Citrus Sinensis ID: 043648

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-
MDVDVVEVEEGMGQRGVSDDGEIEPNESAEANNAENSSAHGDDDGIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNVAKVPPPGSHVSGTGYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKV
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHccccEEEEEcEEcccccccEEEEEEEEcccccccccccccccEEEEEEEcccEEEEEEEcccccccccccccccccccccccccHHHHHHHccccccccccEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHccccEEEEEEEcccccccEEEEcccccHHHHHHcccEEEEEcccccccccccccEEEcccccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEcccccEEEEEEEcccEEEEEEEEcEEccccccHHHHHHHHHccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEEEccccccccccccccEEEEEEEHHcHHHHHHHHHHHHHHccccccEEEEEEEcc
ccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEEcEEEccccEEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccHHHHccccccccccHHHHcHHHHcccccccccEEEEcccEEEEEEccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEccHHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccEEEEEEEEEHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHccEEEEEcccccEEEEEEEEEcccccEEEEEEcccccEEEEEEHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEcc
MDVDVVEVEegmgqrgvsddgeiepnesaeannaenssahgdddgimdpyvgmefhtedAAKTFYDEYARRvgfsskvchfsrprpdepivfrefvcgreglkrrhgeSCDAMLRIELKGQNKWVVTKFVKehshpmvspskvhylrprrhfagttkaevyqgvgivpsgimyvsmdgnratvetnnhgartatpvetrtappiesrtappvesrtappiesrtappvesnravkntgalnyvvrpanrrrtlgrDAQNLLDYFKKMqaenpgffyaiqldddnrmANVFWADarsrtayshfgdavtlDTRYRvyqynvpfapftginhhgQMILFGCALLLDDSEASFVWLFKTFLTamndcqpvsittdQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSIldkydlrghDWLQSLYNARsqwvpvyfrdsffaaispnqgfdgsffdgyvnqqttIPMFFRQYERALENSFEREIeadfdticttprlrtpspmerqAANSFTRKVFTKFQEELVETFVYTangiesdgaiSTFRvakfeddsrayivtfnhpemrancscqmfeysgilcRHVLTVFTVtnvltlpshyiLKRWTrnaktgigvdertaelhgqeSLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNvakvpppgshvsgtgyddrkisaspsdstpllwprqdemtrrfnlndsgpaiqpvsdlnlprmapvslhrddgpsdnmvvlpCLKSMTWVMenknsapgnrVAVINLKlhdysktpsaeLEVKFQLSKVTLEPMLRSMAYISdqlstpanRVAVINLKV
MDVDVVEVeegmgqrgvsddgeiePNESAEannaenssahgddDGIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVchfsrprpdepivfrEFVCGreglkrrhgesCDAMLRIELKGQNKWVVTKFVkehshpmvspskvhylrPRRHFAgttkaevyqgVGIVPSGIMYVSMDGNRATVetnnhgartatpvetrtappiesrtappvesrtappiesrtappvesnravkntgalnyvvrpanrrrtlgrDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTtprlrtpspmerqaANSFTRKVFTKFQEELVETFVYtangiesdgaISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNvltlpshyilkrwtrnaktgigvdertaelhgqeslTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKnvakvpppgshvsgtgyddrkisaspsdstpllwPRQDEMTRRFnlndsgpaiqpvsdlnLPRMAPVslhrddgpsdnMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAyisdqlstpanrvavinlkv
MdvdvveveeGMGQRGVSDDGEIEPnesaeannaenssaHGDDDGIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHvltvftvtnvltlPSHYILKRWTRNAKTGIGVDERTAELHGQESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWkkvavvkknvakvPPPGSHVSGTGYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKV
**********************************************MDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMD************************************************************GALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTP***************FTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNV****************************************************************************MVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQL**************
***DVVE**************************************IMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGI***********QESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAV*******************************************************************************DNMVVLPCLKSMT*****************N*K***************FQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKV
MDVDVVEVEEGMGQRGVSDDGEIEPNESAEANNAENSSAHGDDDGIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDGNRATVETNNHGARTATPVETRTAPP**************************SNRAVKNTGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNVAKVPPPGSHVSGTGYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKV
********************************************GIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKT*************QESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNV**********************************************************************DGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDVDVVEVEEGMGQRGVSDDGEIEPNESAEANNAENSSAHGDDDGIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNVAKVPPPGSHVSGTGYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query841 2.2.26 [Sep-21-2011]
Q9ZVC9851 Protein FAR1-RELATED SEQU yes no 0.923 0.913 0.615 0.0
Q9SZL8788 Protein FAR1-RELATED SEQU no no 0.770 0.822 0.392 1e-156
Q9SZL7545 Protein FAR1-RELATED SEQU no no 0.512 0.790 0.465 1e-118
Q9SWG3827 Protein FAR-RED IMPAIRED no no 0.753 0.766 0.313 1e-107
Q9M8J3764 Protein FAR1-RELATED SEQU no no 0.510 0.561 0.409 1e-92
Q9LIE5839 Protein FAR-RED ELONGATED no no 0.700 0.702 0.305 1e-92
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.494 0.527 0.415 9e-91
Q6NQJ7732 Protein FAR1-RELATED SEQU no no 0.678 0.780 0.317 4e-87
Q9S793725 Protein FAR1-RELATED SEQU no no 0.732 0.849 0.287 3e-75
Q3EBQ3807 Protein FAR1-RELATED SEQU no no 0.499 0.520 0.335 1e-74
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function desciption
 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/863 (61%), Positives = 636/863 (73%), Gaps = 86/863 (9%)

Query: 1   MDVDVVEVEEGMGQRGVSDDGEIEPNESAEANNAENSSAHGDDDGIMDPYVGMEFHTEDA 60
           MDV +VE    MG   + D+G++EP++ +  NN +NS    D+ GI +P VGMEF++E  
Sbjct: 1   MDVHLVEENVSMGNHEIGDEGDVEPSDCSGQNNMDNSLGVQDEIGIAEPCVGMEFNSEKE 60

Query: 61  AKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHG--ESCDAMLRIEL 118
           AK+FYDEY+R++GF+SK+     PR D  +  REFVC     + +    ESCDAM+RIEL
Sbjct: 61  AKSFYDEYSRQLGFTSKLL----PRTDGSVSVREFVCSSSSKRSKRRLSESCDAMVRIEL 116

Query: 119 KGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSMDG 178
           +G  KWVVTKFVKEH+H + S + +H LRPRRHFA + K+   +GV  VPSG+MYVSMD 
Sbjct: 117 QGHEKWVVTKFVKEHTHGLASSNMLHCLRPRRHFANSEKSSYQEGVN-VPSGMMYVSMDA 175

Query: 179 NRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTG 238
           N       + GAR A+                                            
Sbjct: 176 N-------SRGARNAS-------------------------------------------- 184

Query: 239 ALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRT 298
                    N +RT+GRDA NLL+YFK+MQAENPGFFYA+QLD+DN+M+NVFWAD+RSR 
Sbjct: 185 ------MATNTKRTIGRDAHNLLEYFKRMQAENPGFFYAVQLDEDNQMSNVFWADSRSRV 238

Query: 299 AYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFL 358
           AY+HFGD VTLDTRYR  Q+ VPFAPFTG+NHHGQ ILFGCAL+LD+S+ SF+WLFKTFL
Sbjct: 239 AYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESDTSFIWLFKTFL 298

Query: 359 TAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKW--------------------HVE 398
           TAM D  PVS+ TDQD+AIQIA  +VFP  RHCI+KW                     VE
Sbjct: 299 TAMRDQPPVSLVTDQDRAIQIAAGQVFPGARHCINKWDVLREGQEKLAHVCLAYPSFQVE 358

Query: 399 LYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQ 458
           LYNCIN TETIEEFE SW+S++DKYDL  H+WL SLYNAR+QWVPVYFRDSFFAA+ P+Q
Sbjct: 359 LYNCINFTETIEEFESSWSSVIDKYDLGRHEWLNSLYNARAQWVPVYFRDSFFAAVFPSQ 418

Query: 459 GFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAA 518
           G+ GSFFDGYVNQQTT+PMFFR YERA+E+ FE EIEAD DT+ T P L+TPSPME QAA
Sbjct: 419 GYSGSFFDGYVNQQTTLPMFFRLYERAMESWFEMEIEADLDTVNTPPVLKTPSPMENQAA 478

Query: 519 NSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANC 578
           N FTRK+F KFQEELVETF +TAN IE DG  STFRVA FE+D++AYIVTF +PEMRANC
Sbjct: 479 NLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANC 538

Query: 579 SCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQESLT 638
           SCQMFE+SGILCRHVLTVFTVTN+LTLP HYIL+RWTRNAK+ + +DE  +E +G +S  
Sbjct: 539 SCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSE-NGHDSSI 597

Query: 639 MRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNVAKVPPPGSHVSGTGY 698
            RYN+LCREAIKY+E+GA+  E YN+A+  +REG KKV+VV+K + +  PP SH  G G 
Sbjct: 598 HRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVRKRIGRAAPPSSHGGGIGS 657

Query: 699 DDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGPSD 758
            D K S S +D+TPLLWPRQDEM RRFNLND G   Q VSDLNLPRMAPVSLHRDD   +
Sbjct: 658 GD-KTSLSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPE 716

Query: 759 NMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLR 818
           NMV LPCLKS+TW ME+KN+ PG RVAVINLKLHDY K PSA+++VKFQLS VTLEPMLR
Sbjct: 717 NMVALPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLR 776

Query: 819 SMAYISDQLSTPANRVAVINLKV 841
           SMAYIS+QLS+PANRVAVINLK+
Sbjct: 777 SMAYISEQLSSPANRVAVINLKL 799
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2 Back     alignment and function description
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query841
225436023883 PREDICTED: protein FAR1-RELATED SEQUENCE 0.959 0.913 0.738 0.0
147790734 1002 hypothetical protein VITISV_002225 [Viti 0.958 0.804 0.738 0.0
449452664876 PREDICTED: protein FAR1-RELATED SEQUENCE 0.953 0.915 0.698 0.0
356577418854 PREDICTED: protein FAR1-RELATED SEQUENCE 0.927 0.913 0.668 0.0
356499263879 PREDICTED: protein FAR1-RELATED SEQUENCE 0.953 0.912 0.639 0.0
356553676849 PREDICTED: protein FAR1-RELATED SEQUENCE 0.919 0.910 0.632 0.0
359487094854 PREDICTED: protein FAR1-RELATED SEQUENCE 0.920 0.906 0.640 0.0
18401324851 FAR1-related protein [Arabidopsis thalia 0.923 0.913 0.615 0.0
312283081854 unnamed protein product [Thellungiella h 0.927 0.913 0.615 0.0
147783588881 hypothetical protein VITISV_039640 [Viti 0.920 0.878 0.613 0.0
>gi|225436023|ref|XP_002270441.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3 [Vitis vinifera] gi|296083973|emb|CBI24361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1333 bits (3450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/865 (73%), Positives = 718/865 (83%), Gaps = 58/865 (6%)

Query: 1   MDVDVVEVEEG-MGQRGVSDD-GEIEPNESAEANNAENSSAHGDDDGIMDPYVGMEFHTE 58
           MDV+V++VE G MG   V+DD G+ EPNES E N AENS+A  D+DG+ +P+VGMEF +E
Sbjct: 1   MDVEVIDVEGGNMGSHAVADDNGDAEPNESGEINAAENSTAQ-DEDGVAEPHVGMEFDSE 59

Query: 59  DAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIEL 118
           DAA+TFY++YARR+GF++K  H +R +PD  ++ REF CGR GLKRRH +SCDAML+IEL
Sbjct: 60  DAARTFYEDYARRLGFTTKAGHCTRSKPDGMVLAREFACGRGGLKRRHADSCDAMLKIEL 119

Query: 119 KGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTK--AEVYQGVGIVPSGIMYVSM 176
           KGQ KWVVT+F KEH+H M++PSKVHYLRPRRHFA T K  AE YQGVGIVPSG+MYVSM
Sbjct: 120 KGQGKWVVTEFEKEHTHSMMNPSKVHYLRPRRHFANTAKNMAETYQGVGIVPSGVMYVSM 179

Query: 177 DGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKN 236
           DGNR ++ETN                                    R+APP+ESNR  KN
Sbjct: 180 DGNRVSIETNRG---------------------------------VRSAPPIESNRPNKN 206

Query: 237 TGALNYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARS 296
            G++NY  RP+NR+RTLGRDAQNLLDYFKKMQAENPGFFYAIQLD+DN MANVFWADARS
Sbjct: 207 AGSINYAARPSNRKRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDEDNHMANVFWADARS 266

Query: 297 RTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKT 356
           RTAYSHFGDAVTLDT YRV Q  VPFAPFTG+NHHGQ ILFGCALLLDDSEASFVWLFKT
Sbjct: 267 RTAYSHFGDAVTLDTMYRVNQCRVPFAPFTGVNHHGQTILFGCALLLDDSEASFVWLFKT 326

Query: 357 FLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHV------------------- 397
           FLTAMND  PVSITTDQD+AIQ AVA+VFPE RHCISKWHV                   
Sbjct: 327 FLTAMNDHPPVSITTDQDRAIQAAVAQVFPEARHCISKWHVLRDGQERLAHVCHAHPNFQ 386

Query: 398 -ELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISP 456
            ELYNCINLTETIEEFE SW+SILDKYDLR +DWLQSLY+ R QWVPVYFRDSFFA+ISP
Sbjct: 387 LELYNCINLTETIEEFESSWDSILDKYDLRQNDWLQSLYSIRMQWVPVYFRDSFFASISP 446

Query: 457 NQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQ 516
           N+GF+GSFFDGYVNQQTT+P+FFRQYERALEN FE+EIE+DFDTICT P LRTPSPME+Q
Sbjct: 447 NRGFEGSFFDGYVNQQTTLPVFFRQYERALENWFEKEIESDFDTICTLPVLRTPSPMEKQ 506

Query: 517 AANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRA 576
           AAN +TRK+F KFQEELVETFVYTAN IE DGAIST+RVAKFEDD +AYIV+ N PEM A
Sbjct: 507 AANLYTRKIFAKFQEELVETFVYTANRIEGDGAISTYRVAKFEDDHKAYIVSLNIPEMTA 566

Query: 577 NCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQES 636
           +CSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYIL+RWTRNAK+G+G D+R  ELHGQES
Sbjct: 567 SCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILRRWTRNAKSGVGSDDRGGELHGQES 626

Query: 637 LTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNVAKVPPPGSHVSGT 696
           LT RYNNLCREAIKY+E+GA+A E YN AM +++EG KKVAV+KKNVAKV PP + VSG 
Sbjct: 627 LTSRYNNLCREAIKYAEEGAIAVEMYNAAMVALKEGGKKVAVMKKNVAKVAPPSTQVSGI 686

Query: 697 GYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGP 756
           GYDD+K +   SD TPLLWPRQDE+ RRFNLND+G   QPV+DLNLPRMAPVSLH DDGP
Sbjct: 687 GYDDKKTATLASDMTPLLWPRQDEVIRRFNLNDAGVPAQPVADLNLPRMAPVSLHHDDGP 746

Query: 757 SDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPM 816
            +NMVVLPCLKSMTWVMENKNS PGNRVAVINLKL DYSKTPS E EVKFQLS+VTLEPM
Sbjct: 747 PENMVVLPCLKSMTWVMENKNSTPGNRVAVINLKLQDYSKTPSGESEVKFQLSRVTLEPM 806

Query: 817 LRSMAYISDQLSTPANRVAVINLKV 841
           LRSMAYI++QLSTPANRVAVINLK+
Sbjct: 807 LRSMAYINEQLSTPANRVAVINLKL 831

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147790734|emb|CAN70262.1| hypothetical protein VITISV_002225 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452664|ref|XP_004144079.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Cucumis sativus] gi|449528099|ref|XP_004171044.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356577418|ref|XP_003556823.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356499263|ref|XP_003518461.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356553676|ref|XP_003545179.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|359487094|ref|XP_002272915.2| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|18401324|ref|NP_565636.1| FAR1-related protein [Arabidopsis thaliana] gi|30683396|ref|NP_850098.1| FAR1-related protein [Arabidopsis thaliana] gi|75216958|sp|Q9ZVC9.2|FRS3_ARATH RecName: Full=Protein FAR1-RELATED SEQUENCE 3 gi|15982769|gb|AAL09732.1| At2g27110/T20P8.16 [Arabidopsis thaliana] gi|20197414|gb|AAC77869.2| Mutator-like transposase [Arabidopsis thaliana] gi|27363374|gb|AAO11606.1| At2g27110/T20P8.16 [Arabidopsis thaliana] gi|330252843|gb|AEC07937.1| FAR1-related protein [Arabidopsis thaliana] gi|330252844|gb|AEC07938.1| FAR1-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312283081|dbj|BAJ34406.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|147783588|emb|CAN65848.1| hypothetical protein VITISV_039640 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query841
TAIR|locus:2059304851 FRS3 "FAR1-related sequence 3" 0.533 0.527 0.677 2e-275
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.348 0.371 0.448 5e-142
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.324 0.500 0.469 9.4e-105
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.505 0.556 0.383 2.4e-89
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.502 0.536 0.373 1.2e-87
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.321 0.368 0.334 2.3e-85
TAIR|locus:2090394839 FHY3 "far-red elongated hypoco 0.315 0.315 0.340 7.1e-80
TAIR|locus:2016259725 FRS8 "FAR1-related sequence 8" 0.285 0.331 0.345 2.5e-67
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.312 0.374 0.301 2.7e-60
TAIR|locus:2129665827 FAR1 "FAR-RED IMPAIRED RESPONS 0.443 0.451 0.298 7.5e-58
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1619 (575.0 bits), Expect = 2.0e-275, Sum P(3) = 2.0e-275
 Identities = 307/453 (67%), Positives = 356/453 (78%)

Query:   391 CIS--KWHVELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRD 448
             C++   + VELYNCIN TETIEEFE SW+S++DKYDL  H+WL SLYNAR+QWVPVYFRD
Sbjct:   349 CLAYPSFQVELYNCINFTETIEEFESSWSSVIDKYDLGRHEWLNSLYNARAQWVPVYFRD 408

Query:   449 SFFAAISPNQGFDGSFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLR 508
             SFFAA+ P+QG+ GSFFDGYVNQQTT+PMFFR YERA+E+ FE EIEAD DT+ T P L+
Sbjct:   409 SFFAAVFPSQGYSGSFFDGYVNQQTTLPMFFRLYERAMESWFEMEIEADLDTVNTPPVLK 468

Query:   509 TPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVT 568
             TPSPME QAAN FTRK+F KFQEELVETF +TAN IE DG  STFRVA FE+D++AYIVT
Sbjct:   469 TPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAYIVT 528

Query:   569 FNHPEMRANCSCQMFEYSGILCRHXXXXXXXXXXXXXPSHYILKRWTRNAKTGIGVDERT 628
             F +PEMRANCSCQMFE+SGILCRH             P HYIL+RWTRNAK+ + +DE  
Sbjct:   529 FCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHV 588

Query:   629 AELHGQESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWXXXXXXXXXXXXXPP 688
             +E +G +S   RYN+LCREAIKY+E+GA+  E YN+A+  +REG               P
Sbjct:   589 SE-NGHDSSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVRKRIGRAAP 647

Query:   689 PGSHVSGTGYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPV 748
             P SH  G G  D K S S +D+TPLLWPRQDEM RRFNLND G   Q VSDLNLPRMAPV
Sbjct:   648 PSSHGGGIGSGD-KTSLSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPV 706

Query:   749 SLHRDDGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQL 808
             SLHRDD   +NMV LPCLKS+TW ME+KN+ PG RVAVINLKLHDY K PSA+++VKFQL
Sbjct:   707 SLHRDDTAPENMVALPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQL 766

Query:   809 SKVTLEPMLRSMAYISDQLSTPANRVAVINLKV 841
             S VTLEPMLRSMAYIS+QLS+PANRVAVINLK+
Sbjct:   767 SSVTLEPMLRSMAYISEQLSSPANRVAVINLKL 799
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
GO:0009506 "plasmodesma" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016259 FRS8 "FAR1-related sequence 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVC9FRS3_ARATHNo assigned EC number0.61520.92390.9130yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 1e-122
pfam1055188 pfam10551, MULE, MULE transposase domain 2e-24
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 3e-21
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 1e-07
pfam0443438 pfam04434, SWIM, SWIM zinc finger 2e-07
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  388 bits (999), Expect = e-122
 Identities = 224/693 (32%), Positives = 349/693 (50%), Gaps = 77/693 (11%)

Query: 6   VEVEEGMGQRGVSDD--GEIEPNESAEANNAENSSAHGDDDGIMDPYVGMEFHTEDAAKT 63
           V++  G  + G   D   E+   +  + N+         +D  ++P  GMEF +   A +
Sbjct: 29  VKLHNGDMEIGNVVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEPLSGMEFESHGEAYS 88

Query: 64  FYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKGQNK 123
           FY EYAR +GF++ + +  R +       REF+              DA       G  +
Sbjct: 89  FYQEYARSMGFNTAIQNSRRSKTS-----REFI--------------DAKFACSRYGTKR 129

Query: 124 WVVTKFVKEHSHPMVSPSKV--HYLRPRRHFAGT-TKAEVYQGVGIVPSGIMYVSMDGNR 180
               ++ K  + P    +K        RR  A T  KA ++  V   P G   +      
Sbjct: 130 ----EYDKSFNRPRARQTKQDPENGTGRRSCAKTDCKASMH--VKRRPDGKWVI-----H 178

Query: 181 ATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGAL 240
           + V+ +NH    A  V  +T     +      E +    +++ +    +  R        
Sbjct: 179 SFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGR-------- 230

Query: 241 NYVVRPANRRRTLGRDAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAY 300
           N  +           D + LLD+F +MQ  N  FFYA+ L +D R+ N+FW DA+SR  Y
Sbjct: 231 NLGLEAG--------DTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDY 282

Query: 301 SHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTA 360
            +F D V+ DT Y   +Y +P A F G+N H Q +L GCAL+ D+S A++ WL +T+L A
Sbjct: 283 GNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRA 342

Query: 361 MNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHV--------------------ELY 400
           M    P  I TDQDKA++  +++VFP   HC   WH+                    +  
Sbjct: 343 MGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFE 402

Query: 401 NCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGF 460
            CI  + T EEF   W  ILD+++L+  +W+QSLY  R QWVP Y RD+F A +S  Q  
Sbjct: 403 KCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRS 462

Query: 461 DG--SFFDGYVNQQTTIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAA 518
           +   +FFD YV+++TT+  F +QYE  L++ +E E +AD DT    P L++PSP+E+  +
Sbjct: 463 ESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVS 522

Query: 519 NSFTRKVFTKFQEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANC 578
             +T  VF KFQ E++            D    TFRV  FE + + + VT+N  ++  +C
Sbjct: 523 GVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKN-QDFTVTWNQTKLEVSC 581

Query: 579 SCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHGQESLT 638
            C++FEY G LCRH L V  +  +  +PS YILKRWT++AK+   + E + ++   +S  
Sbjct: 582 ICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQV---QSRV 638

Query: 639 MRYNNLCREAIKYSEDGAVAQETYNVAMSSIRE 671
            RYN+LC+ A+K SE+ +++QE+YN+A  ++ E
Sbjct: 639 QRYNDLCQRALKLSEEASLSQESYNIAFRALEE 671

Length = 846
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 841
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.8
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.74
cd04757108 Commd9 COMM_Domain containing protein 9. The COMM 99.55
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 98.88
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.62
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 98.53
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.36
cd04749174 Commd1_MURR1 COMM_Domain containing protein 1, als 98.16
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 97.89
cd0474887 Commd COMM_Domain, a family of domains found at th 97.32
cd04756176 Commd8 COMM_Domain containing protein 8. The COMM 97.27
COG3328379 Transposase and inactivated derivatives [DNA repli 97.26
PF07258178 HCaRG: HCaRG protein; InterPro: IPR009886 This fam 95.41
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 95.33
PF13610140 DDE_Tnp_IS240: DDE domain 91.57
cd04758186 Commd10 COMM_Domain containing protein 10. The COM 91.54
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 90.86
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 89.88
cd04750166 Commd2 COMM_Domain containing protein 2. The COMM 88.86
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 87.49
cd04753110 Commd5_HCaRG COMM_Domain containing protein 5, als 84.93
cd04752174 Commd4 COMM_Domain containing protein 4. The COMM 84.81
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-145  Score=1289.66  Aligned_cols=652  Identities=35%  Similarity=0.664  Sum_probs=584.4

Q ss_pred             CCCCCCCCCCCeeCCHHHHHHHHHHHHHhcCcEEEEeeeccCCCCCCeEEEEeeccccccccc-----------------
Q 043648           43 DDGIMDPYVGMEFHTEDAAKTFYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRR-----------------  105 (841)
Q Consensus        43 ~~~~~~P~~Gm~F~S~eeA~~fy~~YA~~~GF~vr~~~s~rsk~~g~i~~~~fvCsreG~~Rk-----------------  105 (841)
                      .+...+|.+||+|+|+||||+||+.||+++||+||+.+++|++.+|.++.++|+|+|||++|+                 
T Consensus        68 ~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~  147 (846)
T PLN03097         68 EDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDP  147 (846)
T ss_pred             CCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCc
Confidence            466789999999999999999999999999999999999999999999999999999997521                 


Q ss_pred             ---------cccCCccceEEEEeCcceEEEEEEecCCCCCCCCCccccccCCCCCCChhhhhhhhcccCCCchhhHHHhh
Q 043648          106 ---------HGESCDAMLRIELKGQNKWVVTKFVKEHSHPMVSPSKVHYLRPRRHFAGTTKAEVYQGVGIVPSGIMYVSM  176 (841)
Q Consensus       106 ---------~r~gC~a~i~v~~~~~~~W~V~~~~~eHNH~l~~~~~~~~l~~~r~~s~~~ki~~l~~~g~~p~~i~~~~~  176 (841)
                               .||||||+|+|++.++|+|+|++|+++|||||.++..+.         ..            +++++..+.
T Consensus       148 ~~~~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~---------~~------------~r~~~~~~~  206 (846)
T PLN03097        148 ENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVS---------EQ------------TRKMYAAMA  206 (846)
T ss_pred             ccccccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCccccc---------hh------------hhhhHHHHH
Confidence                     279999999999988999999999999999998764321         11            122222222


Q ss_pred             ccccccccccCCCccccCCccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCccCccccccCccccccchhhhhc-cchh
Q 043648          177 DGNRATVETNNHGARTATPVETRTAPPIESRTAPPVESRTAPPIESRTAPPVESNRAVKNTGALNYVVRPANRRR-TLGR  255 (841)
Q Consensus       177 ~~~~~~~~~~~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~N~~~~~~~r~~-~~~~  255 (841)
                      ...        +|.                                .       ++.+...|..|.  ....|+. ...+
T Consensus       207 ~~~--------~~~--------------------------------~-------~v~~~~~d~~~~--~~~~r~~~~~~g  237 (846)
T PLN03097        207 RQF--------AEY--------------------------------K-------NVVGLKNDSKSS--FDKGRNLGLEAG  237 (846)
T ss_pred             hhh--------hcc--------------------------------c-------cccccchhhcch--hhHHHhhhcccc
Confidence            211        121                                1       122444555666  2333433 3469


Q ss_pred             hHHHHHHHHHHHHhcCCCCeEEEEeCCCCceeEEEecccccHHHHHhcCCeeeecccccccccCcceeeEEEEecCCcEE
Q 043648          256 DAQNLLDYFKKMQAENPGFFYAIQLDDDNRMANVFWADARSRTAYSHFGDAVTLDTRYRVYQYNVPFAPFTGINHHGQMI  335 (841)
Q Consensus       256 d~~~ll~~l~~~~~~np~f~y~i~~D~~~~l~~ifw~~~~s~~~y~~f~dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~  335 (841)
                      |+++||+||+++|.+||+|||++++|++|+|+||||+|++|+.+|.+|||||+|||||+||+|+|||++|+|||||+|++
T Consensus       238 D~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtv  317 (846)
T PLN03097        238 DTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFM  317 (846)
T ss_pred             hHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHHHHHHhCCcccccccccch------------------
Q 043648          336 LFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIAVAKVFPEVRHCISKWHV------------------  397 (841)
Q Consensus       336 ~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~AI~~vFP~a~h~lC~wHI------------------  397 (841)
                      +||||||.+|+.|||.|||++|+++|+|++|++||||+|.+|++||++|||+|.||+|+|||                  
T Consensus       318 lfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f  397 (846)
T PLN03097        318 LLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENF  397 (846)
T ss_pred             EEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             --hhhcccccCCCHHHHHHHHHHHHHHhccccchHHHHHhhcccccccccccCcccccccCCCCCc--cccccccccccC
Q 043648          398 --ELYNCINLTETIEEFELSWNSILDKYDLRGHDWLQSLYNARSQWVPVYFRDSFFAAISPNQGFD--GSFFDGYVNQQT  473 (841)
Q Consensus       398 --~~~~~i~~s~t~~eFe~~w~~~~~~~~l~~n~wL~~ly~~R~~Wa~ay~~~~f~~gm~tt~rsE--n~~~k~~v~~~~  473 (841)
                        +|.+||+.+++++|||..|..|+++|+|++|+||+.||+.|++|||+|+++.|++||++|+|+|  |++|++|+++++
T Consensus       398 ~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~t  477 (846)
T PLN03097        398 MAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKT  477 (846)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCC
Confidence              6789999999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccCCChHHHHhhhccCHHHHHHHHHHHHhhcceEEEEeecCCceEEE
Q 043648          474 TIPMFFRQYERALENSFEREIEADFDTICTTPRLRTPSPMERQAANSFTRKVFTKFQEELVETFVYTANGIESDGAISTF  553 (841)
Q Consensus       474 sL~~f~~~~~~~l~~~~~kE~~~d~~s~~~~p~lkt~~p~Ekqaa~~yT~~~F~kfq~el~~s~~~~v~~~~~dg~~~~y  553 (841)
                      +|.+|+++|+++++.++++|+++|+++.++.|.+++++|||+||+++||++||++||+|+..+..|.+..+.++|...+|
T Consensus       478 sL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y  557 (846)
T PLN03097        478 TVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITF  557 (846)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEEeeCCCceEEEEEeCCCCceeeeecCcccCCccceeeeeeehhcccccCCccchHHhhccccccCCCccCccccccC
Q 043648          554 RVAKFEDDSRAYIVTFNHPEMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHG  633 (841)
Q Consensus       554 ~V~~~~~~~k~y~V~~~~~~~~~sCsC~~fe~~GipCrHiLaVl~~~~v~~IP~~YIlkRWtk~ak~~~~~~~~~~~~~~  633 (841)
                      .|.+.+. .+.|.|.+|..++.++|+|++||+.||||||||+||.++|+.+||++|||+||||+||.....+....   .
T Consensus       558 ~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~~~~~~~---~  633 (846)
T PLN03097        558 RVQDFEK-NQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESE---Q  633 (846)
T ss_pred             EEEEecC-CCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhhhhcccCccccc---c
Confidence            9987654 46899999999999999999999999999999999999999999999999999999998766554322   2


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---CCC----------------
Q 043648          634 QESLTMRYNNLCREAIKYSEDGAVAQETYNVAMSSIREGWKKVAVVKKNVAKVPPPGS---HVS----------------  694 (841)
Q Consensus       634 ~~s~~~Ry~~L~~~a~~~~~~gs~s~E~y~~a~~~L~e~~~~i~~~~~~~~~~~~~~~---~~~----------------  694 (841)
                      ..+.+.||+.||+++++++++|+.|+|.|+.|+++|+|+.++|+.++++...++.+.+   |+.                
T Consensus       634 ~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (846)
T PLN03097        634 VQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGTSPTHGLLCIEDDNQSRSMTKTN  713 (846)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccccCCccccccccccccCcCC
Confidence            3466789999999999999999999999999999999999999999999888876655   221                


Q ss_pred             --CCcccCCCCCCCCCCcCCC---Ccccccc-cccccccCCCCCCCCCCCcC-CCCCCCCcccccCC--CCCCccccccc
Q 043648          695 --GTGYDDRKISASPSDSTPL---LWPRQDE-MTRRFNLNDSGPAIQPVSDL-NLPRMAPVSLHRDD--GPSDNMVVLPC  765 (841)
Q Consensus       695 --~~~~~~~~~~~~~~~~~~~---~~~~~d~-~~~~~~~~~~~~~~~~v~~~-~~~~~~p~~~~~~~--~~~~~~~~~~~  765 (841)
                        -++++|||+.++++.++..   +.+||+. +++.++++++|+|||++|+| .|++|+|.   +|+  ++|++++++++
T Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~y~~q~~~q~~~~l~s~~~~---~~~~y~~q~~~~g~gq  790 (846)
T PLN03097        714 KKKNPTKKRKVNSEQEVTTVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMVQLNLMAPT---RDNYYGNQQTIQGLGQ  790 (846)
T ss_pred             ccccccccccccCchhhhhhhhhhhhhhHHhhhcccCCcccccccHHhhhHHHHhhccCCC---CCCcccCccCcccccc
Confidence              0278889999999998755   7888887 78888999999999999998 48888888   887  88888888888


Q ss_pred             cccchh
Q 043648          766 LKSMTW  771 (841)
Q Consensus       766 l~~~~~  771 (841)
                      |+||.=
T Consensus       791 l~s~~~  796 (846)
T PLN03097        791 LNSIAP  796 (846)
T ss_pred             ccccCc
Confidence            888865

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>cd04757 Commd9 COMM_Domain containing protein 9 Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1 Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins Back     alignment and domain information
>cd04756 Commd8 COMM_Domain containing protein 8 Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07258 HCaRG: HCaRG protein; InterPro: IPR009886 This family consists of several mammalian HCaRG(hypertension-related, calcium-regulated gene) proteins Back     alignment and domain information
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>cd04758 Commd10 COMM_Domain containing protein 10 Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>cd04750 Commd2 COMM_Domain containing protein 2 Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>cd04753 Commd5_HCaRG COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene) Back     alignment and domain information
>cd04752 Commd4 COMM_Domain containing protein 4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 49/172 (28%)

Query: 475 IPMFFRQYERALE----NSFEREI--EADFDTICTTPRLRTPSPMERQAANSFTRKVFTK 528
           + +F   +    +        + I  + + D I     + +   +        T ++F  
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-----IMSKDAVSG------TLRLFWT 70

Query: 529 F---QEELVETFVYTANGIESDGAISTFRVAKFEDDSRAYIVTFNHPEMRANCSCQMFEY 585
               QEE+V+ FV     +  +     F ++  + + R        P M      +M+  
Sbjct: 71  LLSKQEEMVQKFVEEV--LRIN---YKFLMSPIKTEQRQ-------PSMMT----RMYIE 114

Query: 586 SGILCRHVL----TVFTVTNVLTLPSHYILKRWTRNAKTGIGVDERTAELHG 633
                R  L     VF   NV  L  +  L++     +    V      + G
Sbjct: 115 ----QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-----LIDG 157

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query841
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 91.57
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 89.14
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=91.57  E-value=0.48  Score=39.89  Aligned_cols=56  Identities=18%  Similarity=0.382  Sum_probs=41.1

Q ss_pred             CcEEEEeeeccCCCCCCeEEEEeeccccccccccccCCccceEEEEeC-cceEEEEEEecCCCCCC
Q 043648           73 GFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKG-QNKWVVTKFVKEHSHPM  137 (841)
Q Consensus        73 GF~vr~~~s~rsk~~g~i~~~~fvCsreG~~Rk~r~gC~a~i~v~~~~-~~~W~V~~~~~eHNH~l  137 (841)
                      ||..|+--.+-.+ +...-+..|.|+        -.||||+=.|.+.. +..-.++.+..+|||++
T Consensus        17 Gy~WRKYGQK~ik-gs~~PRsYYrCt--------~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           17 GYRWRKYGQKSVK-GSPYPRSYYRCS--------SPGCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             SSCEEEEEEECCT-TCSSCEEEEEEC--------STTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CchhhhCcccccC-CCCCceeEeEcC--------CCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            7777764332222 222335678998        46999999999975 77888999999999996
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query841
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 91.32
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.32  E-value=0.11  Score=41.04  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             CcEEEEeeeccCCCCCCeEEEEeeccccccccccccCCccceEEEEeC-cceEEEEEEecCCCCCC
Q 043648           73 GFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKG-QNKWVVTKFVKEHSHPM  137 (841)
Q Consensus        73 GF~vr~~~s~rsk~~g~i~~~~fvCsreG~~Rk~r~gC~a~i~v~~~~-~~~W~V~~~~~eHNH~l  137 (841)
                      ||..|+---+.. .+...-+..|.|+        ..||+|+=.|.+.. ++.-.++....+|||++
T Consensus        13 Gy~WRKYGQK~i-kgs~~pRsYYrCt--------~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          13 GYRWRKYGQKVV-KGNPYPRSYYKCT--------TPGCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SSCBCCCEEECC-TTCSSCEEEEEEE--------CSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CcEecccCceec-cCCCCceEEEEcc--------ccCCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            666665322211 2223346778999        56999999999976 77888888999999985