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      -++.....||++.   +|+|.|..  ++     ..++++|++||+.|+++++|+|++...  ..| .|.|..+.+| +++
T Consensus        35 na~~~~~~~Wp~~---~VpY~I~~--~t-----~~~~~~I~~Am~~w~~~TCIrFvprt~--e~d-yI~f~~~~~G-C~S  100 (235)
T 3lq0_A           35 AAILGDEYLWSGG---VIPYTFAG--VS-----GADQSAILSGMQELEEKTCIRFVPRTT--ESD-YVEIFTSGSG-CWS  100 (235)
T ss_dssp             TEEECGGGSCGGG---EEEEEEES--CC-----HHHHHHHHHHHHHHHHHSSCEEEECSS--CSS-EEEEESSSSS-EEE
T ss_pred             ceeeCCCCcCCCC---EEEEEEcC--CC-----HHHHHHHHHHHHHHHhcccceEEEcCC--CCc-eEEEEeCCCC-Ccc
Confidence            4444457899999   99999983  44     478999999999999999999999753  444 5777776655 566


Q ss_pred             ccCCCCceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          132 FDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      +.|..|-        .-.+.+.       +       .+.....+++||||||||+-|++
T Consensus       101 ~vG~~gg--------~Q~lsL~-------~-------~gC~~~g~i~HEl~HaLGf~HEh  138 (235)
T 3lq0_A          101 YVGRISG--------AQQVSLQ-------A-------NGCVYHGTILHALMHAIGFYHEH  138 (235)
T ss_dssp             ESSCCSS--------EEEEEEC-------T-------TTTCSHHHHHHHHHHHHHBCCGG
T ss_pred             ccCCcCC--------cceEecC-------C-------CCCCccchHHHHHHHHhccceee
Confidence            6665330        0012221       0       14445799999999999999985

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}

Probab=99.61  E-value=5.9e-15  Score=126.27  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             CCCcccCC--CCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccC
Q 043639           57 GKPRWTRH--VPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDG  134 (261)
Q Consensus        57 ~~~kW~~~--~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG  134 (261)
                      ++++|++.  ++..|+|.|.. +++     ..++++|++||+.|+.+++|+|++... ...-|.  |..+ .| ++++.|
T Consensus         8 ~~~~W~k~~~G~v~VPY~i~~-~~~-----~~~~~~I~~A~~~w~~~TCIrFv~r~~-~~~yi~--i~~~-~G-C~S~vG   76 (199)
T 3lqb_A            8 KSCFWKKNANNIVEVPYVVSG-EFS-----INDKSVIANAISIFHAQTCIRFVPRSI-QADYLS--IENK-DG-CYSAIG   76 (199)
T ss_dssp             STTSCCBCTTSCEEEEEEECT-TSC-----HHHHHHHHHHHHHHHHHSSEEEEECSS-CSSEEE--EECC-SS-EEECSS
T ss_pred             CCCCCCCCCCCCEEEEEEECC-CCC-----HHHHHHHHHHHHHHHhccCceEEEcCC-CCcEEE--EEcC-CC-cccccC
Confidence            46899985  35579999974 343     467999999999999999999999874 333444  4443 22 455555


Q ss_pred             CCCceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          135 VLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       135 ~gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      ..|-        .-.+.+        +      ..+.....+++||||||||+-|++
T Consensus        77 ~~gg--------~q~~sl--------~------~~~C~~~g~i~HEl~HaLGf~HEh  111 (199)
T 3lqb_A           77 RTGG--------KQVVSL--------N------RKGCVYSGIAQHELNHALGFYHEQ  111 (199)
T ss_dssp             CCSS--------EEEEEE--------C------TTTCCSHHHHHHHHHHHHTCCCGG
T ss_pred             ccCC--------cceEEe--------c------CCCCCccchHHHHHHHHhccceee
Confidence            4220        001111        1      013445789999999999999975

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.34  E-value=8.1e-12  Score=122.16  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=67.5

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      -++.....||+ +   .|-|.|.. +++     ...+.+|++||+.|++.|+|+|++-.. ...-|.|  ..+  +.+++
T Consensus        40 n~~~~~~~rWp-~---~IPY~i~~-~~~-----~~~~~~I~~Am~~~~~~TCIrF~pr~~-e~~yi~i--~~~--~GC~S  104 (592)
T 4gwm_A           40 NSIIGEKYRWP-H---TIPYVLED-SLE-----MNAKGVILNAFERYRLKTCIDFKPWAG-ETNYISV--FKG--SGCWS  104 (592)
T ss_dssp             TCCCCGGGCCC-S---EEEEEECT-TSC-----HHHHHHHHHHHHHHHHHSSCEEEECSS-CSSEEEE--ECC--SSEEE
T ss_pred             hhhcCccccCC-c---eEEEEECC-CCC-----HHHHHHHHHHHHHHHhCCceeeEECCC-CCCeEEE--ecC--CcEee
Confidence            34444556998 4   68999974 343     567899999999999999999998654 3333444  343  22566


Q ss_pred             ccCC--CCceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          132 FDGV--LGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       132 fdG~--gg~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      +.|.  ||.  +       .+.+        +       .+.....+++|||+||||+-|++
T Consensus       105 ~vG~~~gg~--Q-------~lsl--------~-------~gC~~~Gti~HEl~HALGf~HEq  142 (592)
T 4gwm_A          105 SVGNRRVGK--Q-------ELSI--------G-------ANCDRIATVQHEFLHALGFWHEQ  142 (592)
T ss_dssp             CSSCCCSSE--E-------EEEE--------C-------TTCCCHHHHHHHHHHHHTCCCST
T ss_pred             eeCccCCCc--e-------EEee--------C-------CCcCCCChHHHHHHHHhcccccc
Confidence            6662  111  0       1111        1       14455799999999999999986

>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis}

Probab=99.13  E-value=3e-11  Score=110.99  Aligned_cols=52  Identities=23%  Similarity=0.376  Sum_probs=47.0

Q ss_pred             chhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhCCCC
Q 043639          173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG~~~  226 (261)
                      +..|++||+||.|||.|..++.+||+|.|.+  ..+.|++|||++||+|||.+.
T Consensus       342 ~a~v~AHELGH~LGL~HD~~~~cIM~p~~~~--~~~~L~~DDI~gIq~LYG~~~  393 (397)
T 3p24_A          342 YPGVMAHELGHILGANHADDPKDLMYSKYTG--YLFHLSEKNMDIIAKNLGWEI  393 (397)
T ss_dssp             STTHHHHHHHHHTTCCCBSCTTSTTBSSCCC--CCSCCCHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCcccCccccC--CCCCCCHHHHHHHHHhcCCCC
Confidence            3568999999999999999999999999986  467899999999999999754

>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}

Probab=97.43  E-value=7.1e-05  Score=63.42  Aligned_cols=50  Identities=24%  Similarity=0.261  Sum_probs=37.7

Q ss_pred             hhhhhhhhhhhcCCCCCCCCCCccccccCCC---CCCCCCCHHHHHHHHHHhC
Q 043639          174 ESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR---DKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~---~~~~~l~~dDI~~iq~LYG  223 (261)
                      ..+++||+||.|||.|..++..||+|...-.   .....|=+..+..||+.-|
T Consensus       140 ~~~~~HElGH~lGl~HC~~~~CiM~~~~s~~e~D~~~~~lC~~C~~kL~~~~~  192 (195)
T 2x7m_A          140 VKELTHELGHTFGLGHCPDRNCVMSFSSSLLEVDRKSPNFCRRCTELLQRNLK  192 (195)
T ss_dssp             HHHHHHHHHHHTTCCCCSCTTSTTSCCSSHHHHHHSCSSCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhcCCCCCCCCCeeCCCCCCHHHHhCCCccCCHHHHHHHHHhcC
Confidence            4789999999999999999999999765421   1344566777777776544

>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*

Probab=97.41  E-value=5.1e-05  Score=62.52  Aligned_cols=28  Identities=46%  Similarity=0.629  Sum_probs=24.8

Q ss_pred             chhhhhhhhhhhcCCCCCCCCCCcccccc
Q 043639          173 LESVAVHEIGHLLGLTHSPVKEAVMYPTL  201 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~~svM~p~y  201 (261)
                      +..+++||+||.|||.|-.++ -||++..
T Consensus       114 ~~k~~~HElGH~lGL~HC~~~-CvM~~s~  141 (163)
T 4axq_A          114 VVKEAVHEIGHVLGLKHCSNN-CVMRFSN  141 (163)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSS-STTSCCS
T ss_pred             HHHHHHHHHHHHcCCCCCCCc-ccCCCCC
Confidence            457899999999999999999 9998754

>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*

Probab=97.38  E-value=0.00014  Score=64.38  Aligned_cols=55  Identities=24%  Similarity=0.172  Sum_probs=33.7

Q ss_pred             CCCceeeecCCCCc----eeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCC
Q 043639          135 VLGVLAHSFSPESG----KFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVK  193 (261)
Q Consensus       135 ~gg~lAhA~~P~~G----~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~  193 (261)
                      .++.++.|++|...    -|.++...   ++... ......++-.+++||+||.|||.|++..
T Consensus       124 ~~~~lG~a~~P~~~~~~dGvvi~~~~---~g~~g-~~~~~yn~g~TltHEvGH~LGL~HtF~~  182 (262)
T 2cki_A          124 GQDILGYAQFPGGPAETDGVVIVDAA---FGTTG-TALPPFDKGRTATHEIGHWLNLYHIWGD  182 (262)
T ss_dssp             SCBCSEEECCTTSCGGGCSEEEEGGG---SSSST-TCCTTSCSSHHHHHHHHHHTTCCCTTCC
T ss_pred             CCCceEEEeCCCCccccCeEEEeccc---ccCCC-CccccccccchhhhhhhhhhcceeeccC
Confidence            35688899999641    12222211   11110 0112345678999999999999999875

>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum}

Probab=97.37  E-value=6.4e-05  Score=64.15  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             chhhhhhhhhhhcCCCCCCCCCCccccccCCC---CCCCCCCHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR---DKKVDLALDDIQGVQA  220 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~---~~~~~l~~dDI~~iq~  220 (261)
                      +..+++||+||.|||.|-.++..||++..+..   .....|=+.....+|.
T Consensus       143 v~k~~~HElGH~lGL~HC~~~~CvM~~s~s~~e~D~k~~~lCp~C~~kL~~  193 (210)
T 3lmc_A          143 IVKEGAHEIGHLFGLGHCDNPGCIMYCPRNLDELDRKRKYFCGKCRVQLNG  193 (210)
T ss_dssp             HHHHHHHHHHHHTTCCCCSCTTSTTSCCSSHHHHHHSCSCCCHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCcccCCCCChhHhcCCchhhCHHHHHHHHH
Confidence            45789999999999999999999999765421   1233344444445543

>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*

Probab=97.18  E-value=0.00038  Score=59.27  Aligned_cols=52  Identities=25%  Similarity=0.348  Sum_probs=38.2

Q ss_pred             cchhhhhhhhhhhcCCCCCCC-----------CCCccccccCCCCCCCCCCHHHHHHHHHHhC
Q 043639          172 DLESVAVHEIGHLLGLTHSPV-----------KEAVMYPTLKPRDKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~-----------~~svM~p~y~~~~~~~~l~~dDI~~iq~LYG  223 (261)
                      ....|++|||||.||+.|-..           ..-||+|..........++.--+..++..-.
T Consensus       140 ~~a~~~AHElGHnlG~~HD~~~~C~~~~~~~~~~cIM~~~~~~~~~~~~FS~CS~~~~~~~l~  202 (217)
T 3b8z_A          140 HAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLD  202 (217)
T ss_dssp             SHHHHHHHHHHHHTTCCCTTSHHHHHHHSSCCSSSTTCSSCSCCCTTCCSCHHHHHHHHHHHH
T ss_pred             chhhhhHhhhhhhcCCcCCCCCCCCCcccCCCCCeEcCchhcCCCCCCccCHHHHHHHHHHHh
Confidence            345799999999999999653           2459998764323455788888888876543

>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9

Probab=97.16  E-value=0.00036  Score=58.61  Aligned_cols=47  Identities=23%  Similarity=0.388  Sum_probs=34.7

Q ss_pred             chhhhhhhhhhhcCCCCCCC----CCCccccccCCCCCCCCCCHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV----KEAVMYPTLKPRDKKVDLALDDIQGVQA  220 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~----~~svM~p~y~~~~~~~~l~~dDI~~iq~  220 (261)
                      ...+++|||||.||+.|..+    ..-||+|..... ....++.--+..++.
T Consensus       135 ~a~~~AHElGH~lG~~HD~~~C~c~~cIM~~~~~~~-~~~~FS~CS~~~~~~  185 (197)
T 1qua_A          135 MAVTMAHELGHNLGMNHDGAGCSCATCIMAPVLSSG-PAKSFSDCSKHDYQS  185 (197)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGGGSCSSSTTCSSCCSS-CCSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCeeCCccccCC-CCCccCHhhHHHHHH
Confidence            45799999999999999765    467999865432 234677766666654

>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}

Probab=97.13  E-value=0.00045  Score=58.31  Aligned_cols=49  Identities=22%  Similarity=0.296  Sum_probs=35.1

Q ss_pred             cchhhhhhhhhhhcCCCCCCCC-----CCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          172 DLESVAVHEIGHLLGLTHSPVK-----EAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~~-----~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      ....|++|||||.||+.|..+.     .-||+|..... ....++.--+..++..
T Consensus       134 ~~a~~~AHElGH~lG~~HD~~~~C~c~~cIM~~~~~~~-~~~~FS~CS~~~~~~~  187 (202)
T 1yp1_A          134 LMAVVMAHELGHNLGMLHDDGYSCDCDVCIMAPSLSSD-PTKVFSNCSLILYEDF  187 (202)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCTTTSSCSSSTTCSBCCSS-CCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCeECCcccCCC-CCCCcCHHHHHHHHHH
Confidence            3467999999999999997653     27999865432 2346787777766643

>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A

Probab=97.12  E-value=0.00047  Score=58.28  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             cchhhhhhhhhhhcCCCCCCCC----C-CccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          172 DLESVAVHEIGHLLGLTHSPVK----E-AVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~~----~-svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ....|++|||||.||+.|..+.    + -||+|.... .....++.--+..++..-
T Consensus       137 ~~a~~~AHElGH~lG~~HD~~~~C~c~~cIM~~~~~~-~~~~~FS~CS~~~~~~~l  191 (203)
T 1kuf_A          137 MVAVTMTHELGHNLGMEHDDKDKCKCDTCIMSAVISD-KQSKLFSDCSKDYYQTFL  191 (203)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCTTTCCCSSSTTCSSCCT-TCCSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhhcCCCCCCCCCCCCCCeecCcccCC-CCCCCcChhcHHHHHHHH
Confidence            3457999999999999997653    2 799986543 234578887777776543

>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A

Probab=96.99  E-value=0.0007  Score=56.79  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             chhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      ...+++|||||.||+.|..+      ..-||+|.... .....++.--+..++..
T Consensus       133 ~a~~~AHElGH~lG~~HD~~~C~c~~~~cIM~~~~~~-~~~~~FS~CS~~~~~~~  186 (197)
T 1bud_A          133 VAITLAHEMAHNLGVSHDEGSCSCGGKSCIMSPSISD-ETIKYFSDCSYIQCRDY  186 (197)
T ss_dssp             HHHHHHHHHHHHTTCCCCCTTCCSSSSCCTTCSSCCT-TCCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCCccCCCCCCCCCCCcEeCcccCC-CCCCcCChhhHHHHHHH
Confidence            46799999999999999653      35699986542 23446888777777653

>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A

Probab=96.95  E-value=0.00046  Score=58.19  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             cchhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          172 DLESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      ....|++|||||.||+.|..+      ..-||+|.... .....++.--+..++..
T Consensus       135 ~~a~~~AHElGH~lG~~HD~~~C~C~~~~cIM~~~~~~-~~~~~FS~CS~~~~~~~  189 (202)
T 2w15_A          135 WVAVTMAHELGHNLGIHHDTGSCSCGAKSCIMASVLSK-VLSYEFSDCSQNQYETY  189 (202)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCTTCCCSSSEETTCSSCCC-CSCEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCccCCCCCCCCCCCCCcCchhcC-CCCCCCCHHHHHHHHHH
Confidence            346799999999999999654      24689986542 23346777677766643

>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*

Probab=96.90  E-value=0.00085  Score=57.11  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=36.0

Q ss_pred             hhhhhhhhhhhcCCCCCCCC----------CCccccccCCCCCCCCCCHHHHHHHHHHhC
Q 043639          174 ESVAVHEIGHLLGLTHSPVK----------EAVMYPTLKPRDKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~----------~svM~p~y~~~~~~~~l~~dDI~~iq~LYG  223 (261)
                      ..|++|||||.||+.|..+.          .-||+|... ......++.--++.++..-.
T Consensus       137 a~~~AHElGHnlG~~HD~~~c~~~~~~~~~~cIM~~~~~-~~~~~~FS~CS~~~~~~~l~  195 (214)
T 1r55_A          137 AATMAHEIGHSLGLSHDPDGCCVEAAAESGGCVMAAATG-HPFPRVFSACSRRQLRAFFR  195 (214)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTCCCSSCGGGTCBTTCSSCC-SSCCCBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcCCCCCCCCCCcCCCCCeeeCcccC-CCCCCcCCHHHHHHHHHHHc
Confidence            57999999999999997642          469998543 23345788888888876543

>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*

Probab=96.86  E-value=0.00085  Score=59.94  Aligned_cols=51  Identities=16%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             cchhhhhhhhhhhcCCCCCCC-----------CCCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          172 DLESVAVHEIGHLLGLTHSPV-----------KEAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~-----------~~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ....|++|||||.||+.|-..           ..-||+|..........++.--+..++..-
T Consensus       142 ~~a~t~AHElGHnlG~~HD~~~~C~~~~~~~~~~cIM~~~~~~~~~~~~FS~CS~~~~~~~l  203 (300)
T 2v4b_A          142 QAAFTTAHELGHVFNMPHDDAKQCASLNGVNQDSHMMASMLSNLDHSQPWSPCSAYMITSFL  203 (300)
T ss_dssp             THHHHHHHHHHHHTTCCCTTSGGGTTTC-----CCTTCCCC---CTTSCSCHHHHHHHHHHH
T ss_pred             cceehhhhhhhhhcCCcCCCCCCCCCcccCCCCCeecCCccccCCCCcCCCcccHHHHHHHH
Confidence            346799999999999999653           235999876532334578887777776544

>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}

Probab=96.81  E-value=0.0011  Score=61.05  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=37.1

Q ss_pred             cchhhhhhhhhhhcCCCCCCC-----------CCCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          172 DLESVAVHEIGHLLGLTHSPV-----------KEAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~-----------~~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ....|++|||||.||+.|-..           ..-||+|..........++.--+..|+..-
T Consensus       142 ~~a~~~AHElGHnlGm~HD~~~~C~~~~g~~~~~cIM~~~~~~~~~~~~FS~CS~~~~~~~l  203 (378)
T 2rjq_A          142 HAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFL  203 (378)
T ss_dssp             THHHHHHHHHHHHTTCCCTTSHHHHHHTCCCSSCCTTSSSCCCCCTTCCSCHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhcCccCCCCCCCCCccCCCCCCeEecccccCCCCCCCcCHHHHHHHHHHh
Confidence            345799999999999999653           246999876533345578887777776544

>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A

Probab=96.80  E-value=0.0012  Score=59.42  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=37.0

Q ss_pred             cchhhhhhhhhhhcCCCCCCCC----------C--CccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          172 DLESVAVHEIGHLLGLTHSPVK----------E--AVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~~----------~--svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ....|++|||||.||+.|-.+.          +  -||+|..........++.--+..|+..-
T Consensus       142 ~~a~t~AHElGHnlGm~HD~~~~C~~~~~~~~~~~cIM~~~~~~~~~~~~FS~CS~~~~~~~l  204 (316)
T 2rjp_A          142 QSAFTAAHQLGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFL  204 (316)
T ss_dssp             THHHHHHHHHHHHTTCCCTTSHHHHHHHCTTCCSCSTTCSSCCCCCTTCCSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcCccCCCCCCCCCCCCcCCCCCeEcCcccccCCCCcCCCHHHHHHHHHHH
Confidence            3467999999999999997541          2  5999876532345578887777776544

>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*

Probab=96.76  E-value=0.0012  Score=61.89  Aligned_cols=47  Identities=21%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             chhhhhhhhhhhcCCCCCCCC------CCccccccCCCCCCCCCCHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPVK------EAVMYPTLKPRDKKVDLALDDIQGVQA  220 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~------~svM~p~y~~~~~~~~l~~dDI~~iq~  220 (261)
                      +..|++|||||.||+.|..+.      .-||+|.... .....++.--+..|+.
T Consensus       137 ~a~t~AHElGHnlG~~HD~~~c~C~~~~cIM~~~~~~-~~~~~FS~CS~~~i~~  189 (419)
T 2dw0_A          137 VAVIMAHEMGHNLGINHDSGYCSCGDYACIMRPEISP-EPSTFFSNCSYFECWD  189 (419)
T ss_dssp             HHHHHHHHHHHHTTCCCCCTTCCCSSSCCTTSSSCCS-SCCSCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCccCCCCCcCCCCCeEeccCccC-CCccccccccHHHHHH
Confidence            457999999999999997654      5699986532 2345677655555543

>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}

Probab=96.74  E-value=0.0013  Score=61.89  Aligned_cols=47  Identities=26%  Similarity=0.338  Sum_probs=33.5

Q ss_pred             chhhhhhhhhhhcCCCCCCCC------CCccccccCCCCCCCCCCHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPVK------EAVMYPTLKPRDKKVDLALDDIQGVQA  220 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~~------~svM~p~y~~~~~~~~l~~dDI~~iq~  220 (261)
                      +..|++|||||.||+.|..+.      .-||+|.... .....++.--+..|+.
T Consensus       139 ~a~t~AHElGHnlGm~HD~~~c~C~~~~cIM~~~~~~-~~~~~FS~CS~~~i~~  191 (427)
T 2e3x_A          139 TAVIMAHELSHNLGMYHDGKNCICNDSSCVMSPVLSD-QPSKLFSNCSIHDYQR  191 (427)
T ss_dssp             HHHHHHHHHHHTTTCCCCCTTCCCTTSSCTTCSSCCS-SCCSCCCHHHHHHHHH
T ss_pred             eeeehHHHHHHhhCCccCCCCCcCCCCCcEECCcccC-CCCcccCcccHHHHHh
Confidence            457999999999999997653      4699986532 2345677655555543

>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...

Probab=96.73  E-value=0.0015  Score=56.85  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             hhhhhhhhhhhcCCCCCCCC------------CCccccccCCC--CCCCCCCHHHHHHHHHH
Q 043639          174 ESVAVHEIGHLLGLTHSPVK------------EAVMYPTLKPR--DKKVDLALDDIQGVQAL  221 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~------------~svM~p~y~~~--~~~~~l~~dDI~~iq~L  221 (261)
                      ..|++|||||.||+.|-.+.            .-||+|.....  .....++.--+..|+..
T Consensus       183 a~~~AHElGHnlG~~HD~~~~~~C~~~~~~~~~cIM~~~~~~g~~~~~~~FS~CS~~~~~~~  244 (257)
T 2ddf_A          183 DLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKT  244 (257)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTCTTTSCCGGGTCCCTTCSSCCCSCSTTTTSCCHHHHHHHHHH
T ss_pred             eeeeeeehhhhcCcccCCCCCCCCCCcccCCCceeEChhhhcCCCCCCCccCHHHHHHHHHH
Confidence            35799999999999997532            35899875321  23457887777766643

>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A

Probab=96.68  E-value=0.00067  Score=57.19  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=34.5

Q ss_pred             chhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      ...|++|||||.||+.|..+      ..-||+|.... .....++.--+..++..
T Consensus       136 ~a~~~AHElGHnlG~~HD~~~C~c~~~~cIM~~~~~~-~~~~~FS~CS~~~~~~~  189 (202)
T 1atl_A          136 MGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTK-GRSYEFSDDSMHYYERF  189 (202)
T ss_dssp             HHHHHHHHHHHHTTCCCCCTTCEETTEEETTCSSCCC-CSCEECCHHHHHHHHHH
T ss_pred             eEEEehhhhccccCceeCCCCCCCCCCCeEcCcccCC-CCCCccCHHhHHHHHHH
Confidence            45799999999999999654      24589986543 23456788777777654

>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*

Probab=96.60  E-value=0.0019  Score=60.74  Aligned_cols=48  Identities=21%  Similarity=0.233  Sum_probs=34.3

Q ss_pred             cchhhhhhhhhhhcCCCCCCCC------CCccccccCCCCCCCCCCHHHHHHHHH
Q 043639          172 DLESVAVHEIGHLLGLTHSPVK------EAVMYPTLKPRDKKVDLALDDIQGVQA  220 (261)
Q Consensus       172 ~l~~Va~HEiGHaLGL~Hs~~~------~svM~p~y~~~~~~~~l~~dDI~~iq~  220 (261)
                      ....|++|||||.||+.|..+.      .-||+|.... .....++.--+..|+.
T Consensus       145 ~~a~t~AHElGHnlG~~HD~~~c~C~~~~cIM~~~~~~-~~~~~FS~CS~~~i~~  198 (427)
T 2ero_A          145 LVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSC-EASFLFSDCSQKDHRE  198 (427)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCTTCCSSSSCCTTCSSCCT-TCCSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccCCCCCccCCCCeEeCCccCC-CCcccCCCccHHHHHH
Confidence            3457999999999999997653      4599986432 2355677766666654

>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*

Probab=96.47  E-value=0.0022  Score=56.93  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             hhhhhhhhhhhcCCCCCCCC------------CCccccccCCC--CCCCCCCHHHHHHHHHH
Q 043639          174 ESVAVHEIGHLLGLTHSPVK------------EAVMYPTLKPR--DKKVDLALDDIQGVQAL  221 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~------------~svM~p~y~~~--~~~~~l~~dDI~~iq~L  221 (261)
                      ..|++|||||.||+.|-.+.            .-||+|.....  .....++.--++.|+..
T Consensus       189 a~~~AHElGHnlGm~HD~~~~~~C~~~~~~~~~cIM~~~~~~g~~~~~~~FS~CS~~~~~~~  250 (288)
T 2i47_A          189 DLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKT  250 (288)
T ss_dssp             HHHHHHHHHHHTTCCCCCCSTTSSSCCGGGTCCCTTCSSCCCSCSGGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCccCCCCCCCCCCCcCCCCceEeccccccCcCCCCccCCccCHHHHHHH
Confidence            36899999999999997542            35899865321  23457887666666543

>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}

Probab=96.40  E-value=0.0024  Score=54.03  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             hhhhhhhhhhhcCCCCCCCC------------CCccccccCCCCCCCCCCHHHHHHHHHHhC
Q 043639          174 ESVAVHEIGHLLGLTHSPVK------------EAVMYPTLKPRDKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~------------~svM~p~y~~~~~~~~l~~dDI~~iq~LYG  223 (261)
                      -.|++|||||.||+.|-.+.            +-||+|.... .....++.--+..++....
T Consensus       134 a~~~AHElGH~lG~~HD~~~~~C~C~~~~~~~~cIM~~~~~~-~~~~~FS~CS~~~~~~~l~  194 (208)
T 4dd8_A          134 ACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGS-SFPRMFSDCSQAYLESFLE  194 (208)
T ss_dssp             HHHHHHHHHHHTTCCCGGGSTTCCCCCCSTTCCCTTCSCCTT-SCCCSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCcCCCCCCCCCCCCCCCCCceeccCccCC-CCCcccCHHHHHHHHHHHh
Confidence            36899999999999995321            1589986543 2345688888888887654

>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}

Probab=96.11  E-value=0.0044  Score=57.75  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             chhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      .-.|++|||||.||+.|-.+      ..-||+|. . ......++.--+..++..
T Consensus       139 ~a~t~AHElGHnlGm~HD~~~C~C~~~~CIM~~~-~-~~~~~~FS~CS~~~~~~~  191 (397)
T 3k7n_A          139 VASTITHELGHNLGIHHDKASCICIPGPCIMLKK-R-TAPAFQFSSCSIREYREY  191 (397)
T ss_dssp             HHHHHHHHHHHHTTCCCCCTTCCCSSSCBTTCSS-C-SSCCCBCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCccCCCCCCCCCCCceecCC-c-CCCCCCcChhhHHHHHHH
Confidence            45689999999999999543      24589987 3 223456777556655543

>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}

Probab=95.79  E-value=0.0058  Score=57.39  Aligned_cols=46  Identities=22%  Similarity=0.360  Sum_probs=24.7

Q ss_pred             chhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQA  220 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~  220 (261)
                      .-.|++|||||.||+.|-.+      ..-||+|. . ......++.--+..++.
T Consensus       144 ~a~t~AHElGHnlGm~HD~~~C~C~~~~CIMs~~-~-~~~~~~FS~CS~~~~~~  195 (422)
T 3k7l_A          144 VAITMAHEMGHNLGMNHDRGFCTCGFNKCVMSTR-R-TKPAYQFSSCSVREHQR  195 (422)
T ss_dssp             HHHHHHHHHHHHTTCCCCCSCCSSCC---------------CCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCccCCCCCcCCCCCcccCCC-c-CCCCCccChhHHHHHHH
Confidence            45689999999999999644      23589987 3 22345677755555554

>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3

Probab=95.52  E-value=0.0093  Score=56.85  Aligned_cols=97  Identities=21%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             CcceEEEeeecCCCCCCCccCCCCceeeec--------CCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhc
Q 043639          114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSF--------SPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLL  185 (261)
Q Consensus       114 ~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~--------~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaL  185 (261)
                      ++|+.|.....      |.+  ++++|.|-        .|..|.+.|+....   ..     .....+..|++|||+|||
T Consensus       108 ~~Dlvi~v~~~------p~~--~~~lA~A~~c~~~~~~RP~~G~i~~~p~~i---~~-----~~~~~~~~~~~HEi~HaL  171 (478)
T 1lml_A          108 NTDFVMYVASV------PSE--EGVLAWATTCQTFSDGHPAVGVINIPAANI---AS-----RYDQLVTRVVTHEMAHAL  171 (478)
T ss_dssp             SCSEEEEEECC------CCS--TTCCCEEEEEEECTTSCEEEEEEECCGGGC---CC-----SCCHHHHHHHHHHHHHHT
T ss_pred             CcCEEEEEEEe------cCC--CCeEEEEEeeeecCCCCceEEEEeeCHHHC---Cc-----ccchHHHHHHHHHHHHHH
Confidence            57877755432      222  34556552        23347788877542   10     112346789999999999


Q ss_pred             CCCCCCCCCCcccc---ccCCCCC--CCCCCHHHHHHHHHHhCCCC
Q 043639          186 GLTHSPVKEAVMYP---TLKPRDK--KVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       186 GL~Hs~~~~svM~p---~y~~~~~--~~~l~~dDI~~iq~LYG~~~  226 (261)
                      |+..+....--|.-   ...+...  .+--++.=....++-||...
T Consensus       172 GFs~~~f~~~~~~~~~~~~~G~~~~v~~l~tP~~~~~ar~hfgc~~  217 (478)
T 1lml_A          172 GFSGPFFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQYGCDT  217 (478)
T ss_dssp             TCSHHHHHHTTCEEEESCGGGCSSCEEEECCHHHHHHHHHHHTCTT
T ss_pred             ccChhHHhhhcccccccceecccceeEEEeCHHHHHHHHHHhCCCC
Confidence            99754211100110   0111111  12236777788899999643

>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}

Probab=93.92  E-value=0.028  Score=53.99  Aligned_cols=47  Identities=11%  Similarity=0.117  Sum_probs=31.5

Q ss_pred             chhhhhhhhhhhcCCCCCCC-------------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV-------------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~-------------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      +-.|++|||||.||+.|-.+             ..=||+|.-.  .....++.--+..++.+
T Consensus       134 ~A~t~AHELGHnLGm~HD~~~~~~~~C~C~~~~~~CIMs~~~~--~~~~~FS~CS~~~~~~~  193 (510)
T 3g5c_A          134 MAVTLAQSLAHNIGIISDKRKLASGECKCEDTWSGCIMGDTGY--YLPKKFTQCNIEEYHDF  193 (510)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHTCSCCSCCSSCBTTCTTSC--SCCCBCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCccCCCCCCCCCCcCCCCCCCccccCccc--CCCCCcCcccHHHHHHH
Confidence            45789999999999999531             1248987521  22456777666666553

>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A {Escherichia coli}

Probab=90.22  E-value=0.09  Score=52.48  Aligned_cols=20  Identities=35%  Similarity=0.487  Sum_probs=17.3

Q ss_pred             chhhhhhhhhhhcCCCCCCC
Q 043639          173 LESVAVHEIGHLLGLTHSPV  192 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~  192 (261)
                      +-.+..||+||+.||+|...
T Consensus       411 ~GNeFsHE~GHafGLgHypg  430 (869)
T 3ujz_A          411 LGNEFSHDVGHNYGLGHYVD  430 (869)
T ss_dssp             SHHHHHHHHHHTTTCCSSTT
T ss_pred             cCceeEeccccccCCCCCcc
Confidence            35699999999999999863

>3p1v_A Metallo-endopeptidase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.93A {Bacteroides ovatus atcc 8483} PDB: 4df9_A*

Probab=87.92  E-value=0.35  Score=44.97  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=16.8

Q ss_pred             chhhhhhhhhhhc-CCCCCCCC
Q 043639          173 LESVAVHEIGHLL-GLTHSPVK  193 (261)
Q Consensus       173 l~~Va~HEiGHaL-GL~Hs~~~  193 (261)
                      ...|++||+||++ ||+.+-..
T Consensus       287 ~~~V~vHE~GHsfggLaDEY~y  308 (407)
T 3p1v_A          287 FKPVVVHEFGHSFGGLADEYFY  308 (407)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCS
T ss_pred             ccceeeeecccccccccccccC
Confidence            3579999999988 78887743

>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17

Probab=84.52  E-value=0.27  Score=37.69  Aligned_cols=16  Identities=38%  Similarity=0.738  Sum_probs=14.2

Q ss_pred             chhhhhhhhhhhcCCC
Q 043639          173 LESVAVHEIGHLLGLT  188 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~  188 (261)
                      +..|++|||||.||+.
T Consensus        90 V~~vvvhEiahh~G~~  105 (114)
T 3e11_A           90 VRKTVVHEIAHHFGID  105 (114)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            4579999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1mmqa_	166	d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sap	6e-42
d1hy7a_	168	d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo	8e-42
d1i76a_	163	d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Hum	1e-40
d1xuca1	169	d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Huma	4e-39
d1hv5a_	162	d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus	2e-38
d2ovxa1	159	d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human	1e-37
d1y93a1	158	d.92.1.11 (A:106-263) Macrophage elastase (MMP-12)	1e-37
d1rm8a_	169	d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16	1e-37
d1hfca_	157	d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Hum	3e-37
d1qiba_	161	d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens)	5e-37
d1bqqm_	174	d.92.1.11 (M:) Membrane-type matrix metalloprotein	2e-35
d1sata2	243	d.92.1.6 (A:4-246) Metalloprotease {Serratia marce	3e-22
d1k7ia2	241	d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrys	8e-20
d1kapp2	246	d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas ae	3e-19
d1g9ka2	242	d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp	3e-17

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 6e-42
 Identities = 62/176 (35%), Positives = 84/176 (47%), Gaps = 15/176 (8%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y LFP  P+WT      ++Y     +    L    +  +  +A + W   IP+ F +   
Sbjct: 1   YSLFPNSPKWTSK---VVTYRIV--SYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVW 55

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF---HLDAAETWAVDFGSEKSP 168
               DI IGF  G HGD  PFDG    LAH+F+P +G     H D  E W          
Sbjct: 56  GTA-DIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGS-----S 109

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           + ++    A HE+GH LG+ HS    AVMYPT    D +   L+ DDI+G+Q LYG
Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYG 165

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

 Score =  138 bits (349), Expect = 8e-42
 Identities = 62/177 (35%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +  FPG P+W +     L+Y     N    L    + +  ++A   W  V P++F    +
Sbjct: 1   FRTFPGIPKWRKT---HLTYRIV--NYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAV 171
            + ADI I F   +HGD  PFDG   VLAH+++P  G   ++    +  D    K     
Sbjct: 56  GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPG---INGDAHFDDDEQWTKDTTGT 111

Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR--DKKVDLALDDIQGVQALYGSNP 226
           +L  VA HEIGH LGL HS   EA+MYP         +  L+ DDI G+Q+LYG  P
Sbjct: 112 NLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 1e-40
 Identities = 69/175 (39%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 53  VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
           +L PG P+W R     L+Y     N    L   +++   K AF  W+   P+ F      
Sbjct: 1   MLTPGNPKWERT---NLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQG 55

Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPV 169
           + ADI I FY  DHGD  PFDG  G+LAH+F P     G  H DA ETW     +     
Sbjct: 56  E-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN----- 109

Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYG 223
             +L  VA HE GH LGL HS    A+MYP    R+     L  DDI G+QA+YG
Sbjct: 110 -YNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 4e-39
 Identities = 65/178 (36%), Positives = 88/178 (49%), Gaps = 16/178 (8%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           Y +FP   +W++     L+Y     N    +  ++++  FK+AF  W+ V P++F    D
Sbjct: 1   YNVFPRTLKWSKM---NLTYRIV--NYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD 55

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
              ADI I F   +HGD  PFDG  G+LAH+F P     G  H D  ETW          
Sbjct: 56  GI-ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK----- 109

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYGSN 225
              +L  VA HE GH LGL HS    A+M+P      K    L  DD+QG+Q+LYG  
Sbjct: 110 -GYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPG 166

>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-3 (MMP-11)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (327), Expect = 2e-38
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
           +VL  G+  W +     L+Y          L    ++     A   W+ V P++F E  +
Sbjct: 2   FVLSGGR--WEKT---DLTYRIL--RFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHE 54

Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF---HLDAAETWAVDFGSEKSP 168
              ADI I F    HGD  PFDG  G+LAH+F P++ +    H D  ETW +        
Sbjct: 55  GR-ADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGT-- 111

Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
              DL  VA HE GH+LGL H+   +A+M P    R   + L+ DD +G+Q LYG
Sbjct: 112 ---DLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRY-PLSLSPDDRRGIQHLYG 162

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 1e-37
 Identities = 61/168 (36%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 55  FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
           F G  +W  H    ++Y     N    L    I   F RAF+ W++V P++F      D 
Sbjct: 1   FEGDLKWHHH---NITYWIQ--NYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 54

Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLE 174
           ADI I F   +HGDG PFDG  G+LAH+F P  G       +    +  S        L 
Sbjct: 55  ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDD--ELWSLGKGQGYSLF 112

Query: 175 SVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
            VA H+ GH LGL HS V EA+MYP  +  +    L  DD+ G++ LY
Sbjct: 113 LVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPP-LHKDDVNGIRHLY 159

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 1e-37
 Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           P W +H    ++Y  +  N    ++  D+    ++AF  W++V P+ F + +    ADI 
Sbjct: 2   PVWRKH---YITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGM-ADIL 55

Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           + F  G HGD   FDG  G+LAH+F P S   G  H D  E W    G        +L  
Sbjct: 56  VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGG------TNLFL 109

Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
            AVHEIGH LGL HS   +AVM+PT K  D     L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-37
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD----- 113
            +W       ++Y+    N+   +   + +   +RAF  W +V P++F E    +     
Sbjct: 2   QKWQHK---HITYSIK--NVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGK 56

Query: 114 -FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVD 172
              DI I F +G HGD  PFDG  G LAH++ P  G       ++         +    D
Sbjct: 57  RDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGND 116

Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
           L  VAVHE+GH LGL HS    A+M P  +  +     L  DD+QG+Q +YG
Sbjct: 117 LFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYG 168

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 3e-37
 Identities = 64/170 (37%), Positives = 85/170 (50%), Gaps = 16/170 (9%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
           PRW +     L+Y    EN    L   D+    ++AF  W++V P++F +  +    DI 
Sbjct: 1   PRWEQT---HLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQA-DIM 54

Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
           I F  GDH D  PFDG  G LAH+F P     G  H D  E W        +    +L  
Sbjct: 55  ISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERW------TNNFREYNLHR 108

Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
           VA HE+GH LGL+HS    A+MYP+         LA DDI G+QA+YG +
Sbjct: 109 VAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQ-LAQDDIDGIQAIYGRS 157

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 5e-37
 Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 58  KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADI 117
           KP+W ++    ++Y          L    +   F RAF  W+ V P+ F    D + ADI
Sbjct: 2   KPKWDKN---QITYRII--GYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGE-ADI 55

Query: 118 RIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVA 177
            I F   +HGDG PFDG  G+LAH+F+P +G       +    +  S    V   L  VA
Sbjct: 56  MINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD--ELWSLGKGVGYSLFLVA 113

Query: 178 VHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNP 226
            HE GH +GL HS    A+M P      K   L+ DDI+G+Q LYG++P
Sbjct: 114 AHEFGHAMGLEHSQDPGALMAPIY-TYTKNFRLSQDDIKGIQELYGASP 161

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-35
 Identities = 52/175 (29%), Positives = 73/175 (41%), Gaps = 13/175 (7%)

Query: 59  PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD----- 113
            +W  +    +++     N    +         ++AF  W S  P+ F E          
Sbjct: 4   LKWQHN---EITFCIQ--NYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGH 58

Query: 114 --FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAV 171
              ADI I F  G HGD  PFDG  G LAH++ P          ++        +     
Sbjct: 59  EKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGN 118

Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSN 225
           D+  VAVHE+GH LGL HS    A+M P  +  D +   L  DD +G+Q LYG  
Sbjct: 119 DIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGGE 173

>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Serratia marcescens [TaxId: 615]

 Score = 90.3 bits (223), Expect = 3e-22
 Identities = 41/196 (20%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 66  PMTLSYAF--SKENMINYLHIT-------DIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
           P+ L+++F   K +  N    T       + +   K +   WA V  ++F E      A+
Sbjct: 52  PVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKAN 111

Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSE---KSPVAVDL 173
           I  G Y+ D      +    G  A++F P +     D       +               
Sbjct: 112 ITFGNYSQDRPGHYDY----GTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYG 167

Query: 174 ESVAVHEIGHLLGLTHSPVKEA--------------------VM-YPTLKPRDKK----- 207
                HEIGH LGL+H     A                    +M Y +            
Sbjct: 168 RQTFTHEIGHALGLSHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHY 227

Query: 208 -VDLALDDIQGVQALY 222
                LDDI  +Q LY
Sbjct: 228 AAAPLLDDIAAIQHLY 243

>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 83.4 bits (205), Expect = 8e-20
 Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 39/191 (20%)

Query: 66  PMTLSYAFSKENMINYLHITDI-------KAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
              L++ F +         T             K +   W+ V  ++F E      A+I 
Sbjct: 56  SANLTFKFLQSVSSIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANIT 115

Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAV 178
            G Y  D      +       A+++ P + +    +   +                    
Sbjct: 116 FGNYTRDASGNLDYGT----QAYAYYPGNYQGAGSSWYNYNQSNIRN-PGSEEYGRQTFT 170

Query: 179 HEIGHLLGLTHSP-VKEAVMYPTLKPRDKKVD--------------------------LA 211
           HEIGH LGL H          P+        D                            
Sbjct: 171 HEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSIMSFWGENETGADYNGHYGGAPM 230

Query: 212 LDDIQGVQALY 222
           +DDI  +Q LY
Sbjct: 231 IDDIAAIQRLY 241

>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} Length = 246

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.8 bits (201), Expect = 3e-19
 Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 39/199 (19%)

Query: 52  YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDI-KAVFKRAFSKWASVIPVSFIETD 110
           Y        +         Y     ++  +   +   +A  K +   W+ V  + F++  
Sbjct: 59  YSFLTKPNDFF---NTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAG 115

Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPVA 170
             D  D+  G ++   G           L        G+       +++ +         
Sbjct: 116 QGDQGDLTFGNFSSSVGGAAFAF-----LPDVPDALKGQSWYLINSSYSANVNPANG--- 167

Query: 171 VDLESVAVHEIGHLLGLTHSPVKEA--------------------VM-YPTLKPRDKKVD 209
                   HEIGH LGL+H     A                    VM Y   +   +   
Sbjct: 168 NYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFK 227

Query: 210 LA------LDDIQGVQALY 222
            A      LDDI  +Q LY
Sbjct: 228 GAYSSAPLLDDIAAIQKLY 246

>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas sp., tac ii 18 [TaxId: 306]

 Score = 76.5 bits (187), Expect = 3e-17
 Identities = 37/169 (21%), Positives = 47/169 (27%), Gaps = 39/169 (23%)

Query: 86  DIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP 145
             K   K +   WA V  V+F E       D  + F N        F    G  A ++ P
Sbjct: 82  LQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFAN--------FSASNGGAAFAYLP 133

Query: 146 ESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV-KEAVMYPTLKPR 204
            S +              ++             HEIGH LGL+H          PT +  
Sbjct: 134 NSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDA 193

Query: 205 DKKVD------------------------------LALDDIQGVQALYG 223
               D                                LDDI  VQ LYG
Sbjct: 194 VYAEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYG 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	100.0
d1hv5a_	162	Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI	100.0
d1xuca1	169	Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI	100.0
d1hy7a_	168	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	100.0
d1i76a_	163	Neutrophil collagenase (MMP-8) {Human (Homo sapien	100.0
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	100.0
d1qiba_	161	Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ovxa1	159	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	100.0
d1y93a1	158	Macrophage elastase (MMP-12) {Human (Homo sapiens)	100.0
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	100.0
d1bqqm_	174	Membrane-type matrix metalloproteinase (CDMT1-MMP)	100.0
d1sata2	243	Metalloprotease {Serratia marcescens [TaxId: 615]}	99.96
d1kapp2	246	Metalloprotease {Pseudomonas aeruginosa [TaxId: 28	99.95
d1k7ia2	241	Metalloprotease {Erwinia chrysanthemi [TaxId: 556]	99.95
d1g9ka2	242	Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId	99.93
d1asta_	200	Astacin {European fresh water crayfish (Astacus as	99.57
d1c7ka_	132	Zinc protease {Streptomyces caespitosus [TaxId: 53	99.15
d1su3a1	67	Fibroblast collagenase (MMP-1) {Human (Homo sapien	98.09
d1slma1	65	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	98.02
d1eaka1	76	Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId:	97.81
d1l6ja1	77	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	97.74
d1bswa_	197	Snake venom metalloprotease {Five-pace snake (Agki	97.32
d2i47a1	254	TNF-alpha converting enzyme, TACE, catalytic domai	97.2
d1kufa_	201	Snake venom metalloprotease {Taiwan habu (Trimeres	97.2
d1nd1a_	202	Snake venom metalloprotease {Terciopelo (Bothrops	97.14
d1quaa_	197	Snake venom metalloprotease {Chinese five-pace sna	97.04
d1r55a_	203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1atla_	200	Snake venom metalloprotease {Western diamonback ra	96.85
d1lmla_	475	Leishmanolysin {Leishmania major [TaxId: 5664]}	94.38
d3e11a1	113	Uncharacterized protein Acel_2062 {Acidothermus ce	87.27

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=268.71  Aligned_cols=162  Identities=39%  Similarity=0.723  Sum_probs=143.0

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |++||+.+||+++   +|||+|.  +++++++..+++++|++||+.|+++++|+|+|+.+ +.+||+|.|....+....+
T Consensus         1 y~~~~~~~kW~~~---~iTY~i~--~~~~~~~~~~~~~~i~~A~~~W~~v~~i~F~~v~~-~~~di~i~~~~~~~~~~~~   74 (166)
T d1mmqa_           1 YSLFPNSPKWTSK---VVTYRIV--SYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVW-GTADIMIGFARGAHGDSYP   74 (166)
T ss_dssp             CCBCTTCCCCCSS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHHHSSCEEEECSS-SCCSEEEEEECSCCSSSCC
T ss_pred             CCCCCCCCCCCCC---ceEEEEe--cCCCCCCHHHHHHHHHHHHHHHhCcCCeeEEeccc-CCcceEEEEeccccCCccc
Confidence            6789999999998   9999997  56777888899999999999999999999999987 7899999999988888889


Q ss_pred             ccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-CC
Q 043639          132 FDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KK  207 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-~~  207 (261)
                      ++|..+.+++++.+..   ++++||..+.|.....     ...+++.|++|||||||||+|++++++||||.|.+.. ..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~~~~~  149 (166)
T d1mmqa_          75 FDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSS-----LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQN  149 (166)
T ss_dssp             CCSSSSCCEEECCSSSTTTTCEEEETTSCEESSSS-----SSEEHHHHHHHHHHHHHTBCCCSCTTSTTSSSSCSSCTTS
T ss_pred             ccccceeeeeccCCCccccceEEecchhhhhcccc-----ccchhhhhhhhhhccccCCCCCCCCCCeECceecCCCCcC
Confidence            9999999999987754   7899998888765432     3567789999999999999999999999999998643 45


Q ss_pred             CCCCHHHHHHHHHHhCC
Q 043639          208 VDLALDDIQGVQALYGS  224 (261)
Q Consensus       208 ~~l~~dDI~~iq~LYG~  224 (261)
                      ..|+++||++||+|||.
T Consensus       150 ~~l~~~Di~aiq~LYG~  166 (166)
T d1mmqa_         150 FKLSQDDIKGIQKLYGK  166 (166)
T ss_dssp             CCCCHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHhCc
Confidence            68999999999999994

>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-3 (MMP-11)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-39  Score=266.42  Aligned_cols=158  Identities=39%  Similarity=0.663  Sum_probs=140.6

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |++.  +.||+++   +|||+|.  +++++++.++++++|++||+.|+++++|+|+||.+ +.+||+|.|....+.++.+
T Consensus         2 y~l~--G~kW~~~---~iTY~~~--~~~~~~~~~~~~~~i~~A~~~W~~v~~i~F~ev~~-~~~di~i~~~~~~~~~~~~   73 (162)
T d1hv5a_           2 FVLS--GGRWEKT---DLTYRIL--RFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLP   73 (162)
T ss_dssp             EEEE--TTEEEEC---EEEEEEC--SCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SBCSEEEEEECSCSSSSCC
T ss_pred             cccc--CCcCCCC---eEEEEEE--ecCCCCCHHHHHHHHHHHHHHHhccCCceEEEeec-CCCceEEEEeccccCCccc
Confidence            4543  6799999   9999997  67888888999999999999999999999999987 6899999999988888888


Q ss_pred             ccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCC
Q 043639          132 FDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKV  208 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~  208 (261)
                      +++.+++++++++|+.   +++.|+.++.|+....     .+.+++.|++|||||+|||+|++++++||+|+|... ...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~g~~~~~v~~HEiGHaLGL~H~~~~~svM~p~~~~~-~~~  147 (162)
T d1hv5a_          74 FDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDN-----QGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFR-YPL  147 (162)
T ss_dssp             CCSSSSCCEEEECCTTSSSEEEEEETTSCEESSCS-----SSEEHHHHHHHHHHHHTTCCCCSCTTSTTCSSCCCC-SSC
T ss_pred             ccCCCceeeeeecCCCccccceeecchhccccccc-----cCcchhhhhhhhhhhhccCCCCCCCCccccCcccCC-CCC
Confidence            8899999999999875   5799999999976543     367889999999999999999999999999998753 356


Q ss_pred             CCCHHHHHHHHHHhC
Q 043639          209 DLALDDIQGVQALYG  223 (261)
Q Consensus       209 ~l~~dDI~~iq~LYG  223 (261)
                      .|+++||++||+|||
T Consensus       148 ~l~~~Di~~i~~LYG  162 (162)
T d1hv5a_         148 SLSPDDRRGIQHLYG  162 (162)
T ss_dssp             CCCHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHhcC
Confidence            899999999999998

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=264.67  Aligned_cols=164  Identities=39%  Similarity=0.709  Sum_probs=138.1

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |++||+.+||.++   +|||+|.  +++++++.+++++++++||+.|+++++++|+||.+ ..+++.+............
T Consensus         1 ~~~~pg~~kW~~~---~iTY~i~--~~~~~~~~~~~~~~i~~Af~~W~~~~~i~f~ev~~-~~~~~~~~~~~~~~~~~~~   74 (169)
T d1xuca1           1 YNVFPRTLKWSKM---NLTYRIV--NYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYP   74 (169)
T ss_dssp             CCBCCSBCCCSCS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEEESS-SCCSEEEEEECSSCSSSCC
T ss_pred             CccCCCCCCCCCC---eEEEEEe--cCCCCCCHHHHHHHHHHHHHHHHhhcCccEEEecc-cCCceeEeeeccccccccc
Confidence            6789999999999   9999998  67888888999999999999999999999999987 5567766665555555556


Q ss_pred             ccCCCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCC
Q 043639          132 FDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKK  207 (261)
Q Consensus       132 fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~  207 (261)
                      +.+.++..++++.+.   .++++++.+..|...      ..+.+++.|++|||||||||+|++++++||||.|... ...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~HEiGHaLGL~H~~d~~svM~p~~~~~~~~~  148 (169)
T d1xuca1          75 FDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSS------SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSH  148 (169)
T ss_dssp             CCSSSSCCEEECCSCSTTTTCEEEETTSCEESS------SSSEEHHHHHHHHHHHHHTBCCCSCTTSTTSSSCCCCCCSS
T ss_pred             ccccccccccccCCCCceeeeEecccccccccc------cCCceeeeehhhhhccccCCCCCCCCCceecceeecCCCCC
Confidence            667777888887765   378999988777543      2367889999999999999999999999999998753 346


Q ss_pred             CCCCHHHHHHHHHHhCCCCC
Q 043639          208 VDLALDDIQGVQALYGSNPN  227 (261)
Q Consensus       208 ~~l~~dDI~~iq~LYG~~~~  227 (261)
                      +.|+.+||++||+|||+|.+
T Consensus       149 ~~L~~~Di~aiq~LYGa~~~  168 (169)
T d1xuca1         149 FMLPDDDVQGIQSLYGPGDE  168 (169)
T ss_dssp             CCCCHHHHHHHHHHHCCSCC
T ss_pred             CCCCHHHHHHHHHHhCcCCC
Confidence            78999999999999999864

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=260.73  Aligned_cols=163  Identities=40%  Similarity=0.708  Sum_probs=137.7

Q ss_pred             eeeCCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCC
Q 043639           52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        52 y~~~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~  131 (261)
                      |..|++.+||++.   +|||+|.  +++++++.++++++|++||+.|+++++++|+|+.+ +.+||.+.|....+.+...
T Consensus         1 ~~~~~g~pkW~~~---~iTY~i~--~~~~~~~~~~~~~~i~~A~~~W~~~~~i~F~e~~~-~~~d~~~~~~~~~~~~~~~   74 (168)
T d1hy7a_           1 FRTFPGIPKWRKT---HLTYRIV--NYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYP   74 (168)
T ss_dssp             CCBCTTCCCCSSS---EEEEEEC--CBCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSSCSSSCC
T ss_pred             CCCCCCCCCCCCC---eEeEEEe--cCCCCCCHHHHHHHHHHHHHHHHhhcCceeEeccC-CcCceEEEeeccccccccc
Confidence            4467888999998   9999997  56788888899999999999999999999999987 7899999999888877777


Q ss_pred             ccCCCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC--CC
Q 043639          132 FDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR--DK  206 (261)
Q Consensus       132 fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~--~~  206 (261)
                      +++..++.++++.+.   .+++.|+.+..|...      ..+.+++.|++|||||||||+|++++++||+|.|...  ..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~HEiGHALGL~H~~~~~svM~~~~~~~~~~~  148 (168)
T d1hy7a_          75 FDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKD------TTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLT  148 (168)
T ss_dssp             CCSSSSCCEEECCSSSTTTTCEEEETTSCEESS------SSSEEHHHHHHHHHHHHHTBCCCSCTTSTTSCC------CT
T ss_pred             cccccccccccccCCCCeeeeEeeccccccccc------cccccceeeeHhhhccccCCCcCCCCCceecccccCCCCCc
Confidence            888888888887664   378999988776533      2356788999999999999999999999999987653  24


Q ss_pred             CCCCCHHHHHHHHHHhCCCC
Q 043639          207 KVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       207 ~~~l~~dDI~~iq~LYG~~~  226 (261)
                      ...|+++||++||+|||+||
T Consensus       149 ~~~l~~~Di~~lq~LYGanp  168 (168)
T d1hy7a_         149 RFRLSQDDINGIQSLYGPPP  168 (168)
T ss_dssp             TCCCCHHHHHHHHHHHCSCC
T ss_pred             cCCCCHHHHHHHHHHhCcCC
Confidence            56799999999999999997

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=255.00  Aligned_cols=157  Identities=43%  Similarity=0.778  Sum_probs=136.0

Q ss_pred             CCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccC
Q 043639           55 FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDG  134 (261)
Q Consensus        55 ~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG  134 (261)
                      .|+.+||++.   +|||+|.  +++++++..++++++++||+.|+++++++|+||.+ +.+||++.|...++.....+++
T Consensus         3 ~~g~~kW~~~---~iTY~~~--~~~~~~~~~~~~~~i~~Af~~ws~v~~i~F~ev~~-~~~~~~~~~~~~~~~~~~~~~~   76 (163)
T d1i76a_           3 TPGNPKWERT---NLTYRIR--NYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINIAFYQRDHGDNSPFDG   76 (163)
T ss_dssp             CTTCCCCSCS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSCCCCS
T ss_pred             CCCCCCCCCC---eEEEEEe--cCCCCCCHHHHHHHHHHHHHHHhcccCceEEEecC-CCcceEEEeeecccccccccCC
Confidence            4788999999   9999997  56788888999999999999999999999999986 7889999998887766667778


Q ss_pred             CCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCC-CCCCCC
Q 043639          135 VLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPR-DKKVDL  210 (261)
Q Consensus       135 ~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~-~~~~~l  210 (261)
                      .++.++.++.+.   .++++|+..+.|....      .+.+++.|++|||||||||+|++++++||+|.|.+. .....|
T Consensus        77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~~~~~~~l  150 (163)
T d1i76a_          77 PNGILAHAFQPGQGIGGDAHFDAEETWTNTS------ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSL  150 (163)
T ss_dssp             SSSCCEEECCSSSTTTTCEEEETTSCCBSSS------SSCBHHHHHHHHHHHHHTBCCCSCTTSTTSSSCCCCCCTTCCC
T ss_pred             cccceeeccCCCCceeeEEeecccccccccc------ccchheeehhhhhhhhhccCCCCCCCCeEcceecCCCCcCCcC
Confidence            888888887665   3899999998876442      356789999999999999999999999999998754 345689


Q ss_pred             CHHHHHHHHHHhC
Q 043639          211 ALDDIQGVQALYG  223 (261)
Q Consensus       211 ~~dDI~~iq~LYG  223 (261)
                      +++||++||+|||
T Consensus       151 ~~~Di~aiq~LYG  163 (163)
T d1i76a_         151 PQDDIDGIQAIYG  163 (163)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999998

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=246.98  Aligned_cols=154  Identities=43%  Similarity=0.787  Sum_probs=134.5

Q ss_pred             CcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCc
Q 043639           59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGV  138 (261)
Q Consensus        59 ~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~  138 (261)
                      |||.++   +|||+|.  +++++++.+++++++++||+.|+++++++|+|+.+ +.+|+.+.+.....+...+++|..+.
T Consensus         1 prW~~~---~itY~~~--~~~~~~~~~~~~~~i~~A~~~W~~~~~i~F~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (157)
T d1hfca_           1 PRWEQT---HLTYRIE--NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGN   74 (157)
T ss_dssp             CCCSCS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSSCSSSCCCCSSSSC
T ss_pred             CCCCCC---eeEEEEe--cCCCCCCHHHHHHHHHHHHHHHHhhcCccEEEecc-CCcccceeeeccccccccccCCCcce
Confidence            699988   9999997  66788888899999999999999999999999987 67899998888877777888888888


Q ss_pred             eeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHHH
Q 043639          139 LAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDI  215 (261)
Q Consensus       139 lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dDI  215 (261)
                      .+.+++|+   .++++||.+..|....      .+.+++.|++|||||||||+|++++.+||+|.|... ....|+.+||
T Consensus        75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~v~~HEiGHaLGL~H~~~~~svM~~~~~~~-~~~~l~~~Di  147 (157)
T d1hfca_          75 LAHAFQPGPGIGGDAHFDEDERWTNNF------REYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFS-GDVQLAQDDI  147 (157)
T ss_dssp             CEEECCSSSTTTTCEEEETTSCCBSSS------SSCBHHHHHHHHHHHHHTCCCCSCTTSTTCSSCCCC-SSCCCCHHHH
T ss_pred             eEEeecCCCCeeeeEEecccccccccc------ccchhhhhHhhhhhhhccCCCCCCCCccccccccCC-CCCCCCHHHH
Confidence            88888776   4899999988776432      356778999999999999999999999999988753 4568999999


Q ss_pred             HHHHHHhCCC
Q 043639          216 QGVQALYGSN  225 (261)
Q Consensus       216 ~~iq~LYG~~  225 (261)
                      ++||+|||+|
T Consensus       148 ~~i~~lYG~n  157 (157)
T d1hfca_         148 DGIQAIYGRS  157 (157)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHcCCC
Confidence            9999999986

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=241.75  Aligned_cols=157  Identities=41%  Similarity=0.724  Sum_probs=128.7

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      .+||.++   +|||+|.  +++++++.++++++|++||+.|+++++|+|+++.+ +.+++.+.+......+...+.|..+
T Consensus         2 ~~kW~~~---~iTY~i~--~~~~~~~~~~~~~~v~~A~~~W~~~~~i~F~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   75 (161)
T d1qiba_           2 KPKWDKN---QITYRII--GYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDGYPFDGKDG   75 (161)
T ss_dssp             CCCCSSS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSS-SCCSEEEEEECSCCSSSCCCCSSSS
T ss_pred             cCCCCCC---eEEEEEe--cCCCCCCHHHHHHHHHHHHHHHHhhcCcceEEccC-CcCceEEEeccccccccccccCccc
Confidence            4799998   9999997  67888888999999999999999999999999987 6777777766655555566667666


Q ss_pred             ceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCCHHH
Q 043639          138 VLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDD  214 (261)
Q Consensus       138 ~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~~dD  214 (261)
                      ..+..+.+.   .+++.|+..+.+....     ..+.+++.|++|||||+|||+|++++++||+|+|... ....|+++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~HEiGHaLGL~H~~~~~svM~~~~~~~-~~~~l~~~D  149 (161)
T d1qiba_          76 LLAHAFAPGTGVGGDSHFDDDELWSLGK-----GVGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYT-KNFRLSQDD  149 (161)
T ss_dssp             CCEEECCSCSTTTTCEEEETTSCEESSS-----SSSEEHHHHHHHHHHHHHTCCCCSCTTSTTSSSCCCC-SSCCCCHHH
T ss_pred             ceeeeecCCCCcccceeecchhcccccc-----cccchhheeeeecccccccCCCCCCCCCeeccccCCC-CCCCCCHHH
Confidence            666655443   3678888776665432     2366789999999999999999999999999988653 456899999


Q ss_pred             HHHHHHHhCCCC
Q 043639          215 IQGVQALYGSNP  226 (261)
Q Consensus       215 I~~iq~LYG~~~  226 (261)
                      |++||+|||+||
T Consensus       150 i~~i~~LYG~~p  161 (161)
T d1qiba_         150 IKGIQELYGASP  161 (161)
T ss_dssp             HHHHHHHHCCCC
T ss_pred             HHHHHHHhCcCC
Confidence            999999999987

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=235.26  Aligned_cols=156  Identities=38%  Similarity=0.651  Sum_probs=124.9

Q ss_pred             CCCCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccC
Q 043639           55 FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDG  134 (261)
Q Consensus        55 ~~~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG  134 (261)
                      |+|.+||.+.   +|||+|.  +++++++.+++++++++||+.|+++++++|+||.+...+.+.+.+ .........+.+
T Consensus         1 ~~g~~kW~~~---~lTy~i~--~~~~~~~~~~~~~~i~~A~~~W~~~~~i~F~ev~~~~~~~~~~~~-~~~~~~~~~~~~   74 (159)
T d2ovxa1           1 FEGDLKWHHH---NITYWIQ--NYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFG-VAEHGDGYPFDG   74 (159)
T ss_dssp             CCCSCCCSCS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSTTSSEEEEEE-CSSCSSSCCCCS
T ss_pred             CCCCCccCCC---EEEEEEe--ccCCCCCHHHHHHHHHHHHHHHHccCCceEEEecCCCCceEEEEe-ecccCCcccCCC
Confidence            5788999998   9999997  678888899999999999999999999999999874444445544 333333444555


Q ss_pred             CCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCCCCCCCC
Q 043639          135 VLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLA  211 (261)
Q Consensus       135 ~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~~~~~l~  211 (261)
                      ..+...+.+.+.   .++++++....+....     ..+.+++.|++|||||||||+|+.++++||+|.|.+. ....|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~HElGHaLGL~H~~~~~sVM~p~~~~~-~~~~l~  148 (159)
T d2ovxa1          75 KDGLLAHAFPPGPGIQGDAHFDDDELWSLGK-----GQGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFT-EGPPLH  148 (159)
T ss_dssp             SSSCCEEECCSSSTTTTCEEEETTSCEECSS-----SSSEEHHHHHHHHHHHHTTCCCCSCTTSTTSSSCCCC-CSCSCC
T ss_pred             cccceeccccCCCceeeeEeeccceeeccCC-----ccccceeeeehhhhcccccCCCCCCCCceecceecCC-CCCCCC
Confidence            556666665544   3789998877765432     2367889999999999999999999999999998753 456899


Q ss_pred             HHHHHHHHHHh
Q 043639          212 LDDIQGVQALY  222 (261)
Q Consensus       212 ~dDI~~iq~LY  222 (261)
                      .+||++||+||
T Consensus       149 ~~Di~~i~~LY  159 (159)
T d2ovxa1         149 KDDVNGIRHLY  159 (159)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999999

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=235.16  Aligned_cols=154  Identities=42%  Similarity=0.755  Sum_probs=130.3

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      |+||.++   +|||+|.  +++++++.+++++++++||+.|+++++++|+|+.+ ..+++.|.+...++.....+.+..+
T Consensus         1 G~kW~~~---~itY~~~--~~~~~~~~~~~~~~i~~a~~~w~~~~~i~F~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   74 (158)
T d1y93a1           1 GPVWRKH---YITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGG   74 (158)
T ss_dssp             CCCCSSS---EEEEEEC--CCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSS-SCCSEEEEEECSCCSSSCCCCSSSS
T ss_pred             CCCCCCC---eEEEEEe--cCCCCCCHHHHHHHHHHHHHHHHhhcCceEEeccc-CCcceEEEeeccccccccccccccc
Confidence            5799988   9999997  67888999999999999999999999999999987 7788888888776666666777788


Q ss_pred             ceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-CCCCCCHH
Q 043639          138 VLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALD  213 (261)
Q Consensus       138 ~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-~~~~l~~d  213 (261)
                      +.+.+++|..   +.+.|+....+...      ..+.+++.|++|||||||||+|++++++||||.+.+.. ..+.|+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~HEiGHaLGL~H~~d~~svM~~~~~~~~~~~~~l~~~  148 (158)
T d1y93a1          75 ILAHAFGPGSGIGGDAHFDEDEFWTTH------SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSAD  148 (158)
T ss_dssp             CCEEECCSCSTTTTCEEEETTSCEESS------SSSEEHHHHHHHHHHHHTTCCCCSCTTSTTSSSCCCCCGGGCCCCHH
T ss_pred             eeeeccCCCCcEeceEeeccccccccc------cCCccHHHHhhhhhhhhcCCCCCCCCCccccccccCCCCCcCCCCHH
Confidence            8999988865   56777765555422      23567899999999999999999999999999887643 45689999


Q ss_pred             HHHHHHHHhC
Q 043639          214 DIQGVQALYG  223 (261)
Q Consensus       214 DI~~iq~LYG  223 (261)
                      ||++||+|||
T Consensus       149 Di~~lq~LYG  158 (158)
T d1y93a1         149 DIRGIQSLYG  158 (158)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhhC
Confidence            9999999998

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-34  Score=231.83  Aligned_cols=159  Identities=36%  Similarity=0.642  Sum_probs=126.2

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCC------CcceEEEeeecCCCCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD------FADIRIGFYNGDHGDGEP  131 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~------~aDI~I~f~~~~hgd~~~  131 (261)
                      |.||.++   +|||+|.  +++++++.++++++|++||+.|+++++++|+++....      .+++.+.+..........
T Consensus         1 G~kW~~~---~iTy~~~--~~~~~~~~~~~~~~i~~Af~~W~~~~~i~F~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1rm8a_           1 GQKWQHK---HITYSIK--NVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSP   75 (169)
T ss_dssp             CCCCSSS---EEEEEEC--CCCTTTCHHHHHHHHHHHHHHHHTTSSCEEEECCTTCCCSSSCCCSEEEEEESSCCSSSCC
T ss_pred             CCCCCCC---eEEEEEe--cCCCCCCHHHHHHHHHHHHHHHHhcCCcceEEeccccccccccccceEeeccccccCcccc
Confidence            5799999   9999997  5678888899999999999999999999999997633      345666665555444455


Q ss_pred             ccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-CC
Q 043639          132 FDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KK  207 (261)
Q Consensus       132 fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-~~  207 (261)
                      +.+..+..+++++|..   +++.++....+.....   .....+++.|++|||||||||+|+.++++||||.+.+.. ..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~HEiGHaLGL~H~~~~~svM~p~~~~~~~~~  152 (169)
T d1rm8a_          76 FDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNP---NHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDN  152 (169)
T ss_dssp             CCSSSSCCEEECCSCSTTTTCEEEETTSCEESSCC---SSSSEEHHHHHHHHHHHHHTCCCCSCTTSTTSSSCCCCCCTT
T ss_pred             ccCCCcceecccCCCCCccceeeeccccccccccc---cCCcchhhhhhhhhhhhhhcCCCCCCCCceeccccccCCCCC
Confidence            5566677888887764   5677776655543322   124567899999999999999999999999999987643 45


Q ss_pred             CCCCHHHHHHHHHHhCC
Q 043639          208 VDLALDDIQGVQALYGS  224 (261)
Q Consensus       208 ~~l~~dDI~~iq~LYG~  224 (261)
                      +.|+.+||++||+|||+
T Consensus       153 ~~L~~~Di~~i~~LYGp  169 (169)
T d1rm8a_         153 FKLPNDDLQGIQKIYGP  169 (169)
T ss_dssp             CCCCHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHhhCc
Confidence            78999999999999996

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=227.33  Aligned_cols=162  Identities=36%  Similarity=0.578  Sum_probs=128.2

Q ss_pred             CCCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCC-------CCcceEEEeeecCCCCC
Q 043639           57 GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY-------DFADIRIGFYNGDHGDG  129 (261)
Q Consensus        57 ~~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~-------~~aDI~I~f~~~~hgd~  129 (261)
                      .|.||+++   +|||+|.  +++++++.++++++|++||+.|+++++++|+++...       +.+||.|.+....+...
T Consensus         2 ~G~kW~~~---~ity~~~--~~~~~~~~~~~~~~i~~A~~~W~~~~~i~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (174)
T d1bqqm_           2 QGLKWQHN---EITFCIQ--NYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDS   76 (174)
T ss_dssp             CSCCCSCS---EEECEEC--CCCTTTCHHHHHHHHHHHHHHHHHHSSCEEECCSCCSSCTTSSSCCSSEEEEECSCSSSS
T ss_pred             cCCCCCCC---eEEEEEe--ccCCCCCHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccceEEEeccccCCCc
Confidence            47899999   9999998  567788889999999999999999999999988652       46789998887766555


Q ss_pred             CCccCCCCceeeecCCC---CceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCCCccccccCCCC-
Q 043639          130 EPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-  205 (261)
Q Consensus       130 ~~fdG~gg~lAhA~~P~---~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~svM~p~y~~~~-  205 (261)
                      ....+..+..++++...   .+++.++....+.....   ...+.+++.|++|||||+|||+|+.++.|||+|.+.+.. 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~HEiGHaLGL~H~~d~~SvM~p~~~~~~~  153 (174)
T d1bqqm_          77 TPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNE---DLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDT  153 (174)
T ss_dssp             CCCCSSSSEEEEECCSCSTTTTCEEEETTSCCBSTTS---CCSSCBHHHHHHHHHHHTTTCCCCSCTTCSSSSBCCCCCS
T ss_pred             ccccCCCcceeeeccCCCCccceeeeccccccccccc---CCcchhhhhhhhcccccccCCCCCCCCCCccCCcccCCCC
Confidence            45555556666665443   25667766555443322   234678899999999999999999999999999887543 


Q ss_pred             CCCCCCHHHHHHHHHHhCCCC
Q 043639          206 KKVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       206 ~~~~l~~dDI~~iq~LYG~~~  226 (261)
                      ..+.|+++||++||+|||+|.
T Consensus       154 ~~~~L~~~Di~~i~~LYG~~~  174 (174)
T d1bqqm_         154 ENFVLPDDDRRGIQQLYGGES  174 (174)
T ss_dssp             TTCCCCHHHHTTHHHHTTTCC
T ss_pred             CCCCCCHHHHHHHHHHhCcCC
Confidence            456899999999999999873

>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Serratia marcescens [TaxId: 615]

Probab=99.96  E-value=8.9e-30  Score=222.48  Aligned_cols=156  Identities=24%  Similarity=0.347  Sum_probs=116.7

Q ss_pred             CCCcccCC----CCeeEEEEEecCCcC----------CcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEee
Q 043639           57 GKPRWTRH----VPMTLSYAFSKENMI----------NYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFY  122 (261)
Q Consensus        57 ~~~kW~~~----~~~~LTY~~~~~~~~----------~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~  122 (261)
                      ++.+|...    .+.+|||+|......          ..++ +++++++++||+.|++|++|+|+||.+...|||+|.|.
T Consensus        39 ~~~~W~~~~~~g~~~~lTYsF~~~~~~~~~~~~~~~~~~fs-~~q~~~~r~a~~~Ws~vani~F~ev~~~~~adi~~~~~  117 (243)
T d1sata2          39 ENQTWNGYKVFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFS-AEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNY  117 (243)
T ss_dssp             TCCCTTCTTCCSCCEEEEEECCCCCTTCCCTTSCBSCBCCC-HHHHHHHHHHHHHHHHHBSEEEEECCTTSCCSEEEEEE
T ss_pred             CCCccCCCCCCCceeEEEEEecCCCcccccccCCcccccCC-HHHHHHHHHHHHHHHhhcCcEEEEecCCCceEEEEEec
Confidence            46678643    245899999753111          0122 57999999999999999999999998877899999998


Q ss_pred             ecCCCCCCCccCCCCceeeecCCCC--------ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCC
Q 043639          123 NGDHGDGEPFDGVLGVLAHSFSPES--------GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKE  194 (261)
Q Consensus       123 ~~~hgd~~~fdG~gg~lAhA~~P~~--------G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~  194 (261)
                      ..++++.    +..+.+++||+|..        |+++++.++.|.....     .+...+.|++|||||+|||.|+++.+
T Consensus       118 ~~~~~~~----~~~~~~a~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~t~lHEIGHaLGL~Hp~d~~  188 (243)
T d1sata2         118 SQDRPGH----YDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPA-----TEDYGRQTFTHEIGHALGLSHPGDYN  188 (243)
T ss_dssp             CEEETTE----ECCSCCEEECCTTCEETTEECTTEEEEETTSHHHHCTT-----TCHHHHHHHHHHHHHHHTCCCSSCCC
T ss_pred             cCCCCCC----CCCCcceeeecCCCcccCcccccccccccccccccCCc-----ccchHHHHHHHHHHHHhcCCCCCCCC
Confidence            7665543    34577899999863        6899999888875432     35667899999999999999998753


Q ss_pred             --------------------CccccccCC-------CCCCCCCCHHHHHHHHHHh
Q 043639          195 --------------------AVMYPTLKP-------RDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       195 --------------------svM~p~y~~-------~~~~~~l~~dDI~~iq~LY  222 (261)
                                          +||......       ..-..+|+.+||++||+||
T Consensus       189 ~~~~~~~~~~~~~~~d~~~~SVMSY~~~~~~~~~~~~~~~~tpm~~DIaAiQ~LY  243 (243)
T d1sata2         189 AGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLY  243 (243)
T ss_dssp             SSSSCCCGGGCSBTTCSTTTCTTCCSCGGGGTCBCTTCCCCSCCHHHHHHHHHHH
T ss_pred             cccCCcccccccccccCCcceeEecCCccCCCCcccccccCCCCHHHHHHHHHhC
Confidence                                588422111       0123468899999999999

>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=5e-28  Score=211.53  Aligned_cols=125  Identities=25%  Similarity=0.379  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCCC-----Cceeeeccccccc
Q 043639           85 TDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE-----SGKFHLDAAETWA  159 (261)
Q Consensus        85 ~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P~-----~G~vhfd~~e~wt  159 (261)
                      +++++++++||+.|++|++|+|+||.+...|||+|.|....+          +..+++++|.     .|+++++.++.|.
T Consensus        90 ~~q~~~vr~A~~~ws~va~i~F~ev~~~~~adI~~~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~  159 (246)
T d1kapp2          90 AQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSV----------GGAAFAFLPDVPDALKGQSWYLINSSYS  159 (246)
T ss_dssp             HHHHHHHHHHHHHHHTTBSEEEEEEEESSCSSEEEEEECSCC----------SSSEEECCTTSCTTTTTEEEEECSSSCC
T ss_pred             HHHHHHHHHHHHHHHHhhCcceeeccCCCceEEEEEEeCCCC----------CCeeEeccCCCCcccccccccccccccc
Confidence            689999999999999999999999988788999999875433          3456666654     4789999999887


Q ss_pred             ccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCC--------------------CccccccCCC-------CCCCCCCH
Q 043639          160 VDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKE--------------------AVMYPTLKPR-------DKKVDLAL  212 (261)
Q Consensus       160 ~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~--------------------svM~p~y~~~-------~~~~~l~~  212 (261)
                      .....   ..+.+++.|++|||||+|||.|+++.+                    +||.......       .....|+.
T Consensus       160 ~~~~~---~~g~~~~~t~lHEIGHaLGL~Hp~d~~~~~~~~~~~~~~~~~d~~~~TVMSY~~~~~~~~~~~~~~~~tp~~  236 (246)
T d1kapp2         160 ANVNP---ANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLL  236 (246)
T ss_dssp             TTTSC---CTTSHHHHHHHHHHHHHHTCCCSSSCCTTSSCCCGGGCSSTTCSTTTCTTCCSCGGGGTCBCTTCCCSSCCH
T ss_pred             cccCc---ccchhHHHHHHHHHHHhhCCCcCCCCccccCCcccccccccccCCcceeeccCCcCCCCccccccccCCCCH
Confidence            54332   346677899999999999999998754                    5894321110       11346889


Q ss_pred             HHHHHHHHHh
Q 043639          213 DDIQGVQALY  222 (261)
Q Consensus       213 dDI~~iq~LY  222 (261)
                      +||++||+||
T Consensus       237 ~DI~AiQ~LY  246 (246)
T d1kapp2         237 DDIAAIQKLY  246 (246)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999999999

>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.95  E-value=1e-27  Score=209.02  Aligned_cols=155  Identities=22%  Similarity=0.302  Sum_probs=115.4

Q ss_pred             CCCcccCC----CCeeEEEEEecCCcCC---------cCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeee
Q 043639           57 GKPRWTRH----VPMTLSYAFSKENMIN---------YLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYN  123 (261)
Q Consensus        57 ~~~kW~~~----~~~~LTY~~~~~~~~~---------~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~  123 (261)
                      ++.+|...    .+.+|||+|... .+.         .+ .+++++++++||+.|++|++|+|+||.+...+||+|.+..
T Consensus        43 ~~~~W~~~~~~~~~~~ltYsF~~~-~~~~~~~~~~~~~~-s~~q~~~~r~A~~~Ws~vani~F~ev~~~~~adi~~~~~~  120 (241)
T d1k7ia2          43 ENVSWNGTNVFGKSANLTFKFLQS-VSSIPSGDTGFVKF-NAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYT  120 (241)
T ss_dssp             TCEETTEESCCSCCEEEEEEECSC-CSCCTTSCBCCBCC-CHHHHHHHHHHHHHHHTTBSEEEEECCTTCCCSEEEEEEC
T ss_pred             CCCccCCCCCCCCeeEEEEEccCC-CCccccCCcccccc-cHHHHHHHHHHHHHHHhhcCCEEEEecCCCcccEEEEeee
Confidence            35567532    245899999743 111         12 2578999999999999999999999998788999999887


Q ss_pred             cCCCCCCCccCCCCceeeecCCCC----ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCCC-----
Q 043639          124 GDHGDGEPFDGVLGVLAHSFSPES----GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKE-----  194 (261)
Q Consensus       124 ~~hgd~~~fdG~gg~lAhA~~P~~----G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~~-----  194 (261)
                      ..+++.    .+.+.+++||.|..    |+++|+.++.|.....     .+.+.+.|++|||||+|||.|+++.+     
T Consensus       121 ~~~~~~----~~~~~~a~a~~p~~~~~~g~~~~~~~~~~~~~~~-----~g~~~~~t~~HEIGHaLGL~H~~d~~~~~~~  191 (241)
T d1k7ia2         121 RDASGN----LDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPG-----SEEYGRQTFTHEIGHALGLAHPGEYNAGEGD  191 (241)
T ss_dssp             BCTTSC----BCCSCCEEECCSSSSTTTTEEEEETTSHHHHCTT-----TSHHHHHHHHHHHHHHHTCCCSSSCCSSSSC
T ss_pred             cCCCCc----CCCCcceeeecCCCcccccceeeccccccccCCc-----cchhHHHHHHHHHHHHhcCCCCCcCccccCC
Confidence            665443    33467899999864    8999999888865432     36677899999999999999998643     


Q ss_pred             ---------------CccccccCC-------CCCCCCCCHHHHHHHHHHh
Q 043639          195 ---------------AVMYPTLKP-------RDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       195 ---------------svM~p~y~~-------~~~~~~l~~dDI~~iq~LY  222 (261)
                                     +||......       ......|+.+||++||+||
T Consensus       192 ~~~~~~~~~~Ds~~~TVMSY~~~~~~~~~~~~~~~~tpm~~DIaAlQ~LY  241 (241)
T d1k7ia2         192 PSYNDAVYAEDSYQFSIMSFWGENETGADYNGHYGGAPMIDDIAAIQRLY  241 (241)
T ss_dssp             CCGGGCSSTTCSTTTCTTCSSCGGGGTCBCTTCCCCSCCHHHHHHHHHHH
T ss_pred             cccccccccccCccceeecCCCcCCCCccccccccCCCCHHHHHHHHHhC
Confidence                           588422111       0123468899999999999

>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas sp., tac ii 18 [TaxId: 306]

Probab=99.93  E-value=1.9e-25  Score=194.35  Aligned_cols=155  Identities=27%  Similarity=0.301  Sum_probs=110.8

Q ss_pred             CCCcccCC---CCeeEEEEEecCCcC---C-------cCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeee
Q 043639           57 GKPRWTRH---VPMTLSYAFSKENMI---N-------YLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYN  123 (261)
Q Consensus        57 ~~~kW~~~---~~~~LTY~~~~~~~~---~-------~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~  123 (261)
                      ++.+|...   +..+|||+|......   +       .+ .+++++++|.||+.|++|++|+|+||.+...+++.|.|..
T Consensus        41 ~g~~W~~~~~~g~~~itysF~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~A~~~ws~va~i~F~ev~~~~~~~~~i~f~~  119 (242)
T d1g9ka2          41 SGASWHDLNNDGVINLTYTFLTAPPVGYASRGLGTFSQF-SALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFAN  119 (242)
T ss_dssp             TCCCCCCTTCSSSEEEEEEECSSCCTTGGGGCCCSEECC-CHHHHHHHHHHHHHHHTTBSEEEEESCCCC-CCEEEEEEE
T ss_pred             CCCcccCCCCCCceEEEEEecCCCCcccCccccCCcccc-CHHHHHHHHHHHHHHHhhcCCEEEEccCCCCceEEEEEEe
Confidence            45677643   245799999753210   0       12 2578999999999999999999999987666777777754


Q ss_pred             cCCCCCCCccCCCCceeeecCCCC---ceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCCCC-------
Q 043639          124 GDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVK-------  193 (261)
Q Consensus       124 ~~hgd~~~fdG~gg~lAhA~~P~~---G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~~~-------  193 (261)
                      .        ++.++..++++.|..   |+++++.++.|......   ..+...+.|++|||||+|||.|+++.       
T Consensus       120 ~--------~~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~t~~HEIGHaLGL~H~~~~~~~~~~~  188 (242)
T d1g9ka2         120 F--------SASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTP---GEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNP  188 (242)
T ss_dssp             E--------CCGGGCSEEECCTTSTTTTEEEEECBTTBCTTTSC---CTTSHHHHHHHHHHHHHHTCCCSSCCC-----C
T ss_pred             c--------cCCCCcEEEEeccCCCcCccccccccccccccccc---ccchhHHHHHHHHhhhhhccccCCCCccccCCc
Confidence            2        355677888887753   78888888777654332   33567789999999999999999764       


Q ss_pred             -------------CCccc-cccCCC----------CCCCCCCHHHHHHHHHHhC
Q 043639          194 -------------EAVMY-PTLKPR----------DKKVDLALDDIQGVQALYG  223 (261)
Q Consensus       194 -------------~svM~-p~y~~~----------~~~~~l~~dDI~~iq~LYG  223 (261)
                                   .+||. +.....          .-..+|+..||++||+|||
T Consensus       189 ~~~~~~~~~d~~~~SVMsY~~~~~~~~~~~~~~~~~~~~tp~~~DIaAlQ~lYG  242 (242)
T d1g9ka2         189 TYRDAVYAEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYG  242 (242)
T ss_dssp             CGGGCSSTTCSTTTCTTCSSCGGGGTCCCCCTTCCCCCSSCCHHHHHHHHHHHC
T ss_pred             ccccccccccCCCceeecCCCccCCcccccccccccccCCCCHHHHHHHHHhcC
Confidence                         27994 322110          1134689999999999998

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

Probab=99.57  E-value=5.8e-15  Score=124.41  Aligned_cols=98  Identities=14%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             CCcccCCCCeeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHhcCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCC
Q 043639           58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLG  137 (261)
Q Consensus        58 ~~kW~~~~~~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg  137 (261)
                      ..+|+..   +|.|.|.  ++.     ...+.+|++|++.|++.|+|+|++... ....|+| |..+  +.++++.|.-+
T Consensus         7 ~~~Wp~~---~VpY~~~--~~~-----~~~~~~I~~A~~~~~~~TcirF~~r~~-~~~~i~~-~~~~--~gC~S~vG~~~   72 (200)
T d1asta_           7 EYLWSGG---VIPYTFA--GVS-----GADQSAILSGMQELEEKTCIRFVPRTT-ESDYVEI-FTSG--SGCWSYVGRIS   72 (200)
T ss_dssp             GGSCGGG---EEEEEEE--SCC-----HHHHHHHHHHHHHHHHHSSCEEEECSS-CSSEEEE-ESSS--SSEEECSSCCS
T ss_pred             cccCCCC---EEEEEEC--CCC-----HHHHHHHHHHHHHHHhCcCceeeeCCC-CCCcEEE-ecCC--CcccccCCeEC
Confidence            3589999   9999997  332     467899999999999999999999764 4555555 4322  22555555321


Q ss_pred             ceeeecCCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCCCC
Q 043639          138 VLAHSFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSP  191 (261)
Q Consensus       138 ~lAhA~~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~Hs~  191 (261)
                      -        .=.+.+.              ..+.....+++|||||||||-|++
T Consensus        73 g--------~q~~~l~--------------~~~c~~~g~i~HEl~HaLGf~HEh  104 (200)
T d1asta_          73 G--------AQQVSLQ--------------ANGCVYHGTIIHELMHAIGFYHEH  104 (200)
T ss_dssp             S--------EEEEEEC--------------TTTTCSHHHHHHHHHHHHTBCCGG
T ss_pred             C--------cceEEeC--------------CCCcCccCccHHHHHHHhcccchh
Confidence            0        0011111              114445789999999999999986

>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Zinc protease
domain: Zinc protease
species: Streptomyces caespitosus [TaxId: 53502]

Probab=99.15  E-value=2.2e-10  Score=87.49  Aligned_cols=125  Identities=23%  Similarity=0.220  Sum_probs=87.5

Q ss_pred             eeEEEEEecCCcCCcCCHHHHHHHHHHHHHHhHh-cCCceEEEcCCCCCcceEEEeeecCCCCCCCccCCCCceeeecCC
Q 043639           67 MTLSYAFSKENMINYLHITDIKAVFKRAFSKWAS-VIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP  145 (261)
Q Consensus        67 ~~LTY~~~~~~~~~~l~~~~~~~~i~~Af~~Ws~-vt~l~F~ev~~~~~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~~P  145 (261)
                      .+|+|.-+.        ..+++..|.++.+.|+. |.++++++.   ..++|.+.-...          ++|..|..--+
T Consensus         2 vTl~YdaS~--------A~~f~s~ia~~a~iWNssV~NV~L~~~---s~~~~~~~~~~~----------~~g~~a~~~g~   60 (132)
T d1c7ka_           2 VTVTYDPSN--------APSFQQEIANAAQIWNSSVRNVQLRAG---GNADFSYYEGND----------SRGSYAQTDGH   60 (132)
T ss_dssp             EEEEEEEEE--------CGGGHHHHHHHHHHHHHHCSSEEEEEC---SSCSEEEEEECC----------TTCCEEEECSS
T ss_pred             EEEEEcCCC--------CchHHHHHHHHHHHhhcCCCceEeeec---CCCCeEEEEecC----------CCCCcCccCCC
Confidence            367777653        24688999999999986 799999775   458887654322          12223333334


Q ss_pred             CCceeeecccccccccCCCCCCCccccchhhhhhhhhhhcCCCC--CCCCCCccccccCCCC-CCCCCCHHHHHHHHHHh
Q 043639          146 ESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH--SPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALY  222 (261)
Q Consensus       146 ~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaLGL~H--s~~~~svM~p~y~~~~-~~~~l~~dDI~~iq~LY  222 (261)
                      +.|.|.++...+           .+++-..|++|||||.|||..  +.....+|...-.+.. .+..+...++..+.++|
T Consensus        61 G~g~i~lg~q~~-----------qgy~~~RIaaHE~GH~LGLPD~~~GpCS~LMSG~saG~sCtN~~PnaaErarVe~~~  129 (132)
T d1c7ka_          61 GRGYIFLDYQQN-----------QQYDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALW  129 (132)
T ss_dssp             SCEEEEEEHHHH-----------HHSCHHHHHHHHHHHHHTCCCCTTSCTTCGGGTTTTCTTCCCCSCCHHHHHHHHHHT
T ss_pred             CcEEEEechHHh-----------cCCCchheeeehhccccCCCCCCCCccHHhhCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence            568888875432           266778999999999999964  4456889975443322 34567899999999999


Q ss_pred             C
Q 043639          223 G  223 (261)
Q Consensus       223 G  223 (261)
                      +
T Consensus       130 a  130 (132)
T d1c7ka_         130 A  130 (132)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.5e-07  Score=62.35  Aligned_cols=17  Identities=12%  Similarity=0.208  Sum_probs=15.8

Q ss_pred             HHHHHHhcCCCCCCCCC
Q 043639           12 IFIIFIHESPQCIAVRS   28 (261)
Q Consensus        12 ~~~~~~m~~PRCGvpD~   28 (261)
                      =.|+++|++|||||||+
T Consensus        50 ~~T~~~M~~PRCGvpDv   66 (67)
T d1su3a1          50 AETLKVMKQPRCGVPDV   66 (67)
T ss_dssp             HHHHHHHTSCBCSSCSC
T ss_pred             HHHHHHHCCCCCCCCCC
Confidence            47999999999999998

>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=98.02  E-value=7.1e-07  Score=60.95  Aligned_cols=18  Identities=11%  Similarity=0.065  Sum_probs=16.0

Q ss_pred             HHHHHHHhcCCCCCCCCC
Q 043639           11 LIFIIFIHESPQCIAVRS   28 (261)
Q Consensus        11 ~~~~~~~m~~PRCGvpD~   28 (261)
                      ==.|+++|++|||||||+
T Consensus        48 D~~T~~~M~~PRCGvpDv   65 (65)
T d1slma1          48 DSDTLEVMRKPRCGVPDV   65 (65)
T ss_dssp             CHHHHHHTTSCBCSSCSS
T ss_pred             CHHHHHHHCcCCCCCCCC
Confidence            347999999999999996

>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Gelatinase A (MMP-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.9e-06  Score=59.42  Aligned_cols=17  Identities=18%  Similarity=0.116  Sum_probs=15.5

Q ss_pred             HHHHHHhcCCCCCCCCC
Q 043639           12 IFIIFIHESPQCIAVRS   28 (261)
Q Consensus        12 ~~~~~~m~~PRCGvpD~   28 (261)
                      =.|+++|++|||||||+
T Consensus        60 ~~T~~~m~~pRCGvpDv   76 (76)
T d1eaka1          60 QNTIETMRKPRCGNPDV   76 (76)
T ss_dssp             HHHHHHHTSCBCSSCSS
T ss_pred             HHHHHHHccCCCCCCCC
Confidence            46899999999999996

>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.1e-06  Score=58.93  Aligned_cols=17  Identities=12%  Similarity=0.131  Sum_probs=15.8

Q ss_pred             HHHHHHhcCCCCCCCCC
Q 043639           12 IFIIFIHESPQCIAVRS   28 (261)
Q Consensus        12 ~~~~~~m~~PRCGvpD~   28 (261)
                      -.|+++|++|||||||+
T Consensus        60 ~~T~~~M~~pRCG~pDv   76 (77)
T d1l6ja1          60 SATLKAMRTPRCGVPDL   76 (77)
T ss_dssp             HHHHHHHTSCBCSSCSS
T ss_pred             HHHHHHHccCCCCCCCC
Confidence            47999999999999997

>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]

Probab=97.32  E-value=0.00011  Score=59.40  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             hhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          175 SVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       175 ~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      .|++|||||.||+.|-..      ++-||+|.... .....++..-++.++..
T Consensus       135 ~~~AHElGH~lG~~HD~~~c~C~~~~~IM~~~~~~-~~~~~fS~CS~~~~~~~  186 (197)
T d1bswa_         135 ITLAHEMAHNLGVSHDEGSCSCGGKSCIMSPSISD-ETIKYFSDCSYIQCRDY  186 (197)
T ss_dssp             HHHHHHHHHHTTCCCCCTTCCSSSSCCTTCSSCCT-TCCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCccCCCCCCCCCCCeeCCCccCC-CCCCCcCHHHHHHHHHH
Confidence            578899999999999653      24599986543 23445888887777764

>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: TNF-alpha converting enzyme, TACE, catalytic domain
domain: TNF-alpha converting enzyme, TACE, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00015  Score=60.85  Aligned_cols=49  Identities=29%  Similarity=0.426  Sum_probs=36.2

Q ss_pred             hhhhhhhhhhhcCCCCCCCC------------CCccccccCCCC--CCCCCCHHHHHHHHHHh
Q 043639          174 ESVAVHEIGHLLGLTHSPVK------------EAVMYPTLKPRD--KKVDLALDDIQGVQALY  222 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~------------~svM~p~y~~~~--~~~~l~~dDI~~iq~LY  222 (261)
                      ..|++|||||.||+.|-.+.            .-||+|......  ..+.++.--++.++.+.
T Consensus       181 ~~~~AHElGH~lG~~HD~~~~~~C~~~~~~~~~~IMs~~~~~~~~~~~~~fS~CS~~~~~~~l  243 (254)
T d2i47a1         181 DLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKTI  243 (254)
T ss_dssp             HHHHHHHHHHHTTCCCCCCSTTSSSCCGGGTCCCTTCSSCCCSCSGGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCeEeccccccCCCCCCCcCCHhHHHHHHHHH
Confidence            35899999999999998753            259988664322  24678888888877654

>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]

Probab=97.20  E-value=0.00017  Score=58.57  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             hhhhhhhhhhhcCCCCCCC-----CCCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          174 ESVAVHEIGHLLGLTHSPV-----KEAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~-----~~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ..|++|||||.||+.|-..     .+-||.|.... .....++..-++.++..-
T Consensus       137 a~~~AHElGH~lG~~HD~~~~C~~~~~IM~~~~~~-~~~~~fS~CS~~~~~~~l  189 (201)
T d1kufa_         137 AVTMTHELGHNLGMEHDDKDKCKCDTCIMSAVISD-KQSKLFSDCSKDYYQTFL  189 (201)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTTCCCSSSTTCSSCCT-TCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCeeCCcccCC-CCCCCcCHhHHHHHHHHH
Confidence            4578999999999999643     23599986543 234568888888887653

>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Terciopelo (Bothrops asper), bap1 [TaxId: 8722]

Probab=97.14  E-value=0.00015  Score=58.86  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=33.4

Q ss_pred             hhhhhhhhhhhcCCCCCCC------CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          174 ESVAVHEIGHLLGLTHSPV------KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~------~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      -.|++|||||.||+.|-.+      ..-||+|.... ..+..++.--++.++.+
T Consensus       137 a~~~AHElGH~lG~~HD~~~c~C~~~~cIM~~~~~~-~~~~~fS~CS~~~~~~~  189 (202)
T d1nd1a_         137 AVTMAHELGHNLGIDHDTGSCSCGAKSCIMASVLSK-VLSYEFSDCSQNQYETY  189 (202)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTCCCSSSEETTCSSCCC-CSCEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCccCCCCCCCCCCCcccccccCC-CCCCccCHHHHHHHHHH
Confidence            3578999999999999643      23589886543 23456888777777653

>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]

Probab=97.04  E-value=0.00026  Score=57.15  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=34.4

Q ss_pred             chhhhhhhhhhhcCCCCCCC----CCCccccccCCCCCCCCCCHHHHHHHHHH
Q 043639          173 LESVAVHEIGHLLGLTHSPV----KEAVMYPTLKPRDKKVDLALDDIQGVQAL  221 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~Hs~~----~~svM~p~y~~~~~~~~l~~dDI~~iq~L  221 (261)
                      ...|++|||||.||+.|-.+    +.-||.|...+. ....++.--++.++..
T Consensus       135 ~~~~~AHElGH~lG~~HD~~~c~c~~cIM~~~~~~~-~~~~fS~CS~~~~~~~  186 (197)
T d1quaa_         135 MAVTMAHELGHNLGMNHDGAGCSCATCIMAPVLSSG-PAKSFSDCSKHDYQSF  186 (197)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGGGSCSSSTTCSSCCSS-CCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCccCCCCCCCCCeecCCccCCC-CCCccCHHHHHHHHHH
Confidence            34689999999999999643    246898765432 3446888777777664

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: ADAM33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0004  Score=56.21  Aligned_cols=48  Identities=27%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             hhhhhhhhhhhcCCCCCCCC----------CCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          174 ESVAVHEIGHLLGLTHSPVK----------EAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~----------~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ..|++|||||.||+.|-.+.          .-||.|.... .....++.--++.++.+-
T Consensus       133 a~v~AHElGH~lG~~HD~~~~~~~~~~~~~~~IM~~~~~~-~~~~~fS~CS~~~~~~~l  190 (203)
T d1r55a_         133 AATMAHEIGHSLGLSHDPDGCCVEAAAESGGCVMAAATGH-PFPRVFSACSRRQLRAFF  190 (203)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTCCCSSCGGGTCBTTCSSCCS-SCCCBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCccCCCCccccCCCCCCCEecccccCC-CCCCCcCHhHHHHHHHHH
Confidence            46899999999999996542          2489775432 234568888888887754

>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]

Probab=96.85  E-value=0.00029  Score=57.04  Aligned_cols=48  Identities=23%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             hhhhhhhhhhhcCCCCCCCC------CCccccccCCCCCCCCCCHHHHHHHHHHh
Q 043639          174 ESVAVHEIGHLLGLTHSPVK------EAVMYPTLKPRDKKVDLALDDIQGVQALY  222 (261)
Q Consensus       174 ~~Va~HEiGHaLGL~Hs~~~------~svM~p~y~~~~~~~~l~~dDI~~iq~LY  222 (261)
                      ..|++|||||.||+.|-...      .-||+|..... ....++..-++.++.+-
T Consensus       135 a~~~AHElGH~lG~~HD~~~c~c~~~~cIM~~~~~~~-~~~~fS~CS~~~~~~~l  188 (200)
T d1atla_         135 GVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKG-RSYEFSDDSMHYYERFL  188 (200)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTCEETTEEETTCSSCCCC-SCEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCccCCCCCCCCCCCccccCcCCCC-CCCccCHHHHHHHHHHH
Confidence            46899999999999995442      23898865432 34457887777777643

>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]

Probab=94.38  E-value=0.014  Score=53.28  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             CcceEEEeeecCCCCCCCccCCCCceeeec--------CCCCceeeecccccccccCCCCCCCccccchhhhhhhhhhhc
Q 043639          114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSF--------SPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLL  185 (261)
Q Consensus       114 ~aDI~I~f~~~~hgd~~~fdG~gg~lAhA~--------~P~~G~vhfd~~e~wt~~~~~~~~~~~~~l~~Va~HEiGHaL  185 (261)
                      ++|+.|.......        ..+++|.|-        .|..|.|.|+....   ..     .....++.|++|||.|+|
T Consensus       108 n~Dl~i~v~~~~~--------~~~~~a~a~~c~~~~~~RPi~G~i~~n~~~i---~~-----~~~~~~~~~~~HEi~H~L  171 (475)
T d1lmla_         108 NTDFVMYVASVPS--------EEGVLAWATTCQTFSDGHPAVGVINIPAANI---AS-----RYDQLVTRVVTHEMAHAL  171 (475)
T ss_dssp             SCSEEEEEECCCC--------STTCCCEEEEEEECTTSCEEEEEEECCGGGC---CC-----SCCHHHHHHHHHHHHHHT
T ss_pred             CccEEEEEEcccC--------CCCeeEEEEeeecccCCCcccceeeccHhhc---CC-----cchhHHHHHHHHHHHHHh
Confidence            6787777654322        124555552        24457888876432   11     112345789999999999


Q ss_pred             CCCCCCCCCCc---cccccCCCC--CCCCCCHHHHHHHHHHhCCCC
Q 043639          186 GLTHSPVKEAV---MYPTLKPRD--KKVDLALDDIQGVQALYGSNP  226 (261)
Q Consensus       186 GL~Hs~~~~sv---M~p~y~~~~--~~~~l~~dDI~~iq~LYG~~~  226 (261)
                      |+..+....--   -++.+....  ..+..++.=....++-||.+.
T Consensus       172 Gfs~~~~~~~~~~~~~~~~~~~~~~~~~l~tp~~~~~a~~hfgc~~  217 (475)
T d1lmla_         172 GFSGPFFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQYGCDT  217 (475)
T ss_dssp             TCSHHHHHHTTCEEEESCGGGCSSCEEEECCHHHHHHHHHHHTCTT
T ss_pred             ccChhhhhhcccccccccccccceeeEEecchHHhHHhHhhcccCC
Confidence            99643211101   122222211  112236667777889998643

>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062 {Acidothermus cellulolyticus [TaxId: 28049]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: TTHA0227-like
domain: Uncharacterized protein Acel 2062
species: Acidothermus cellulolyticus [TaxId: 28049]

Probab=87.27  E-value=0.077  Score=38.90  Aligned_cols=16  Identities=38%  Similarity=0.738  Sum_probs=14.3

Q ss_pred             chhhhhhhhhhhcCCC
Q 043639          173 LESVAVHEIGHLLGLT  188 (261)
Q Consensus       173 l~~Va~HEiGHaLGL~  188 (261)
                      ...|++|||||.+|+.
T Consensus        89 V~~tlvhEiah~fG~~  104 (113)
T d3e11a1          89 VRKTVVHEIAHHFGID  104 (113)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            4679999999999996